youmd 0.5.0 → 0.6.1

package/dist/lib/skill-catalog.js.map

@@ -1 +1 @@
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package/dist/lib/skill-renderer.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"skill-renderer.d.ts","sourceRoot":"","sources":["../../src/lib/skill-renderer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAOH,MAAM,WAAW,YAAY;IAC3B,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAChC,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACpC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACnC,YAAY,EAAE,MAAM,CAAC;IACrB,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,IAAI,YAAY,CAiG/C;AAoID;;;;;;;;;GASG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,YAAY,GAAG,MAAM,CAqB3E;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,YAAY,GAAG,MAAM,CAOjF;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE,CAW9D;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,YAAY,GAAG;IAC7E,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,EAAE,CAAC;CACnB,CAiBA"}
+{"version":3,"file":"skill-renderer.d.ts","sourceRoot":"","sources":["../../src/lib/skill-renderer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAOH,MAAM,WAAW,YAAY;IAC3B,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAChC,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACpC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IACnC,YAAY,EAAE,MAAM,CAAC;IACrB,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,IAAI,YAAY,CAiG/C;AAiJD;;;;;;;;;GASG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,YAAY,GAAG,MAAM,CAqB3E;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,YAAY,GAAG,MAAM,CAOjF;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE,CAW9D;AAED;;;GAGG;AACH,wBAAgB,sBAAsB,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,CAAC,EAAE,YAAY,GAAG;IAC7E,KAAK,EAAE,MAAM,CAAC;IACd,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,EAAE,CAAC;CACnB,CAiBA"}

package/dist/lib/skill-renderer.js

@@ -285,6 +285,24 @@ function extractFromYouJson(youJson, data) {
                 data.directives[key] = val;
         }
     }
+    // Nested format: agent_directives (underscore convention from compile.ts)
+    const agentDir = youJson.agent_directives;
+    if (agentDir && !data.directives.agent) {
+        const parts = [];
+        if (agentDir.communication_style)
+            parts.push(`Communication Style: ${agentDir.communication_style}`);
+        const negPrompts = agentDir.negative_prompts;
+        if (negPrompts?.length)
+            parts.push(`Never: ${negPrompts.join(". ")}`);
+        if (agentDir.default_stack)
+            parts.push(`Default Stack: ${agentDir.default_stack}`);
+        if (agentDir.decision_framework)
+            parts.push(`Decision Framework: ${agentDir.decision_framework}`);
+        if (agentDir.current_goal)
+            parts.push(`Current Goal: ${agentDir.current_goal}`);
+        if (parts.length > 0)
+            data.directives.agent = parts.join("\n");
+    }
 }
 /**
  * Resolve a dot-path variable against identity data.

package/dist/lib/skill-renderer.js.map

@@ -1 +1 @@
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package/dist/lib/skills.d.ts

@@ -83,6 +83,10 @@ export declare function syncAffectedSkills(changedFields: string[]): {
     errors: string[];
 };
 export type AgentTarget = "claude" | "cursor" | "codex";
+export type InitProjectMode = "auto" | "additive" | "zero-touch" | "scaffold";
+export interface InitProjectOptions {
+    mode?: InitProjectMode;
+}
 /**
  * Link installed skills to an agent's directory.
  *
@@ -96,11 +100,12 @@ export declare function linkToAgent(target: AgentTarget): {
     error?: string;
 };
 /**
- * Initialize a project with skills: install core skills, generate CLAUDE.md,
- * scaffold project-context/, and link to .claude/skills/.
+ * Initialize a project with additive agent bootstrap files, scaffolded
+ * project-context docs, a generated .you layer, and host-linked skills.
