zarrextra 0.2.0 → 0.2.2

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../src/result.ts","../src/types.ts","../src/prefixedStore.ts","../src/htj2k-encode.ts","../src/omeZarr.ts","../src/index.ts"],"sourcesContent":["/**\n * Result type for explicit error handling without exceptions.\n * Inspired by Rust's Result<T, E>.\n *\n * This type is useful for operations that can fail, especially in zarr operations\n * where errors should be handled explicitly rather than thrown as exceptions.\n *\n * Note: This is a custom implementation for simplicity. We may review using\n * an existing Result library (such as neverthrow) in the future,\n * but for now this provides a lightweight, dependency-free solution.\n */\n\n/**\n * A Result type for explicit error handling without exceptions.\n * Inspired by Rust's Result<T, E>.\n */\nexport type Result<T, E = Error> = { ok: true; value: T } | { ok: false; error: E };\n\n/** Create a successful Result */\nexport const Ok = <T>(value: T): Result<T, never> => ({ ok: true, value });\n\n/** Create a failed Result */\nexport const Err = <E>(error: E): Result<never, E> => ({ ok: false, error });\n\n/** Type guard for Ok results */\nexport const isOk = <T, E>(result: Result<T, E>): result is { ok: true; value: T } => result.ok;\n\n/** Type guard for Err results */\nexport const isErr = <T, E>(result: Result<T, E>): result is { ok: false; error: E } => !result.ok;\n\n/**\n * Unwrap a Result, throwing if it's an error.\n * Use when you want to convert back to exception-based error handling.\n */\nexport const unwrap = <T, E>(result: Result<T, E>): T => {\n  if (result.ok) return result.value;\n  throw result.error instanceof Error ? result.error : new Error(String(result.error));\n};\n\n/**\n * Unwrap a Result with a default value for errors.\n */\nexport const unwrapOr = <T, E>(result: Result<T, E>, defaultValue: T): T => {\n  return result.ok ? result.value : defaultValue;\n};\n","import type * as zarr from 'zarrita';\n\n/**\n * Supported inputs for opening a store.\n */\nexport type StoreReference = string | zarr.Readable;\n\ntype Store = zarr.Readable;\n\n/**\n * Zarr attributes type - a record of string keys to unknown values\n */\nexport type ZAttrsAny = Record<string, unknown>;\n\n/**\n * Symbol key for storing zarr attributes in the tree structure\n */\nexport const ATTRS_KEY = Symbol('attrs');\n\n/**\n * Symbol key for storing zarr array metadata\n */\nexport const ZARRAY_KEY = Symbol('.zarray');\n\n/**\n * Lazy zarr array type - represents a zarr array with a `get()` method for loading it,\n * and `.zarray` from consolidated metadata.\n */\nexport type LazyZarrArray<T extends zarr.DataType> = {\n  [ATTRS_KEY]?: ZAttrsAny;\n  [ZARRAY_KEY]: ZAttrsAny;\n  get: () => Promise<zarr.Array<T>>;\n};\n\n/**\n * Zarr tree type\n *\n * This is a tree of zarr arrays and groups, with the leaves being lazy arrays.\n * It is used to represent the structure of the zarr store.\n * Leaf type subject to change.\n */\nexport interface ZarrTree {\n  [ATTRS_KEY]?: ZAttrsAny;\n  [key: string]: ZarrTree | LazyZarrArray<zarr.DataType>;\n}\n\n/**\n * Zarr v3 array node metadata\n */\nexport type ZarrV3ArrayNode = {\n  shape: number[];\n  data_type: string;\n  chunk_grid: {\n    name: string;\n    configuration: {\n      chunk_shape: number[];\n    };\n  };\n  chunk_key_encoding: {\n    name: string;\n    configuration: {\n      separator: string;\n    };\n  };\n  fill_value: number | string | boolean;\n  codecs: Array<{\n    name: string;\n    configuration?: Record<string, unknown>;\n  }>;\n  attributes: Record<string, unknown>;\n  dimension_names: string[];\n  zarr_format: number;\n  node_type: 'array';\n  storage_transformers: unknown[];\n};\n\n/**\n * Zarr v3 group node metadata\n */\nexport type ZarrV3GroupNode = {\n  attributes: Record<string, unknown>;\n  zarr_format: number;\n  consolidated_metadata: {\n    kind: string;\n    must_understand: boolean;\n    metadata: Record<string, unknown>;\n  };\n  node_type: 'group';\n};\n\n/**\n * Zarr v3 consolidated metadata structure (zarr.json)\n * The actual structure has metadata nested under consolidated_metadata.metadata\n * with path keys like \"images/blobs_image\", \"labels/blobs_labels\", etc.\n * Each entry can be either a group node or an array node.\n */\nexport type ZarrV3Metadata = {\n  attributes: Record<string, unknown>;\n  zarr_format: number;\n  consolidated_metadata: {\n    kind: string;\n    must_understand: boolean;\n    metadata: Record<string, ZarrV3GroupNode | ZarrV3ArrayNode>;\n  };\n  node_type: 'group';\n};\n\n/**\n * This type is liable to change in future - for now, it has `zarritaStore` which is the `ListableStore` from `zarrita`,\n * and `tree: ZarrTree` which has the object hierarchy as described in the consolidated metadata as a mostly \"Plain Old Javascript Object\",\n * but with (weakly typed) `Symbol`-keyed `attrs` & `.zarray` properties where available, and a `get()` on leaf nodes\n * for requesting array data.\n *\n * The use of `Symbol('attrs')` is intended to make these properties easy to access, but not appear when using `Object.keys()` etc.\n */\nexport type ConsolidatedStore = {\n  zarritaStore: zarr.Listable<Store>;\n  tree: ZarrTree;\n};\n","import type * as zarr from 'zarrita';\n\nfunction toAbsolutePath(path: string): zarr.AbsolutePath {\n  const trimmed = path.replace(/^\\/+|\\/+$/g, '');\n  // Zarrita brands absolute paths as template-literal types; normalization above enforces it.\n  return (trimmed ? `/${trimmed}` : '/') as zarr.AbsolutePath;\n}\n\nfunction joinAbsolutePath(prefix: string, key: zarr.AbsolutePath): zarr.AbsolutePath {\n  const normalizedPrefix = toAbsolutePath(prefix);\n  if (normalizedPrefix === '/') {\n    return key;\n  }\n  if (key === '/') {\n    return normalizedPrefix;\n  }\n  // Both sides are absolute Zarr paths; concatenating preserves the leading slash.\n  return `${normalizedPrefix}${key}` as zarr.AbsolutePath;\n}\n\n/**\n * Create a read-only store view rooted at `prefix`.\n *\n * This is useful when callers have a SpatialData root store but a downstream\n * reader expects the supplied store root to be an individual image/table group.\n */\nexport function createPrefixedStore(store: zarr.Readable, prefix: string): zarr.AsyncReadable {\n  return {\n    async get(key: zarr.AbsolutePath, opts?: zarr.GetOptions) {\n      return await store.get(joinAbsolutePath(prefix, key), opts);\n    },\n    getRange: store.getRange\n      ? async (key: zarr.AbsolutePath, range: zarr.RangeQuery, opts?: zarr.GetOptions) =>\n          await store.getRange?.(joinAbsolutePath(prefix, key), range, opts)\n      : undefined,\n  };\n}\n","import { createWasmLocateFile, type OpenJphFactory, type RegisterImageCodecOptions } from './codecs';\n\nexport type Htj2kPlaneDtype = 'uint8' | 'int8' | 'uint16' | 'int16';\n\nexport type Htj2kEncodeOptions = {\n  /** Lossless when true. Defaults to true for fixture-style writes. */\n  reversible?: boolean;\n  /** OpenJPH quantization factor when irreversible (lower = higher fidelity, larger output). */\n  quality?: number;\n  locateFile?: RegisterImageCodecOptions['locateFile'];\n};\n\ntype Htj2kFrameInfo = {\n  width: number;\n  height: number;\n  bitsPerSample: 8 | 16;\n  isSigned: boolean;\n  componentCount: 1;\n  isUsingColorTransform: false;\n};\n\ntype Htj2kEncoderClass = new () => {\n  /** OpenJPH WASM API: `setQuality(reversible, quality)`; quality is a quantization factor (lower = better). */\n  setQuality(reversible: boolean, quality: number): void;\n  getDecodedBuffer(frame: Htj2kFrameInfo): ArrayBufferView;\n  encode(): void;\n  getEncodedBuffer(): Uint8Array;\n};\n\nexport type OpenJphEncoder = (\n  plane: Uint8Array | Uint16Array | Int8Array | Int16Array,\n  size: { width: number; height: number },\n  options?: Pick<Htj2kEncodeOptions, 'reversible' | 'quality'>\n) => Promise<Uint8Array>;\n\nconst dynamicImport = new Function('specifier', 'return import(specifier)') as (\n  specifier: string\n) => Promise<Record<string, unknown>>;\n\nfunction bitsPerSampleForPlane(\n  plane: Uint8Array | Uint16Array | Int8Array | Int16Array\n): 8 | 16 {\n  return plane instanceof Uint16Array || plane instanceof Int16Array ? 16 : 8;\n}\n\nfunction isSignedPlane(plane: Uint8Array | Uint16Array | Int8Array | Int16Array): boolean {\n  return plane instanceof Int8Array || plane instanceof Int16Array;\n}\n\nfunction frameInfoForPlane(\n  plane: Uint8Array | Uint16Array | Int8Array | Int16Array,\n  size: { width: number; height: number }\n): Htj2kFrameInfo {\n  const { width, height } = size;\n  const expectedValues = width * height;\n  if (plane.length !== expectedValues) {\n    throw new Error(\n      `HTJ2K plane has ${plane.length} samples, expected ${expectedValues} for ${width}x${height}.`\n    );\n  }\n  return {\n    width,\n    height,\n    bitsPerSample: bitsPerSampleForPlane(plane),\n    isSigned: isSignedPlane(plane),\n    componentCount: 1,\n    isUsingColorTransform: false,\n  };\n}\n\n/** Create an HTJ2K encoder backed by an OpenJPH WASM factory. */\nexport function createOpenJphEncoder(\n  factory: OpenJphFactory,\n  options: Pick<Htj2kEncodeOptions, 'locateFile'> = {}\n): OpenJphEncoder {\n  let runtimePromise: Promise<Record<string, unknown>> | undefined;\n\n  async function getRuntime() {\n    runtimePromise ??= Promise.resolve(\n      factory({\n        locateFile: options.locateFile,\n      })\n    );\n    return await runtimePromise;\n  }\n\n  return async (plane, size, encodeOptions = {}) => {\n    const runtime = await getRuntime();\n    const Encoder = runtime.HTJ2KEncoder as Htj2kEncoderClass | undefined;\n    if (!Encoder) {\n      throw new Error('OpenJPH runtime does not expose HTJ2KEncoder.');\n    }\n\n    const reversible = encodeOptions.reversible ?? true;\n    const quality = encodeOptions.quality ?? 0;\n    const frame = frameInfoForPlane(plane, size);\n    const encoder = new Encoder();\n    encoder.setQuality(reversible, quality);\n\n    const buffer = encoder.getDecodedBuffer(frame);\n    const target =\n      frame.bitsPerSample === 16\n        ? new Uint16Array(buffer.buffer, buffer.byteOffset, plane.length)\n        : new Uint8Array(buffer.buffer, buffer.byteOffset, plane.length);\n    target.set(plane);\n    encoder.encode();\n    return encoder.getEncodedBuffer();\n  };\n}\n\n/** Load the optional OpenJPH WASM encoder from @cornerstonejs/codec-openjph. */\nexport async function loadOpenJphEncoder(\n  options: Htj2kEncodeOptions = {}\n): Promise<OpenJphEncoder> {\n  const factoryMod = await dynamicImport('@cornerstonejs/codec-openjph/wasmjs').catch(() =>\n    dynamicImport('@cornerstonejs/codec-openjph')\n  );\n  const factory = (factoryMod.default ?? factoryMod.OpenJPHJS ?? factoryMod) as unknown;\n  if (typeof factory !== 'function') {\n    throw new Error('Could not find an OpenJPH factory export in @cornerstonejs/codec-openjph.');\n  }\n  const wasmMod = await dynamicImport('@cornerstonejs/codec-openjph/wasm').catch(() => null);\n  const wasmAsset = wasmMod ? ((wasmMod.default ?? wasmMod) as string | undefined) : undefined;\n  const locateFile =\n    options.locateFile ?? (wasmAsset ? createWasmLocateFile(wasmAsset) : undefined);\n  return createOpenJphEncoder(factory as OpenJphFactory, { locateFile });\n}\n\nexport function planeArrayForDtype(\n  dtype: Htj2kPlaneDtype,\n  bytes: Uint8Array\n) {\n  switch (dtype) {\n    case 'uint8':\n      return bytes;\n    case 'int8':\n      return new Int8Array(bytes.buffer, bytes.byteOffset, bytes.byteLength);\n    case 'uint16':\n      return new Uint16Array(bytes.buffer, bytes.byteOffset, bytes.byteLength / 2);\n    case 'int16':\n      return new Int16Array(bytes.buffer, bytes.byteOffset, bytes.byteLength / 2);\n    default:\n      throw new Error(`Unsupported HTJ2K plane dtype '${dtype}'.