ysk-server-core 1.0.0 → 1.1.0

package/README.md

@@ -1,16 +1,33 @@
-# ysk-server-core
+<p align="center">
+  <img src="https://raw.githubusercontent.com/yanshekki/ysk-server/main/apps/web/public/logo.svg" width="56" alt="YSK Server" />
+</p>
 
-Core business logic for **[YSK Server](https://www.npmjs.com/package/ysk-server)** — security, hosting, LLM, updates, email, and more.
+<h1 align="center">ysk-server-core</h1>
 
-Most users should install the product only:
+<p align="center">
+  Hosting, security, and apply logic for
+  <a href="https://www.npmjs.com/package/ysk-server"><strong>YSK Server</strong></a>.
+</p>
+
+<p align="center">
+  <a href="https://www.npmjs.com/package/ysk-server-core"><img alt="ysk-server-core" src="https://img.shields.io/npm/v/ysk-server-core.svg?style=flat-square&color=2ea043" /></a>
+  <a href="https://www.npmjs.com/package/ysk-server"><img alt="product" src="https://img.shields.io/npm/v/ysk-server.svg?style=flat-square&color=2ea043&label=ysk-server" /></a>
+  <img alt="MIT" src="https://img.shields.io/badge/license-MIT-2ea043?style=flat-square" />
+</p>
+
+Operators should install the **product**, not this library:
 
 ```bash
 npm install -g ysk-server
 ```
 
+Host mutations stay honest: **root** + `YSK_EXECUTE=1`, or the result is dry-run / blocked.
+
 | | |
-|--|--|
-| **Source** | [github.com/yanshekki/ysk-server](https://github.com/yanshekki/ysk-server) (`packages/core`) |
-| **License** | MIT |
+|:--|:--|
 | **Product** | [ysk-server](https://www.npmjs.com/package/ysk-server) |
 | **Depends on** | [ysk-server-shared](https://www.npmjs.com/package/ysk-server-shared) |
+| **Source** | [github.com/yanshekki/ysk-server](https://github.com/yanshekki/ysk-server) (`packages/core`) |
+| **License** | MIT |
+
+This package is **bundled** inside `ysk-server`. You do not need to depend on it unless you are extending the monorepo.

package/dist/db/database.d.ts

@@ -3,7 +3,7 @@
  *
  * Backends (D4):
  * - json (default): atomic ysk.json
- * - sqlite: better-sqlite3 document blob (YSK_STORE=sqlite or path ends .sqlite)
+ * - sqlite: sql.js document blob (YSK_STORE=sqlite or path ends .sqlite)
  * - postgres: optional pg + YSK_DATABASE_URL
  *
  * All backends are JsonStore (or subclass) — same snapshot API.

package/dist/db/database.js

@@ -3,7 +3,7 @@
  *
  * Backends (D4):
  * - json (default): atomic ysk.json
- * - sqlite: better-sqlite3 document blob (YSK_STORE=sqlite or path ends .sqlite)
+ * - sqlite: sql.js document blob (YSK_STORE=sqlite or path ends .sqlite)
  * - postgres: optional pg + YSK_DATABASE_URL
  *
  * All backends are JsonStore (or subclass) — same snapshot API.

package/dist/db/document-store.d.ts

@@ -31,7 +31,9 @@ export declare class ShellSqliteJsonStore extends JsonStore {
     private _sqlitePath;
     get sqlitePath(): string;
     constructor(sqlitePath: string, mirrorJsonPath: string);
-    persist(): void;
+    persist(opts?: {
+        replace?: boolean;
+    }): void;
 }
 /** JsonStore dual-write to Postgres (experimental). */
 export declare class PostgresJsonStore extends JsonStore {
@@ -39,7 +41,9 @@ export declare class PostgresJsonStore extends JsonStore {
     private _connectionUrl;
     get connectionUrl(): string;
     constructor(url: string, mirrorJsonPath: string);
-    persist(): void;
+    persist(opts?: {
+        replace?: boolean;
+    }): void;
 }
 export declare function openSqliteDocumentStore(sqlitePath: string): ShellSqliteJsonStore;
 export declare function openPostgresDocumentStore(url: string): PostgresJsonStore;