  */
-export declare function initProject(): {
+export declare function initProject(options?: InitProjectOptions): {
     ok: boolean;
+    mode: Exclude<InitProjectMode, "auto">;
     steps: Array<{
         name: string;
         ok: boolean;

package/dist/lib/skills.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"skills.d.ts","sourceRoot":"","sources":["../../src/lib/skills.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAmBH,OAAO,EAAyC,sBAAsB,EAAgB,MAAM,kBAAkB,CAAC;AAU/G;;GAEG;AACH,wBAAgB,WAAW,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAErD;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,CAEtD;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,SAAS,EAAE,MAAM,GAAG;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAA;CAAE,GAAG,IAAI,CAW9G;AAID;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAyChE;AAED;;;;;GAKG;AACH,wBAAsB,uBAAuB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CA8CpF;AAID;;;GAGG;AACH,wBAAgB,YAAY,CAAC,SAAS,EAAE,MAAM,GAAG;IAAE,EAAE,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAsC/E;AAED;;GAEG;AACH,wBAAsB,iBAAiB,CAAC,SAAS,EAAE,MAAM,GAAG,OAAO,CAAC;IAAE,EAAE,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAAC,CAiCnG;AAED;;GAEG;AACH,wBAAgB,WAAW,CAAC,SAAS,EAAE,MAAM,GAAG;IAAE,EAAE,EAAE,OAAO,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CA0B9E;AAID;;;GAGG;AACH,wBAAgB,QAAQ,CAAC,SAAS,EAAE,MAAM,GAAG;IAAE,EAAE,EAAE,OAAO,CAAC;IAAC,OAAO,CAAC,EAAE,MAAM,CAAC;IAAC,SAAS,CAAC,EAAE,UAAU,CAAC,OAAO,sBAAsB,CAAC,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CAuCpJ;AAID;;GAEG;AACH,wBAAgB,aAAa,IAAI;IAAE,MAAM,EAAE,MAAM,EAAE,CAAC;IAAC,MAAM,EAAE,MAAM,EAAE,CAAA;CAAE,CA0BtE;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,aAAa,EAAE,MAAM,EAAE,GAAG;IAAE,MAAM,EAAE,MAAM,EAAE,CAAC;IAAC,MAAM,EAAE,MAAM,EAAE,CAAA;CAAE,CA4BlG;AAID,MAAM,MAAM,WAAW,GAAG,QAAQ,GAAG,QAAQ,GAAG,OAAO,CAAC;AACxD,MAAM,MAAM,eAAe,GAAG,MAAM,GAAG,UAAU,GAAG,YAAY,GAAG,UAAU,CAAC;AAE9E,MAAM,WAAW,kBAAkB;IACjC,IAAI,CAAC,EAAE,eAAe,CAAC;CACxB;AAED;;;;;;GAMG;AACH,wBAAgB,WAAW,CAAC,MAAM,EAAE,WAAW,GAAG;IAAE,EAAE,EAAE,OAAO,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAA;CAAE,CA6D/F;AAmBD;;;GAGG;AACH,wBAAgB,WAAW,CAAC,OAAO,GAAE,kBAAuB,GAAG;IAC7D,EAAE,EAAE,OAAO,CAAC;IACZ,IAAI,EAAE,OAAO,CAAC,eAAe,EAAE,MAAM,CAAC,CAAC;IACvC,KAAK,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,EAAE,EAAE,OAAO,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;CAC9D,CA8FA;AAqUD,UAAU,YAAY;IACpB,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE;QACrB,IAAI,EAAE,MAAM,CAAC;QACb,QAAQ,EAAE,MAAM,CAAC;QACjB,QAAQ,EAAE,MAAM,CAAC;QACjB,aAAa,CAAC,EAAE,MAAM,CAAC;KACxB,CAAC,CAAC;IACH,cAAc,EAAE,MAAM,CAAC,MAAM,EAAE;QAAE,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;IACvD,WAAW,EAAE,MAAM,CAAC;CACrB;AAoBD,wBAAgB,eAAe,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAG,SAAS,GAAG,QAAQ,GAAG,IAAI,CA6B5F;AAED,wBAAgB,UAAU,IAAI,YAAY,CAEzC"}

package/dist/lib/skills.js

@@ -174,8 +174,11 @@ async function resolveSkillSourceAsync(source) {
         }
         return null;
     }
-    // Direct HTTPS URL to raw markdown
-    if (source.startsWith("https://") || source.startsWith("http://")) {
+    // Direct HTTPS URL to raw markdown.
+    // Cycle 53: was previously accepting http:// as well. Skill installs are
+    // executable content — fetching them over insecure HTTP allows MITM
+    // injection of malicious skill code. HTTPS-only.
