zarr-metadata 0.6.0 → 0.8.0

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@@ -1,43 +1,21 @@
1
1
  /**
2
- * Semantic (cross-field) validation for v3 array metadata.
3
- *
4
- * The structural validators never interpret what an extension point names;
5
- * this module deliberately interprets a small set of WELL-KNOWN core
6
- * extension points to enforce the cross-field rules the specs state in
7
- * prose:
8
- *
9
- * - the `regular` chunk grid REQUIRES a configuration with `chunk_shape`,
10
- * which has one length per dimension of `shape`;
11
- * - the `rectilinear` chunk grid requires a configuration with `kind` and
12
- * `chunk_shapes`; `chunk_shapes` has one entry per dimension, and each
13
- * explicit chunk list (integers and `[size, count]` run-length pairs)
14
- * sums exactly to that dimension's length (the bare-integer uniform
15
- * shorthand carries no sum constraint, like the regular grid);
16
- * - a `transpose` codec's `order` is a permutation of `0..n-1`, with one
17
- * entry per array dimension;
18
- * - a `sharding_indexed` codec's inner `chunk_shape` matches the array's
19
- * dimensionality and evenly divides every chunk it shards — the grid's
20
- * chunk at the top level (each distinct per-dimension size, for
21
- * rectilinear grids), the parent shard's inner chunk when sharding
22
- * nests;
23
- * - `fill_value` has a JSON shape permitted for the named core data type
24
- * (booleans for `bool`, ranged integers for the int types, numbers /
25
- * the "NaN"-family sentinels / width-checked "0x…" strings for the
26
- * float types, two-element arrays for the complex types).
27
- *
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- * Dimensional context is THREADED through codec pipelines rather than
29
- * assumed constant (mirroring zarr-python's chunk-spec threading): a valid
30
- * `transpose` permutes the per-dimension chunk sizes for the codecs after
31
- * it, and any codec this layer cannot reason about — `reshape` may change
32
- * a chunk's rank, and unknown codecs may do anything — invalidates the
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- * dimensional context for the rest of the pipeline instead of letting
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- * stale array-level facts produce false verdicts.
2
+ * Semantic (cross-field) validation for v3 array metadata: the
3
+ * orchestrator. The rules themselves live with their content —
4
+ * `chunk-grids.ts`, `codecs.ts`, and `data-types.ts` each hold the syntax
5
+ * (types) and semantics (procedures) for the names this package
6
+ * interprets, mirroring how the spec, the Python reference's type layout,
7
+ * and the zarr-extensions registry are organized. This module only walks
8
+ * documents: extract shape, ask each content module for its verdicts,
9
+ * thread the chunk-size context into codec pipelines, and descend into a
10
+ * group's inline consolidated entries.
35
11
  *
36
12
  * Unrecognized names are skipped everywhere — the extension name space is
37
13
  * open, and a rule that guessed would lie. This layer has no counterpart
38
14
  * in the Python reference implementation (which stops at structure), so it
39
15
  * is covered by this package's own tests rather than the conformance
40
- * corpus.
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+ * corpus. The structural document layer (validation.ts) stays
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+ * content-agnostic and corpus-governed; it never reads the content
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+ * modules.
41
19
  */
42
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  import { type ErrorTree } from "./errors.js";
43
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  /**
@@ -1 +1 @@
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- {"version":3,"file":"semantics.d.ts","sourceRoot":"","sources":["../src/semantics.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAwCG;AAEH,OAAO,EAAU,KAAK,SAAS,EAAoB,MAAM,aAAa,CAAC;AAwWvE;;;;;;GAMG;AACH,wBAAgB,wBAAwB,CAAC,KAAK,EAAE,OAAO,GAAG,SAAS,CAElE;AA0BD;;;;;;;GAOG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,OAAO,GAAG,SAAS,CAE7D"}
1
+ {"version":3,"file":"semantics.d.ts","sourceRoot":"","sources":["../src/semantics.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAKH,OAAO,EAAU,KAAK,SAAS,EAAoB,MAAM,aAAa,CAAC;AA4BvE;;;;;;GAMG;AACH,wBAAgB,wBAAwB,CAAC,KAAK,EAAE,OAAO,GAAG,SAAS,CAElE;AA0BD;;;;;;;GAOG;AACH,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,OAAO,GAAG,SAAS,CAE7D"}
package/dist/semantics.js CHANGED
@@ -1,368 +1,34 @@
1
1
  /**
2
- * Semantic (cross-field) validation for v3 array metadata.