`);\n  }\n}\n\n/** Encode one 2D plane to an HTJ2K bitstream. */\nexport async function encodeHtj2kPlane(\n  plane: Uint8Array | Uint16Array | Int8Array | Int16Array,\n  size: { width: number; height: number },\n  options: Htj2kEncodeOptions = {}\n): Promise<Uint8Array> {\n  const encoder = await loadOpenJphEncoder(options);\n  return await encoder(plane, size, options);\n}\n","import * as zarr from 'zarrita';\nimport { getZarrChunk } from './chunkDecode';\n\nexport type RasterSelection = Record<string, number> | number[];\n\nexport interface VivCompatiblePixelSource {\n  labels: string[];\n  tileSize: number;\n  shape: number[];\n  dtype: string;\n  meta?: { physicalSizes?: { x?: { size: number; unit: string } } };\n  getRaster(props: { selection: RasterSelection; signal?: AbortSignal }): Promise<{\n    data: unknown;\n    width: number;\n    height: number;\n  }>;\n  getTile(props: {\n    x: number;\n    y: number;\n    selection: RasterSelection;\n    signal?: AbortSignal;\n  }): Promise<{\n    data: unknown;\n    width: number;\n    height: number;\n  }>;\n  onTileError(err: Error): void;\n}\n\ntype OmeAxis = { name: string; type?: string; unit?: string };\ntype OmeMultiscaleAttrs = {\n  datasets?: Array<{ path: string }>;\n  axes?: Array<string | OmeAxis>;\n};\ntype OmeRootAttrs = {\n  multiscales?: OmeMultiscaleAttrs[];\n  omero?: unknown;\n  [key: string]: unknown;\n};\n\nfunction isObject(value: unknown): value is Record<string, unknown> {\n  return typeof value === 'object' && value !== null && !Array.isArray(value);\n}\n\nfunction isOmeAxis(value: unknown): value is OmeAxis {\n  return isObject(value) && typeof value.name === 'string';\n}\n\nfunction isOmeDataset(value: unknown): value is { path: string } {\n  return isObject(value) && typeof value.path === 'string';\n}\n\nfunction isOmeMultiscaleAttrs(value: unknown): value is OmeMultiscaleAttrs {\n  if (!isObject(value)) return false;\n  const datasets = value.datasets;\n  if (datasets !== undefined) {\n    if (!Array.isArray(datasets)) return false;\n    if (!datasets.every(isOmeDataset)) return false;\n  }\n  const axes = value.axes;\n  if (axes !== undefined) {\n    if (!Array.isArray(axes)) return false;\n    if (!axes.every((axis) => typeof axis === 'string' || isOmeAxis(axis))) return false;\n  }\n  return true;\n}\n\nfunction getOmeRootAttrs(attrs: Record<string, unknown>): OmeRootAttrs {\n  const candidate = isObject(attrs.ome) ? attrs.ome : attrs;\n  if (!('multiscales' in candidate)) {\n    return candidate;\n  }\n  if (!Array.isArray(candidate.multiscales)) {\n    throw new Error('OME-Zarr `multiscales` attribute must be an array.');\n  }\n  if (!candidate.multiscales.every(isOmeMultiscaleAttrs)) {\n    throw new Error('OME-Zarr `multiscales` entries must contain valid dataset paths and axes.');\n  }\n  return candidate;\n}\n\nfunction isInterleaved(shape: number[], labels?: string[]) {\n  const lastDimSize = shape[shape.length - 1];\n  if (lastDimSize !== 3 && lastDimSize !== 4) {\n    return false;\n  }\n  if (labels?.some((label) => label.toLowerCase() === 'c')) {\n    return false;\n  }\n  return true;\n}\n\nfunction axisIndex(labels: string[], axis: 'x' | 'y'): number {\n  const index = labels.findIndex((label) => label.toLowerCase() === axis);\n  if (index === -1) {\n    throw new Error(`OME-Zarr labels must include '${axis}' axis.`);\n  }\n  return index;\n}\n\nfunction spatialAxisIndices(shape: number[], labels: string[]): { xIndex: number; yIndex: number } {\n  if (isInterleaved(shape, labels)) {\n    const len = shape.length;\n    return { yIndex: len - 3, xIndex: len - 2 };\n  }\n  return { yIndex: axisIndex(labels, 'y'), xIndex: axisIndex(labels, 'x') };\n}\n\nfunction spatialDimensions(shape: number[], labels: string[]): [number, number] {\n  const { xIndex, yIndex } = spatialAxisIndices(shape, labels);\n  return [shape[yIndex] ?? 0, shape[xIndex] ?? 0];\n}\n\nfunction spatialDimensionsFromChunk(\n  chunkShape: number[],\n  sourceShape: number[],\n  labels: string[]\n): [number, number] {\n  if (isInterleaved(sourceShape, labels)) {\n    const [height, width] = chunkShape.slice(-3);\n    return [height ?? 0, width ?? 0];\n  }\n  if (chunkShape.length >= 2) {\n    const [height, width] = chunkShape.slice(-2);\n    return [height ?? 0, width ?? 0];\n  }\n  return [chunkShape[0] ?? 0, 0];\n}\n\nfunction getImageSize(source: { shape: number[]; labels: string[] }) {\n  const [height, width] = spatialDimensions(source.shape, source.labels);\n  return { height, width };\n}\n\nfunction prevPowerOf2(x: number): number {\n  return 2 ** Math.floor(Math.log2(x));\n}\n\nfunction guessTileSize(arr: zarr.Array<zarr.DataType>, labels: string[]): number {\n  if (isInterleaved(arr.shape, labels)) {\n    const [yChunk, xChunk] = arr.chunks.slice(-3);\n    return prevPowerOf2(Math.min(yChunk ?? 1, xChunk ?? 1));\n  }\n  const yChunk = arr.chunks[axisIndex(labels, 'y')];\n  const xChunk = arr.chunks[axisIndex(labels, 'x')];\n  return prevPowerOf2(Math.min(yChunk ?? 1, xChunk ?? 1));\n}\n\nfunction labelsFromAxes(axes: OmeMultiscaleAttrs['axes'] | undefined): string[] {\n  if (!axes) return ['t', 'c', 'z', 'y', 'x'];\n  return axes.map((axis) => (typeof axis === 'string' ? axis : axis.name));\n}\n\nfunction normalizeDtype(dtype: string): string {\n  const lookup: Record<string, string> = {\n    u1: 'Uint8',\n    u2: 'Uint16',\n    u4: 'Uint32',\n    i1: 'Int8',\n    i2: 'Int16',\n    i4: 'Int32',\n    f4: 'Float32',\n    f8: 'Float64',\n    uint8: 'Uint8',\n    uint16: 'Uint16',\n    uint32: 'Uint32',\n    int8: 'Int8',\n    int16: 'Int16',\n    int32: 'Int32',\n    float32: 'Float32',\n    float64: 'Float64',\n  };\n  return lookup[dtype.toLowerCase()] ?? dtype.charAt(0).toUpperCase() + dtype.slice(1);\n}\n\nfunction getIndexer(labels: string[]) {\n  const labelSet = new Set(labels);\n  if (labelSet.size !== labels.length) {\n    throw new Error('OME-Zarr labels must be unique.');\n  }\n  return (selection: RasterSelection): Array<number | zarr.Slice | null> => {\n    if (Array.isArray(selection)) {\n      return [...selection];\n    }\n    const indexed: Array<number | zarr.Slice | null> = Array(labels.length).fill(0);\n    for (const [key, value] of Object.entries(selection)) {\n      const index = labels.indexOf(key);\n      if (index === -1) {\n        throw new Error(`Invalid OME-Zarr selection axis '${key}'.`);\n      }\n      indexed[index] = value;\n    }\n    return indexed;\n  };\n}\n\nclass BoundsCheckError extends Error {}\n\nclass ZarrPixelSource implements VivCompatiblePixelSource {\n  private readonly indexer: ReturnType<typeof getIndexer>;\n\n  constructor(\n    private readonly data: zarr.Array<zarr.DataType>,\n    public readonly labels: string[],\n    public readonly tileSize: number\n  ) {\n    this.indexer = getIndexer(labels);\n  }\n\n  get shape() {\n    return this.data.shape;\n  }\n\n  get dtype() {\n    return normalizeDtype(this.data.dtype);\n  }\n\n  private chunkIndex(\n    selection: RasterSelection,\n    tile: { x: number | zarr.Slice | null; y: number | zarr.Slice | null }\n  ) {\n    const { xIndex, yIndex } = spatialAxisIndices(this.data.shape, this.labels);\n    const sel = this.indexer(selection);\n    sel[xIndex] = tile.x;\n    sel[yIndex] = tile.y;\n    return sel;\n  }\n\n  private getSlices(x: number, y: number) {\n    const { height, width } = getImageSize(this);\n    const xStart = x * this.tileSize;\n    const xStop = Math.min((x + 1) * this.tileSize, width);\n    const yStart = y * this.tileSize;\n    const yStop = Math.min((y + 1) * this.tileSize, height);\n\n    if (xStart >= xStop || yStart >= yStop) {\n      throw new BoundsCheckError('Tile slice is zero-sized or inverted.');\n    }\n    if (xStart < 0 || yStart < 0 || xStop > width || yStop > height) {\n      throw new BoundsCheckError('Tile slice is out of bounds.');\n    }\n\n    return [zarr.slice(xStart, xStop), zarr.slice(yStart, yStop)];\n  }\n\n  private async getRaw(\n    selection: Array<number | zarr.Slice | null>,\n    signal?: AbortSignal\n  ): Promise<zarr.Chunk<zarr.DataType>> {\n    return await getZarrChunk(this.data, selection, { signal });\n  }\n\n  async getRaster({ selection, signal }: { selection: RasterSelection; signal?: AbortSignal }) {\n    const sel = this.chunkIndex(selection, { x: null, y: null });\n    const result = await this.getRaw(sel, signal);\n    const [height, width] = spatialDimensionsFromChunk(\n      result.shape,\n      this.data.shape,\n      this.labels\n    );\n    return { data: result.data, width, height };\n  }\n\n  async getTile({\n    x,\n    y,\n    selection,\n    signal,\n  }: {\n    x: number;\n    y: number;\n    selection: RasterSelection;\n    signal?: AbortSignal;\n  }) {\n    const [xSlice, ySlice] = this.getSlices(x, y);\n    const sel = this.chunkIndex(selection, { x: xSlice, y: ySlice });\n    const result = await this.getRaw(sel, signal);\n    const [height, width] = spatialDimensionsFromChunk(\n      result.shape,\n      this.data.shape,\n      this.labels\n    );\n    return { data: result.data, width, height };\n  }\n\n  onTileError(err: Error) {\n    if (!(err instanceof BoundsCheckError)) {\n      throw err;\n    }\n  }\n}\n\nasync function loadMultiscales(store: zarr.AsyncReadable) {\n  const readable = await zarr.withMaybeConsolidatedMetadata(store);\n  const root = zarr.root(readable);\n  const group = await zarr.open(root, { kind: 'group' });\n  const rootAttrs = getOmeRootAttrs(group.attrs);\n  const firstMultiscale = rootAttrs.multiscales?.[0];\n  const paths: string[] = firstMultiscale?.datasets?.map((dataset) => dataset.path) ?? ['0'];\n  const labels = labelsFromAxes(firstMultiscale?.axes);\n  const data: Array<zarr.Array<zarr.DataType>> = await Promise.all(\n    paths.map((path: string) => zarr.open(root.resolve(path), { kind: 'array' }))\n  );\n  return { data, labels, rootAttrs };\n}\n\n/** Load an OME-Zarr multiscale image from a Zarrita readable store. */\nexport async function loadOmeZarrMultiscalesFromStore(\n  store: zarr.AsyncReadable\n): Promise<VivCompatiblePixelSource[]> {\n  const { data, labels } = await loadMultiscales(store);\n  if (data.length === 0) {\n    throw new Error('OME-Zarr multiscale dataset is empty or has no valid arrays.');\n  }\n  const tileSize = guessTileSize(data[0], labels);\n  return data.map((arr: zarr.Array<zarr.DataType>) => new ZarrPixelSource(arr, labels, tileSize));\n}\n","import * as zarr from 'zarrita';\nimport { Err, Ok, type Result } from './result';\nimport type {\n  ConsolidatedStore,\n  LazyZarrArray,\n  StoreReference,\n  ZAttrsAny,\n  ZarrTree,\n} from './types';\nimport { ATTRS_KEY, ZARRAY_KEY } from './types';\n\nconst decoder = new TextDecoder();\n\nfunction isReadableStore(source: StoreReference): source is zarr.Readable {\n  return typeof source !