+    if (source.startsWith("https://")) {
         try {
             const res = await fetch(source);
             if (res.ok) {
@@ -220,7 +223,7 @@ function installSkill(skillName) {
     (0, skill_catalog_1.setSkillInstalled)(catalog, entry.name, true);
     // Track metrics
     trackSkillEvent(entry.name, "install");
-    // Sync to Convex (non-blocking)
+    // Sync to Convex (non-blocking, warn on failure)
     syncInstallToRemote(entry);
     return { ok: true };
 }
@@ -268,10 +271,11 @@ function removeSkill(skillName) {
     }
     (0, skill_catalog_1.setSkillInstalled)(catalog, entry.name, false);
     trackSkillEvent(entry.name, "remove");
-    // Sync removal to Convex (non-blocking, log failures)
+    // Sync removal to Convex (non-blocking, warn on failure)
     if ((0, config_2.isAuthenticated)()) {
         (0, api_1.removeSkillInstall)(entry.name).catch((err) => {
-            // Non-fatal: remote sync failed but local removal succeeded
+            const chalk = require("chalk");
+            console.log(chalk.dim(`  sync: ${entry.name} remote removal sync failed (non-fatal)`));
             if (process.env.DEBUG)
                 console.error(`[skill sync] remove failed: ${err}`);
         });
@@ -306,9 +310,11 @@ function useSkill(skillName) {
     const skillDir = getSkillDir(entry.name);
     fs.writeFileSync(path.join(skillDir, "RENDERED.md"), rendered);
     trackSkillEvent(entry.name, "use");
-    // Sync usage to Convex (non-blocking, log failures)
+    // Sync usage to Convex (non-blocking, warn on failure)
     if ((0, config_2.isAuthenticated)()) {
         (0, api_1.trackSkillUsage)(entry.name).catch((err) => {
+            const chalk = require("chalk");
+            console.log(chalk.dim(`  sync: usage tracking failed for ${entry.name} (non-fatal)`));
             if (process.env.DEBUG)
                 console.error(`[skill sync] usage tracking failed: ${err}`);
         });
@@ -441,81 +447,114 @@ function getRenderedContent(skillName) {
     return (0, skill_renderer_1.renderSkillTemplate)(skillFile.content);
 }
 // ─── Init Project (Compound Command) ─────────────────────────────────
+const BOOTSTRAP_START = "<!-- youmd:bootstrap:start -->";
+const BOOTSTRAP_END = "<!-- youmd:bootstrap:end -->";
 /**
- * Initialize a project with skills: install core skills, generate CLAUDE.md,
- * scaffold project-context/, and link to .claude/skills/.
+ * Initialize a project with additive agent bootstrap files, scaffolded
+ * project-context docs, a generated .you layer, and host-linked skills.
  */
-function initProject() {
+function initProject(options = {}) {
     const steps = [];
     const project = (0, config_1.detectProjectContext)();
     const cwd = process.cwd();
-    // Step 1: Install core skills
+    const identity = (0, skill_renderer_1.loadIdentityData)();
+    const projectName = project?.name || path.basename(cwd);
+    const agentsPath = path.join(cwd, "AGENTS.md");
+    const claudePath = path.join(cwd, "CLAUDE.md");
+    const projectContextDir = path.join(cwd, "project-context");
+    const youDir = path.join(cwd, ".you");
+    const requestedMode = options.mode ?? "auto";
+    const resolvedMode = resolveInitProjectMode({
+        mode: requestedMode,
+        hasAgentFile: fs.existsSync(agentsPath),
+        hasClaudeFile: fs.existsSync(claudePath),
+        hasProjectContext: fs.existsSync(projectContextDir),
+    });
+    // Step 1: Install core skills that power the generated layer
     for (const name of ["claude-md-generator", "project-context-init"]) {
         const result = installSkill(name);
         steps.push({
             name: `install ${name}`,
             ok: result.ok,
-            detail: result.error,
+            detail: result.ok ? "ready" : result.error,
         });
     }
-    // Step 2: Generate or merge CLAUDE.md
-    const identity = (0, skill_renderer_1.loadIdentityData)();
-    const projectName = project?.name || path.basename(cwd);
-    const claudeMdPath = path.join(cwd, "CLAUDE.md");