3
- *
4
- * The structural validators never interpret what an extension point names;
5
- * this module deliberately interprets a small set of WELL-KNOWN core
6
- * extension points to enforce the cross-field rules the specs state in
7
- * prose:
8
- *
9
- * - the `regular` chunk grid REQUIRES a configuration with `chunk_shape`,
10
- * which has one length per dimension of `shape`;
11
- * - the `rectilinear` chunk grid requires a configuration with `kind` and
12
- * `chunk_shapes`; `chunk_shapes` has one entry per dimension, and each
13
- * explicit chunk list (integers and `[size, count]` run-length pairs)
14
- * sums exactly to that dimension's length (the bare-integer uniform
15
- * shorthand carries no sum constraint, like the regular grid);
16
- * - a `transpose` codec's `order` is a permutation of `0..n-1`, with one
17
- * entry per array dimension;
18
- * - a `sharding_indexed` codec's inner `chunk_shape` matches the array's
19
- * dimensionality and evenly divides every chunk it shards — the grid's
20
- * chunk at the top level (each distinct per-dimension size, for
21
- * rectilinear grids), the parent shard's inner chunk when sharding
22
- * nests;
23
- * - `fill_value` has a JSON shape permitted for the named core data type
24
- * (booleans for `bool`, ranged integers for the int types, numbers /
25
- * the "NaN"-family sentinels / width-checked "0x…" strings for the
26
- * float types, two-element arrays for the complex types).
27
- *
28
- * Dimensional context is THREADED through codec pipelines rather than
29
- * assumed constant (mirroring zarr-python's chunk-spec threading): a valid
30
- * `transpose` permutes the per-dimension chunk sizes for the codecs after
31
- * it, and any codec this layer cannot reason about — `reshape` may change
32
- * a chunk's rank, and unknown codecs may do anything — invalidates the
33
- * dimensional context for the rest of the pipeline instead of letting
34
- * stale array-level facts produce false verdicts.
2
+ * Semantic (cross-field) validation for v3 array metadata: the
3
+ * orchestrator. The rules themselves live with their content —
4
+ * `chunk-grids.ts`, `codecs.ts`, and `data-types.ts` each hold the syntax
5
+ * (types) and semantics (procedures) for the names this package
6
+ * interprets, mirroring how the spec, the Python reference's type layout,
7
+ * and the zarr-extensions registry are organized. This module only walks
8
+ * documents: extract shape, ask each content module for its verdicts,
9
+ * thread the chunk-size context into codec pipelines, and descend into a
10
+ * group's inline consolidated entries.
35
11
  *
36
12
  * Unrecognized names are skipped everywhere — the extension name space is
37
13
  * open, and a rule that guessed would lie. This layer has no counterpart
38
14
  * in the Python reference implementation (which stops at structure), so it
39
15
  * is covered by this package's own tests rather than the conformance
40
- * corpus.
16
+ * corpus. The structural document layer (validation.ts) stays
17
+ * content-agnostic and corpus-governed; it never reads the content
18
+ * modules.
