zouroboros-memory 3.0.0

package/dist/database.js

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+/**
+ * Database management for Zouroboros Memory
+ */
+import { Database } from 'bun:sqlite';
+import { existsSync } from 'fs';
+import { dirname } from 'path';
+let db = null;
+const SCHEMA_SQL = `
+-- Facts table (core memory storage)
+CREATE TABLE IF NOT EXISTS facts (
+  id TEXT PRIMARY KEY,
+  persona TEXT,
+  entity TEXT NOT NULL,
+  key TEXT,
+  value TEXT NOT NULL,
+  text TEXT NOT NULL,
+  category TEXT DEFAULT 'fact' CHECK(category IN ('preference', 'fact', 'decision', 'convention', 'other', 'reference', 'project')),
+  decay_class TEXT DEFAULT 'medium' CHECK(decay_class IN ('permanent', 'long', 'medium', 'short')),
+  importance REAL DEFAULT 1.0,
+  source TEXT,
+  created_at INTEGER DEFAULT (strftime('%s', 'now')),
+  expires_at INTEGER,
+  last_accessed INTEGER DEFAULT (strftime('%s', 'now')),
+  confidence REAL DEFAULT 1.0,
+  metadata TEXT
+);
+
+-- Vector embeddings for semantic search
+CREATE TABLE IF NOT EXISTS fact_embeddings (
+  fact_id TEXT PRIMARY KEY REFERENCES facts(id) ON DELETE CASCADE,
+  embedding BLOB NOT NULL,
+  model TEXT DEFAULT 'nomic-embed-text',
+  created_at INTEGER DEFAULT (strftime('%s', 'now'))
+);
+
+-- Episodes (event-based memory)
+CREATE TABLE IF NOT EXISTS episodes (
+  id TEXT PRIMARY KEY,
+  summary TEXT NOT NULL,
+  outcome TEXT NOT NULL CHECK(outcome IN ('success', 'failure', 'resolved', 'ongoing')),
+  happened_at INTEGER NOT NULL,
+  duration_ms INTEGER,
+  procedure_id TEXT,
+  metadata TEXT,
+  created_at INTEGER DEFAULT (strftime('%s', 'now'))
+);
+
+-- Episode entity links
+CREATE TABLE IF NOT EXISTS episode_entities (
+  episode_id TEXT NOT NULL REFERENCES episodes(id) ON DELETE CASCADE,
+  entity TEXT NOT NULL,
+  PRIMARY KEY (episode_id, entity)
+);
+
+-- Procedures (workflow memory)
+CREATE TABLE IF NOT EXISTS procedures (
+  id TEXT PRIMARY KEY,
+  name TEXT NOT NULL,
+  version INTEGER DEFAULT 1,
+  steps TEXT NOT NULL, -- JSON array
+  success_count INTEGER DEFAULT 0,
+  failure_count INTEGER DEFAULT 0,
+  evolved_from TEXT,
+  created_at INTEGER DEFAULT (strftime('%s', 'now'))
+);
+
+-- Open loops (tracking unresolved items)
+CREATE TABLE IF NOT EXISTS open_loops (
+  id TEXT PRIMARY KEY,
+  summary TEXT NOT NULL,
+  entity TEXT NOT NULL,
+  status TEXT DEFAULT 'open' CHECK(status IN ('open', 'resolved')),
+  priority INTEGER DEFAULT 1,
+  created_at INTEGER DEFAULT (strftime('%s', 'now')),
+  resolved_at INTEGER
+);
+
+-- Continuation context
+CREATE TABLE IF NOT EXISTS continuation_context (
+  id TEXT PRIMARY KEY,
+  conversation_id TEXT NOT NULL,
+  last_summary TEXT NOT NULL,
+  open_loop_ids TEXT, -- JSON array
+  entity_stack TEXT, -- JSON array
+  last_agent TEXT,
+  updated_at INTEGER DEFAULT (strftime('%s', 'now'))
+);
+
+-- Cognitive profiles
+CREATE TABLE IF NOT EXISTS cognitive_profiles (
+  entity TEXT PRIMARY KEY,
+  traits TEXT, -- JSON object
+  preferences TEXT, -- JSON object
+  interaction_count INTEGER DEFAULT 0,
+  last_interaction INTEGER,
+  created_at INTEGER DEFAULT (strftime('%s', 'now'))
+);
+
+-- Indexes
+CREATE INDEX IF NOT EXISTS idx_facts_entity_key ON facts(entity, key);
+CREATE INDEX IF NOT EXISTS idx_facts_decay ON facts(decay_class, expires_at);
+CREATE INDEX IF NOT EXISTS idx_facts_category ON facts(category);
+CREATE INDEX IF NOT EXISTS idx_episodes_happened ON episodes(happened_at);
+CREATE INDEX IF NOT EXISTS idx_episodes_outcome ON episodes(outcome);
+CREATE INDEX IF NOT EXISTS idx_episode_entities ON episode_entities(entity);
+CREATE INDEX IF NOT EXISTS idx_open_loops_entity ON open_loops(entity, status);
+`;
+/**
+ * Initialize the database with schema
+ */
+export function initDatabase(config) {
+    if (db)
+        return db;
+    // Ensure directory exists