-    if (fs.existsSync(claudeMdPath)) {
-        // Merge: append identity section if not already present
-        const existing = fs.readFileSync(claudeMdPath, "utf-8");
-        const IDENTITY_MARKER = "<!-- youmd:identity -->";
-        if (existing.includes(IDENTITY_MARKER)) {
-            steps.push({ name: "CLAUDE.md", ok: true, detail: "identity section already present" });
-        }
-        else {
-            const identitySection = generateIdentitySection(identity);
-            if (identitySection) {
-                fs.writeFileSync(claudeMdPath, existing.trimEnd() + "\n\n" + identitySection);
-                steps.push({ name: "CLAUDE.md", ok: true, detail: "identity section appended" });
-            }
-            else {
-                steps.push({ name: "CLAUDE.md", ok: true, detail: "exists, no identity data to add" });
-            }
-        }
+    // Step 2: Create/update the generated .you layer
+    const youResult = scaffoldYouLayer(youDir, identity, projectName);
+    steps.push({
+        name: ".you/",
+        ok: true,
+        detail: youResult,
+    });
+    // Step 3: Scaffold or update first-class entrypoints
+    if (resolvedMode === "zero-touch") {
+        steps.push({
+            name: "top-level agent files",
+            ok: true,
+            detail: "zero-touch mode — left AGENTS.md and CLAUDE.md unchanged",
+        });
     }
     else {
-        const claudeMd = generateClaudeMd(identity, projectName);
-        fs.writeFileSync(claudeMdPath, claudeMd);
-        steps.push({ name: "CLAUDE.md", ok: true, detail: "generated" });
+        const agentResult = ensureAgentInstructionFiles({
+            cwd,
+            projectName,
+            identity,
+        });
+        steps.push({
+            name: "agent instruction files",
+            ok: true,
+            detail: agentResult,
+        });
     }
-    // Step 3: Scaffold project-context/
-    const pcDir = path.join(cwd, "project-context");
-    if (fs.existsSync(pcDir)) {
-        steps.push({ name: "project-context/", ok: true, detail: "already exists, skipped" });
+    // Step 4: Scaffold the canonical project-context/ directory
+    if (resolvedMode === "zero-touch") {
+        steps.push({
+            name: "project-context/",
+            ok: true,
+            detail: "zero-touch mode — left canonical project-context untouched",
+        });
     }
     else {
-        scaffoldProjectContext(pcDir, identity, project?.name || path.basename(cwd));
-        steps.push({ name: "project-context/", ok: true, detail: "scaffolded" });
+        const scaffolded = scaffoldProjectContext(projectContextDir, identity, projectName);
+        steps.push({
+            name: "project-context/",
+            ok: true,
+            detail: scaffolded,
+        });
     }
-    // Step 4: Link to .claude/skills/
-    const linkResult = linkToAgent("claude");
-    steps.push({
-        name: "link .claude/skills/youmd/",
-        ok: linkResult.ok,
-        detail: linkResult.error || linkResult.path,
-    });
-    // Step 5: Also link to Cursor if .cursor/ exists
-    if (fs.existsSync(path.join(cwd, ".cursor"))) {
-        const cursorResult = linkToAgent("cursor");
+    // Step 5: Link rendered skills into host-specific discovery paths
+    const linkTargets = ["claude"];
+    if (fs.existsSync(path.join(cwd, ".cursor")))
+        linkTargets.push("cursor");
+    if (fs.existsSync(path.join(cwd, ".codex")))
+        linkTargets.push("codex");
+    for (const target of linkTargets) {
+        const result = linkToAgent(target);
+        const label = target === "claude"
+            ? "link .claude/skills/youmd/"
+            : target === "cursor"
+                ? "link .cursor/rules/youmd.md"
+                : "link .codex/skills/youmd/";
         steps.push({
-            name: "link .cursor/rules/youmd.md",
-            ok: cursorResult.ok,
-            detail: cursorResult.error || cursorResult.path,
+            name: label,