41
19
  */
20
+ import { chunkGridVerdict } from "./chunk-grids.js";
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+ import { pipelineIssues } from "./codecs.js";
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+ import { fillValueIssue } from "./data-types.js";
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  import { treeOf } from "./errors.js";
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- function isPlainObject(value) {
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- if (typeof value !== "object" || value === null || Array.isArray(value))
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- return false;
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- const proto = Object.getPrototypeOf(value);
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- return proto === null || proto === Object.prototype;
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- }
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- function isIntArray(value) {
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- return (Array.isArray(value) &&
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- Object.keys(value).length === value.length &&
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- value.every((item) => Number.isInteger(item)));
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- }
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- /** The `{name, configuration}` of a metadata field, when extractable. */
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- function fieldParts(field) {
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- if (typeof field === "string")
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- return { name: field, configuration: undefined };
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- if (isPlainObject(field) && typeof field["name"] === "string") {
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- const configuration = field["configuration"];
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- return {
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- name: field["name"],
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- configuration: isPlainObject(configuration) ? configuration : undefined,
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- };
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- }
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- return undefined;
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- }
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- // --- fill_value vs data_type ----------------------------------------------
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- const INT_RANGES = {
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- int8: [-128, 127],
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- int16: [-32768, 32767],
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- int32: [-2147483648, 2147483647],
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- int64: [-9223372036854775808, 9223372036854775807],
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- uint8: [0, 255],
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- uint16: [0, 65535],
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- uint32: [0, 4294967295],
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- uint64: [0, 18446744073709551615],
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- };
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- const FLOAT_HEX_DIGITS = {
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- float16: 4,
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- float32: 8,
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- float64: 16,
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- };
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- /** Hex digit width of each complex type's component floats. */
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- const COMPLEX_COMPONENT_HEX_DIGITS = {
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- complex64: 8,
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- complex128: 16,
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- };
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- function isFloatFill(value, hexDigits) {
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- if (typeof value === "number")
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- return true;
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- if (typeof value !== "string")
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- return false;
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- if (value === "NaN" || value === "Infinity" || value === "-Infinity")
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- return true;
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- return new RegExp(`^0x[0-9a-fA-F]{${hexDigits}}$`).test(value);
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- }
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- function floatFillMessage(name, hexDigits) {
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- return (`expected a number, "NaN", "Infinity", "-Infinity", or a ` +
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- `${hexDigits}-hex-digit "0x..." string for data type ${JSON.stringify(name)}`);
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- }
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- /** The fill_value issue for a KNOWN core data type, if any; undefined otherwise. */
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- function fillValueIssue(dataTypeName, fill) {
103
- if (dataTypeName === "bool") {
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- return typeof fill === "boolean"
105
- ? undefined
106
- : 'expected a boolean fill value for data type "bool"';
107
- }
108
- const intRange = INT_RANGES[dataTypeName];
109
- if (intRange !== undefined) {
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- const [low, high] = intRange;
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- return Number.isInteger(fill) && fill >= low && fill <= high
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- ? undefined
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- : `expected an integer in [${low}, ${high}] for data type ${JSON.stringify(dataTypeName)}`;
114
- }
115
- const floatDigits = FLOAT_HEX_DIGITS[dataTypeName];
116
- if (floatDigits !== undefined) {
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- return isFloatFill(fill, floatDigits)
118
- ? undefined
119
- : floatFillMessage(dataTypeName, floatDigits);
120
- }
121
- const complexDigits = COMPLEX_COMPONENT_HEX_DIGITS[dataTypeName];
122
- if (complexDigits !== undefined) {
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- const ok = Array.isArray(fill) &&
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- fill.length === 2 &&
125
- fill.every((part) => isFloatFill(part, complexDigits));
126
- return ok
127
- ? undefined
128
- : `expected a two-element [real, imaginary] array for data type ${JSON.stringify(dataTypeName)}`;
129
- }
130
- return undefined; // unrecognized data type: no verdict
131
- }
132
- // --- codec pipelines (transpose / sharding) --------------------------------
133
- function isPermutation(order) {
134
- const seen = new Set(order);
135
- return seen.size === order.length && order.every((entry) => entry >= 0 && entry < order.length);
136
- }
137
- /**
138
- * Walk one codec pipeline. `dims` is the array dimensionality at this point
139
- * (undefined when unknowable); `outerChunkSizes` holds the distinct chunk
140
- * lengths per dimension this pipeline may encode — what a sharding codec's
141
- * inner chunks must divide. A regular grid contributes one size per
142
- * dimension; a rectilinear grid may contribute several.
143
- */
144
- function pipelineIssues(pipeline, path, initialDims, initialChunkSizes) {
145
- const issues = [];
146
- // The dimensional context THREADS through the pipeline: transpose permutes
147
- // it, and anything this layer cannot reason about invalidates it for the
148
- // remaining codecs.