== 'string';\n}\n\nfunction isListableStore(store: zarr.Readable): store is zarr.Listable<zarr.Readable> {\n  return 'contents' in store && typeof store.contents === 'function';\n}\n\nfunction normalizeStringSource(source: string): string {\n  return source.replace(/\\/+$/, '');\n}\n\nfunction describeSource(source: StoreReference): string {\n  return typeof source === 'string' ? source : '[store instance]';\n}\n\nfunction metadataKeysForPath(\n  path: zarr.AbsolutePath,\n  kind: 'array' | 'group'\n): zarr.AbsolutePath[] {\n  const basePath = path === '/' ? '' : path;\n  if (kind === 'array') {\n    return [`${basePath}/zarr.json`, `${basePath}/.zarray`] as zarr.AbsolutePath[];\n  }\n  return [`${basePath}/zarr.json`, `${basePath}/.zgroup`] as zarr.AbsolutePath[];\n}\n\nasync function readMetadataJson(\n  store: zarr.Readable,\n  path: zarr.AbsolutePath,\n  kind: 'array' | 'group'\n): Promise<ZAttrsAny | undefined> {\n  for (const metadataKey of metadataKeysForPath(path, kind)) {\n    const bytes = await store.get(metadataKey);\n    if (bytes) {\n      return JSON.parse(decoder.decode(bytes)) as ZAttrsAny;\n    }\n  }\n  return undefined;\n}\n\nasync function readNodeAttrs(\n  root: zarr.Group<zarr.Readable>,\n  path: zarr.AbsolutePath,\n  kind: 'array' | 'group'\n): Promise<ZAttrsAny> {\n  if (path === '/') {\n    return root.attrs;\n  }\n\n  const node =\n    kind === 'array'\n      ? await zarr.open(root.resolve(path), { kind: 'array' })\n      : await zarr.open(root.resolve(path), { kind: 'group' });\n  return node.attrs;\n}\n\nfunction sortContentsByDepth(\n  a: { path: zarr.AbsolutePath },\n  b: { path: zarr.AbsolutePath }\n): number {\n  const depthA = a.path.split('/').filter(Boolean).length;\n  const depthB = b.path.split('/').filter(Boolean).length;\n  return depthA - depthB;\n}\n\nasync function parseStoreContents(store: zarr.Listable<zarr.Readable>): Promise<ZarrTree> {\n  const root = await zarr.open(store, { kind: 'group' });\n  const tree: ZarrTree = {\n    [ATTRS_KEY]: root.attrs,\n  };\n  const contents = store.contents().sort(sortContentsByDepth);\n\n  for (const { path, kind } of contents) {\n    if (path === '/') continue;\n\n    const pathParts = path.split('/').filter(Boolean);\n    let currentNode = tree;\n\n    for (const [index, part] of pathParts.entries()) {\n      if (!(part in currentNode)) {\n        const isLeaf = index === pathParts.length - 1;\n\n        if (!isLeaf) {\n          currentNode[part] = {};\n        } else {\n          const absolutePath = `/${pathParts.slice(0, index + 1).join('/')}` as zarr.AbsolutePath;\n          const attrs = await readNodeAttrs(root, absolutePath, kind);\n\n          if (kind === 'array') {\n            const arrayMetadata = await readMetadataJson(store, absolutePath, 'array');\n            if (!arrayMetadata) {\n              throw new Error(`Missing array metadata for '${absolutePath}'`);\n            }\n\n            const leafNode: LazyZarrArray<zarr.DataType> = {\n              [ATTRS_KEY]: attrs,\n              [ZARRAY_KEY]: arrayMetadata,\n              get: () => zarr.open(root.resolve(absolutePath), { kind: 'array' }),\n            };\n            currentNode[part] = leafNode;\n          } else {\n            currentNode[part] = {\n              [ATTRS_KEY]: attrs,\n            };\n          }\n        }\n      }\n\n      currentNode = currentNode[part] as ZarrTree;\n    }\n  }\n\n  return tree;\n}\n\nasync function resolveListableStore(source: StoreReference): Promise<zarr.Listable<zarr.Readable>> {\n  const store = isReadableStore(source)\n    ? source\n    : new zarr.FetchStore(normalizeStringSource(source));\n\n  if (isListableStore(store)) {\n    return store;\n  }\n\n  try {\n    return await zarr.withConsolidatedMetadata(store as zarr.AsyncReadable);\n  } catch (defaultError) {\n    try {\n      return await zarr.withConsolidatedMetadata(store as zarr.AsyncReadable, {\n        format: 'v2',\n        metadataKey: 'zmetadata',\n      });\n    } catch {\n      throw defaultError;\n    }\n  }\n}\n\n/**\n * Open a zarr store or store-backed source and return a parsed tree representation.\n */\nexport async function openExtraConsolidated(\n  source: StoreReference\n): Promise<Result<ConsolidatedStore>> {\n  try {\n    const zarritaStore = await resolveListableStore(source);\n    const tree = await parseStoreContents(zarritaStore);\n    return Ok({ zarritaStore, tree });\n  } catch (error) {\n    const errorMessage = error instanceof Error ? error.message : String(error);\n    return Err(new Error(`Failed to open zarr store '${describeSource(source)}': ${errorMessage}`));\n  }\n}\n\n/**\n * Deep clone a ZarrTree, converting Symbol-keyed attrs to string keys for serialization/debugging\n */\nexport function serializeZarrTree(obj: ZarrTree | unknown): unknown {\n  if (obj === null || typeof obj !== 'object') return obj;\n\n  const result: Record<string, unknown> = {};\n\n  if (ATTRS_KEY in obj && obj[ATTRS_KEY]) {\n    result._attrs = obj[ATTRS_KEY];\n  }\n  if (ZARRAY_KEY in obj && obj[ZARRAY_KEY]) {\n    result._zarray = obj[ZARRAY_KEY];\n  }\n\n  for (const key in obj) {\n    if (Object.prototype.hasOwnProperty.call(obj, key)) {\n      // @ts-expect-error - Indexing unknown object for serialization.\n      const val = obj[key];\n      if (typeof val === 'function') {\n        result[key] = '<function>';\n      } else {\n        result[key] = serializeZarrTree(val);\n      }\n    }\n  }\n\n  return result;\n}\n\nexport type {\n  StoreReference,\n  ZarrTree,\n  ConsolidatedStore,\n  LazyZarrArray,\n  ZAttrsAny,\n} from './types';\nexport { ATTRS_KEY, ZARRAY_KEY } from './types';\nexport { createPrefixedStore } from './prefixedStore';\nexport {\n  createOpenJpegDecoder,\n  createOpenJphDecoder,\n  createWasmLocateFile,\n  registerJpeg2kCodec,\n  registerExperimentalHtj2kCodec,\n  type ImageCodecDecoder,\n  type OpenJpegFactory,\n  type OpenJphFactory,\n  type RegisterImageCodecOptions,\n} from './codecs';\nexport {\n  createOpenJphEncoder,\n  encodeHtj2kPlane,\n  loadOpenJphEncoder,\n  planeArrayForDtype,\n  type Htj2kEncodeOptions,\n  type Htj2kPlaneDtype,\n  type OpenJphEncoder,\n} from './htj2k-encode';\nexport {\n  loadOmeZarrMultiscalesFromStore,\n  type VivCompatiblePixelSource,\n  type RasterSelection,\n} from './omeZarr';\n\nexport type { Result } from './result';\nexport { Ok, Err, isOk, isErr, unwrap, unwrapOr } from 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+{"version":3,"file":"index.js","names":[],"sources":["../src/result.ts","../src/types.ts","../src/prefixedStore.ts","../src/codecs.ts","../src/htj2k-encode.ts","../src/omeZarr.ts","../src/index.ts"],"sourcesContent":["/**\n * Result type for explicit error handling without exceptions.\n * Inspired by Rust's Result<T, E>.\n *\n * This type is useful for operations that can fail, especially in zarr operations\n * where errors should be handled explicitly rather than thrown as exceptions.\n *\n * Note: This is a custom implementation for simplicity. We may review using\n * an existing Result library (such as neverthrow) in the future,\n * but for now this provides a lightweight, dependency-free solution.\n */\n\n/**\n * A Result type for explicit error handling without exceptions.\n * Inspired by Rust's Result<T, E>.\n */\nexport type Result<T, E = Error> = { ok: true; value: T } | { ok: false; error: E };\n\n/** Create a successful Result */\nexport const Ok = <T>(value: T): Result<T, never> => ({ ok: true, value });\n\n/** Create a failed Result */\nexport const Err = <E>(error: E): Result<never, E> => ({ ok: false, error });\n\n/** Type guard for Ok results */\nexport const isOk = <T, E>(result: Result<T, E>): result is { ok: true; value: T } => result.ok;\n\n/** Type guard for Err results */\nexport const isErr = <T, E>(result: Result<T, E>): result is { ok: false; error: E } => !result.ok;\n\n/**\n * Unwrap a Result, throwing if it's an error.\n * Use when you want to convert back to exception-based error handling.\n */\nexport const unwrap = <T, E>(result: Result<T, E>): T => {\n  if (result.ok) return result.value;\n  throw result.error instanceof Error ? result.error : new Error(String(result.error));\n};\n\n/**\n * Unwrap a Result with a default value for errors.\n */\nexport const unwrapOr = <T, E>(result: Result<T, E>, defaultValue: T): T => {\n  return result.ok ? result.value : defaultValue;\n};\n","import type * as zarr from 'zarrita';\n\n/**\n * Supported inputs for opening a store.\n */\nexport type StoreReference = string | zarr.Readable;\n\ntype Store = zarr.Readable;\n\n/**\n * Zarr attributes type - a record of string keys to unknown values\n */\nexport type ZAttrsAny = Record<string, unknown>;\n\n/**\n * Symbol key for storing zarr attributes in the tree structure\n */\nexport const ATTRS_KEY = Symbol('attrs');\n\n/**\n * Symbol key for storing zarr array metadata\n */\nexport const ZARRAY_KEY = Symbol('.zarray');\n\n/**\n * Lazy zarr array type - represents a zarr array with a `get()` method for loading it,\n * and `.zarray` from consolidated metadata.\n */\nexport type LazyZarrArray<T extends zarr.DataType> = {\n  [ATTRS_KEY]?: ZAttrsAny;\n  [ZARRAY_KEY]: ZAttrsAny;\n  get: () => Promise<zarr.Array<T>>;\n};\n\n/**\n * Zarr tree type\n *\n * This is a tree of zarr arrays and groups, with the leaves being lazy arrays.\n * It is used to represent the structure of the zarr store.\n * Leaf type subject to change.\n */\nexport interface ZarrTree {\n  [ATTRS_KEY]?: ZAttrsAny;\n  [key: string]: ZarrTree | LazyZarrArray<zarr.DataType>;\n}\n\n/**\n * Zarr v3 array node metadata\n */\nexport type ZarrV3ArrayNode = {\n  shape: number[];\n  data_type: string;\n  chunk_grid: {\n    name: string;\n    configuration: {\n      chunk_shape: number[];\n    };\n  };\n  chunk_key_encoding: {\n    name: string;\n    configuration: {\n      separator: string;\n    };\n  };\n  fill_value: number | string | boolean;\n  codecs: Array<{\n    name: string;\n    configuration?: Record<string, unknown>;\n  }>;\n  attributes: Record<string, unknown>;\n  dimension_names: string[];\n  zarr_format: number;\n  node_type: 'array';\n  storage_transformers: unknown[];\n};\n\n/**\n * Zarr v3 group node metadata\n */\nexport type ZarrV3GroupNode = {\n  attributes: Record<string, unknown>;\n  zarr_format: number;\n  consolidated_metadata: {\n    kind: string;\n    must_understand: boolean;\n    metadata: Record<string, unknown>;\n  };\n  node_type: 'group';\n};\n\n/**\n * Zarr v3 consolidated metadata structure (zarr.json)\n * The actual structure has metadata nested under consolidated_metadata.metadata\n * with path keys like \"images/blobs_image\", \"labels/blobs_labels\", etc.\n * Each entry can be either a group node or an array node.\n */\nexport type ZarrV3Metadata = {\n  attributes: Record<string, unknown>;\n  zarr_format: number;\n  consolidated_metadata: {\n    kind: string;\n    must_understand: boolean;\n    metadata: Record<string, ZarrV3GroupNode | ZarrV3ArrayNode>;\n  };\n  node_type: 'group';\n};\n\n/**\n * This type is liable to change in future - for now, it has `zarritaStore` which is the `ListableStore` from `zarrita`,\n * and `tree: ZarrTree` which has the object hierarchy as described in the consolidated metadata as a mostly \"Plain Old Javascript Object\",\n * but with (weakly typed) `Symbol`-keyed `attrs` & `.zarray` properties where available, and a `get()` on leaf nodes\n * for requesting array data.\n *\n * The use of `Symbol('attrs')` is intended to make these properties easy to access, but not appear when using `Object.keys()` etc.\n */\nexport type ConsolidatedStore = {\n  zarritaStore: zarr.Listable<Store>;\n  tree: ZarrTree;\n};\n","import type * as zarr from 'zarrita';\n\nfunction toAbsolutePath(path: string): zarr.AbsolutePath {\n  const trimmed = path.replace(/^\\/+|\\/+$/g, '');\n  // Zarrita brands absolute paths as template-literal types; normalization above enforces it.\n  return (trimmed ? `/${trimmed}` : '/') as zarr.AbsolutePath;\n}\n\nfunction joinAbsolutePath(prefix: string, key: zarr.AbsolutePath): zarr.AbsolutePath {\n  const normalizedPrefix = toAbsolutePath(prefix);\n  if (normalizedPrefix === '/') {\n    return key;\n  }\n  if (key === '/') {\n    return normalizedPrefix;\n  }\n  // Both sides are absolute Zarr paths; concatenating preserves the leading slash.\n  return `${normalizedPrefix}${key}` as zarr.AbsolutePath;\n}\n\n/**\n * Create a read-only store view rooted at `prefix`.