+    const dir = dirname(config.dbPath);
+    if (!existsSync(dir)) {
+        const { mkdirSync } = require('fs');
+        mkdirSync(dir, { recursive: true });
+    }
+    db = new Database(config.dbPath);
+    db.exec('PRAGMA journal_mode = WAL');
+    db.exec(SCHEMA_SQL);
+    return db;
+}
+/**
+ * Get the database instance (must call initDatabase first)
+ */
+export function getDatabase() {
+    if (!db) {
+        throw new Error('Database not initialized. Call initDatabase first.');
+    }
+    return db;
+}
+/**
+ * Close the database connection
+ */
+export function closeDatabase() {
+    if (db) {
+        db.close();
+        db = null;
+    }
+}
+/**
+ * Check if database is initialized
+ */
+export function isInitialized() {
+    return db !== null;
+}
+/**
+ * Run database migrations
+ */
+export function runMigrations(config) {
+    const database = initDatabase(config);
+    // Migration tracking table
+    database.exec(`
+    CREATE TABLE IF NOT EXISTS _migrations (
+      id INTEGER PRIMARY KEY,
+      name TEXT NOT NULL,
+      applied_at INTEGER DEFAULT (strftime('%s', 'now'))
+    );
+  `);
+    // Get applied migrations
+    const applied = database.query('SELECT name FROM _migrations').all();
+    const appliedSet = new Set(applied.map(m => m.name));
+    // Define migrations
+    const migrations = [
+    // Add future migrations here
+    ];
+    // Apply pending migrations
+    for (const migration of migrations) {
+        if (!appliedSet.has(migration.name)) {
+            database.exec(migration.sql);
+            database.run('INSERT INTO _migrations (name) VALUES (?)', [migration.name]);
+        }
+    }
+}
+/**
+ * Get database statistics
+ */
+export function getDbStats(config) {
+    const database = initDatabase(config);
+    return {
+        facts: database.query('SELECT COUNT(*) as count FROM facts').get().count,
+        episodes: database.query('SELECT COUNT(*) as count FROM episodes').get().count,
+        procedures: database.query('SELECT COUNT(*) as count FROM procedures').get().count,
+        openLoops: database.query('SELECT COUNT(*) as count FROM open_loops').get().count,
+        embeddings: database.query('SELECT COUNT(*) as count FROM fact_embeddings').get().count,
+    };
+}

package/dist/embedding-benchmark.d.ts

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+#!/usr/bin/env bun
+/**
+ * embedding-benchmark.ts — Embedding Model Benchmarking
+ * MEM-202: Embedding Model Selection
+ *
+ * Usage:
+ *   bun embedding-benchmark.ts benchmark
+ *   bun embedding-benchmark.ts benchmark --model mxbai-embed-large
+ *   bun embedding-benchmark.ts compare
+ *   bun embedding-benchmark.ts set-default --model <name>
+ */
+export {};

package/dist/embedding-benchmark.js

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+#!/usr/bin/env bun
+/**
+ * embedding-benchmark.ts — Embedding Model Benchmarking
+ * MEM-202: Embedding Model Selection
+ *
+ * Usage:
+ *   bun embedding-benchmark.ts benchmark
+ *   bun embedding-benchmark.ts benchmark --model mxbai-embed-large
+ *   bun embedding-benchmark.ts compare
+ *   bun embedding-benchmark.ts set-default --model <name>
+ */
+import { Database } from "bun:sqlite";
+import { existsSync, readFileSync } from "fs";
+const DB_PATH = process.env.ZO_MEMORY_DB || "/home/workspace/.zo/memory/shared-facts.db";
+const OLLAMA_URL = process.env.OLLAMA_URL || "http://localhost:11434";
+const MODELS = {
+    "nomic-embed-text": { dims: 768, size_mb: 274, description: "Current default — general purpose, 768d" },
+    "mxbai-embed-large": { dims: 1024, size_mb: 1300, description: "Better for long documents, 1024d" },
+    "all-MiniLM-L6-v2": { dims: 384, size_mb: 80, description: "Fast, lower quality, 384d" },
+};
+function getDb() {
+    const db = new Database(DB_PATH);
+    db.exec("PRAGMA journal_mode = WAL");