149
- let dims = initialDims;
150
- let chunkSizes = initialChunkSizes;
151
- const dropContext = () => {
152
- dims = undefined;
153
- chunkSizes = undefined;
154
- };
155
- pipeline.forEach((entry, index) => {
156
- const parts = fieldParts(entry);
157
- if (parts === undefined) {
158
- dropContext(); // structurally invalid entry: no further reasoning
159
- return;
160
- }
161
- const { name, configuration } = parts;
162
- if (name === "transpose") {
163
- const order = configuration?.["order"];
164
- if (!isIntArray(order)) {
165
- dropContext(); // shape errors are the schema layer's
166
- return;
167
- }
168
- const orderPath = [...path, index, "configuration", "order"];
169
- let sound = true;
170
- if (!isPermutation(order)) {
171
- sound = false;
172
- issues.push({
173
- path: orderPath,
174
- message: `expected a permutation of the integers 0..${order.length - 1}`,
175
- kind: "invalid_value",
176
- });
177
- }
178
- if (dims !== undefined && order.length !== dims) {
179
- sound = false;
180
- issues.push({
181
- path: orderPath,
182
- message: `expected one entry per array dimension (${dims})`,
183
- kind: "invalid_value",
184
- });
185
- }
186
- if (!sound) {
187
- dropContext();
188
- }
189
- else if (chunkSizes !== undefined) {
190
- const sizes = chunkSizes;
191
- chunkSizes =
192
- order.length === sizes.length
193
- ? order.map((axis) => sizes[axis])
194
- : undefined;
195
- }
196
- }
197
- else if (name === "sharding_indexed") {
198
- const chunkShape = configuration?.["chunk_shape"];
199
- if (!isIntArray(chunkShape)) {
200
- dropContext();
201
- return;
202
- }
203
- const chunkShapePath = [...path, index, "configuration", "chunk_shape"];
204
- if (dims !== undefined && chunkShape.length !== dims) {
205
- issues.push({
206
- path: chunkShapePath,
207
- message: `expected one length per array dimension (${dims})`,
208
- kind: "invalid_value",
209
- });
210
- }
211
- else if (chunkSizes !== undefined &&
212
- chunkShape.length === chunkSizes.length &&
213
- chunkShape.every((length) => length > 0)) {
214
- let violation;
215
- chunkSizes.forEach((sizes, axis) => {
216
- if (violation !== undefined)
217
- return;
218
- const bad = sizes.find((size) => size % chunkShape[axis] !== 0);
219
- if (bad !== undefined)
220
- violation = { axis, size: bad };
221
- });
222
- if (violation !== undefined) {
223
- const { axis, size } = violation;
224
- const sizesNow = chunkSizes;
225
- const uniform = sizesNow.every((sizes) => sizes.length === 1);
226
- issues.push({
227
- path: chunkShapePath,
228
- message: uniform
229
- ? `expected ${JSON.stringify(chunkShape)} to evenly divide the outer chunk shape ${JSON.stringify(sizesNow.map((sizes) => sizes[0]))}`
230
- : `expected ${JSON.stringify(chunkShape)} to evenly divide every chunk size of the grid (dimension ${axis} has chunk size ${size})`,
231
- kind: "invalid_value",
232
- });
233
- }
234
- }
235
- const inner = configuration?.["codecs"];
236
- if (Array.isArray(inner)) {
237
- issues.push(...pipelineIssues(inner, [...path, index, "configuration", "codecs"], chunkShape.length, chunkShape.map((length) => [length])));
238
- }
239
- // index_codecs encode the shard index, whose shape differs from the
240
- // array's — no dimensional context applies there. After the
241
- // array -> bytes boundary the dimensional context is spent.
242
- dropContext();
243
- }
244
- else {
245
- // A codec this layer cannot reason about (reshape may change a
246
- // chunk's rank; unknown codecs may do anything): stale array-level
247
- // facts must not judge the codecs after it.
248
- dropContext();
249
- }
250
- });
251
- return issues;
252
- }
24
+ import { fieldParts, isIntArray, isPlainObject } from "./guards.js";
253
25
  function arraySemanticsIssues(value) {
254
26
  if (!isPlainObject(value) || value["node_type"] !== "array")
255
27
  return [];
256
28
  const issues = [];
257
29
  const shape = isIntArray(value["shape"]) ? value["shape"] : undefined;
258
- const dims = shape?.length;
259
- const rawGrid = value["chunk_grid"];
260
- const grid = fieldParts(rawGrid);
261
- // Whether the field genuinely lacks a configuration member (a malformed
262
- // one — configuration: 5 — is the structural layer's complaint, not ours).
