zarr-metadata 0.7.0 → 0.8.0

package/dist/semantics.d.ts

@@ -1,49 +1,21 @@
 /**
- * Semantic (cross-field) validation for v3 array metadata.
+ * Semantic (cross-field) validation for v3 array metadata: the
+ * orchestrator. The rules themselves live with their content —
+ * `chunk-grids.ts`, `codecs.ts`, and `data-types.ts` each hold the syntax
+ * (types) and semantics (procedures) for the names this package
+ * interprets, mirroring how the spec, the Python reference's type layout,
+ * and the zarr-extensions registry are organized. This module only walks
+ * documents: extract shape, ask each content module for its verdicts,
+ * thread the chunk-size context into codec pipelines, and descend into a
+ * group's inline consolidated entries.
  *
- * The structural validators never interpret what an extension point names;
- * this module deliberately interprets a small set of WELL-KNOWN core
- * extension points to enforce the cross-field rules the specs state in
- * prose:
- *
- * - the `regular` chunk grid REQUIRES a configuration with `chunk_shape`,
- *   which has one length per dimension of `shape`;
- * - the `rectilinear` chunk grid requires a configuration with `kind` and
- *   `chunk_shapes`; `chunk_shapes` has one entry per dimension, and each
- *   explicit chunk list (integers and `[size, count]` run-length pairs)
- *   sums exactly to that dimension's length (the bare-integer uniform
- *   shorthand carries no sum constraint, like the regular grid);
- * - a `transpose` codec requires a configuration with `order`, a
- *   permutation of `0..n-1` with one entry per array dimension;
- * - a `sharding_indexed` codec requires a configuration with
- *   `chunk_shape`, `codecs`, and `index_codecs`; its inner `chunk_shape`
- *   matches the array's
- *   dimensionality and evenly divides every chunk it shards — the grid's
- *   chunk at the top level (each distinct per-dimension size, for
- *   rectilinear grids), the parent shard's inner chunk when sharding
- *   nests;
- * - `fill_value` has a JSON shape permitted for the named core data type
- *   (booleans for `bool`, ranged integers for the int types, numbers /
- *   the "NaN"-family sentinels / width-checked "0x…" strings for the
- *   float types, two-element arrays for the complex types).
- *
- * Dimensional context is THREADED through codec pipelines rather than
- * assumed constant (mirroring zarr-python's chunk-spec threading): a valid
- * `transpose` permutes the per-dimension chunk sizes for the codecs after
- * it, and any codec this layer cannot reason about — `reshape` may change
- * a chunk's rank, and unknown codecs may do anything — invalidates the
- * dimensional context for the rest of the pipeline instead of letting
- * stale array-level facts produce false verdicts.
- *
- * Required-configuration rules cover ONLY the names this layer interprets
- * (the two grids, transpose, sharding). Other extensions' required fields
- * are registry-schema facts — the editor's registry layer enforces them
- * from the vendored schemas, and duplicating that knowledge here as
- * hardcoded rules would drift. Unrecognized names are skipped everywhere —
- * the extension name space is open, and a rule that guessed would lie. This layer has no counterpart
+ * Unrecognized names are skipped everywhere — the extension name space is
+ * open, and a rule that guessed would lie. This layer has no counterpart
  * in the Python reference implementation (which stops at structure), so it
  * is covered by this package's own tests rather than the conformance
- * corpus.
+ * corpus. The structural document layer (validation.ts) stays
+ * content-agnostic and corpus-governed; it never reads the content
+ * modules.
  */
 import { type ErrorTree } from "./errors.js";
 /**

package/dist/semantics.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"semantics.d.ts","sourceRoot":"","sources":["../src/semantics.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAKH,OAAO,EAAU,KAAK,SAAS,EAAoB,MAAM,aAAa,CAAC;AA4BvE;;;;;;GAMG;AACH,wBAAgB,wBAAwB,CAAC,KAAK,EAAE,OAAO,GAAG,SAAS,CAElE;AA0BD;;;;;;;GAOG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,OAAO,GAAG,SAAS,CAE7D"}

package/dist/semantics.js

@@ -1,422 +1,34 @@
 /**
- * Semantic (cross-field) validation for v3 array metadata.
+ * Semantic (cross-field) validation for v3 array metadata: the
+ * orchestrator. The rules themselves live with their content —
+ * `chunk-grids.ts`, `codecs.ts`, and `data-types.ts` each hold the syntax
+ * (types) and semantics (procedures) for the names this package
+ * interprets, mirroring how the spec, the Python reference's type layout,
+ * and the zarr-extensions registry are organized. This module only walks
+ * documents: extract shape, ask each content module for its verdicts,
+ * thread the chunk-size context into codec pipelines, and descend into a
+ * group's inline consolidated entries.