\n *\n * This is useful when callers have a SpatialData root store but a downstream\n * reader expects the supplied store root to be an individual image/table group.\n */\nexport function createPrefixedStore(store: zarr.Readable, prefix: string): zarr.AsyncReadable {\n  return {\n    async get(key: zarr.AbsolutePath, opts?: zarr.GetOptions) {\n      return await store.get(joinAbsolutePath(prefix, key), opts);\n    },\n    getRange: store.getRange\n      ? async (key: zarr.AbsolutePath, range: zarr.RangeQuery, opts?: zarr.GetOptions) =>\n          await store.getRange?.(joinAbsolutePath(prefix, key), range, opts)\n      : undefined,\n  };\n}\n","import * as zarr from 'zarrita';\n\ntype ChunkMetadata<D extends zarr.DataType = zarr.DataType> = {\n  dataType: D;\n  shape: number[];\n  codecs: zarr.CodecMetadata[];\n  fillValue: zarr.Scalar<D> | null;\n};\n\n/** Chunk metadata from zarrita (camelCase) or fizarrita workers (snake_case). */\ntype ChunkMetadataInput = Partial<ChunkMetadata> & {\n  data_type?: zarr.DataType;\n  chunk_shape?: number[];\n  fill_value?: zarr.Scalar<zarr.DataType> | null;\n};\n\nfunction normalizeChunkMetadata(meta: ChunkMetadataInput): ChunkMetadata {\n  const dataType = meta.dataType ?? meta.data_type;\n  const shape = meta.shape ?? meta.chunk_shape;\n  if (!dataType) {\n    throw new Error('Chunk metadata is missing dataType / data_type.');\n  }\n  if (!shape) {\n    throw new Error('Chunk metadata is missing shape / chunk_shape.');\n  }\n  return {\n    dataType,\n    shape,\n    codecs: meta.codecs ?? [],\n    fillValue: meta.fillValue ?? meta.fill_value ?? null,\n  };\n}\n\ntype Codec = {\n  kind?: 'array_to_array' | 'array_to_bytes' | 'bytes_to_bytes';\n  encode(data: unknown): Promise<Uint8Array> | Uint8Array;\n  decode(data: Uint8Array): Promise<zarr.Chunk<zarr.DataType>> | zarr.Chunk<zarr.DataType>;\n};\n\ntype CodecEntry = {\n  kind?: Codec['kind'];\n  fromConfig: (config: unknown, meta: ChunkMetadata) => Codec;\n};\n\nexport type DecodedImageBytes = ArrayBuffer | ArrayBufferView;\n\nexport type ImageCodecDecoder = (\n  encoded: Uint8Array,\n  meta: ChunkMetadata,\n  config: unknown\n) => Promise<DecodedImageBytes> | DecodedImageBytes;\n\nexport interface RegisterImageCodecOptions {\n  /**\n   * Override the codec ids registered into Zarrita's global registry.\n   * Defaults include the standard registry id and a pragmatic alias.\n   */\n  ids?: string[];\n  /** Custom decoder used by tests or applications with their own WASM loading. */\n  decoder?: ImageCodecDecoder;\n  /** Optional Emscripten locateFile hook for bundled WASM decoders. */\n  locateFile?: (path: string, prefix: string) => string;\n}\n\nexport type OpenJpegFactory = (opts?: {\n  locateFile?: RegisterImageCodecOptions['locateFile'];\n}) => Promise<Record<string, unknown>> | Record<string, unknown>;\n\nexport type OpenJphFactory = (opts?: {\n  locateFile?: RegisterImageCodecOptions['locateFile'];\n}) => Promise<Record<string, unknown>> | Record<string, unknown>;\n\n/** Emscripten locateFile hook that resolves bundled codec WASM to a bundler URL. */\nexport function createWasmLocateFile(\n  wasmUrl: string\n): NonNullable<RegisterImageCodecOptions['locateFile']> {\n  return (path, _prefix) => (path.endsWith('.wasm') ? wasmUrl : path);\n}\n\nconst JPEG2K_CODEC_IDS = ['imagecodecs_jpeg2k', 'numcodecs.imagecodecs_jpeg2k', 'jpeg2k'];\nconst HTJ2K_OPENJPH_CODEC_ID = 'experimental.openjph_htj2k';\nconst HTJ2K_LEGACY_CODEC_IDS = [\n  'experimental.imagecodecs_htj2k',\n  'imagecodecs_htj2k',\n  'numcodecs.imagecodecs_htj2k',\n];\nconst HTJ2K_CODEC_IDS = [HTJ2K_OPENJPH_CODEC_ID, ...HTJ2K_LEGACY_CODEC_IDS];\n\nconst dynamicImport = new Function('specifier', 'return import(specifier)') as (\n  specifier: string\n) => Promise<Record<string, unknown>>;\n\nfunction unsupportedEncode(codecName: string): never {\n  throw new Error(`${codecName} encode is not implemented in zarrextra; decode-only for now.`);\n}\n\nfunction toUint8Array(data: DecodedImageBytes): Uint8Array {\n  if (data instanceof Uint8Array) {\n    return data;\n  }\n  if (ArrayBuffer.isView(data)) {\n    return new Uint8Array(data.buffer, data.byteOffset, data.byteLength);\n  }\n  return new Uint8Array(data);\n}\n\nfunction copyArrayBufferView(bytes: Uint8Array): ArrayBuffer {\n  const copy = new ArrayBuffer(bytes.byteLength);\n  new Uint8Array(copy).set(bytes);\n  return copy;\n}\n\nfunction product(values: number[]): number {\n  return values.reduce((acc, value) => acc * value, 1);\n}\n\nfunction getStrides(shape: number[]): number[] {\n  const stride = new Array<number>(shape.length);\n  let step = 1;\n  for (let index = shape.length - 1; index >= 0; index -= 1) {\n    stride[index] = step;\n    step *= shape[index] ?? 1;\n  }\n  return stride;\n}\n\nfunction typedArrayFromDecodedBytes(\n  decoded: DecodedImageBytes,\n  meta: ChunkMetadata\n): zarr.TypedArray<zarr.DataType> {\n  if (Array.isArray(decoded)) {\n    throw new Error('Image codec decoder returned a plain array; expected binary data.');\n  }\n\n  const decodedBytes = toUint8Array(decoded);\n  const buffer = copyArrayBufferView(decodedBytes);\n  const expectedValues = product(meta.shape);\n\n  let data: zarr.TypedArray<zarr.DataType>;\n  switch (meta.dataType) {\n    case 'uint8':\n      data = new Uint8Array(buffer);\n      break;\n    case 'int8':\n      data = new Int8Array(buffer);\n      break;\n    case 'uint16':\n      data = new Uint16Array(buffer);\n      break;\n    case 'int16':\n      data = new Int16Array(buffer);\n      break;\n    case 'uint32':\n      data = new Uint32Array(buffer);\n      break;\n    case 'int32':\n      data = new Int32Array(buffer);\n      break;\n    case 'float32':\n      data = new Float32Array(buffer);\n      break;\n    case 'float64':\n      data = new Float64Array(buffer);\n      break;\n    default:\n      throw new Error(`Image codec does not support Zarrita dtype '${meta.dataType}'.`);\n  }\n\n  if (data.length !== expectedValues) {\n    throw new Error(\n      `Image codec decoded ${data.length} values, expected ${expectedValues} for chunk shape ` +\n        `[${meta.shape.join(', ')}].`\n    );\n  }\n\n  return data;\n}\n\nfunction createImageCodecEntry(\n  codecName: string,\n  decoder: ImageCodecDecoder\n): () => Promise<CodecEntry> {\n  return async () => ({\n    kind: 'array_to_bytes',\n    fromConfig(config: unknown, meta: ChunkMetadataInput): Codec {\n      const chunkMeta = normalizeChunkMetadata(meta);\n      return {\n        kind: 'array_to_bytes',\n        encode: () => unsupportedEncode(codecName),\n        async decode(encoded: Uint8Array) {\n          const decoded = await decoder(encoded, chunkMeta, config);\n          return {\n            data: typedArrayFromDecodedBytes(decoded, chunkMeta),\n            shape: chunkMeta.shape,\n            stride: getStrides(chunkMeta.shape),\n          };\n        },\n      };\n    },\n  });\n}\n\n/**\n * Adapt zarrita's built-in registry codecs for fizarrita's worker metadata\n * (`data_type`, `chunk_shape`) before fizarrita's codec worker loads.\n */\nexport function wrapZarrRegistryForFizarritaWorker() {\n  const { registry } = zarr;\n  for (const [id, factory] of [...registry.entries()]) {\n    registry.set(id, async () => {\n      const entry = await factory();\n      if (typeof entry.fromConfig !== 'function') {\n        return entry;\n      }\n      const fromConfig = entry.fromConfig.bind(entry);\n      return {\n        ...entry,\n        fromConfig(config: unknown, meta: ChunkMetadataInput) {\n          return fromConfig(config, normalizeChunkMetadata(meta));\n        },\n      };\n    });\n  }\n}\n\nexport function createOpenJpegDecoder(\n  factory: OpenJpegFactory,\n  options: Pick<RegisterImageCodecOptions, 'locateFile'> = {}\n): ImageCodecDecoder {\n  let runtimePromise: Promise<Record<string, unknown>> | undefined;\n  async function getRuntime() {\n    runtimePromise ??= Promise.resolve(\n      factory({\n        locateFile: options.locateFile,\n      })\n    );\n    return await runtimePromise;\n  }\n  return async (encoded) => {\n    const runtime = await getRuntime();\n    const Decoder = runtime.J2KDecoder as\n      | (new () => {\n          getEncodedBuffer(length: number): Uint8Array;\n          decode(): void;\n          getDecodedBuffer(): DecodedImageBytes;\n        })\n      | undefined;\n    if (!Decoder) {\n      throw new Error('OpenJPEG runtime does not expose J2KDecoder.');\n    }\n    const decoder = new Decoder();\n    decoder.getEncodedBuffer(encoded.length).set(encoded);\n    decoder.decode();\n    return decoder.getDecodedBuffer();\n  };\n}\n\nasync function loadOpenJpegDecoder(options: RegisterImageCodecOptions): Promise<ImageCodecDecoder> {\n  const mod = await dynamicImport('@cornerstonejs/codec-openjpeg/decode').catch(() =>\n    dynamicImport('@cornerstonejs/codec-openjpeg')\n  );\n  const factory = (mod.default ?? mod.OpenJPEGJS ?? mod.OpenJPEGWASM ?? mod) as unknown;\n  if (typeof factory !== 'function') {\n    throw new Error('Could not find an OpenJPEG factory export in @cornerstonejs/codec-openjpeg.');\n  }\n  return createOpenJpegDecoder(factory as OpenJpegFactory, options);\n}\n\ntype Htj2kDecoderClass = new () => {\n  getEncodedBuffer(length: number): Uint8Array;\n  decode(): void;\n  getDecodedBuffer(): DecodedImageBytes;\n};\n\nexport function createOpenJphDecoder(\n  factory: OpenJphFactory,\n  options: Pick<RegisterImageCodecOptions, 'locateFile'> = {}\n): ImageCodecDecoder {\n  let runtimePromise: Promise<Record<string, unknown>> | undefined;\n  async function getRuntime() {\n    runtimePromise ??= Promise.resolve(\n      factory({\n        locateFile: options.locateFile,\n      })\n    );\n    return await runtimePromise;\n  }\n  return async (encoded) => {\n    const runtime = await getRuntime();\n    const Decoder = (runtime.HTJ2KDecoder ?? runtime.JPHDecoder ?? runtime.J2KDecoder) as\n      | Htj2kDecoderClass\n      | undefined;\n    if (!Decoder) {\n      throw new Error(\n        'OpenJPH runtime does not expose a known decoder class; pass a custom decoder option.'\n      );\n    }\n    const decoder = new Decoder();\n    decoder.getEncodedBuffer(encoded.length).set(encoded);\n    decoder.decode();\n    return decoder.getDecodedBuffer();\n  };\n}\n\nasync function loadOpenJphDecoder(options: RegisterImageCodecOptions): Promise<ImageCodecDecoder> {\n  const factoryMod = await dynamicImport('@cornerstonejs/codec-openjph/wasmjs').catch(() =>\n    dynamicImport('@cornerstonejs/codec-openjph')\n  );\n  const factory = (factoryMod.default ?? factoryMod.OpenJPHJS ?? factoryMod) as unknown;\n  if (typeof factory !== 'function') {\n    throw new Error('Could not find an OpenJPH factory export in @cornerstonejs/codec-openjph.');\n  }\n  const wasmMod = await dynamicImport('@cornerstonejs/codec-openjph/wasm').catch(() => null);\n  const wasmAsset = wasmMod ? ((wasmMod.default ?? wasmMod) as string | undefined) : undefined;\n  const locateFile =\n    options.locateFile ?? (wasmAsset ? createWasmLocateFile(wasmAsset) : undefined);\n  return createOpenJphDecoder(factory as OpenJphFactory, { locateFile });\n}\n\nfunction registerImageCodec(\n  codecName: string,\n  defaultIds: string[],\n  defaultDecoder: (options: RegisterImageCodecOptions) => Promise<ImageCodecDecoder>,\n  options: RegisterImageCodecOptions = {}\n) {\n  const ids = options.ids ?? defaultIds;\n  let decoderPromise: Promise<ImageCodecDecoder> | undefined;\n  const getDecoder = async () => {\n    decoderPromise ??