package/dist/db/document-store.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"document-store.d.ts","sourceRoot":"","sources":["../../src/db/document-store.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAaH,OAAO,EAAE,SAAS,EAAkB,KAAK,WAAW,EAAE,MAAM,YAAY,CAAC;AAEzE,MAAM,MAAM,gBAAgB,GAAG,MAAM,GAAG,QAAQ,GAAG,UAAU,CAAC;AAE9D,MAAM,MAAM,gBAAgB,GAAG;IAC7B,IAAI,CAAC,EAAE,gBAAgB,CAAC;IACxB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,GAAG,CAAC,EAAE,MAAM,CAAC;CACd,CAAC;AAIF,wBAAgB,mBAAmB,CAAC,IAAI,GAAE,gBAAqB,GAAG;IAChE,IAAI,EAAE,gBAAgB,CAAC;IACvB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,GAAG,CAAC,EAAE,MAAM,CAAC;CACd,CAmBA;AA2BD,sEAAsE;AACtE,qBAAa,oBAAqB,SAAQ,SAAS;IACjD,QAAQ,CAAC,WAAW,EAAE,gBAAgB,CAAY;IAClD;;;OAGG;IACH,OAAO,CAAC,WAAW,CAAqB;IAExC,IAAI,UAAU,IAAI,MAAM,CAEvB;gBAEW,UAAU,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM;IAK7C,OAAO,CAAC,IAAI,CAAC,EAAE;QAAE,OAAO,CAAC,EAAE,OAAO,CAAA;KAAE,GAAG,IAAI;CAkErD;AAED,uDAAuD;AACvD,qBAAa,iBAAkB,SAAQ,SAAS;IAC9C,QAAQ,CAAC,WAAW,EAAE,gBAAgB,CAAc;IACpD,OAAO,CAAC,cAAc,CAAqB;IAE3C,IAAI,aAAa,IAAI,MAAM,CAE1B;gBAEW,GAAG,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM;IAKtC,OAAO,CAAC,IAAI,CAAC,EAAE;QAAE,OAAO,CAAC,EAAE,OAAO,CAAA;KAAE,GAAG,IAAI;CA4CrD;AAED,wBAAgB,uBAAuB,CAAC,UAAU,EAAE,MAAM,GAAG,oBAAoB,CAkDhF;AAED,wBAAgB,yBAAyB,CAAC,GAAG,EAAE,MAAM,GAAG,iBAAiB,CAyCxE;AAED,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,gBAAgB,GAAG,SAAS,CAkBvE;AAED,wBAAsB,iBAAiB,CAAC,IAAI,EAAE,gBAAgB,GAAG,OAAO,CAAC,SAAS,CAAC,CAElF;AAED,wBAAgB,mBAAmB,CACjC,EAAE,EAAE,WAAW,EACf,OAAO,EAAE,MAAM,GACd;IAAE,EAAE,EAAE,IAAI,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAO3C;AAED,wBAAgB,mBAAmB,CACjC,EAAE,EAAE,WAAW,EACf,MAAM,EAAE,MAAM,GACb;IAAE,EAAE,EAAE,IAAI,CAAC;IAAC,KAAK,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAkB/C;AAED,wBAAgB,WAAW,CACzB,EAAE,EAAE,WAAW,EACf,YAAY,CAAC,EAAE,MAAM,GACpB;IACD,EAAE,EAAE,IAAI,CAAC;IACT,IAAI,EAAE,gBAAgB,CAAC;IACvB,QAAQ,EAAE,MAAM,CAAC;IACjB,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,KAAK,EAAE,MAAM,EAAE,CAAC;CACjB,CAyBA"}