263
- const configMissing = typeof rawGrid === "string" ||
264
- (isPlainObject(rawGrid) && !Object.hasOwn(rawGrid, "configuration"));
265
- let chunkSizes;
266
- if (grid?.name === "regular") {
267
- if (configMissing) {
268
- issues.push({
269
- path: ["chunk_grid"],
270
- message: '"regular" requires a configuration with "chunk_shape"',
271
- kind: "missing_key",
272
- });
273
- }
274
- else if (grid.configuration !== undefined && !Object.hasOwn(grid.configuration, "chunk_shape")) {
275
- issues.push({
276
- path: ["chunk_grid", "configuration", "chunk_shape"],
277
- message: "missing required key",
278
- kind: "missing_key",
279
- });
280
- }
281
- const configured = grid.configuration?.["chunk_shape"];
282
- if (isIntArray(configured)) {
283
- if (dims !== undefined && configured.length !== dims) {
284
- issues.push({
285
- path: ["chunk_grid", "configuration", "chunk_shape"],
286
- message: `expected one length per dimension of shape (${dims})`,
287
- kind: "invalid_value",
288
- });
289
- // wrong arity: unusable as division context
290
- }
291
- else {
292
- chunkSizes = configured.map((length) => [length]);
293
- }
294
- }
295
- }
296
- else if (grid?.name === "rectilinear") {
297
- if (configMissing) {
298
- issues.push({
299
- path: ["chunk_grid"],
300
- message: '"rectilinear" requires a configuration with "kind" and "chunk_shapes"',
301
- kind: "missing_key",
302
- });
303
- }
304
- else if (grid.configuration !== undefined) {
305
- for (const key of ["kind", "chunk_shapes"]) {
306
- if (!Object.hasOwn(grid.configuration, key)) {
307
- issues.push({
308
- path: ["chunk_grid", "configuration", key],
309
- message: "missing required key",
310
- kind: "missing_key",
311
- });
312
- }
313
- }
314
- }
315
- const specs = grid.configuration?.["chunk_shapes"];
316
- if (Array.isArray(specs)) {
317
- if (dims !== undefined && specs.length !== dims) {
318
- issues.push({
319
- path: ["chunk_grid", "configuration", "chunk_shapes"],
320
- message: `expected one entry per dimension of shape (${dims})`,
321
- kind: "invalid_value",
322
- });
323
- }
324
- else {
325
- const perDim = specs.map((spec, dim) => {
326
- // Bare integer: uniform shorthand, no sum constraint (edge chunks
327
- // are permitted, as with the regular grid).
328
- if (Number.isInteger(spec))
329
- return spec > 0 ? [spec] : undefined;
330
- if (!Array.isArray(spec))
331
- return undefined; // registry schema's problem
332
- const sizes = new Set();
333
- let total = 0;
334
- for (const entry of spec) {
335
- if (Number.isInteger(entry)) {
336
- sizes.add(entry);
337
- total += entry;
338
- }
339
- else if (Array.isArray(entry) &&
340
- entry.length === 2 &&
341
- Number.isInteger(entry[0]) &&
342
- Number.isInteger(entry[1])) {
343
- sizes.add(entry[0]);
344
- total += entry[0] * entry[1];
345
- }
346
- else {
347
- return undefined; // malformed entry: registry schema's problem
