21cmSense 2.0.1__py3-none-any.whl

21cmSense-2.0.1.dist-info/LICENSE.rst

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+Copyright 2021 Radio Astronomy Software Group
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of this
+software and associated documentation files (the "Software"), to deal in the Software
+without restriction, including without limitation the rights to use, copy, modify,
+merge, publish, distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to the following
+conditions:
+
+The above copyright notice and this permission notice shall be included in all copies
+or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED,
+INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
+PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT
+OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+ OTHER DEALINGS IN THE SOFTWARE.

21cmSense-2.0.1.dist-info/METADATA

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+Metadata-Version: 2.1
+Name: 21cmSense
+Version: 2.0.1
+Summary: Compute sensitivies of radio interferometers to the cosmic 21cm signal.
+Author-email: Jonathan Pober <jonathon_pober@brown.edu>, Steven Murray <murray.steveng@gmail.com>, Matt Kolopanis <matthew.kolopanis@gmail.com>
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: POSIX
+Classifier: Operating System :: Unix
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Requires-Python: >=3.9
+Description-Content-Type: text/x-rst
+License-File: LICENSE.rst
+Requires-Dist: numpy
+Requires-Dist: scipy
+Requires-Dist: future
+Requires-Dist: click
+Requires-Dist: tqdm
+Requires-Dist: pyyaml
+Requires-Dist: astropy >=5
+Requires-Dist: methodtools
+Requires-Dist: pyuvdata
+Requires-Dist: cached-property
+Requires-Dist: rich
+Requires-Dist: attrs
+Requires-Dist: hickleable >=0.1.1
+Provides-Extra: dev
+Requires-Dist: 21cmSense[docs,test] ; extra == 'dev'
+Requires-Dist: pre-commit ; extra == 'dev'
+Requires-Dist: commitizen ; extra == 'dev'
+Provides-Extra: docs
+Requires-Dist: sphinx >=1.3 ; extra == 'docs'
+Requires-Dist: sphinx-rtd-theme ; extra == 'docs'
+Requires-Dist: numpydoc ; extra == 'docs'
+Requires-Dist: nbsphinx ; extra == 'docs'
+Requires-Dist: ipython ; extra == 'docs'
+Provides-Extra: test
+Requires-Dist: pre-commit ; extra == 'test'
+Requires-Dist: pytest ; extra == 'test'
+Requires-Dist: matplotlib ; extra == 'test'
+Requires-Dist: pytest-cov ; extra == 'test'
+Requires-Dist: pytest-xdist ; extra == 'test'
+
+=========
+21cmSense
+=========
+
+.. image:: https://img.shields.io/pypi/v/21cmSense
+   :alt: PyPI - Version
+   :target: https://pypi.org/project/21cmSense
+.. image:: https://codecov.io/gh/rasg-affiliates/21cmSense/branch/main/graph/badge.svg
+  :target: https://codecov.io/gh/rasg-affiliates/21cmSense
+.. image:: https://img.shields.io/badge/code%20style-black-000000.svg
+  :target: https://github.com/psf/black
+.. image:: https://readthedocs.org/projects/21cmsense/badge/?version=latest
+  :target: https://21cmsense.readthedocs.io/en/latest/?badge=latest
+  :alt: Documentation Status
+.. image:: https://img.shields.io/github/license/Ileriayo/markdown-badges?style=flat
+  :target: ./LICENSE.rst
+
+A python package for calculating the expected sensitivities of 21cm experiments
+to the Epoch of Reionization and/or Cosmic Dawn power spectrum.
+
+Installation
+============
+For Users
+---------
+Clone/download the package and run ``pip install [-e] .`` in the top-level.
+
+If you are a ``conda`` user (which we recommend), you may want to install the following
+using ``conda`` rather than them being automatically installed with pip::
+
+    $ conda install numpy scipy pyyaml astropy
+
+To test that the package has installed correctly, install with ``pip install -e .[test]``
+and run ``pytest`` in the top-level directory.
+
+For Development
+---------------
+Clone/download the package and run ``pip install [-e] .[dev]`` in the top-level.
+
+Run ``pre-commit install; pre-commit install --hook-type=commit-msg`` to install the
+pre-commit hook checks.
+
+We recommend using the ``commitizen`` tool to write commit messages -- we use the commit
+messages to do our versioning!
+
+See the `contributing docs <https://21cmsense.readthedocs.io/en/latest/contributing.html>`_
+for more information about how to contribute to the project!
+
+Usage
+=====
+There are two ways to use this code: as a python library or via the CLI.
+More documentation on using the library can found
+`in the docs <https://21cmSense.readthedocs.org>`_, especially in the
+`getting started tutorial <https://21cmsense.readthedocs.io/en/latest/tutorials/getting_started.html>`_
+A more involved introduction to the CLI can be found in the
+`CLI tutorial <https://21cmsense.readthedocs.io/en/latest/tutorials/cli_tutorial.html>`_.
+
+As a taste, the simplest possible usage is by using the CLI as follows::
+
+    $ sense calc-sense <SENSITIVITY_CONFIG_FILE.yml>
+
+Other options to the ``calc-sense`` program can be read by using::
+
+    $ sense calc-sense --help
+
+An example config file is in this repository under ``example_configs/sensitivity_hera.yml``,
+which details the various parameters that can be set. In all, three configuration files
+are required -- one defining an ``observatory``, another defining an ``observation``, and the
+``sensitivity`` one already mentioned.
+
+The CLI can also be used in a two-step process, by running::
+
+    $ sense grid-baselines <OBSERVATION_CONFIG_FILE.yml>
+
+and then::
+
+    $ sense calc-sense <SENSITIVITY_CONFIG_FILE.yml> --array-file=<ARRAY_FILE.pkl>
+
+where the ``ARRAY_FILE`` is produced in the first step (and its location is printed during
+the execution).
+
+Running Tests
+=============
+An example of how to run tests is in the Github Workflow ``testsuite.yaml``. In short,
+just run ``pytest`` in the top-level directory after installing the package.
+
+Acknowledgment
+==============
+For details of the observing strategy assumed by this code, and other relevant
+scientific information, please see
+
+    Pober et al. 2013AJ....145...65P
+
+and
+
+    Pober et al. 2014ApJ...782...66P
+
+If you use this code in any of your work, please acknowledge these papers,
+and provide a link to this repository.