package/dist/db/document-store.js

@@ -73,8 +73,8 @@ export class ShellSqliteJsonStore extends JsonStore {
         super(mirrorJsonPath);
         this._sqlitePath = sqlitePath;
     }
-    persist() {
-        super.persist();
+    persist(opts) {
+        super.persist(opts);
         const sqlitePath = this._sqlitePath;
         // super() may invoke persist before _sqlitePath is assigned
         if (!sqlitePath)
@@ -151,8 +151,8 @@ export class PostgresJsonStore extends JsonStore {
         super(mirrorJsonPath);
         this._connectionUrl = url;
     }
-    persist() {
-        super.persist();
+    persist(opts) {
+        super.persist(opts);
         if (!this._connectionUrl)
             return;
         const body = JSON.stringify(this.snapshot, null, 2);
@@ -326,7 +326,7 @@ export function importStoreDocument(db, inPath) {
         delete snap[k];
     }
     Object.assign(snap, raw);
-    db.persist();
+    db.persist({ replace: true });
     return {
         ok: true,
         users: Array.isArray(db.snapshot.users) ? db.snapshot.users.length : 0,

package/dist/db/document-store.js.map

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package/dist/db/store.d.ts

@@ -1,6 +1,6 @@
 /**
  * Durable JSON control-plane store (atomic writes).
- * Used instead of native better-sqlite3 when the environment cannot load it.
+ * Default backend. SQLite uses sql.js (no native addon) when YSK_STORE=sqlite.
  * Provides real restart-safe persistence for users/sessions/projects/audit.
  */
 import type { CapabilityId, SystemRole, ApprovalStatus, RiskTier, OperationLevel, HostingRuntime } from 'ysk-server-shared';
@@ -129,6 +129,15 @@ export interface StoreProject {
     git_url?: string;
     git_branch?: string;
     git_commit?: string;
+    git_shallow?: boolean;
+    git_last_error?: {
+        code: string;
+        message: string;
+        at: string;
+    };
+    git_auth_kind?: 'none' | 'ssh' | 'https-token';
+    git_identity_id?: string;
+    git_hook_enabled?: boolean;
     /** App env vars written to .env */
     env_vars?: Record<string, string>;
     last_backup_path?: string;
@@ -149,6 +158,8 @@ export interface StoreProject {
     account_locked?: boolean;
     /** Last process deploy entry (server.js, main:app, ./app, …) */
     deploy_entry?: string;
+    /** Last resolved runtime binary (may differ from planned runtime_version) */
+    runtime_bin?: string;
     /** Last deploy operator notes (short, newest first, max ~8) */
     last_deploy_notes?: string[];
     /**
@@ -244,12 +255,30 @@ export interface StoreData {
     /** Global backup exclusion globs */
     backup_exclusions?: string[];
 }
+/** Never clobber these when this process did not change them (2FA / password). */
+export declare const MERGE_PROTECT_FIELDS: readonly ["totp_secret", "totp_enabled", "totp_last_step", "totp_recovery_hashes", "password_hash", "password_salt"];
+/**
+ * Three-way merge: keep our edits/deletes, pick up rows another process inserted.
+ * Same id: unchanged local row takes disk; both-changed keeps totp_/password_ if we did not touch them.
+ */
+export declare function mergeIdArray<T>(baseline: T[], ours: T[], disk: T[]): T[];
+export declare function hydrateStoreData(raw: unknown): StoreData;
+/** Three-way settings: unchanged local keys take disk (WebDAV / last_backup_run). */
+export declare function mergeSettingsMap(baseline: Record<string, string>, ours: Record<string, string>, disk: Record<string, string>): Record<string, string>;
+export declare function mergeStoreData(baseline: StoreData, ours: StoreData, disk: StoreData): StoreData;
 export declare class JsonStore {
     private data;
+    private baseline;
+    private loadedMtime;
     private readonly path;
     constructor(path: string);
     get snapshot(): StoreData;
-    persist(): void;
+    /** Pull in rows another process wrote. Safe to call before mutating. */
+    reloadIfStale(): void;
+    private mergeFromDiskUnlocked;
+    persist(opts?: {
+        replace?: boolean;
+    }): void;
     close(): void;
 }
 /** Control-plane DB handle (JsonStore; sqlite/postgres backends subclass JsonStore). */