= Promise.resolve(options.decoder ?? defaultDecoder(options));\n    return await decoderPromise;\n  };\n\n  for (const id of ids) {\n    (zarr.registry as Map<string, () => Promise<unknown>>).set(\n      id,\n      createImageCodecEntry(codecName, async (encoded, meta, config) => {\n        const decoder = await getDecoder();\n        return await decoder(encoded, meta, config);\n      })\n    );\n  }\n}\n\n/** Register decode support for the standard `imagecodecs_jpeg2k` Zarr codec id. */\nexport function registerJpeg2kCodec(options: RegisterImageCodecOptions = {}) {\n  registerImageCodec('imagecodecs_jpeg2k', JPEG2K_CODEC_IDS, loadOpenJpegDecoder, options);\n}\n\n/**\n * Register HTJ2K decode support for OpenJPH-encoded stores and legacy ids.\n *\n * New writes use `experimental.openjph_htj2k`. Older fixtures may use\n * `experimental.imagecodecs_htj2k`; both decode through the same OpenJPH WASM path.\n */\nexport function registerExperimentalHtj2kCodec(options: RegisterImageCodecOptions = {}) {\n  registerImageCodec(\n    HTJ2K_OPENJPH_CODEC_ID,\n    HTJ2K_CODEC_IDS,\n    loadOpenJphDecoder,\n    options\n  );\n}\n","import { createWasmLocateFile, type OpenJphFactory, type RegisterImageCodecOptions } from './codecs';\n\nexport type Htj2kPlaneDtype = 'uint8' | 'int8' | 'uint16' | 'int16';\n\nexport type Htj2kEncodeOptions = {\n  /** Lossless when true. Defaults to true for fixture-style writes. */\n  reversible?: boolean;\n  /** OpenJPH quantization factor when irreversible (lower = higher fidelity, larger output). */\n  quality?: number;\n  locateFile?: RegisterImageCodecOptions['locateFile'];\n};\n\ntype Htj2kFrameInfo = {\n  width: number;\n  height: number;\n  bitsPerSample: 8 | 16;\n  isSigned: boolean;\n  componentCount: 1;\n  isUsingColorTransform: false;\n};\n\ntype Htj2kEncoderClass = new () => {\n  /** OpenJPH WASM API: `setQuality(reversible, quality)`; quality is a quantization factor (lower = better). */\n  setQuality(reversible: boolean, quality: number): void;\n  getDecodedBuffer(frame: Htj2kFrameInfo): ArrayBufferView;\n  encode(): void;\n  getEncodedBuffer(): Uint8Array;\n};\n\nexport type OpenJphEncoder = (\n  plane: Uint8Array | Uint16Array | Int8Array | Int16Array,\n  size: { width: number; height: number },\n  options?: Pick<Htj2kEncodeOptions, 'reversible' | 'quality'>\n) => Promise<Uint8Array>;\n\nconst dynamicImport = new Function('specifier', 'return import(specifier)') as (\n  specifier: string\n) => Promise<Record<string, unknown>>;\n\nfunction bitsPerSampleForPlane(\n  plane: Uint8Array | Uint16Array | Int8Array | Int16Array\n): 8 | 16 {\n  return plane instanceof Uint16Array || plane instanceof Int16Array ? 16 : 8;\n}\n\nfunction isSignedPlane(plane: Uint8Array | Uint16Array | Int8Array | Int16Array): boolean {\n  return plane instanceof Int8Array || plane instanceof Int16Array;\n}\n\nfunction frameInfoForPlane(\n  plane: Uint8Array | Uint16Array | Int8Array | Int16Array,\n  size: { width: number; height: number }\n): Htj2kFrameInfo {\n  const { width, height } = size;\n  const expectedValues = width * height;\n  if (plane.length !== expectedValues) {\n    throw new Error(\n      `HTJ2K plane has ${plane.length} samples, expected ${expectedValues} for ${width}x${height}.`\n    );\n  }\n  return {\n    width,\n    height,\n    bitsPerSample: bitsPerSampleForPlane(plane),\n    isSigned: isSignedPlane(plane),\n    componentCount: 1,\n    isUsingColorTransform: false,\n  };\n}\n\n/** Create an HTJ2K encoder backed by an OpenJPH WASM factory. */\nexport function createOpenJphEncoder(\n  factory: OpenJphFactory,\n  options: Pick<Htj2kEncodeOptions, 'locateFile'> = {}\n): OpenJphEncoder {\n  let runtimePromise: Promise<Record<string, unknown>> | undefined;\n\n  async function getRuntime() {\n    runtimePromise ??= Promise.resolve(\n      factory({\n        locateFile: options.locateFile,\n      })\n    );\n    return await runtimePromise;\n  }\n\n  return async (plane, size, encodeOptions = {}) => {\n    const runtime = await getRuntime();\n    const Encoder = runtime.HTJ2KEncoder as Htj2kEncoderClass | undefined;\n    if (!Encoder) {\n      throw new Error('OpenJPH runtime does not expose HTJ2KEncoder.');\n    }\n\n    const reversible = encodeOptions.reversible ?? true;\n    const quality = encodeOptions.quality ?? 0;\n    const frame = frameInfoForPlane(plane, size);\n    const encoder = new Encoder();\n    encoder.setQuality(reversible, quality);\n\n    const buffer = encoder.getDecodedBuffer(frame);\n    const target =\n      frame.bitsPerSample === 16\n        ? new Uint16Array(buffer.buffer, buffer.byteOffset, plane.length)\n        : new Uint8Array(buffer.buffer, buffer.byteOffset, plane.length);\n    target.set(plane);\n    encoder.encode();\n    return encoder.getEncodedBuffer();\n  };\n}\n\n/** Load the optional OpenJPH WASM encoder from @cornerstonejs/codec-openjph. */\nexport async function loadOpenJphEncoder(\n  options: Htj2kEncodeOptions = {}\n): Promise<OpenJphEncoder> {\n  const factoryMod = await dynamicImport('@cornerstonejs/codec-openjph/wasmjs').catch(() =>\n    dynamicImport('@cornerstonejs/codec-openjph')\n  );\n  const factory = (factoryMod.default ?? factoryMod.OpenJPHJS ?? factoryMod) as unknown;\n  if (typeof factory !== 'function') {\n    throw new Error('Could not find an OpenJPH factory export in @cornerstonejs/codec-openjph.');\n  }\n  const wasmMod = await dynamicImport('@cornerstonejs/codec-openjph/wasm').catch(() => null);\n  const wasmAsset = wasmMod ? ((wasmMod.default ?? wasmMod) as string | undefined) : undefined;\n  const locateFile =\n    options.locateFile ?? (wasmAsset ? createWasmLocateFile(wasmAsset) : undefined);\n  return createOpenJphEncoder(factory as OpenJphFactory, { locateFile });\n}\n\nexport function planeArrayForDtype(\n  dtype: Htj2kPlaneDtype,\n  bytes: Uint8Array\n) {\n  switch (dtype) {\n    case 'uint8':\n      return bytes;\n    case 'int8':\n      return new Int8Array(bytes.buffer, bytes.byteOffset, bytes.byteLength);\n    case 'uint16':\n      return new Uint16Array(bytes.buffer, bytes.byteOffset, bytes.byteLength / 2);\n    case 'int16':\n      return new Int16Array(bytes.buffer, bytes.byteOffset, bytes.byteLength / 2);\n    default:\n      throw new Error(`Unsupported HTJ2K plane dtype '${dtype}'.`);\n  }\n}\n\n/** Encode one 2D plane to an HTJ2K bitstream. */\nexport async function encodeHtj2kPlane(\n  plane: Uint8Array | Uint16Array | Int8Array | Int16Array,\n  size: { width: number; height: number },\n  options: Htj2kEncodeOptions = {}\n): Promise<Uint8Array> {\n  const encoder = await loadOpenJphEncoder(options);\n  return await encoder(plane, size, options);\n}\n","import * as zarr from 'zarrita';\nimport { getZarrChunk } from './chunkDecode';\n\nexport type RasterSelection = Record<string, number> | number[];\n\nexport interface VivCompatiblePixelSource {\n  labels: string[];\n  tileSize: number;\n  shape: number[];\n  dtype: string;\n  meta?: { physicalSizes?: { x?: { size: number; unit: string } } };\n  getRaster(props: { selection: RasterSelection; signal?: AbortSignal }): Promise<{\n    data: unknown;\n    width: number;\n    height: number;\n  }>;\n  getTile(props: {\n    x: number;\n    y: number;\n    selection: RasterSelection;\n    signal?: AbortSignal;\n  }): Promise<{\n    data: unknown;\n    width: number;\n    height: number;\n  }>;\n  onTileError(err: Error): void;\n}\n\ntype OmeAxis = { name: string; type?: string; unit?: string };\ntype OmeMultiscaleAttrs = {\n  datasets?: Array<{ path: string }>;\n  axes?: Array<string | OmeAxis>;\n};\ntype OmeRootAttrs = {\n  multiscales?: OmeMultiscaleAttrs[];\n  omero?: unknown;\n  [key: string]: unknown;\n};\n\nfunction isObject(value: unknown): value is Record<string, unknown> {\n  return typeof value === 'object' && value !== null && !Array.isArray(value);\n}\n\nfunction isOmeAxis(value: unknown): value is OmeAxis {\n  return isObject(value) && typeof value.name === 'string';\n}\n\nfunction isOmeDataset(value: unknown): value is { path: string } {\n  return isObject(value) && typeof value.path === 'string';\n}\n\nfunction isOmeMultiscaleAttrs(value: unknown): value is OmeMultiscaleAttrs {\n  if (!isObject(value)) return false;\n  const datasets = value.datasets;\n  if (datasets !== undefined) {\n    if (!Array.isArray(datasets)) return false;\n    if (!datasets.every(isOmeDataset)) return false;\n  }\n  const axes = value.axes;\n  if (axes !== undefined) {\n    if (!Array.isArray(axes)) return false;\n    if (!axes.every((axis) => typeof axis === 'string' || isOmeAxis(axis))) return false;\n  }\n  return true;\n}\n\nfunction getOmeRootAttrs(attrs: Record<string, unknown>): OmeRootAttrs {\n  const candidate = isObject(attrs.ome) ? attrs.ome : attrs;\n  if (!('multiscales' in candidate)) {\n    return candidate;\n  }\n  if (!Array.isArray(candidate.multiscales)) {\n    throw new Error('OME-Zarr `multiscales` attribute must be an array.');\n  }\n  if (!candidate.multiscales.every(isOmeMultiscaleAttrs)) {\n    throw new Error('OME-Zarr `multiscales` entries must contain valid dataset paths and axes.');\n  }\n  return candidate;\n}\n\nfunction isInterleaved(shape: number[], labels?: string[]) {\n  const lastDimSize = shape[shape.length - 1];\n  if (lastDimSize !== 3 && lastDimSize !== 4) {\n    return false;\n  }\n  if (labels?.some((label) => label.toLowerCase() === 'c')) {\n    return false;\n  }\n  return true;\n}\n\nfunction axisIndex(labels: string[], axis: 'x' | 'y'): number {\n  const index = labels.findIndex((label) => label.toLowerCase() === axis);\n  if (index === -1) {\n    throw new Error(`OME-Zarr labels must include '${axis}' axis.`);\n  }\n  return index;\n}\n\nfunction spatialAxisIndices(shape: number[], labels: string[]): { xIndex: number; yIndex: number } {\n  if (isInterleaved(shape, labels)) {\n    const len = shape.length;\n    return { yIndex: len - 3, xIndex: len - 2 };\n  }\n  return { yIndex: axisIndex(labels, 'y'), xIndex: axisIndex(labels, 'x') };\n}\n\nfunction spatialDimensions(shape: number[], labels: string[]): [number, number] {\n  const { xIndex, yIndex } = spatialAxisIndices(shape, labels);\n  return [shape[yIndex] ?? 0, shape[xIndex] ?? 0];\n}\n\nfunction spatialDimensionsFromChunk(\n  chunkShape: number[],\n  sourceShape: number[],\n  labels: string[]\n): [number, number] {\n  if (isInterleaved(sourceShape, labels)) {\n    const [height, width] = chunkShape.slice(-3);\n    return [height ?? 0, width ?? 0];\n  }\n  if (chunkShape.length >= 2) {\n    const [height, width] = chunkShape.slice(-2);\n    return [height ?? 0, width ?? 0];\n  }\n  return [chunkShape[0] ?? 0, 0];\n}\n\nfunction getImageSize(source: { shape: number[]; labels: string[] }) {\n  const [height, width] = spatialDimensions(source.shape, source.labels);\n  return { height, width };\n}\n\nfunction prevPowerOf2(x: number): number {\n  return 2 ** Math.floor(Math.log2(x));\n}\n\nfunction guessTileSize(arr: zarr.Array<zarr.DataType>, labels: string[]): number {\n  if (isInterleaved(arr.shape, labels)) {\n    const [yChunk, xChunk] = arr.chunks.slice(-3);\n    return prevPowerOf2(Math.min(yChunk ?? 1, xChunk ?? 1));\n  }\n  const yChunk = arr.chunks[axisIndex(labels, 'y')];\n  const xChunk = arr.chunks[axisIndex(labels, 'x')];\n  return prevPowerOf2(Math.min(yChunk ?? 1, xChunk ?? 1));\n}\n\nfunction labelsFromAxes(axes: OmeMultiscaleAttrs['axes'] | undefined): string[] {\n  if (!axes) return ['t', 'c', 'z', 'y', 'x'];\n  return axes.map((axis) => (typeof axis === 'string' ? axis : axis.name));\n}\n\nfunction normalizeDtype(dtype: string): string {\n  const lookup: Record<string, string> = {\n    u1: 'Uint8',\n    u2: 'Uint16',\n    u4: 'Uint32',\n    i1: 'Int8',\n    i2: 'Int16',\n    i4: 'Int32',\n    f4: 'Float32',\n    f8: 'Float64',\n    uint8: 'Uint8',\n    uint16: 'Uint16',\n    uint32: 'Uint32',\n    int8: 'Int8',\n    int16: 'Int16',\n    int32: 'Int32',\n    float32: 'Float32',\n    float64: 'Float64',\n  };\n  return lookup[dtype.toLowerCase()] ?? dtype.charAt(0).toUpperCase() + dtype.slice(1);\n}\n\nfunction getIndexer(labels: string[]) {\n  const labelSet = new Set(labels);\n  if (labelSet.size !