348
- }
349
- }
350
- const extent = shape?.[dim];
351
- if (extent !== undefined && total !== extent) {
352
- issues.push({
353
- path: ["chunk_grid", "configuration", "chunk_shapes", dim],
354
- message: `expected chunk sizes summing to ${extent} along dimension ${dim}, got ${total}`,
355
- kind: "invalid_value",
356
- });
357
- }
358
- return [...sizes];
359
- });
360
- if (perDim.every((sizes) => sizes !== undefined)) {
361
- chunkSizes = perDim;
362
- }
363
- }
364
- }
365
- }
30
+ const grid = chunkGridVerdict(value["chunk_grid"], shape);
31
+ issues.push(...grid.issues.map((issue) => ({ ...issue, path: ["chunk_grid", ...issue.path] })));
366
32
  const dataType = fieldParts(value["data_type"]);
367
33
  if (dataType !== undefined && "fill_value" in value) {
368
34
  const message = fillValueIssue(dataType.name, value["fill_value"]);
@@ -372,7 +38,7 @@ function arraySemanticsIssues(value) {
372
38
  }
373
39
  const codecs = value["codecs"];
374
40
  if (Array.isArray(codecs)) {
375
- issues.push(...pipelineIssues(codecs, ["codecs"], dims, chunkSizes));
41
+ issues.push(...pipelineIssues(codecs, ["codecs"], shape?.length, grid.chunkSizes));
376
42
  }
377
43
  return issues;
378
44
  }
@@ -1 +1 @@
1
- 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1
+ {"version":3,"file":"semantics.js","sourceRoot":"","sources":["../src/semantics.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAEH,OAAO,EAAE,gBAAgB,EAAE,MAAM,kBAAkB,CAAC;AACpD,OAAO,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAC7C,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,MAAM,EAAoC,MAAM,aAAa,CAAC;AACvE,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAEpE,SAAS,oBAAoB,CAAC,KAAc;IAC1C,IAAI,CAAC,aAAa,CAAC,KAAK,CAAC,IAAI,KAAK,CAAC,WAAW,CAAC,KAAK,OAAO;QAAE,OAAO,EAAE,CAAC;IACvE,MAAM,MAAM,GAAkB,EAAE,CAAC;IACjC,MAAM,KAAK,GAAG,UAAU,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;IAEtE,MAAM,IAAI,GAAG,gBAAgB,CAAC,KAAK,CAAC,YAAY,CAAC,EAAE,KAAK,CAAC,CAAC;IAC1D,MAAM,CAAC,IAAI,CACT,GAAG,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,EAAE,GAAG,KAAK,EAAE,IAAI,EAAE,CAAC,YAAY,EAAE,GAAG,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CACnF,CAAC;IAEF,MAAM,QAAQ,GAAG,UAAU,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC;IAChD,IAAI,QAAQ,KAAK,SAAS,IAAI,YAAY,IAAI,KAAK,EAAE,CAAC;QACpD,MAAM,OAAO,GAAG,cAAc,CAAC,QAAQ,CAAC,IAAI,EAAE,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC;QACnE,IAAI,OAAO,KAAK,SAAS,EAAE,CAAC;YAC1B,MAAM,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,CAAC,YAAY,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,eAAe,EAAE,CAAC,CAAC;QACxE,CAAC;IACH,CAAC;IAED,MAAM,MAAM,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC;IAC/B,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE,CAAC;QAC1B,MAAM,CAAC,IAAI,CAAC,GAAG,cAAc,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC;IACrF,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