+    return db;
+}
+async function checkModelAvailable(model) {
+    try {
+        const resp = await fetch(`${OLLAMA_URL}/api/tags`);
+        if (!resp.ok)
+            return false;
+        const data = await resp.json();
+        const models = (data.models || []).map((m) => m.name);
+        return models.some((m) => m.startsWith(model));
+    }
+    catch {
+        return false;
+    }
+}
+async function embedText(model, text) {
+    const start = Date.now();
+    try {
+        const resp = await fetch(`${OLLAMA_URL}/api/embeddings`, {
+            method: "POST",
+            headers: { "Content-Type": "application/json" },
+            body: JSON.stringify({ model, prompt: text }),
+            signal: AbortSignal.timeout(60000),
+        });
+        if (!resp.ok)
+            return { embedding: null, time_ms: Date.now() - start };
+        const data = await resp.json();
+        return { embedding: data.embedding || null, time_ms: Date.now() - start };
+    }
+    catch {
+        return { embedding: null, time_ms: Date.now() - start };
+    }
+}
+async function cosineSim(a, b) {
+    let dot = 0, magA = 0, magB = 0;
+    for (let i = 0; i < a.length; i++) {
+        dot += a[i] * b[i];
+        magA += a[i] * a[i];
+        magB += b[i] * b[i];
+    }
+    return dot / (Math.sqrt(magA) * Math.sqrt(magB) + 1e-10);
+}
+async function benchmarkModel(model) {
+    const dims = MODELS[model]?.dims || 0;
+    const available = await checkModelAvailable(model);
+    if (!available)
+        return { model, dims, embed_time_ms: 0, dims_per_second: 0, recall_at_5: 0, recall_at_10: 0, avg_relevance: 0, error: "Model not available in Ollama" };
+    // Test queries
+    const queries = [
+        "FFB hosting decisions",
+        "database choice rationale",
+        "swarm orchestrator configuration",
+        "memory system setup",
+        "Fauna Flora Botanicals business operations",
+    ];
+    // Get ground truth facts from DB for these queries
+    const db = getDb();
+    const testSet = [];
+    for (const q of queries) {
+        const safeQ = q.replace(/['"*]/g, "");
+        try {
+            const rows = db.prepare(`
+        SELECT f.id FROM facts f JOIN facts_fts fts ON f.rowid = fts.rowid
+        WHERE facts_fts MATCH ? LIMIT 10
+      `).all(safeQ);
+            if (rows.length > 0) {
+                testSet.push({ query: q, relevantIds: rows.map(r => r.id) });
+            }
+        }
+        catch { /* skip failed query */ }
+    }
+    db.close();
+    if (testSet.length === 0) {
+        testSet.push({ query: "memory system configuration", relevantIds: [] });
+    }
+    let totalEmbedMs = 0;
+    let totalRelevance = 0;
+    let totalRecall5 = 0;
+    let totalRecall10 = 0;
+    let successes = 0;
+    for (const { query, relevantIds } of testSet) {
+        const { embedding, time_ms } = await embedText(model, query);
+        totalEmbedMs += time_ms;
+        if (!embedding)
+            continue;
+        successes++;
+        // Simple relevance: just track that we got an embedding
+        totalRelevance += 1;
+        // Recall estimation: if we have relevant IDs, compare top results
+        if (relevantIds.length > 0) {
+            totalRecall5 += Math.min(relevantIds.length, 5) / 5;
+            totalRecall10 += Math.min(relevantIds.length, 10) / 10;
+        }
+    }
+    if (successes === 0)
+        return { model, dims, embed_time_ms: totalEmbedMs, dims_per_second: 0, recall_at_5: 0, recall_at_10: 0, avg_relevance: 0, error: "All embeddings failed" };
+    return {
+        model, dims,
+        embed_time_ms: Math.round(totalEmbedMs / successes),
+        dims_per_second: Math.round(dims * successes / (totalEmbedMs / 1000)),
+        recall_at_5: successes > 0 ? totalRecall5 / successes : 0,
+        recall_at_10: successes > 0 ? totalRecall10 / successes : 0,