== labels.length) {\n    throw new Error('OME-Zarr labels must be unique.');\n  }\n  return (selection: RasterSelection): Array<number | zarr.Slice | null> => {\n    if (Array.isArray(selection)) {\n      return [...selection];\n    }\n    const indexed: Array<number | zarr.Slice | null> = Array(labels.length).fill(0);\n    for (const [key, value] of Object.entries(selection)) {\n      const index = labels.indexOf(key);\n      if (index === -1) {\n        throw new Error(`Invalid OME-Zarr selection axis '${key}'.`);\n      }\n      indexed[index] = value;\n    }\n    return indexed;\n  };\n}\n\nclass BoundsCheckError extends Error {}\n\nclass ZarrPixelSource implements VivCompatiblePixelSource {\n  private readonly indexer: ReturnType<typeof getIndexer>;\n\n  constructor(\n    private readonly data: zarr.Array<zarr.DataType>,\n    public readonly labels: string[],\n    public readonly tileSize: number\n  ) {\n    this.indexer = getIndexer(labels);\n  }\n\n  get shape() {\n    return this.data.shape;\n  }\n\n  get dtype() {\n    return normalizeDtype(this.data.dtype);\n  }\n\n  private chunkIndex(\n    selection: RasterSelection,\n    tile: { x: number | zarr.Slice | null; y: number | zarr.Slice | null }\n  ) {\n    const { xIndex, yIndex } = spatialAxisIndices(this.data.shape, this.labels);\n    const sel = this.indexer(selection);\n    sel[xIndex] = tile.x;\n    sel[yIndex] = tile.y;\n    return sel;\n  }\n\n  private getSlices(x: number, y: number) {\n    const { height, width } = getImageSize(this);\n    const xStart = x * this.tileSize;\n    const xStop = Math.min((x + 1) * this.tileSize, width);\n    const yStart = y * this.tileSize;\n    const yStop = Math.min((y + 1) * this.tileSize, height);\n\n    if (xStart >= xStop || yStart >= yStop) {\n      throw new BoundsCheckError('Tile slice is zero-sized or inverted.');\n    }\n    if (xStart < 0 || yStart < 0 || xStop > width || yStop > height) {\n      throw new BoundsCheckError('Tile slice is out of bounds.');\n    }\n\n    return [zarr.slice(xStart, xStop), zarr.slice(yStart, yStop)];\n  }\n\n  private async getRaw(\n    selection: Array<number | zarr.Slice | null>,\n    signal?: AbortSignal\n  ): Promise<zarr.Chunk<zarr.DataType>> {\n    return await getZarrChunk(this.data, selection, { signal });\n  }\n\n  async getRaster({ selection, signal }: { selection: RasterSelection; signal?: AbortSignal }) {\n    const sel = this.chunkIndex(selection, { x: null, y: null });\n    const result = await this.getRaw(sel, signal);\n    const [height, width] = spatialDimensionsFromChunk(\n      result.shape,\n      this.data.shape,\n      this.labels\n    );\n    return { data: result.data, width, height };\n  }\n\n  async getTile({\n    x,\n    y,\n    selection,\n    signal,\n  }: {\n    x: number;\n    y: number;\n    selection: RasterSelection;\n    signal?: AbortSignal;\n  }) {\n    const [xSlice, ySlice] = this.getSlices(x, y);\n    const sel = this.chunkIndex(selection, { x: xSlice, y: ySlice });\n    const result = await this.getRaw(sel, signal);\n    const [height, width] = spatialDimensionsFromChunk(\n      result.shape,\n      this.data.shape,\n      this.labels\n    );\n    return { data: result.data, width, height };\n  }\n\n  onTileError(err: Error) {\n    if (!(err instanceof BoundsCheckError)) {\n      throw err;\n    }\n  }\n}\n\nasync function loadMultiscales(store: zarr.AsyncReadable) {\n  const readable = await zarr.withMaybeConsolidatedMetadata(store);\n  const root = zarr.root(readable);\n  const group = await zarr.open(root, { kind: 'group' });\n  const rootAttrs = getOmeRootAttrs(group.attrs);\n  const firstMultiscale = rootAttrs.multiscales?.[0];\n  const paths: string[] = firstMultiscale?.datasets?.map((dataset) => dataset.path) ?? ['0'];\n  const labels = labelsFromAxes(firstMultiscale?.axes);\n  const data: Array<zarr.Array<zarr.DataType>> = await Promise.all(\n    paths.map((path: string) => zarr.open(root.resolve(path), { kind: 'array' }))\n  );\n  return { data, labels, rootAttrs };\n}\n\n/** Load an OME-Zarr multiscale image from a Zarrita readable store. */\nexport async function loadOmeZarrMultiscalesFromStore(\n  store: zarr.AsyncReadable\n): Promise<VivCompatiblePixelSource[]> {\n  const { data, labels } = await loadMultiscales(store);\n  if (data.length === 0) {\n    throw new Error('OME-Zarr multiscale dataset is empty or has no valid arrays.');\n  }\n  const tileSize = guessTileSize(data[0], labels);\n  return data.map((arr: zarr.Array<zarr.DataType>) => new ZarrPixelSource(arr, labels, tileSize));\n}\n","import * as zarr from 'zarrita';\nimport { Err, Ok, type Result } from './result';\nimport type {\n  ConsolidatedStore,\n  LazyZarrArray,\n  StoreReference,\n  ZAttrsAny,\n  ZarrTree,\n} from './types';\nimport { ATTRS_KEY, ZARRAY_KEY } from './types';\n\nconst decoder = new TextDecoder();\n\nfunction isReadableStore(source: StoreReference): source is zarr.Readable {\n  return typeof source !== 'string';\n}\n\nfunction isListableStore(store: zarr.Readable): store is zarr.Listable<zarr.Readable> {\n  return 'contents' in store && typeof store.contents === 'function';\n}\n\nfunction normalizeStringSource(source: string): string {\n  return source.replace(/\\/+$/, '');\n}\n\nfunction describeSource(source: StoreReference): string {\n  return typeof source === 'string' ? source : '[store instance]';\n}\n\nfunction metadataKeysForPath(\n  path: zarr.AbsolutePath,\n  kind: 'array' | 'group'\n): zarr.AbsolutePath[] {\n  const basePath = path === '/' ? '' : path;\n  if (kind === 'array') {\n    return [`${basePath}/zarr.json`, `${basePath}/.zarray`] as zarr.AbsolutePath[];\n  }\n  return [`${basePath}/zarr.json`, `${basePath}/.zgroup`] as zarr.AbsolutePath[];\n}\n\nasync function readMetadataJson(\n  store: zarr.Readable,\n  path: zarr.AbsolutePath,\n  kind: 'array' | 'group'\n): Promise<ZAttrsAny | undefined> {\n  for (const metadataKey of metadataKeysForPath(path, kind)) {\n    const bytes = await store.get(metadataKey);\n    if (bytes) {\n      return JSON.parse(decoder.decode(bytes)) as ZAttrsAny;\n    }\n  }\n  return undefined;\n}\n\nasync function readNodeAttrs(\n  root: zarr.Group<zarr.Readable>,\n  path: zarr.AbsolutePath,\n  kind: 'array' | 'group'\n): Promise<ZAttrsAny> {\n  if (path === '/') {\n    return root.attrs;\n  }\n\n  const node =\n    kind === 'array'\n      ? await zarr.open(root.resolve(path), { kind: 'array' })\n      : await zarr.open(root.resolve(path), { kind: 'group' });\n  return node.attrs;\n}\n\nfunction sortContentsByDepth(\n  a: { path: zarr.AbsolutePath },\n  b: { path: zarr.AbsolutePath }\n): number {\n  const depthA = a.path.split('/').filter(Boolean).length;\n  const depthB = b.path.split('/').filter(Boolean).length;\n  return depthA - depthB;\n}\n\nasync function parseStoreContents(store: zarr.Listable<zarr.Readable>): Promise<ZarrTree> {\n  const root = await zarr.open(store, { kind: 'group' });\n  const tree: ZarrTree = {\n    [ATTRS_KEY]: root.attrs,\n  };\n  const contents = store.contents().sort(sortContentsByDepth);\n\n  for (const { path, kind } of contents) {\n    if (path === '/') continue;\n\n    const pathParts = path.split('/').filter(Boolean);\n    let currentNode = tree;\n\n    for (const [index, part] of pathParts.entries()) {\n      if (!(part in currentNode)) {\n        const isLeaf = index === pathParts.length - 1;\n\n        if (!isLeaf) {\n          currentNode[part] = {};\n        } else {\n          const absolutePath = `/${pathParts.slice(0, index + 1).join('/')}` as zarr.AbsolutePath;\n          const attrs = await readNodeAttrs(root, absolutePath, kind);\n\n          if (kind === 'array') {\n            const arrayMetadata = await readMetadataJson(store, absolutePath, 'array');\n            if (!arrayMetadata) {\n              throw new Error(`Missing array metadata for '${absolutePath}'`);\n            }\n\n            const leafNode: LazyZarrArray<zarr.DataType> = {\n              [ATTRS_KEY]: attrs,\n              [ZARRAY_KEY]: arrayMetadata,\n              get: () => zarr.open(root.resolve(absolutePath), { kind: 'array' }),\n            };\n            currentNode[part] = leafNode;\n          } else {\n            currentNode[part] = {\n              [ATTRS_KEY]: attrs,\n            };\n          }\n        }\n      }\n\n      currentNode = currentNode[part] as ZarrTree;\n    }\n  }\n\n  return tree;\n}\n\nasync function resolveListableStore(source: StoreReference): Promise<zarr.Listable<zarr.Readable>> {\n  const store = isReadableStore(source)\n    ? source\n    : new zarr.FetchStore(normalizeStringSource(source));\n\n  if (isListableStore(store)) {\n    return store;\n  }\n\n  try {\n    return await zarr.withConsolidatedMetadata(store as zarr.AsyncReadable);\n  } catch (defaultError) {\n    try {\n      return await zarr.withConsolidatedMetadata(store as zarr.AsyncReadable, {\n        format: 'v2',\n        metadataKey: 'zmetadata',\n      });\n    } catch {\n      throw defaultError;\n    }\n  }\n}\n\n/**\n * Open a zarr store or store-backed source and return a parsed tree representation.\n */\nexport async function openExtraConsolidated(\n  source: StoreReference\n): Promise<Result<ConsolidatedStore>> {\n  try {\n    const zarritaStore = await resolveListableStore(source);\n    const tree = await parseStoreContents(zarritaStore);\n    return Ok({ zarritaStore, tree });\n  } catch (error) {\n    const errorMessage = error instanceof Error ? error.message : String(error);\n    return Err(new Error(`Failed to open zarr store '${describeSource(source)}': ${errorMessage}`));\n  }\n}\n\n/**\n * Deep clone a ZarrTree, converting Symbol-keyed attrs to string keys for serialization/debugging\n */\nexport function serializeZarrTree(obj: ZarrTree | unknown): unknown {\n  if (obj === null || typeof obj !== 'object') return obj;\n\n  const result: Record<string, unknown> = {};\n\n  if (ATTRS_KEY in obj && obj[ATTRS_KEY]) {\n    result._attrs = obj[ATTRS_KEY];\n  }\n  if (ZARRAY_KEY in obj && obj[ZARRAY_KEY]) {\n    result._zarray = obj[ZARRAY_KEY];\n  }\n\n  for (const key in obj) {\n    if (Object.prototype.hasOwnProperty.call(obj, key)) {\n      // @ts-expect-error - Indexing unknown object for serialization.\n      const val = obj[key];\n      if (typeof val === 'function') {\n        result[key] = '<function>';\n      } else {\n        result[key] = serializeZarrTree(val);\n      }\n    }\n  }\n\n  return result;\n}\n\nexport type {\n  StoreReference,\n  ZarrTree,\n  ConsolidatedStore,\n  LazyZarrArray,\n  ZAttrsAny,\n} from './types';\nexport { ATTRS_KEY, ZARRAY_KEY } from './types';\nexport { createPrefixedStore } from './prefixedStore';\nexport {\n  createOpenJpegDecoder,\n  createOpenJphDecoder,\n  createWasmLocateFile,\n  registerJpeg2kCodec,\n  registerExperimentalHtj2kCodec,\n  type ImageCodecDecoder,\n  type OpenJpegFactory,\n  type OpenJphFactory,\n  type RegisterImageCodecOptions,\n} from './codecs';\nexport {\n  createOpenJphEncoder,\n  encodeHtj2kPlane,\n  loadOpenJphEncoder,\n  planeArrayForDtype,\n  type Htj2kEncodeOptions,\n  type Htj2kPlaneDtype,\n  type OpenJphEncoder,\n} from './htj2k-encode';\nexport {\n  loadOmeZarrMultiscalesFromStore,\n  type VivCompatiblePixelSource,\n  type RasterSelection,\n} from './omeZarr';\n\nexport type { Result } from './result';\nexport { Ok, Err, isOk, isErr, unwrap, unwrapOr } from 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package/dist/workers/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/workers/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EAAa,KAAK,UAAU,EAAE,KAAK,gBAAgB,EAAE,MAAM,wBAAwB,CAAC;AAG3F,YAAY,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AAEzD,MAAM,MAAM,8BAA8B,GAAG;IAC3C,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,SAAS,CAAC,EAAE,MAAM,GAAG,GAAG,CAAC;IACzB,oBAAoB,CAAC,EAAE,OAAO,CAAC;IAC/B,KAAK,CAAC,EAAE,UAAU,CAAC;CACpB,CAAC;AAiBF,uFAAuF;AACvF,wBAAgB,uBAAuB,CAAC,OAAO,GAAE,8BAAmC,cAoBnF;AAED,2EAA2E;AAC3E,wBAAgB,wBAAwB,SAMvC;AAED,YAAY,EAAE,gBAAgB,EAAE,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/workers/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EAAa,KAAK,UAAU,EAAE,KAAK,gBAAgB,EAAE,MAAM,wBAAwB,CAAC;AAG3F,YAAY,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AAEzD,MAAM,MAAM,8BAA8B,GAAG;IAC3C,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,SAAS,CAAC,EAAE,MAAM,GAAG,GAAG,CAAC;IACzB,oBAAoB,CAAC,EAAE,OAAO,CAAC;IAC/B,KAAK,CAAC,EAAE,UAAU,CAAC;CACpB,CAAC;AAkBF,uFAAuF;AACvF,wBAAgB,uBAAuB,CAAC,OAAO,GAAE,8BAAmC,cAoBnF;AAED,2EAA2E;AAC3E,wBAAgB,wBAAwB,SAMvC;AAED,YAAY,EAAE,gBAAgB,EAAE,CAAC"}