+            ok: result.ok,
+            detail: result.error || result.path,
         });
     }
-    return { ok: steps.every((s) => s.ok), steps };
+    return { ok: steps.every((s) => s.ok), mode: resolvedMode, steps };
+}
+function resolveInitProjectMode(args) {
+    if (args.mode !== "auto")
+        return args.mode;
+    if (!args.hasAgentFile && !args.hasClaudeFile && !args.hasProjectContext) {
+        return "scaffold";
+    }
+    return "additive";
 }
-function generateClaudeMd(identity, projectName) {
+function generateAgentMd(identity, projectName) {
     const parts = [];
-    parts.push(`# ${projectName} — Coding Agent Operating Manual\n`);
-    parts.push(`> Generated by You.md skill system. Powered by your identity context.\n`);
+    parts.push(`# ${projectName} — Agent Operating Manual\n`);
+    parts.push(`> Bootstrapped by You.md. This is the repo-visible instruction layer agents should read first.\n`);
     if (identity.profile.about) {
         parts.push(`\n## Who You're Working With\n\n${identity.profile.about}\n`);
     }
@@ -528,6 +567,11 @@ function generateClaudeMd(identity, projectName) {
     if (identity.voice.overall) {
         parts.push(`\n## Voice & Communication\n\n${identity.voice.overall}\n`);
     }
+    parts.push(`\n## Workflow\n`);
+    parts.push(`- Read \`project-context/CURRENT_STATE.md\` and \`project-context/feature-requests-active.md\` before substantial work.\n`);
+    parts.push(`- Track multi-part user asks in \`project-context/feature-requests-active.md\` rather than silently handling only part of the request.\n`);
+    parts.push(`- Treat updates to \`project-context/TODO.md\`, \`FEATURES.md\`, \`CHANGELOG.md\`, \`feature-requests-active.md\`, and \`PROMPTS.md\` as part of "done" after meaningful development sessions.\n`);
+    parts.push(`- Read \`.you/AGENT.md\`, \`.you/STACK-MAP.md\`, and \`.you/project-context/\` for additive You.md-generated context.\n`);
     parts.push(`\n## Project\n\n- **Name:** ${projectName}\n`);
     // Detect stack
     const cwd = process.cwd();
@@ -557,37 +601,86 @@ function generateClaudeMd(identity, projectName) {
     }
     return parts.join("\n");
 }
+function generateClaudeMd(projectName) {
+    return [
+        `# ${projectName} — Claude Entry Point`,
+        "",
+        "> This repo uses `AGENTS.md` as the canonical human-owned instruction layer.",
+        "> Read `AGENTS.md`, `project-context/`, and `.you/` before substantial work.",
+        "",
+    ].join("\n");
+}
 /**
- * Generate an identity section to append to an existing CLAUDE.md.
- * Returns null if no identity data is available.
+ * Generate an additive managed bootstrap block for existing top-level
+ * instruction files without rewriting user-owned content.
  */
-function generateIdentitySection(identity) {
-    const sections = [];
-    if (identity.profile.about) {
-        sections.push(`## Who You're Working With\n\n${identity.profile.about}`);
-    }
-    if (identity.preferences.agent) {
-        sections.push(`## Agent Preferences\n\n${identity.preferences.agent}`);
-    }
-    if (identity.directives.agent) {
-        sections.push(`## Directives\n\n${identity.directives.agent}`);
-    }
-    if (identity.voice.overall) {
-        sections.push(`## Voice & Communication\n\n${identity.voice.overall}`);
-    }
-    if (sections.length === 0)
-        return null;
+function generateBootstrapBlock(target, includeCompanion) {
+    const companionLine = includeCompanion && target === "CLAUDE.md"
+        ? "- Also read `AGENTS.md` for repo-native operating instructions.\n"
+        : includeCompanion && target === "AGENTS.md"
+            ? "- Keep `CLAUDE.md` as the Claude-specific entrypoint if this repo uses it.\n"
+            : "";
     return [
-        "<!-- youmd:identity -->",
-        "<!-- Auto-generated by You.md skill system. Re-run `youmd skill init-project` to update. -->",
+        BOOTSTRAP_START,
+        `<!-- Auto-generated by You.md. Re-run \`youmd skill init-project\` to refresh this managed block. -->`,