  *
- * The structural validators never interpret what an extension point names;
- * this module deliberately interprets a small set of WELL-KNOWN core
- * extension points to enforce the cross-field rules the specs state in
- * prose:
- *
- * - the `regular` chunk grid REQUIRES a configuration with `chunk_shape`,
- *   which has one length per dimension of `shape`;
- * - the `rectilinear` chunk grid requires a configuration with `kind` and
- *   `chunk_shapes`; `chunk_shapes` has one entry per dimension, and each
- *   explicit chunk list (integers and `[size, count]` run-length pairs)
- *   sums exactly to that dimension's length (the bare-integer uniform
- *   shorthand carries no sum constraint, like the regular grid);
- * - a `transpose` codec requires a configuration with `order`, a
- *   permutation of `0..n-1` with one entry per array dimension;
- * - a `sharding_indexed` codec requires a configuration with
- *   `chunk_shape`, `codecs`, and `index_codecs`; its inner `chunk_shape`
- *   matches the array's
- *   dimensionality and evenly divides every chunk it shards — the grid's
- *   chunk at the top level (each distinct per-dimension size, for
- *   rectilinear grids), the parent shard's inner chunk when sharding
- *   nests;
- * - `fill_value` has a JSON shape permitted for the named core data type
- *   (booleans for `bool`, ranged integers for the int types, numbers /
- *   the "NaN"-family sentinels / width-checked "0x…" strings for the
- *   float types, two-element arrays for the complex types).
- *
- * Dimensional context is THREADED through codec pipelines rather than
- * assumed constant (mirroring zarr-python's chunk-spec threading): a valid
- * `transpose` permutes the per-dimension chunk sizes for the codecs after
- * it, and any codec this layer cannot reason about — `reshape` may change
- * a chunk's rank, and unknown codecs may do anything — invalidates the
- * dimensional context for the rest of the pipeline instead of letting
- * stale array-level facts produce false verdicts.
- *
- * Required-configuration rules cover ONLY the names this layer interprets
- * (the two grids, transpose, sharding). Other extensions' required fields
- * are registry-schema facts — the editor's registry layer enforces them
- * from the vendored schemas, and duplicating that knowledge here as
- * hardcoded rules would drift. Unrecognized names are skipped everywhere —
- * the extension name space is open, and a rule that guessed would lie. This layer has no counterpart
+ * Unrecognized names are skipped everywhere — the extension name space is
+ * open, and a rule that guessed would lie. This layer has no counterpart
  * in the Python reference implementation (which stops at structure), so it
  * is covered by this package's own tests rather than the conformance
- * corpus.
+ * corpus. The structural document layer (validation.ts) stays
+ * content-agnostic and corpus-governed; it never reads the content
+ * modules.
  */
+import { chunkGridVerdict } from "./chunk-grids.js";
+import { pipelineIssues } from "./codecs.js";
+import { fillValueIssue } from "./data-types.js";
 import { treeOf } from "./errors.js";
-function isPlainObject(value) {
-    if (typeof value !== "object" || value === null || Array.isArray(value))
-        return false;
-    const proto = Object.getPrototypeOf(value);
-    return proto === null || proto === Object.prototype;
-}
-function isIntArray(value) {
-    return (Array.isArray(value) &&
-        Object.keys(value).length === value.length &&
-        value.every((item) => Number.isInteger(item)));
-}
-/** The `{name, configuration}` of a metadata field, when extractable. */
-function fieldParts(field) {
-    if (typeof field === "string")
-        return { name: field, configuration: undefined };
-    if (isPlainObject(field) && typeof field["name"] === "string") {
-        const configuration = field["configuration"];
-        return {
-            name: field["name"],
-            configuration: isPlainObject(configuration) ? configuration : undefined,