package/dist/workers.js

@@ -1,4 +1,4 @@
-import { n as e, r as t } from "./chunkDecode-Dtm8HfWS.js";
+import { n as e, r as t } from "./chunkDecode-CvE5qLLQ.js";
 import { WorkerPool as n } from "@fideus-labs/worker-pool";
 import { getWorker as r } from "@fideus-labs/fizarrita";
 //#region src/workers/index.ts
@@ -7,7 +7,7 @@ function a() {
 	return typeof navigator < "u" && navigator.hardwareConcurrency ? Math.min(navigator.hardwareConcurrency, 4) : 4;
 }
 function o() {
-	return new URL("data:video/mp2t;base64,Ly8gUmVnaXN0cmF0aW9uIG11c3QgcnVuIGJlZm9yZSBmaXphcnJpdGEncyBjb2RlYy13b3JrZXIgaW5zdGFsbHMgbWVzc2FnZSBoYW5kbGVycy4KLy8gVXNlIG9yZGVyZWQgc3RhdGljIGltcG9ydHMgKG5vdCB0b3AtbGV2ZWwgYXdhaXQpIHNvIHRoZSB3b3JrZXIgaXMgc3luY2hyb25vdXNseQovLyByZWFkeSB3aGVuIHRoZSBicm93c2VyIG1hcmtzIHRoZSBzY3JpcHQgYXMgbG9hZGVkLgppbXBvcnQgJy4vY29kZWMtd29ya2VyLWluaXQnOwppbXBvcnQgJ0BmaWRldXMtbGFicy9maXphcnJpdGEvY29kZWMtd29ya2VyJzsK", "" + import.meta.url);
+	return new URL("./codec-worker.js", import.meta.url);
 }
 t(r);
 function s(t = {}) {

package/dist/workers.js.map

@@ -1 +1 @@
-{"version":3,"file":"workers.js","names":[],"sources":["../src/workers/index.ts"],"sourcesContent":["import { WorkerPool } from '@fideus-labs/worker-pool';\nimport { getWorker, type ChunkCache, type GetWorkerOptions } from '@fideus-labs/fizarrita';\nimport { setChunkDecodeBackend, setFizarritaGetWorker } from '../chunkDecode';\n\nexport type { ChunkCache } from '@fideus-labs/fizarrita';\n\nexport type EnableWorkerChunkDecodeOptions = {\n  workers?: number;\n  workerUrl?: string | URL;\n  useSharedArrayBuffer?: boolean;\n  cache?: ChunkCache;\n};\n\nlet activePool: WorkerPool | undefined;\n\nfunction defaultWorkerCount() {\n  if (typeof navigator !== 'undefined' && navigator.hardwareConcurrency) {\n    return Math.min(navigator.hardwareConcurrency, 4);\n  }\n  return 4;\n}\n\nfunction defaultWorkerUrl() {\n  return new URL('./codec-worker.js', import.meta.url);\n}\n\nsetFizarritaGetWorker(getWorker);\n\n/** Enable fizarrita worker-pool chunk decode for all subsequent getZarrChunk reads. */\nexport function enableWorkerChunkDecode(options: EnableWorkerChunkDecodeOptions = {}) {\n  if (activePool) {\n    disableWorkerChunkDecode();\n  }\n\n  const pool = new WorkerPool(options.workers ?? defaultWorkerCount());\n  activePool = pool;\n\n  const workerUrl = options.workerUrl ?? defaultWorkerUrl();\n  setChunkDecodeBackend({\n    kind: 'fizarrita',\n    pool,\n    options: {\n      workerUrl,\n      useSharedArrayBuffer: options.useSharedArrayBuffer,\n      cache: options.cache,\n    },\n  });\n\n  return pool;\n}\n\n/** Terminate worker pool and restore main-thread zarr.get chunk decode. */\nexport function disableWorkerChunkDecode() {\n  if (activePool) {\n    activePool.terminateWorkers();\n    activePool = undefined;\n  }\n  setChunkDecodeBackend({ kind: 'main' });\n}\n\nexport type { GetWorkerOptions };\n"],"mappings":";;;;AAaA,IAAI;AAEJ,SAAS,IAAqB;AAI5B,QAHI,OAAO,YAAc,OAAe,UAAU,sBACzC,KAAK,IAAI,UAAU,qBAAqB,EAAE,GAE5C;;AAGT,SAAS,IAAmB;AAC1B,QAAO,IAAA,IAAA,uaAAA,KAAA,OAAA,KAAA,IAA6C;;AAGtD,EAAsB,EAAU;AAGhC,SAAgB,EAAwB,IAA0C,EAAE,EAAE;AACpF,CAAI,KACF,GAA0B;CAG5B,IAAM,IAAO,IAAI,EAAW,EAAQ,WAAW,GAAoB,CAAC;AAcpE,QAbA,IAAa,GAGb,EAAsB;EACpB,MAAM;EACN;EACA,SAAS;GACP,WALc,EAAQ,aAAa,GAAkB;GAMrD,sBAAsB,EAAQ;GAC9B,OAAO,EAAQ;;EAElB,CAAC,EAEK;;AAIT,SAAgB,IAA2B;AAKzC,CAJA,AAEE,OADA,EAAW,kBAAkB,EAChB,KAAA,IAEf,EAAsB,EAAE,MAAM,QAAQ,CAAC"}
+{"version":3,"file":"workers.js","names":[],"sources":["../src/workers/index.ts"],"sourcesContent":["import { WorkerPool } from '@fideus-labs/worker-pool';\nimport { getWorker, type ChunkCache, type GetWorkerOptions } from '@fideus-labs/fizarrita';\nimport { setChunkDecodeBackend, setFizarritaGetWorker } from '../chunkDecode';\n\nexport type { ChunkCache } from '@fideus-labs/fizarrita';\n\nexport type EnableWorkerChunkDecodeOptions = {\n  workers?: number;\n  workerUrl?: string | URL;\n  useSharedArrayBuffer?: boolean;\n  cache?: ChunkCache;\n};\n\nlet activePool: WorkerPool | undefined;\n\nfunction defaultWorkerCount() {\n  if (typeof navigator !== 'undefined' && navigator.hardwareConcurrency) {\n    return Math.min(navigator.hardwareConcurrency, 4);\n  }\n  return 4;\n}\n\nfunction defaultWorkerUrl() {\n  const workerFile = './codec-worker.js';\n  return new URL(workerFile, import.meta.url);\n}\n\nsetFizarritaGetWorker(getWorker);\n\n/** Enable fizarrita worker-pool chunk decode for all subsequent getZarrChunk reads. */\nexport function enableWorkerChunkDecode(options: EnableWorkerChunkDecodeOptions = {}) {\n  if (activePool) {\n    disableWorkerChunkDecode();\n  }\n\n  const pool = new WorkerPool(options.workers ?? defaultWorkerCount());\n  activePool = pool;\n\n  const workerUrl = options.workerUrl ?? defaultWorkerUrl();\n  setChunkDecodeBackend({\n    kind: 'fizarrita',\n    pool,\n    options: {\n      workerUrl,\n      useSharedArrayBuffer: options.useSharedArrayBuffer,\n      cache: options.cache,\n    },\n  });\n\n  return pool;\n}\n\n/** Terminate worker pool and restore main-thread zarr.get chunk decode. */\nexport function disableWorkerChunkDecode() {\n  if (activePool) {\n    activePool.terminateWorkers();\n    activePool = undefined;\n  }\n  setChunkDecodeBackend({ kind: 'main' });\n}\n\nexport type { GetWorkerOptions };\n"],"mappings":";;;;AAaA,IAAI;AAEJ,SAAS,IAAqB;AAI5B,QAHI,OAAO,YAAc,OAAe,UAAU,sBACzC,KAAK,IAAI,UAAU,qBAAqB,EAAE,GAE5C;;AAGT,SAAS,IAAmB;AAE1B,QAAO,IAAI,IADQ,qBACQ,OAAO,KAAK,IAAI;;AAG7C,EAAsB,EAAU;AAGhC,SAAgB,EAAwB,IAA0C,EAAE,EAAE;AACpF,CAAI,KACF,GAA0B;CAG5B,IAAM,IAAO,IAAI,EAAW,EAAQ,WAAW,GAAoB,CAAC;AAcpE,QAbA,IAAa,GAGb,EAAsB;EACpB,MAAM;EACN;EACA,SAAS;GACP,WALc,EAAQ,aAAa,GAAkB;GAMrD,sBAAsB,EAAQ;GAC9B,OAAO,EAAQ;GAChB;EACF,CAAC,EAEK;;AAIT,SAAgB,IAA2B;AAKzC,CAJA,AAEE,OADA,EAAW,kBAAkB,EAChB,KAAA,IAEf,EAAsB,EAAE,MAAM,QAAQ,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "zarrextra",
-  "version": "0.2.0",
+  "version": "0.2.2",
   "description": "Extra utilities for working with zarr stores using zarrita",
   "type": "module",
   "module": "./dist/index.js",
@@ -11,8 +11,11 @@
       "import": "./dist/index.js"
     },
     "./workers": {
-      "types": "./dist/workers.d.ts",
+      "types": "./dist/workers/index.d.ts",
       "import": "./dist/workers.js"
+    },
+    "./codec-worker": {
+      "import": "./dist/codec-worker.js"
     }
   },
   "files": [
@@ -47,7 +50,7 @@
     "@fideus-labs/worker-pool": "^1.0.0"
   },
   "scripts": {
-    "build": "vite build",
+    "build": "vite build && vite build --mode codec-worker",
     "dev": "vite build --watch",
     "test": "vitest run",
     "test:watch": "vitest",

package/dist/codecs-DNu3yP16.js

@@ -1,158 +0,0 @@
-import * as e from "zarrita";
-//#region src/codecs.ts
-function t(e) {
-	let t = e.dataType ?? e.data_type, n = e.shape ?? e.chunk_shape;
-	if (!t) throw Error("Chunk metadata is missing dataType / data_type.");
-	if (!n) throw Error("Chunk metadata is missing shape / chunk_shape.");
-	return {
-		dataType: t,
-		shape: n,
-		codecs: e.codecs ?? [],
-		fillValue: e.fillValue ?? e.fill_value ?? null
-	};
-}
-function n(e) {
-	return (t, n) => t.endsWith(".wasm") ? e : t;
-}
-var r = [
-	"imagecodecs_jpeg2k",
-	"numcodecs.imagecodecs_jpeg2k",
-	"jpeg2k"
-], i = "experimental.openjph_htj2k", a = [i, ...[
-	"experimental.imagecodecs_htj2k",
-	"imagecodecs_htj2k",
-	"numcodecs.imagecodecs_htj2k"
-]], o = Function("specifier", "return import(specifier)");
-function s(e) {
-	throw Error(`${e} encode is not implemented in zarrextra; decode-only for now.`);
-}
-function c(e) {
-	return e instanceof Uint8Array ? e : ArrayBuffer.isView(e) ? new Uint8Array(e.buffer, e.byteOffset, e.byteLength) : new Uint8Array(e);
-}
-function l(e) {
-	let t = new ArrayBuffer(e.byteLength);
-	return new Uint8Array(t).set(e), t;
-}
-function u(e) {
-	return e.reduce((e, t) => e * t, 1);
-}
-function d(e) {
-	let t = Array(e.length), n = 1;
-	for (let r = e.length - 1; r >= 0; --r) t[r] = n, n *= e[r] ?? 1;
-	return t;
-}
-function f(e, t) {
-	if (Array.isArray(e)) throw Error("Image codec decoder returned a plain array; expected binary data.");
-	let n = l(c(e)), r = u(t.shape), i;
-	switch (t.dataType) {
-		case "uint8":
-			i = new Uint8Array(n);
-			break;
-		case "int8":
-			i = new Int8Array(n);
-			break;
-		case "uint16":
-			i = new Uint16Array(n);
-			break;
-		case "int16":
-			i = new Int16Array(n);
-			break;
-		case "uint32":
-			i = new Uint32Array(n);
-			break;
-		case "int32":
-			i = new Int32Array(n);
-			break;
-		case "float32":
-			i = new Float32Array(n);
-			break;
-		case "float64":
-			i = new Float64Array(n);
-			break;
-		default: throw Error(`Image codec does not support Zarrita dtype '${t.dataType}'.`);
-	}
-	if (i.length !== r) throw Error(`Image codec decoded ${i.length} values, expected ${r} for chunk shape [${t.shape.join(", ")}].`);
-	return i;
-}
-function p(e, n) {
-	return async () => ({
-		kind: "array_to_bytes",
-		fromConfig(r, i) {
-			let a = t(i);
-			return {
-				kind: "array_to_bytes",
-				encode: () => s(e),
-				async decode(e) {
-					return {
-						data: f(await n(e, a, r), a),
-						shape: a.shape,
-						stride: d(a.shape)
-					};
-				}
-			};
-		}
-	});
-}
-function m() {
-	let { registry: n } = e;
-	for (let [e, r] of [...n.entries()]) n.set(e, async () => {
-		let e = await r();
-		if (typeof e.fromConfig != "function") return e;
-		let n = e.fromConfig.bind(e);
-		return {
-			...e,
-			fromConfig(e, r) {
-				return n(e, t(r));
-			}
-		};
-	});
-}
-function h(e, t = {}) {
-	let n;
-	async function r() {
-		return n ??= Promise.resolve(e({ locateFile: t.locateFile })), await n;
-	}
-	return async (e) => {
-		let t = (await r()).J2KDecoder;
-		if (!t) throw Error("OpenJPEG runtime does not expose J2KDecoder.");
-		let n = new t();
-		return n.getEncodedBuffer(e.length).set(e), n.decode(), n.getDecodedBuffer();
-	};
-}
-async function g(e) {
-	let t = await o("@cornerstonejs/codec-openjpeg/decode").catch(() => o("@cornerstonejs/codec-openjpeg")), n = t.default ?? t.OpenJPEGJS ?? t.OpenJPEGWASM ?? t;
-	if (typeof n != "function") throw Error("Could not find an OpenJPEG factory export in @cornerstonejs/codec-openjpeg.");
-	return h(n, e);
-}
-function _(e, t = {}) {
-	let n;
-	async function r() {
-		return n ??= Promise.resolve(e({ locateFile: t.locateFile })), await n;
-	}
-	return async (e) => {
-		let t = await r(), n = t.HTJ2KDecoder ?? t.JPHDecoder ?? t.J2KDecoder;
-		if (!n) throw Error("OpenJPH runtime does not expose a known decoder class; pass a custom decoder option.");
-		let i = new n();
-		return i.getEncodedBuffer(e.length).set(e), i.decode(), i.getDecodedBuffer();
-	};
-}
-async function v(e) {