package/dist/db/store.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"store.d.ts","sourceRoot":"","sources":["../../src/db/store.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAeH,OAAO,KAAK,EACV,YAAY,EACZ,UAAU,EACV,cAAc,EACd,QAAQ,EACR,cAAc,EACd,cAAc,EACf,MAAM,mBAAmB,CAAC;AAE3B,MAAM,WAAW,SAAS;IACxB,EAAE,EAAE,MAAM,CAAC;IACX,QAAQ,EAAE,MAAM,CAAC;IACjB,aAAa,EAAE,MAAM,CAAC;IACtB,aAAa,EAAE,MAAM,CAAC;IACtB,KAAK,EAAE,UAAU,EAAE,CAAC;IACpB,MAAM,EAAE,MAAM,CAAC;IACf,0BAA0B;IAC1B,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,2BAA2B;IAC3B,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,kEAAkE;IAClE,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,iDAAiD;IACjD,YAAY,CAAC,EAAE,OAAO,CAAC;IACvB,iDAAiD;IACjD,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,gDAAgD;IAChD,oBAAoB,CAAC,EAAE,MAAM,EAAE,CAAC;IAChC,uDAAuD;IACvD,iBAAiB,CAAC,EAAE,YAAY,EAAE,CAAC;IACnC,kCAAkC;IAClC,kBAAkB,CAAC,EAAE,YAAY,EAAE,CAAC;IACpC;;;OAGG;IACH,oBAAoB,CAAC,EAAE,OAAO,CAAC;IAC/B,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,mEAAmE;AACnE,MAAM,WAAW,eAAe;IAC9B,QAAQ,EAAE,cAAc,CAAC;IACzB,YAAY,EAAE,YAAY,EAAE,CAAC;IAC7B,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,+CAA+C;AAC/C,MAAM,WAAW,YAAY;IAC3B,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,2BAA2B;IAC3B,YAAY,EAAE,MAAM,CAAC;IACrB,aAAa,EAAE,MAAM,CAAC;IACtB,aAAa,EAAE,MAAM,CAAC;IACtB,8BAA8B;IAC9B,OAAO,EAAE,MAAM,CAAC;IAChB,yCAAyC;IACzC,YAAY,EAAE,MAAM,CAAC;IACrB,SAAS,EAAE,OAAO,CAAC;IACnB,SAAS,EAAE,OAAO,CAAC;IACnB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,YAAY;IAC3B;;;OAGG;IACH,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,gDAAgD;IAChD,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,iEAAiE;IACjE,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,OAAO,EAAE,MAAM,CAAC;IAChB,qCAAqC;IACrC,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,4BAA4B;IAC5B,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,YAAY;IAC3B,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,sCAAsC;IACtC,cAAc,CAAC,EAAE,MAAM,EAAE,CAAC;IAC1B,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,cAAc,CAAC;IACxB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,GAAG,EAAE,SAAS,GAAG,YAAY,CAAC;IAC9B,MAAM,EAAE,MAAM,CAAC;IACf,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,cAAc,EAAE,OAAO,CAAC;IACxB,8DAA8D;IAC9D,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,wEAAwE;IACxE,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,wDAAwD;IACxD,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,wDAAwD;IACxD,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,kDAAkD;IAClD,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,wCAAwC;IACxC,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,2CAA2C;IAC3C,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,sCAAsC;IACtC,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,wEAAwE;IACxE,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,sDAAsD;IACtD,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB;;;OAGG;IACH,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,WAAW,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACtC,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,4BAA4B;IAC5B,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,cAAc,CAAC,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,MAAM,CAAA;KAAE,CAAC;IAC/D,aAAa,CAAC,EAAE,MAAM,GAAG,KAAK,GAAG,aAAa,CAAC;IAC/C,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,gBAAgB,CAAC,EAAE,OAAO,CAAC;IAC3B,mCAAmC;IACnC,QAAQ,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAClC,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,0BAA0B;IAC1B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,kCAAkC;IAClC,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,+BAA+B;IAC/B,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,2CAA2C;IAC3C,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,0BAA0B;IAC1B,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,8CAA8C;IAC9C,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,sBAAsB;IACtB,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,gEAAgE;IAChE,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,6EAA6E;IAC7E,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,+DAA+D;IAC/D,iBAAiB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC7B;;;OAGG;IACH,cAAc,CAAC,EAAE,MAAM,EAAE,CAAC;IAC1B,iEAAiE;IACjE,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,aAAa;IAC5B,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,QAAQ,CAAC;IACf,YAAY,EAAE,MAAM,CAAC;IACrB,MAAM,EAAE,cAAc,CAAC;IACvB,OAAO,EAAE,OAAO,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,MAAM,WAAW,UAAU;IACzB,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,OAAO,CAAC;IAChB,EAAE,EAAE,OAAO,CAAC;IACZ,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,SAAS;IACxB,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,EAAE,SAAS,EAAE,CAAC;IACnB,QAAQ,EAAE,YAAY,EAAE,CAAC;IACzB,QAAQ,EAAE,YAAY,EAAE,CAAC;IACzB,QAAQ,EAAE,YAAY,EAAE,CAAC;IACzB,SAAS,EAAE,aAAa,EAAE,CAAC;IAC3B,YAAY,EAAE,UAAU,EAAE,CAAC;IAC3B,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACjC,cAAc,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;IAC/C,cAAc,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;IAC/C,aAAa,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC;IAC9C,mCAAmC;IACnC,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAA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package/dist/db/store.js