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+21cmSense-2.0.1.dist-info/METADATA,sha256=UUP7F_ieu8zNCUiLEttRM5nh0JpqO6xVYb90JDiHzkY,5435
+21cmSense-2.0.1.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+21cmSense-2.0.1.dist-info/entry_points.txt,sha256=VX9xBgdsivEdnPaaZu8x9fPX2QDnScCHu6RUtM5WJJY,47
+21cmSense-2.0.1.dist-info/top_level.txt,sha256=8meq6iG0sOjsXSUXXHELpSIcvgeW6FaEgWiKetvepRI,12
+21cmSense-2.0.1.dist-info/RECORD,,

21cmSense-2.0.1.dist-info/WHEEL

@@ -0,0 +1,5 @@
+Wheel-Version: 1.0
+Generator: bdist_wheel (0.43.0)
+Root-Is-Purelib: true
+Tag: py3-none-any
+

21cmSense-2.0.1.dist-info/entry_points.txt

@@ -0,0 +1,2 @@
+[console_scripts]
+sense = py21cmsense.cli:main

21cmSense-2.0.1.dist-info/top_level.txt

@@ -0,0 +1 @@
+py21cmsense

py21cmsense/__init__.py

@@ -0,0 +1,18 @@
+"""A package for calculate sensitivies of 21-cm interferometers."""
+
+from importlib.metadata import PackageNotFoundError, version
+
+try:
+    __version__ = version("21cmSense")
+except PackageNotFoundError:  # pragma: no cover
+    __version__ = "unknown"
+finally:
+    del version, PackageNotFoundError
+
+from . import data, theory, yaml
+from .antpos import hera
+from .baseline_filters import BaselineRange
+from .beam import GaussianBeam
+from .observation import Observation
+from .observatory import Observatory
+from .sensitivity import PowerSpectrum