-	let t = await o("@cornerstonejs/codec-openjph/wasmjs").catch(() => o("@cornerstonejs/codec-openjph")), r = t.default ?? t.OpenJPHJS ?? t;
-	if (typeof r != "function") throw Error("Could not find an OpenJPH factory export in @cornerstonejs/codec-openjph.");
-	let i = await o("@cornerstonejs/codec-openjph/wasm").catch(() => null), a = i ? i.default ?? i : void 0;
-	return _(r, { locateFile: e.locateFile ?? (a ? n(a) : void 0) });
-}
-function y(t, n, r, i = {}) {
-	let a = i.ids ?? n, o, s = async () => (o ??= Promise.resolve(i.decoder ?? r(i)), await o);
-	for (let n of a) e.registry.set(n, p(t, async (e, t, n) => await (await s())(e, t, n)));
-}
-function b(e = {}) {
-	y("imagecodecs_jpeg2k", r, g, e);
-}
-function x(e = {}) {
-	y(i, a, v, e);
-}
-//#endregion
-export { b as a, x as i, _ as n, m as o, n as r, h as t };
-
-//# sourceMappingURL=codecs-DNu3yP16.js.map

package/dist/codecs-DNu3yP16.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"codecs-DNu3yP16.js","names":[],"sources":["../src/codecs.ts"],"sourcesContent":["import * as zarr from 'zarrita';\n\ntype ChunkMetadata<D extends zarr.DataType = zarr.DataType> = {\n  dataType: D;\n  shape: number[];\n  codecs: zarr.CodecMetadata[];\n  fillValue: zarr.Scalar<D> | null;\n};\n\n/** Chunk metadata from zarrita (camelCase) or fizarrita workers (snake_case). */\ntype ChunkMetadataInput = Partial<ChunkMetadata> & {\n  data_type?: zarr.DataType;\n  chunk_shape?: number[];\n  fill_value?: zarr.Scalar<zarr.DataType> | null;\n};\n\nfunction normalizeChunkMetadata(meta: ChunkMetadataInput): ChunkMetadata {\n  const dataType = meta.dataType ?? meta.data_type;\n  const shape = meta.shape ?? meta.chunk_shape;\n  if (!dataType) {\n    throw new Error('Chunk metadata is missing dataType / data_type.');\n  }\n  if (!shape) {\n    throw new Error('Chunk metadata is missing shape / chunk_shape.');\n  }\n  return {\n    dataType,\n    shape,\n    codecs: meta.codecs ?? [],\n    fillValue: meta.fillValue ?? meta.fill_value ?? null,\n  };\n}\n\ntype Codec = {\n  kind?: 'array_to_array' | 'array_to_bytes' | 'bytes_to_bytes';\n  encode(data: unknown): Promise<Uint8Array> | Uint8Array;\n  decode(data: Uint8Array): Promise<zarr.Chunk<zarr.DataType>> | zarr.Chunk<zarr.DataType>;\n};\n\ntype CodecEntry = {\n  kind?: Codec['kind'];\n  fromConfig: (config: unknown, meta: ChunkMetadata) => Codec;\n};\n\nexport type DecodedImageBytes = ArrayBuffer | ArrayBufferView;\n\nexport type ImageCodecDecoder = (\n  encoded: Uint8Array,\n  meta: ChunkMetadata,\n  config: unknown\n) => Promise<DecodedImageBytes> | DecodedImageBytes;\n\nexport interface RegisterImageCodecOptions {\n  /**\n   * Override the codec ids registered into Zarrita's global registry.\n   * Defaults include the standard registry id and a pragmatic alias.\n   */\n  ids?: string[];\n  /** Custom decoder used by tests or applications with their own WASM loading. */\n  decoder?: ImageCodecDecoder;\n  /** Optional Emscripten locateFile hook for bundled WASM decoders. */\n  locateFile?: (path: string, prefix: string) => string;\n}\n\nexport type OpenJpegFactory = (opts?: {\n  locateFile?: RegisterImageCodecOptions['locateFile'];\n}) => Promise<Record<string, unknown>> | Record<string, unknown>;\n\nexport type OpenJphFactory = (opts?: {\n  locateFile?: RegisterImageCodecOptions['locateFile'];\n}) => Promise<Record<string, unknown>> | Record<string, unknown>;\n\n/** Emscripten locateFile hook that resolves bundled codec WASM to a bundler URL. */\nexport function createWasmLocateFile(\n  wasmUrl: string\n): NonNullable<RegisterImageCodecOptions['locateFile']> {\n  return (path, _prefix) => (path.endsWith('.wasm') ? wasmUrl : path);\n}\n\nconst JPEG2K_CODEC_IDS = ['imagecodecs_jpeg2k', 'numcodecs.imagecodecs_jpeg2k', 'jpeg2k'];\nconst HTJ2K_OPENJPH_CODEC_ID = 'experimental.openjph_htj2k';\nconst HTJ2K_LEGACY_CODEC_IDS = [\n  'experimental.imagecodecs_htj2k',\n  'imagecodecs_htj2k',\n  'numcodecs.imagecodecs_htj2k',\n];\nconst HTJ2K_CODEC_IDS = [HTJ2K_OPENJPH_CODEC_ID, ...HTJ2K_LEGACY_CODEC_IDS];\n\nconst dynamicImport = new Function('specifier', 'return import(specifier)') as (\n  specifier: string\n) => Promise<Record<string, unknown>>;\n\nfunction unsupportedEncode(codecName: string): never {\n  throw new Error(`${codecName} encode is not implemented in zarrextra; decode-only for now.`);\n}\n\nfunction toUint8Array(data: DecodedImageBytes): Uint8Array {\n  if (data instanceof Uint8Array) {\n    return data;\n  }\n  if (ArrayBuffer.isView(data)) {\n    return new Uint8Array(data.buffer, data.byteOffset, data.byteLength);\n  }\n  return new Uint8Array(data);\n}\n\nfunction copyArrayBufferView(bytes: Uint8Array): ArrayBuffer {\n  const copy = new ArrayBuffer(bytes.byteLength);\n  new Uint8Array(copy).set(bytes);\n  return copy;\n}\n\nfunction product(values: number[]): number {\n  return values.reduce((acc, value) => acc * value, 1);\n}\n\nfunction getStrides(shape: number[]): number[] {\n  const stride = new Array<number>(shape.length);\n  let step = 1;\n  for (let index = shape.length - 1; index >= 0; index -= 1) {\n    stride[index] = step;\n    step *= shape[index] ?? 1;\n  }\n  return stride;\n}\n\nfunction typedArrayFromDecodedBytes(\n  decoded: DecodedImageBytes,\n  meta: ChunkMetadata\n): zarr.TypedArray<zarr.DataType> {\n  if (Array.isArray(decoded)) {\n    throw new Error('Image codec decoder returned a plain array; expected binary data.');\n  }\n\n  const decodedBytes = toUint8Array(decoded);\n  const buffer = copyArrayBufferView(decodedBytes);\n  const expectedValues = product(meta.shape);\n\n  let data: zarr.TypedArray<zarr.DataType>;\n  switch (meta.dataType) {\n    case 'uint8':\n      data = new Uint8Array(buffer);\n      break;\n    case 'int8':\n      data = new Int8Array(buffer);\n      break;\n    case 'uint16':\n      data = new Uint16Array(buffer);\n      break;\n    case 'int16':\n      data = new Int16Array(buffer);\n      break;\n    case 'uint32':\n      data = new Uint32Array(buffer);\n      break;\n    case 'int32':\n      data = new Int32Array(buffer);\n      break;\n    case 'float32':\n      data = new Float32Array(buffer);\n      break;\n    case 'float64':\n      data = new Float64Array(buffer);\n      break;\n    default:\n      throw new Error(`Image codec does not support Zarrita dtype '${meta.dataType}'.`);\n  }\n\n  if (data.length !== expectedValues) {\n    throw new Error(\n      `Image codec decoded ${data.length} values, expected ${expectedValues} for chunk shape ` +\n        `[${meta.shape.join(', ')}].`\n    );\n  }\n\n  return data;\n}\n\nfunction createImageCodecEntry(\n  codecName: string,\n  decoder: ImageCodecDecoder\n): () => Promise<CodecEntry> {\n  return async () => ({\n    kind: 'array_to_bytes',\n    fromConfig(config: unknown, meta: ChunkMetadataInput): Codec {\n      const chunkMeta = normalizeChunkMetadata(meta);\n      return {\n        kind: 'array_to_bytes',\n        encode: () => unsupportedEncode(codecName),\n        async decode(encoded: Uint8Array) {\n          const decoded = await decoder(encoded, chunkMeta, config);\n          return {\n            data: typedArrayFromDecodedBytes(decoded, chunkMeta),\n            shape: chunkMeta.shape,\n            stride: getStrides(chunkMeta.shape),\n          };\n        },\n      };\n    },\n  });\n}\n\n/**\n * Adapt zarrita's built-in registry codecs for fizarrita's worker metadata\n * (`data_type`, `chunk_shape`) before fizarrita's codec worker loads.\n */\nexport function wrapZarrRegistryForFizarritaWorker() {\n  const { registry } = zarr;\n  for (const [id, factory] of [...registry.entries()]) {\n    registry.set(id, async () => {\n      const entry = await factory();\n      if (typeof entry.fromConfig !== 'function') {\n        return entry;\n      }\n      const fromConfig = entry.fromConfig.bind(entry);\n      return {\n        ...entry,\n        fromConfig(config: unknown, meta: ChunkMetadataInput) {\n          return fromConfig(config, normalizeChunkMetadata(meta));\n        },\n      };\n    });\n  }\n}\n\nexport function createOpenJpegDecoder(\n  factory: OpenJpegFactory,\n  options: Pick<RegisterImageCodecOptions, 'locateFile'> = {}\n): ImageCodecDecoder {\n  let runtimePromise: Promise<Record<string, unknown>> | undefined;\n  async function getRuntime() {\n    runtimePromise ??= Promise.resolve(\n      factory({\n        locateFile: options.locateFile,\n      })\n    );\n    return await runtimePromise;\n  }\n  return async (encoded) => {\n    const runtime = await getRuntime();\n    const Decoder = runtime.J2KDecoder as\n      | (new () => {\n          getEncodedBuffer(length: number): Uint8Array;\n          decode(): void;\n          getDecodedBuffer(): DecodedImageBytes;\n        })\n      | undefined;\n    if (!Decoder) {\n      throw new Error('OpenJPEG runtime does not expose J2KDecoder.');\n    }\n    const decoder = new Decoder();\n    decoder.getEncodedBuffer(encoded.length).set(encoded);\n    decoder.decode();\n    return decoder.getDecodedBuffer();\n  };\n}\n\nasync function loadOpenJpegDecoder(options: RegisterImageCodecOptions): Promise<ImageCodecDecoder> {\n  const mod = await dynamicImport('@cornerstonejs/codec-openjpeg/decode').catch(() =>\n    dynamicImport('@cornerstonejs/codec-openjpeg')\n  );\n  const factory = (mod.default ?? mod.OpenJPEGJS ?? mod.OpenJPEGWASM ?? mod) as unknown;\n  if (typeof factory !== 'function') {\n    throw new Error('Could not find an OpenJPEG factory export in @cornerstonejs/codec-openjpeg.');\n  }\n  return createOpenJpegDecoder(factory as OpenJpegFactory, options);\n}\n\ntype Htj2kDecoderClass = new () => {\n  getEncodedBuffer(length: number): Uint8Array;\n  decode(): void;\n  getDecodedBuffer(): DecodedImageBytes;\n};\n\nexport function createOpenJphDecoder(\n  factory: OpenJphFactory,\n  options: Pick<RegisterImageCodecOptions, 'locateFile'> = {}\n): ImageCodecDecoder {\n  let runtimePromise: Promise<Record<string, unknown>> | undefined;\n  async function getRuntime() {\n    runtimePromise ??= Promise.resolve(\n      factory({\n        locateFile: options.locateFile,\n      })\n    );\n    return await runtimePromise;\n  }\n  return async (encoded) => {\n    const runtime = await getRuntime();\n    const Decoder = (runtime.HTJ2KDecoder ?? runtime.JPHDecoder ?? runtime.J2KDecoder) as\n      | Htj2kDecoderClass\n      | undefined;\n    if (!Decoder) {\n      throw new Error(\n        'OpenJPH runtime does not expose a known decoder class; pass a custom decoder option.'\n      );\n    }\n    const decoder = new Decoder();\n    decoder.getEncodedBuffer(encoded.length).set(encoded);\n    decoder.decode();\n    return decoder.getDecodedBuffer();\n  };\n}\n\nasync function loadOpenJphDecoder(options: RegisterImageCodecOptions): Promise<ImageCodecDecoder> {\n  const factoryMod = await dynamicImport('@cornerstonejs/codec-openjph/wasmjs').catch(() =>\n    dynamicImport('@cornerstonejs/codec-openjph')\n  );\n  const factory = (factoryMod.default ?? factoryMod.OpenJPHJS ?? factoryMod) as unknown;\n  if (typeof factory !== 'function') {\n    throw new Error('Could not find an OpenJPH factory export in @cornerstonejs/codec-openjph.');\n  }\n  const wasmMod = await dynamicImport('@cornerstonejs/codec-openjph/wasm').catch(() => null);\n  const wasmAsset = wasmMod ? ((wasmMod.default ?? wasmMod) as string | undefined) : undefined;\n  const locateFile =\n    options.locateFile ?? 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package/dist/workers/codec-worker-init.d.ts

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=codec-worker-init.d.ts.map

package/dist/workers/codec-worker-init.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"codec-worker-init.d.ts","sourceRoot":"","sources":["../../src/workers/codec-worker-init.ts"],"names":[],"mappings":""}