@@ -1,10 +1,257 @@
 /**
  * Durable JSON control-plane store (atomic writes).
- * Used instead of native better-sqlite3 when the environment cannot load it.
+ * Default backend. SQLite uses sql.js (no native addon) when YSK_STORE=sqlite.
  * Provides real restart-safe persistence for users/sessions/projects/audit.
  */
-import { mkdirSync, readFileSync, renameSync, writeFileSync, existsSync } from 'node:fs';
+import { closeSync, existsSync, mkdirSync, openSync, readFileSync, renameSync, statSync, unlinkSync, writeFileSync, writeSync, } from 'node:fs';
 import { dirname } from 'node:path';
+const ARRAY_COLLECTION_KEYS = [
+    'users',
+    'packages',
+    'sessions',
+    'projects',
+    'approvals',
+    'audit_events',
+    'agent_sessions',
+    'agent_messages',
+    'email_domains',
+    'ai_tasks',
+    'playbook_runs',
+    'update_jobs',
+    'dns_zones',
+    'firewall_rules',
+    'certificates',
+    'mailboxes',
+    'email_aliases',
+    'cron_jobs',
+    'nginx_sites',
+    'ftp_accounts',
+    'mysql_databases',
+    'mysql_users',
+    'postgres_databases',
+    'postgres_users',
+    'redis_instances',
+    'dns_records',
+    'file_shares',
+    'file_favorites',
+    'api_keys',
+];
+function itemKey(it) {
+    if (!it || typeof it !== 'object')
+        return undefined;
+    const id = it.id;
+    return id == null || id === '' ? undefined : String(id);
+}
+function idsOf(arr) {
+    const s = new Set();
+    for (const it of arr) {
+        const k = itemKey(it);
+        if (k)
+            s.add(k);
+    }
+    return s;
+}
+function sameJson(a, b) {
+    return JSON.stringify(a) === JSON.stringify(b);
+}
+function indexById(arr) {
+    const m = new Map();
+    for (const it of arr) {
+        const k = itemKey(it);
+        if (k)
+            m.set(k, it);
+    }
+    return m;
+}
+function rowUpdatedAt(row) {
+    if (!row || typeof row !== 'object')
+        return 0;
+    const ts = Date.parse(String(row.updated_at ?? ''));
+    return Number.isFinite(ts) ? ts : 0;
+}
+/** Never clobber these when this process did not change them (2FA / password). */
+export const MERGE_PROTECT_FIELDS = [
+    'totp_secret',
+    'totp_enabled',
+    'totp_last_step',
+    'totp_recovery_hashes',
+    'password_hash',
+    'password_salt',
+];
+function mergeConflictRow(ours, disk, baseline) {
+    const oursObj = ours && typeof ours === 'object' ? ours : {};
+    const diskObj = disk && typeof disk === 'object' ? disk : {};
+    const baseObj = baseline && typeof baseline === 'object' ? baseline : {};
+    const oursTs = rowUpdatedAt(ours);
+    const diskTs = rowUpdatedAt(disk);
+    const newer = diskTs > oursTs ? diskObj : oursObj;
+    const older = newer === diskObj ? oursObj : diskObj;
+    const merged = { ...older, ...newer };
+    for (const f of MERGE_PROTECT_FIELDS) {
+        const oursChanged = !sameJson(oursObj[f], baseObj[f]);
+        const diskChanged = !sameJson(diskObj[f], baseObj[f]);
+        const src = oursChanged && !diskChanged
+            ? oursObj
+            : !oursChanged && diskChanged
+                ? diskObj
+                : oursChanged && diskChanged
+                    ? diskTs > oursTs
+                        ? diskObj
+                        : oursObj
+                    : null;
+        if (!src)