,wBAAwB,CAAC,KAAc;IACrD,OAAO,MAAM,CAAC,oBAAoB,CAAC,KAAK,CAAC,CAAC,CAAC;AAC7C,CAAC;AAED,0EAA0E;AAC1E,iEAAiE;AACjE,MAAM,sBAAsB,GAAG,EAAE,CAAC;AAElC,SAAS,sBAAsB,CAAC,KAAc,EAAE,KAAa;IAC3D,IAAI,KAAK,IAAI,sBAAsB,IAAI,CAAC,aAAa,CAAC,KAAK,CAAC;QAAE,OAAO,EAAE,CAAC;IACxE,IAAI,KAAK,CAAC,WAAW,CAAC,KAAK,OAAO;QAAE,OAAO,oBAAoB,CAAC,KAAK,CAAC,CAAC;IACvE,IAAI,KAAK,CAAC,WAAW,CAAC,KAAK,OAAO;QAAE,OAAO,EAAE,CAAC;IAC9C,MAAM,YAAY,GAAG,KAAK,CAAC,uBAAuB,CAAC,CAAC;IACpD,IAAI,CAAC,aAAa,CAAC,YAAY,CAAC;QAAE,OAAO,EAAE,CAAC;IAC5C,MAAM,OAAO,GAAG,YAAY,CAAC,UAAU,CAAC,CAAC;IACzC,IAAI,CAAC,aAAa,CAAC,OAAO,CAAC;QAAE,OAAO,EAAE,CAAC;IACvC,MAAM,MAAM,GAAkB,EAAE,CAAC;IACjC,KAAK,MAAM,CAAC,GAAG,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE,CAAC;QACnD,MAAM,CAAC,IAAI,CACT,GAAG,sBAAsB,CAAC,KAAK,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;YAC1D,GAAG,KAAK;YACR,IAAI,EAAE,CAAC,uBAAuB,EAAE,UAAU,EAAE,GAAG,EAAE,GAAG,KAAK,CAAC,IAAI,CAAC;SAChE,CAAC,CAAC,CACJ,CAAC;IACJ,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,mBAAmB,CAAC,KAAc;IAChD,OAAO,MAAM,CAAC,sBAAsB,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC;AAClD,CAAC"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "zarr-metadata",
3
- "version": "0.6.0",
3
+ "version": "0.8.0",
4
4
  "description": "Spec-defined metadata types and validators for Zarr v2 and v3.",
5
5
  "license": "MIT",
6
6
  "type": "module",
@@ -0,0 +1,158 @@
1
+ /**
2
+ * The chunk grids this package interprets: syntax (configuration types) and
3
+ * semantics (the spec's prose rules) for `regular` and `rectilinear`, in
4
+ * one place per grid. The structural document layer never reads this
5
+ * module — extension points are uninterpreted there by spec design.
6
+ */
7
+
8
+ import type { PathedIssue } from "./errors.js";
9
+ import { configurationMissing, fieldParts, isIntArray, isPlainObject } from "./guards.js";
10
+
11
+ /** Configuration of the core `regular` chunk grid. */
12
+ export interface RegularChunkGridConfiguration {
13
+ chunk_shape: number[];
14
+ }
15
+
16
+ /**
17
+ * One dimension's spec in a rectilinear grid: a bare integer (uniform
18
+ * shorthand, no sum constraint) or a list of chunk sizes and
19
+ * `[size, count]` run-length pairs that must sum to the dimension length.
20
+ */
21
+ export type RectilinearDimSpec = number | Array<number | [number, number]>;
22
+
23
+ /** Configuration of the zarr-extensions `rectilinear` chunk grid. */
24
+ export interface RectilinearChunkGridConfiguration {
25
+ kind: "inline";
26
+ chunk_shapes: RectilinearDimSpec[];
27
+ }
28
+
29
+ /** What interpreting a chunk grid yields for the rest of the semantic layer. */
30
+ export interface ChunkGridVerdict {
31
+ /** Issues, pathed relative to the `chunk_grid` field. */
32
+ issues: PathedIssue[];
33
+ /**
34
+ * Distinct chunk lengths per dimension — the division context a
35
+ * sharding codec's inner chunks must satisfy — when derivable.