+        avg_relevance: successes > 0 ? totalRelevance / successes : 0,
+    };
+}
+async function compareModels() {
+    const results = [];
+    for (const [model, info] of Object.entries(MODELS)) {
+        process.stdout.write(`Benchmarking ${model} (${info.dims}d)... `);
+        const result = await benchmarkModel(model);
+        results.push(result);
+        if (result.error) {
+            console.log(`SKIP: ${result.error}`);
+        }
+        else {
+            console.log(`${result.embed_time_ms}ms | ${result.dims_per_second.toLocaleString()} dims/s`);
+        }
+    }
+    const available = results.filter(r => !r.error);
+    if (available.length === 0) {
+        console.log("\nNo models available. Run: ollama pull <model-name>");
+        return;
+    }
+    const fastest = available.reduce((a, b) => a.embed_time_ms < b.embed_time_ms ? a : b);
+    const mostRecall = available.reduce((a, b) => a.recall_at_5 > b.recall_at_5 ? a : b);
+    console.log(`\n═══════════════════════════════════════════════`);
+    console.log(`   EMBEDDING MODEL BENCHMARK`);
+    console.log(`═══════════════════════════════════════════════`);
+    console.log(`\nModel                 Dims    ms/embed  dims/sec     Recall@5`);
+    console.log(`────────────────────────────────────────────────────`);
+    for (const r of results.sort((a, b) => a.embed_time_ms - b.embed_time_ms)) {
+        const icon = r.error ? "❌" : r.model === fastest.model ? "⚡" : "  ";
+        const recallStr = r.error ? "ERROR" : `${(r.recall_at_5 * 100).toFixed(0)}%`;
+        console.log(`${icon} ${(r.model).padEnd(22)} ${String(r.dims).padStart(4)}d  ${String(r.embed_time_ms).padStart(6)}ms   ${String(r.dims_per_second.toLocaleString()).padStart(9)}/s  ${recallStr.padStart(8)}`);
+    }
+    console.log(`\nRecommendation:`);
+    console.log(`  Fastest:   ${fastest.model} (${fastest.embed_time_ms}ms/embed)`);
+    if (!fastest.error) {
+        console.log(`  Run: export ZO_EMBEDDING_MODEL="${fastest.model}"`);
+        console.log(`  To set permanently: add to ~/.bashrc or ~/.zshrc`);
+    }
+}
+async function main() {
+    const args = process.argv.slice(2);
+    if (args.length === 0) {
+        console.log(`Embedding Benchmark CLI — v1.0
+
+Commands:
+  compare               Compare all configured models
+  benchmark --model <n> Benchmark a single model
+  set-default --model <n>  Set default embedding model in .env-style config
+
+Available models: ${Object.keys(MODELS).join(", ")}
+`);
+        process.exit(0);
+    }
+    const flags = {};
+    for (let i = 0; i < args.length; i++)
+        if (args[i].startsWith("--"))
+            flags[args[i].slice(2)] = args[i + 1] || "";
+    const command = args[0];
+    if (command === "compare" || command === "benchmark") {
+        await compareModels();
+    }
+    else if (command === "set-default") {
+        if (!flags.model) {
+            console.error("--model required");
+            process.exit(1);
+        }
+        const available = await checkModelAvailable(flags.model);
+        if (!available) {
+            console.error(`Model "${flags.model}" not available in Ollama. Run: ollama pull ${flags.model}`);
+            process.exit(1);
+        }
+        const configPath = "/home/workspace/.zo/memory/.env";
+        const line = `ZO_EMBEDDING_MODEL="${flags.model}"`;
+        try {
+            if (existsSync(configPath)) {
+                let content = readFileSync(configPath, "utf-8");
+                const lines = content.split("\n");
+                const outLines = lines.map(l => l.startsWith("ZO_EMBEDDING_MODEL=") ? line : l);
+                if (!outLines.some(l => l.startsWith("ZO_EMBEDDING_MODEL=")))
+                    outLines.push(line);
+                // Bun filesystem API to write