+            continue;
+        if (src[f] === undefined)
+            delete merged[f];
+        else
+            merged[f] = src[f];
+    }
+    return merged;
+}
+/**
+ * Three-way merge: keep our edits/deletes, pick up rows another process inserted.
+ * Same id: unchanged local row takes disk; both-changed keeps totp_/password_ if we did not touch them.
+ */
+export function mergeIdArray(baseline, ours, disk) {
+    const deleted = new Set([...idsOf(baseline)].filter((id) => !idsOf(ours).has(id)));
+    const baseBy = indexById(baseline);
+    const diskBy = indexById(disk);
+    const seen = new Set();
+    const out = [];
+    for (const it of ours) {
+        const k = itemKey(it);
+        if (!k) {
+            out.push(it);
+            continue;
+        }
+        seen.add(k);
+        const b = baseBy.get(k);
+        const d = diskBy.get(k);
+        if (!d) {
+            // Disk dropped a row we still hold. If we knew it (in baseline),
+            // another process deleted it — do not resurrect. Keep only our inserts.
+            if (!b)
+                out.push(it);
+            continue;
+        }
+        if (sameJson(it, b))
+            out.push(d);
+        else if (sameJson(d, b))
+            out.push(it);
+        else
+            out.push(mergeConflictRow(it, d, b));
+    }
+    for (const it of disk) {
+        const k = itemKey(it);
+        if (!k || deleted.has(k) || seen.has(k))
+            continue;
+        seen.add(k);
+        out.push(it);
+    }
+    return out;
+}
+export function hydrateStoreData(raw) {
+    const src = raw && typeof raw === 'object' ? raw : {};
+    const data = { ...structuredClone(EMPTY), ...src };
+    for (const k of ARRAY_COLLECTION_KEYS) {
+        const v = data[k];
+        data[k] = Array.isArray(v) ? v : [];
+    }
+    data.settings = data.settings && typeof data.settings === 'object' ? data.settings : {};
+    data.backup_exclusions = Array.isArray(data.backup_exclusions) ? data.backup_exclusions : [];
+    data.version = typeof data.version === 'number' && Number.isFinite(data.version) ? data.version : EMPTY.version;
+    return data;
+}
+/** Three-way settings: unchanged local keys take disk (WebDAV / last_backup_run). */
+export function mergeSettingsMap(baseline, ours, disk) {
+    const keys = new Set([...Object.keys(baseline), ...Object.keys(ours), ...Object.keys(disk)]);
+    const out = {};
+    for (const k of keys) {
+        const b = Object.prototype.hasOwnProperty.call(baseline, k) ? baseline[k] : undefined;
+        const o = Object.prototype.hasOwnProperty.call(ours, k) ? ours[k] : undefined;
+        const d = Object.prototype.hasOwnProperty.call(disk, k) ? disk[k] : undefined;
+        const oursDeleted = b !== undefined && o === undefined;
+        if (oursDeleted)
+            continue;
+        if (o === undefined) {
+            if (d !== undefined)
+                out[k] = d;
+            continue;
+        }
+        if (sameJson(o, b)) {
+            if (d !== undefined)
+                out[k] = d;
+            else
+                out[k] = o;
+            continue;
+        }
+        if (d === undefined || sameJson(d, b)) {
+            out[k] = o;
+            continue;
+        }
+        out[k] = o;
+    }
+    return out;
+}
+export function mergeStoreData(baseline, ours, disk) {