         "",
-        "---",
+        "## You.md Bootstrap",
         "",
-        "# You.md Identity Context",
+        "- Read `project-context/CURRENT_STATE.md` and `project-context/feature-requests-active.md` before substantial work.",
+        "- Track multi-part asks in `project-context/feature-requests-active.md` rather than silently handling only one part.",
+        "- Treat updates to `project-context/TODO.md`, `FEATURES.md`, `CHANGELOG.md`, `feature-requests-active.md`, and `PROMPTS.md` as part of done after meaningful development sessions.",
+        "- Read `.you/AGENT.md`, `.you/STACK-MAP.md`, and `.you/project-context/` for additive You.md-generated context.",
+        companionLine.trimEnd(),
         "",
-        ...sections,
+        BOOTSTRAP_END,
         "",
-    ].join("\n");
+    ]
+        .filter(Boolean)
+        .join("\n");
+}
+function upsertManagedBootstrap(existing, target, includeCompanion) {
+    const block = generateBootstrapBlock(target, includeCompanion).trim();
+    const pattern = new RegExp(`${escapeRegex(BOOTSTRAP_START)}[\\s\\S]*?${escapeRegex(BOOTSTRAP_END)}`, "m");
+    if (pattern.test(existing)) {
+        const replaced = existing.replace(pattern, block);
+        return {
+            content: replaced === existing ? existing : replaced,
+            status: replaced === existing ? "unchanged" : "updated",
+        };
+    }
+    const trimmed = existing.trimEnd();
+    return {
+        content: trimmed ? `${trimmed}\n\n${block}\n` : `${block}\n`,
+        status: "added",
+    };
+}
+function ensureAgentInstructionFiles(args) {
+    const agentsPath = path.join(args.cwd, "AGENTS.md");
+    const claudePath = path.join(args.cwd, "CLAUDE.md");
+    const hasAgents = fs.existsSync(agentsPath);
+    const hasClaude = fs.existsSync(claudePath);
+    const notes = [];
+    if (!hasAgents) {
+        fs.writeFileSync(agentsPath, generateAgentMd(args.identity, args.projectName));
+        notes.push("created AGENTS.md");
+    }
+    else {
+        const existing = fs.readFileSync(agentsPath, "utf-8");
+        const update = upsertManagedBootstrap(existing, "AGENTS.md", hasClaude);
+        fs.writeFileSync(agentsPath, update.content);
+        notes.push(`${update.status} AGENTS.md bootstrap`);
+    }
+    if (!hasClaude) {
+        fs.writeFileSync(claudePath, `${generateClaudeMd(args.projectName)}\n${generateBootstrapBlock("CLAUDE.md", true)}`);
+        notes.push("created CLAUDE.md");
+    }
+    else {
+        const existing = fs.readFileSync(claudePath, "utf-8");
+        const update = upsertManagedBootstrap(existing, "CLAUDE.md", true);
+        fs.writeFileSync(claudePath, update.content);
+        notes.push(`${update.status} CLAUDE.md bootstrap`);
+    }
+    return notes.join("; ");
 }
 function scaffoldProjectContext(dir, identity, projectName) {
     fs.mkdirSync(dir, { recursive: true });
@@ -602,13 +695,116 @@ function scaffoldProjectContext(dir, identity, projectName) {
         "CURRENT_STATE.md": `# ${projectName} — Current State\n\n> Updated: ${date}\n\n## Deployed\n\n## Known Issues\n\n## Next Priorities\n`,
         "STYLE_GUIDE.md": `# ${projectName} — Style Guide\n\n> Updated: ${date}\n\n(describe design system, colors, typography)\n`,
         "feature-requests-active.md": `# ${projectName} — Active Feature Requests\n\n> Updated: ${date}\n\n| Request | Status | Source | Notes |\n|---|---|---|---|\n`,
+        "PROMPTS.md": `# ${projectName} — Prompt Archive\n\n> Updated: ${date}\n> Total sessions: 0\n> Total prompts: 0\n\n## Notes\n\nAppend user messages here after each development session so future agents can search exact wording.\n`,
     };
+    const created = [];
+    const skipped = [];
     for (const [filename, content] of Object.entries(files)) {
         const filePath = path.join(dir, filename);
         if (!fs.existsSync(filePath)) {
             fs.writeFileSync(filePath, content);
+            created.push(filename);
+        }