36
+ */
37
+ chunkSizes: number[][] | undefined;
38
+ }
39
+
40
+ function regularIssues(rawGrid: unknown, shape: number[] | undefined): ChunkGridVerdict {
41
+ const issues: PathedIssue[] = [];
42
+ let chunkSizes: number[][] | undefined;
43
+ const configuration = fieldParts(rawGrid)?.configuration;
44
+ if (configurationMissing(rawGrid)) {
45
+ issues.push({
46
+ path: [],
47
+ message: '"regular" requires a configuration with "chunk_shape"',
48
+ kind: "missing_key",
49
+ });
50
+ } else if (configuration !== undefined && !Object.hasOwn(configuration, "chunk_shape")) {
51
+ issues.push({
52
+ path: ["configuration", "chunk_shape"],
53
+ message: "missing required key",
54
+ kind: "missing_key",
55
+ });
56
+ }
57
+ const configured = configuration?.["chunk_shape"];
58
+ if (isIntArray(configured)) {
59
+ if (shape !== undefined && configured.length !== shape.length) {
60
+ issues.push({
61
+ path: ["configuration", "chunk_shape"],
62
+ message: `expected one length per dimension of shape (${shape.length})`,
63
+ kind: "invalid_value",
64
+ });
65
+ // wrong arity: unusable as division context
66
+ } else {
67
+ chunkSizes = configured.map((length) => [length]);
68
+ }
69
+ }
70
+ return { issues, chunkSizes };
71
+ }
72
+
73
+ function rectilinearIssues(rawGrid: unknown, shape: number[] | undefined): ChunkGridVerdict {
74
+ const issues: PathedIssue[] = [];
75
+ let chunkSizes: number[][] | undefined;
76
+ const configuration = fieldParts(rawGrid)?.configuration;
77
+ if (configurationMissing(rawGrid)) {
78
+ issues.push({
79
+ path: [],
80
+ message: '"rectilinear" requires a configuration with "kind" and "chunk_shapes"',
81
+ kind: "missing_key",
82
+ });
83
+ } else if (configuration !== undefined) {
84
+ for (const key of ["kind", "chunk_shapes"]) {
85
+ if (!Object.hasOwn(configuration, key)) {
86
+ issues.push({
87
+ path: ["configuration", key],
88
+ message: "missing required key",
89
+ kind: "missing_key",
90
+ });
91
+ }
92
+ }
93
+ }
94
+ const specs = configuration?.["chunk_shapes"];
95
+ if (Array.isArray(specs)) {
96
+ if (shape !== undefined && specs.length !== shape.length) {
97
+ issues.push({
98
+ path: ["configuration", "chunk_shapes"],
99
+ message: `expected one entry per dimension of shape (${shape.length})`,
100
+ kind: "invalid_value",
101
+ });
102
+ } else {
103
+ const perDim: (number[] | undefined)[] = specs.map((spec, dim) => {
104
+ // Bare integer: uniform shorthand, no sum constraint (edge chunks
105
+ // are permitted, as with the regular grid).
106
+ if (Number.isInteger(spec)) return (spec as number) > 0 ? [spec as number] : undefined;
107
+ if (!Array.isArray(spec)) return undefined; // registry schema's problem
108
+ const sizes = new Set<number>();
109
+ let total = 0;
110
+ for (const entry of spec) {
111
+ if (Number.isInteger(entry)) {
112
+ sizes.add(entry as number);
113
+ total += entry as number;
114
+ } else if (
115
+ Array.isArray(entry) &&
116
+ entry.length === 2 &&
117
+ Number.isInteger(entry[0]) &&
118
+ Number.isInteger(entry[1])
119
+ ) {
120
+ sizes.add(entry[0] as number);
121
+ total += (entry[0] as number) * (entry[1] as number);
122
+ } else {
123
+ return undefined; // malformed entry: registry schema's problem
124
+ }
125
+ }
126
+ const extent = shape?.[dim];
127
+ if (extent !== undefined && total !== extent) {
128
+ issues.push({
129
+ path: ["configuration", "chunk_shapes", dim],
130
+ message: `expected chunk sizes summing to ${extent} along dimension ${dim}, got ${total}`,
131
+ kind: "invalid_value",
132
+ });
133
+ }
134
+ return [...sizes];
135
+ });
136
+ if (perDim.every((sizes) => sizes !== undefined)) {
137
+ chunkSizes = perDim as number[][];
138
+ }
139
+ }
140
+ }
141
+ return { issues, chunkSizes };
142
+ }
143
+
144
+ /**
145
+ * Interpret a document's `chunk_grid` field: required members, cross-field
146
+ * rules against `shape`, and the division context for codec pipelines.
147
+ * Unrecognized grid names yield no issues and no context — the extension
148
+ * name space is open.
149
+ */
150
+ export function chunkGridVerdict(rawGrid: unknown, shape: number[] | undefined): ChunkGridVerdict {
151
+ if (!isPlainObject(rawGrid) && typeof rawGrid !== "string") {
152
+ return { issues: [], chunkSizes: undefined }; // structural layer's problem
153
+ }
154
+ const name = fieldParts(rawGrid)?.name;
155
+ if (name === "regular") return regularIssues(rawGrid, shape);
156
+ if (name === "rectilinear") return rectilinearIssues(rawGrid, shape);
157
+ return { issues: [], chunkSizes: undefined };
158
+ }