py21cmsense/_utils.py

@@ -0,0 +1,112 @@
+"""Utility functions for 21cmSense."""
+
+import numpy as np
+from astropy import units as un
+from astropy.coordinates import EarthLocation, SkyCoord
+from astropy.time import Time
+from pyuvdata import utils as uvutils
+
+from . import config
+
+
+def between(xmin, xmax):
+    """Return an attrs validation function that checks a number is within bounds."""
+
+    def validator(instance, att, val):
+        assert xmin <= val <= xmax
+
+    return validator
+
+
+def positive(instance, att, x):
+    """An attrs validator that checks a value is positive."""
+    assert x > 0, "must be positive"
+
+
+def nonnegative(instance, att, x):
+    """An attrs validator that checks a value is non-negative."""
+    assert x >= 0, "must be non-negative"
+
+
+def find_nearest(array, value):
+    """Find closest value in `array` to `value`."""
+    return np.abs(array.reshape(-1, 1) - value).argmin(0)
+
+
+@un.quantity_input
+def phase_past_zenith(
+    time_past_zenith: un.day, bls_enu: np.ndarray, latitude, use_apparent: bool = True
+):
+    """Compute UVWs phased to a point rotated from zenith by a certain amount of time.
+
+    This function specifies a longitude and time of observation without loss of
+    generality -- all that matters is the time since a hypothetical point was at zenith,
+    and the latitude of the array.
+
+    Parameters
+    ----------
+    time_past_zenith
+        The time passed since the point was at zenith. If float, assumed to be in units
+        of days.
+    uvws0 : array
+        The UVWs when phased to zenith.
+    latitude
+        The latitude of the center of the array, in radians.
+
+    Returns
+    -------
+    uvws
+        The array of UVWs correctly phased.
+    """
+    # Generate ra/dec of zenith at time in the phase_frame coordinate system
+    # to use for phasing
+    telescope_location = EarthLocation.from_geodetic(lon=0, lat=latitude)
+
+    # JD is arbitrary
+    jd = 2454600
+
+    zenith_coord = SkyCoord(
+        alt=90 * un.deg,
+        az=0 * un.deg,
+        obstime=Time(jd, format="jd"),
+        frame="altaz",
+        location=telescope_location,
+    )
+    zenith_coord = zenith_coord.transform_to("icrs")
+
+    obstimes = zenith_coord.obstime + time_past_zenith
+    lsts = obstimes.sidereal_time("apparent", longitude=0.0).rad
+
+    if not hasattr(lsts, "__len__"):
+        lsts = np.array([lsts])
+
+    if use_apparent:
+        app_ra, app_dec = uvutils.calc_app_coords(
+            zenith_coord.ra.to_value("rad"),
+            zenith_coord.dec.to_value("rad"),
+            time_array=obstimes.utc.jd,
+            telescope_loc=telescope_location,
+        )
+
+        app_ra = np.tile(app_ra, len(bls_enu))
+        app_dec = np.tile(app_dec, len(bls_enu))
+
+    else:
+        app_ra = zenith_coord.ra.to_value("rad") * np.ones(len(bls_enu) * len(lsts))
+        app_dec = zenith_coord.dec.to_value("rad") * np.ones(len(bls_enu) * len(lsts))
+
+    # Now make everything nbls * ntimes big.
+    _lsts = np.tile(lsts, len(bls_enu))
+    uvws = np.repeat(bls_enu, len(lsts), axis=0)
+
+    out = uvutils.calc_uvw(
+        app_ra=app_ra,
+        app_dec=app_dec,
+        lst_array=_lsts,
+        uvw_array=uvws,
+        telescope_lat=latitude.to_value("rad"),
+        telescope_lon=0.0,
+        from_enu=True,
+        use_ant_pos=False,
+    )
+    return out.reshape((len(bls_enu), len(lsts), 3))