+    const out = hydrateStoreData(ours);
+    for (const k of ARRAY_COLLECTION_KEYS) {
+        out[k] = mergeIdArray(baseline[k] ?? [], ours[k] ?? [], disk[k] ?? []);
+    }
+    out.settings = mergeSettingsMap(baseline.settings ?? {}, ours.settings ?? {}, disk.settings ?? {});
+    const exclChanged = JSON.stringify(ours.backup_exclusions ?? []) !== JSON.stringify(baseline.backup_exclusions ?? []);
+    out.backup_exclusions = exclChanged ? ours.backup_exclusions ?? [] : disk.backup_exclusions ?? [];
+    const remoteChanged = JSON.stringify(ours.backup_remote) !== JSON.stringify(baseline.backup_remote);
+    out.backup_remote = remoteChanged ? ours.backup_remote : disk.backup_remote;
+    const rbacChanged = JSON.stringify(ours.rbac_policies) !== JSON.stringify(baseline.rbac_policies);
+    out.rbac_policies = rbacChanged ? ours.rbac_policies : disk.rbac_policies;
+    out.version = Math.max(ours.version ?? 0, disk.version ?? 0, EMPTY.version);
+    return out;
+}
+function withStoreLock(storePath, fn) {
+    const lockPath = `${storePath}.lock`;
+    const start = Date.now();
+    let fd;
+    while (fd == null) {
+        try {
+            fd = openSync(lockPath, 'wx');
+            writeSync(fd, `${process.pid}\n${Date.now()}\n`);
+        }
+        catch {
+            try {
+                if (existsSync(lockPath) && Date.now() - statSync(lockPath).mtimeMs > 30_000) {
+                    unlinkSync(lockPath);
+                    continue;
+                }
+            }
+            catch {
+                /* retry */
+            }
+            if (Date.now() - start > 15_000) {
+                throw new Error(`ysk store lock timeout: ${lockPath}`);
+            }
+            const wait = new Int32Array(new SharedArrayBuffer(4));
+            Atomics.wait(wait, 0, 0, 25);
+        }
+    }
+    try {
+        fn();
+    }
+    finally {
+        try {
+            closeSync(fd);
+        }
+        catch {
+            /* ignore */
+        }
+        try {
+            unlinkSync(lockPath);
+        }
+        catch {
+            /* ignore */
+        }
+    }
+}
 const EMPTY = {
     version: 3,
     users: [],
@@ -40,58 +287,57 @@ const EMPTY = {
 };
 export class JsonStore {
     data;
+    baseline;
+    loadedMtime;
     path;
     constructor(path) {
         this.path = path;
         mkdirSync(dirname(path), { recursive: true });
         if (existsSync(path)) {
-            this.data = { ...EMPTY, ...JSON.parse(readFileSync(path, 'utf8')) };
-            // ensure arrays / maps
-            this.data.users = this.data.users ?? [];
-            this.data.packages = this.data.packages ?? [];
-            this.data.sessions = this.data.sessions ?? [];
-            this.data.projects = this.data.projects ?? [];
-            this.data.backup_exclusions = this.data.backup_exclusions ?? [];
-            this.data.approvals = this.data.approvals ?? [];
-            this.data.audit_events = this.data.audit_events ?? [];
-            this.data.settings = this.data.settings ?? {};
-            this.data.agent_sessions = this.data.agent_sessions ?? [];
-            this.data.agent_messages = this.data.agent_messages ?? [];
-            this.data.email_domains = this.data.email_domains ?? [];
-            this.data.ai_tasks = this.data.ai_tasks ?? [];