-        };
-    }
-    return undefined;
-}
-// --- fill_value vs data_type ----------------------------------------------
-const INT_RANGES = {
-    int8: [-128, 127],
-    int16: [-32768, 32767],
-    int32: [-2147483648, 2147483647],
-    int64: [-9223372036854775808, 9223372036854775807],
-    uint8: [0, 255],
-    uint16: [0, 65535],
-    uint32: [0, 4294967295],
-    uint64: [0, 18446744073709551615],
-};
-const FLOAT_HEX_DIGITS = {
-    float16: 4,
-    float32: 8,
-    float64: 16,
-};
-/** Hex digit width of each complex type's component floats. */
-const COMPLEX_COMPONENT_HEX_DIGITS = {
-    complex64: 8,
-    complex128: 16,
-};
-function isFloatFill(value, hexDigits) {
-    if (typeof value === "number")
-        return true;
-    if (typeof value !== "string")
-        return false;
-    if (value === "NaN" || value === "Infinity" || value === "-Infinity")
-        return true;
-    return new RegExp(`^0x[0-9a-fA-F]{${hexDigits}}$`).test(value);
-}
-function floatFillMessage(name, hexDigits) {
-    return (`expected a number, "NaN", "Infinity", "-Infinity", or a ` +
-        `${hexDigits}-hex-digit "0x..." string for data type ${JSON.stringify(name)}`);
-}
-/** The fill_value issue for a KNOWN core data type, if any; undefined otherwise. */
-function fillValueIssue(dataTypeName, fill) {
-    if (dataTypeName === "bool") {
-        return typeof fill === "boolean"
-            ? undefined
-            : 'expected a boolean fill value for data type "bool"';
-    }
-    const intRange = INT_RANGES[dataTypeName];
-    if (intRange !== undefined) {
-        const [low, high] = intRange;
-        return Number.isInteger(fill) && fill >= low && fill <= high
-            ? undefined
-            : `expected an integer in [${low}, ${high}] for data type ${JSON.stringify(dataTypeName)}`;
-    }
-    const floatDigits = FLOAT_HEX_DIGITS[dataTypeName];
-    if (floatDigits !== undefined) {
-        return isFloatFill(fill, floatDigits)
-            ? undefined
-            : floatFillMessage(dataTypeName, floatDigits);
-    }
-    const complexDigits = COMPLEX_COMPONENT_HEX_DIGITS[dataTypeName];
-    if (complexDigits !== undefined) {
-        const ok = Array.isArray(fill) &&
-            fill.length === 2 &&
-            fill.every((part) => isFloatFill(part, complexDigits));
-        return ok
-            ? undefined
-            : `expected a two-element [real, imaginary] array for data type ${JSON.stringify(dataTypeName)}`;
-    }
-    return undefined; // unrecognized data type: no verdict
-}
-// --- codec pipelines (transpose / sharding) --------------------------------
-function isPermutation(order) {
-    const seen = new Set(order);
-    return seen.size === order.length && order.every((entry) => entry >= 0 && entry < order.length);
-}
-/**
- * Walk one codec pipeline. `dims` is the array dimensionality at this point
- * (undefined when unknowable); `outerChunkSizes` holds the distinct chunk
- * lengths per dimension this pipeline may encode — what a sharding codec's
- * inner chunks must divide. A regular grid contributes one size per
- * dimension; a rectilinear grid may contribute several.
- */
-function pipelineIssues(pipeline, path, initialDims, initialChunkSizes) {
-    const issues = [];
-    // The dimensional context THREADS through the pipeline: transpose permutes
-    // it, and anything this layer cannot reason about invalidates it for the
-    // remaining codecs.
-    let dims = initialDims;
-    let chunkSizes = initialChunkSizes;
-    const dropContext = () => {
-        dims = undefined;
-        chunkSizes = undefined;
-    };
-    pipeline.forEach((entry, index) => {
-        const parts = fieldParts(entry);
-        if (parts === undefined) {
-            dropContext(); // structurally invalid entry: no further reasoning
-            return;
-        }
-        const { name, configuration } = parts;
-        // Whether the entry genuinely lacks a configuration member (a malformed
-        // one is the structural layer's complaint, not ours).