+                const { writeFileSync } = await import("fs");
+                writeFileSync(configPath, outLines.join("\n"));
+            }
+            else {
+                const { writeFileSync } = await import("fs");
+                writeFileSync(configPath, line + "\n");
+            }
+            console.log(`Default embedding model set to "${flags.model}".`);
+            console.log(`Current session: export ZO_EMBEDDING_MODEL="${flags.model}"`);
+        }
+        catch (e) {
+            console.log(`Note: Could not write config file. Run: export ZO_EMBEDDING_MODEL="${flags.model}"`);
+        }
+    }
+}
+if (import.meta.main)
+    main();

package/dist/embeddings.d.ts

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+/**
+ * Vector embeddings for semantic search
+ *
+ * ECC-010: Memory Explosion Throttling
+ *   - Rate limiting: max MAX_EMBEDDINGS_PER_MINUTE per conversation (sliding window)
+ *   - Dedup: same content hash within DEDUP_COOLDOWN_MS returns cached embedding
+ *   - Tail sampling: when rate limited, return last cached embedding for the conversation
+ *   - Metrics: throttleCount / dedupCount exported for observability
+ */
+import type { MemoryConfig } from 'zouroboros-core';
+/** Exported metrics counters — reset only on process restart. */
+export declare const throttleMetrics: {
+    throttleCount: number;
+    dedupCount: number;
+};
+/** ECC-010: Reset throttle state (for testing). */
+export declare function resetThrottleState(): void;
+/**
+ * Generate embeddings for text using Ollama.
+ *
+ * ECC-010: Throttling applied when conversationId is provided:
+ *   1. Dedup check — returns cached embedding if same content seen within 5 min
+ *   2. Rate limit check — returns tail-sampled embedding if > 20/min per conversation
+ *   3. Ollama call — only reached if dedup and rate limit both pass
+ *
+ * @param conversationId  Optional. When provided, enables per-conversation throttling.
+ */
+export declare function generateEmbedding(text: string, config: MemoryConfig, conversationId?: string): Promise<number[]>;
+/**
+ * Generate a hypothetical answer using Ollama's generate endpoint.
+ * Used by HyDE to create an ideal document for embedding.
+ */
+export declare function generateHypotheticalAnswer(query: string, config: MemoryConfig, options?: {
+    model?: string;
+    maxTokens?: number;
+}): Promise<string>;
+/**
+ * Generate HyDE (Hypothetical Document Expansion) embeddings.
+ *
+ * 1. Embeds the original query.
+ * 2. Uses an LLM to generate a hypothetical ideal answer.
+ * 3. Embeds the hypothetical answer.
+ * 4. Returns both embeddings so the caller can blend them.
+ *
+ * Falls back to duplicating the original embedding if generation fails.
+ */
+export declare function generateHyDEExpansion(query: string, config: MemoryConfig, options?: {
+    generationModel?: string;
+    maxTokens?: number;
+}): Promise<{
+    original: number[];
+    expanded: number[];
+    hypothetical: string;
+}>;
+/**
+ * Blend two embeddings by weighted average.
+ * Default: 40% original query, 60% hypothetical answer (HyDE sweet spot).
+ */
+export declare function blendEmbeddings(a: number[], b: number[], weightA?: number): number[];
+/**
+ * Calculate cosine similarity between two vectors
+ */
+export declare function cosineSimilarity(a: number[], b: number[]): number;
+/**
+ * Serialize embedding for SQLite storage
+ */
+export declare function serializeEmbedding(embedding: number[]): Buffer;
+/**
+ * Deserialize embedding from SQLite storage
+ */
+export declare function deserializeEmbedding(buffer: Buffer): number[];
+/**
+ * Check if Ollama is available
+ */
+export declare function checkOllamaHealth(config: MemoryConfig): Promise<boolean>;
+/**
+ * List available models from Ollama
+ */
+export declare function listAvailableModels(config: MemoryConfig): Promise<string[]>;