-            this.data.playbook_runs = this.data.playbook_runs ?? [];
-            this.data.update_jobs = this.data.update_jobs ?? [];
-            this.data.dns_zones = this.data.dns_zones ?? [];
-            this.data.firewall_rules = this.data.firewall_rules ?? [];
-            this.data.certificates = this.data.certificates ?? [];
-            this.data.mailboxes = this.data.mailboxes ?? [];
-            this.data.email_aliases = this.data.email_aliases ?? [];
-            this.data.cron_jobs = this.data.cron_jobs ?? [];
-            this.data.nginx_sites = this.data.nginx_sites ?? [];
-            this.data.ftp_accounts = this.data.ftp_accounts ?? [];
-            this.data.mysql_databases = this.data.mysql_databases ?? [];
-            this.data.mysql_users = this.data.mysql_users ?? [];
-            this.data.postgres_databases = this.data.postgres_databases ?? [];
-            this.data.postgres_users = this.data.postgres_users ?? [];
-            this.data.redis_instances = this.data.redis_instances ?? [];
-            this.data.dns_records = this.data.dns_records ?? [];
-            this.data.file_shares = this.data.file_shares ?? [];
-            this.data.file_favorites = this.data.file_favorites ?? [];
-            this.data.api_keys = this.data.api_keys ?? [];
-            this.data.version = this.data.version ?? EMPTY.version;
+            this.data = hydrateStoreData(JSON.parse(readFileSync(path, 'utf8')));
+            this.loadedMtime = statSync(path).mtimeMs;
         }
         else {
             this.data = structuredClone(EMPTY);
+            this.loadedMtime = 0;
+            this.baseline = structuredClone(this.data);
             this.persist();
+            return;
         }
+        this.baseline = structuredClone(this.data);
     }
     get snapshot() {
         return this.data;
     }
-    persist() {
-        const tmp = `${this.path}.${process.pid}.tmp`;
-        writeFileSync(tmp, JSON.stringify(this.data, null, 2), 'utf8');
-        renameSync(tmp, this.path);
+    /** Pull in rows another process wrote. Safe to call before mutating. */
+    reloadIfStale() {
+        if (!existsSync(this.path))
+            return;
+        if (statSync(this.path).mtimeMs <= this.loadedMtime)
+            return;
+        withStoreLock(this.path, () => this.mergeFromDiskUnlocked());
+    }
+    mergeFromDiskUnlocked() {
+        if (!existsSync(this.path))
+            return;
+        const mtime = statSync(this.path).mtimeMs;
+        if (mtime <= this.loadedMtime)
+            return;
+        const disk = hydrateStoreData(JSON.parse(readFileSync(this.path, 'utf8')));
+        this.data = mergeStoreData(this.baseline, this.data, disk);
+        this.loadedMtime = mtime;
+        this.baseline = structuredClone(disk);
+    }
+    persist(opts) {
+        withStoreLock(this.path, () => {
+            if (!opts?.replace)
+                this.mergeFromDiskUnlocked();
+            const tmp = `${this.path}.${process.pid}.tmp`;
+            writeFileSync(tmp, JSON.stringify(this.data, null, 2), 'utf8');
+            renameSync(tmp, this.path);
+            this.loadedMtime = statSync(this.path).mtimeMs;
+            this.baseline = structuredClone(this.data);
+        });
     }
     close() {
         this.persist();