-        const configMissing = typeof entry === "string" ||
-            (isPlainObject(entry) && !Object.hasOwn(entry, "configuration"));
-        if (name === "transpose") {
-            if (configMissing) {
-                issues.push({
-                    path: [...path, index],
-                    message: '"transpose" requires a configuration with "order"',
-                    kind: "missing_key",
-                });
-                dropContext();
-                return;
-            }
-            if (configuration !== undefined && !Object.hasOwn(configuration, "order")) {
-                issues.push({
-                    path: [...path, index, "configuration", "order"],
-                    message: "missing required key",
-                    kind: "missing_key",
-                });
-                dropContext();
-                return;
-            }
-            const order = configuration?.["order"];
-            if (!isIntArray(order)) {
-                dropContext(); // shape errors are the schema layer's
-                return;
-            }
-            const orderPath = [...path, index, "configuration", "order"];
-            let sound = true;
-            if (!isPermutation(order)) {
-                sound = false;
-                issues.push({
-                    path: orderPath,
-                    message: `expected a permutation of the integers 0..${order.length - 1}`,
-                    kind: "invalid_value",
-                });
-            }
-            if (dims !== undefined && order.length !== dims) {
-                sound = false;
-                issues.push({
-                    path: orderPath,
-                    message: `expected one entry per array dimension (${dims})`,
-                    kind: "invalid_value",
-                });
-            }
-            if (!sound) {
-                dropContext();
-            }
-            else if (chunkSizes !== undefined) {
-                const sizes = chunkSizes;
-                chunkSizes =
-                    order.length === sizes.length
-                        ? order.map((axis) => sizes[axis])
-                        : undefined;
-            }
-        }
-        else if (name === "sharding_indexed") {
-            if (configMissing) {
-                issues.push({
-                    path: [...path, index],
-                    message: '"sharding_indexed" requires a configuration with "chunk_shape", "codecs", and "index_codecs"',
-                    kind: "missing_key",
-                });
-                dropContext();
-                return;
-            }
-            if (configuration !== undefined) {
-                for (const key of ["chunk_shape", "codecs", "index_codecs"]) {
-                    if (!Object.hasOwn(configuration, key)) {
-                        issues.push({
-                            path: [...path, index, "configuration", key],
-                            message: "missing required key",
-                            kind: "missing_key",
-                        });
-                    }
-                }
-            }
-            const chunkShape = configuration?.["chunk_shape"];
-            if (!isIntArray(chunkShape)) {
-                // Still walk a present inner pipeline (entries deserve their own
-                // verdicts) before the context becomes unknowable.
-                const inner = configuration?.["codecs"];
-                if (Array.isArray(inner)) {
-                    issues.push(...pipelineIssues(inner, [...path, index, "configuration", "codecs"], undefined, undefined));
-                }
-                dropContext();
-                return;
-            }
-            const chunkShapePath = [...path, index, "configuration", "chunk_shape"];
-            if (dims !== undefined && chunkShape.length !== dims) {
-                issues.push({
-                    path: chunkShapePath,
-                    message: `expected one length per array dimension (${dims})`,
-                    kind: "invalid_value",
-                });
-            }
-            else if (chunkSizes !== undefined &&
-                chunkShape.length === chunkSizes.length &&
-                chunkShape.every((length) => length > 0)) {
-                let violation;
-                chunkSizes.forEach((sizes, axis) => {
-                    if (violation !== undefined)
-                        return;
-                    const bad = sizes.find((size) => size % chunkShape[axis] !== 0);
-                    if (bad !== undefined)
-                        violation = { axis, size: bad };
-                });
-                if (violation !== undefined) {
-                    const { axis, size } = violation;
-                    const sizesNow = chunkSizes;
-                    const uniform = sizesNow.every((sizes) => sizes.length === 1);
-                    issues.push({
-                        path: chunkShapePath,
-                        message: uniform
-                            ? `expected ${JSON.stringify(chunkShape)} to evenly divide the outer chunk shape ${JSON.stringify(sizesNow.map((sizes) => sizes[0]))}`
-                            : `expected ${JSON.stringify(chunkShape)} to evenly divide every chunk size of the grid (dimension ${axis} has chunk size ${size})`,
-                        kind: "invalid_value",
-                    });
-                }
-            }
-            const inner = configuration?.["codecs"];
-            if (Array.isArray(inner)) {
-                issues.push(...pipelineIssues(inner, [...path, index, "configuration", "codecs"], chunkShape.length, chunkShape.map((length) => [length])));
-            }
-            // index_codecs encode the shard index, whose shape differs from the
-            // array's — no dimensional context applies there. After the
-            // array -> bytes boundary the dimensional context is spent.
-            dropContext();
-        }
-        else {
-            // A codec this layer cannot reason about (reshape may change a
-            // chunk's rank; unknown codecs may do anything): stale array-level
-            // facts must not judge the codecs after it.
-            dropContext();
-        }
-    });
-    return issues;
-}
+import { fieldParts, isIntArray, isPlainObject } from "./guards.js";
 function arraySemanticsIssues(value) {
     if (!isPlainObject(value) || value["node_type"] !== "array")
         return [];
     const issues = [];
     const shape = isIntArray(value["shape"]) ? value["shape"] : undefined;
-    const dims = shape?.length;
-    const rawGrid = value["chunk_grid"];
-    const grid = fieldParts(rawGrid);
-    // Whether the field genuinely lacks a configuration member (a malformed
-    // one — configuration: 5 — is the structural layer's complaint, not ours).
-    const configMissing = typeof rawGrid === "string" ||
-        (isPlainObject(rawGrid) && !Object.hasOwn(rawGrid, "configuration"));
-    let chunkSizes;
-    if (grid?.name === "regular") {
-        if (configMissing) {
-            issues.push({
-                path: ["chunk_grid"],
-                message: '"regular" requires a configuration with "chunk_shape"',
-                kind: "missing_key",
-            });
-        }
-        else if (grid.configuration !== undefined && !Object.hasOwn(grid.configuration, "chunk_shape")) {
-            issues.push({
-                path: ["chunk_grid", "configuration", "chunk_shape"],
-                message: "missing required key",
-                kind: "missing_key",
-            });
-        }
-        const configured = grid.configuration?.["chunk_shape"];
-        if (isIntArray(configured)) {
-            if (dims !== undefined && configured.length !== dims) {
-                issues.push({
-                    path: ["chunk_grid", "configuration", "chunk_shape"],
-                    message: `expected one length per dimension of shape (${dims})`,
-                    kind: "invalid_value",
-                });
-                // wrong arity: unusable as division context
-            }
-            else {
-                chunkSizes = configured.map((length) => [length]);
-            }
-        }
-    }
-    else if (grid?.name === "rectilinear") {
-        if (configMissing) {
-            issues.push({
-                path: ["chunk_grid"],
-                message: '"rectilinear" requires a configuration with "kind" and "chunk_shapes"',
-                kind: "missing_key",
-            });
-        }
-        else if (grid.configuration !== undefined) {
-            for (const key of ["kind", "chunk_shapes"]) {
-                if (!Object.hasOwn(grid.configuration, key)) {
-                    issues.push({
-                        path: ["chunk_grid", "configuration", key],
-                        message: "missing required key",
-                        kind: "missing_key",
-                    });
-                }
-            }
-        }
-        const specs = grid.configuration?.["chunk_shapes"];
-        if (Array.isArray(specs)) {
-            if (dims !== undefined && specs.length !== dims) {
-                issues.push({
-                    path: ["chunk_grid", "configuration", "chunk_shapes"],
-                    message: `expected one entry per dimension of shape (${dims})`,
-                    kind: "invalid_value",
-                });
-            }
-            else {
-                const perDim = specs.map((spec, dim) => {
-                    // Bare integer: uniform shorthand, no sum constraint (edge chunks
-                    // are permitted, as with the regular grid).
-                    if (Number.isInteger(spec))
-                        return spec > 0 ? [spec] : undefined;
-                    if (!Array.isArray(spec))
-                        return undefined; // registry schema's problem
-                    const sizes = new Set();
-                    let total = 0;
-                    for (const entry of spec) {
-                        if (Number.isInteger(entry)) {
-                            sizes.add(entry);
-                            total += entry;
-                        }
-                        else if (Array.isArray(entry) &&
-                            entry.length === 2 &&
-                            Number.isInteger(entry[0]) &&
-                            Number.isInteger(entry[1])) {
-                            sizes.add(entry[0]);
-                            total += entry[0] * entry[1];
-                        }
-                        else {
-                            return undefined; // malformed entry: registry schema's problem
-                        }
-                    }
-                    const extent = shape?.[dim];
-                    if (extent !== undefined && total !== extent) {
-                        issues.push({
-                            path: ["chunk_grid", "configuration", "chunk_shapes", dim],
-                            message: `expected chunk sizes summing to ${extent} along dimension ${dim}, got ${total}`,
-                            kind: "invalid_value",
-                        });
-                    }
-                    return [...sizes];
-                });
-                if (perDim.every((sizes) => sizes !== undefined)) {
-                    chunkSizes = perDim;
-                }
-            }
-        }
-    }
+    const grid = chunkGridVerdict(value["chunk_grid"], shape);
+    issues.push(...grid.issues.map((issue) => ({ ...issue, path: ["chunk_grid", ...issue.path] })));
     const dataType = fieldParts(value["data_type"]);
     if (dataType !== undefined && "fill_value" in value) {
         const message = fillValueIssue(dataType.name, value["fill_value"]);
@@ -426,7 +38,7 @@ function arraySemanticsIssues(value) {
     }
     const codecs = value["codecs"];
     if (Array.isArray(codecs)) {
-        issues.push(...pipelineIssues(codecs, ["codecs"], dims, chunkSizes));
+        issues.push(...pipelineIssues(codecs, ["codecs"], shape?.length, grid.chunkSizes));
     }
     return issues;
 }

package/dist/semantics.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "zarr-metadata",
-  "version": "0.7.0",
+  "version": "0.8.0",
   "description": "Spec-defined metadata types and validators for Zarr v2 and v3.",
   "license": "MIT",
   "type": "module",