+        else {
+            skipped.push(filename);
         }
     }
+    if (created.length === 0) {
+        return `all canonical files already present (${skipped.length} checked)`;
+    }
+    return `created ${created.length} file(s): ${created.join(", ")}`;
+}
+function scaffoldYouLayer(dir, identity, projectName) {
+    const projectContextDir = path.join(dir, "project-context");
+    fs.mkdirSync(projectContextDir, { recursive: true });
+    const writes = [
+        [path.join(dir, "AGENT.md"), generateYouAgentMd(identity, projectName)],
+        [path.join(dir, "STACK-MAP.md"), generateStackMap(projectName)],
+        [
+            path.join(projectContextDir, "README.md"),
+            generateYouProjectContextReadme(projectName),
+        ],
+    ];
+    const created = [];
+    const updated = [];
+    for (const [filePath, content] of writes) {
+        const existed = fs.existsSync(filePath);
+        fs.writeFileSync(filePath, content);
+        (existed ? updated : created).push(path.relative(dir, filePath));
+    }
+    const parts = [];
+    if (created.length > 0)
+        parts.push(`created ${created.join(", ")}`);
+    if (updated.length > 0)
+        parts.push(`updated ${updated.join(", ")}`);
+    return parts.join("; ");
+}
+function generateYouAgentMd(identity, projectName) {
+    const lines = [
+        `# You.md Generated Agent Context`,
+        "",
+        `> This is the You.md-owned additive layer for \`${projectName}\`. Top-level repo files stay user-owned.`,
+        "",
+        "## Purpose",
+        "",
+        "- Provide additive identity and workflow context without overwriting human-maintained docs.",
+        "- Keep cross-agent expectations consistent across Claude, Codex, Cursor, and similar tools.",
+        "",
+    ];
+    if (identity.profile.about) {
+        lines.push("## Identity", "", identity.profile.about, "");
+    }
+    if (identity.preferences.agent) {
+        lines.push("## Agent Preferences", "", identity.preferences.agent, "");
+    }
+    if (identity.directives.agent) {
+        lines.push("## Directives", "", identity.directives.agent, "");
+    }
+    if (identity.voice.overall) {
+        lines.push("## Voice", "", identity.voice.overall, "");
+    }
+    lines.push("## Operating Expectations", "");
+    lines.push("- Read the repo-visible instruction file(s) first.");
+    lines.push("- Treat `project-context/` as the canonical shared working context.");
+    lines.push("- Use this `.you/` layer as additive guidance and generated metadata, not as a replacement for repo-owned docs.");
+    lines.push("");
+    return lines.join("\n");
+}
+function generateStackMap(projectName) {
+    return [
+        "# You.md Stack Map",
+        "",
+        `> Generated for \`${projectName}\`. This file explains what You.md owns versus what the repo/user owns.`,
+        "",
+        "## Ownership",
+        "",
+        "- `AGENTS.md` / `CLAUDE.md`: human-owned entrypoints with a managed additive You.md bootstrap block.",
+        "- `project-context/`: canonical shared repo context. You.md only fills missing files unless a human explicitly asks for deeper changes.",
+        "- `.you/`: You.md-owned generated layer for additive cross-agent context.",
+        "- `.claude/skills/youmd`, `.codex/skills/youmd`, `.cursor/rules/youmd.md`: host-specific rendered skill surfaces when linked.",
+        "",
+        "## Maintenance Rules",
+        "",
+        "- Update only the managed You.md block inside top-level instruction files.",
+        "- Never delete or rewrite user-authored repo context without explicit approval.",
+        "- Prefer additive file creation and managed-block refreshes over broad merges.",
+        "",
+    ].join("\n");
+}
+function generateYouProjectContextReadme(projectName) {
+    return [
+        "# You.md Supplemental Project Context",
+        "",
+        `This directory holds additive, generated context for \`${projectName}\`.`,
+        "",
+        "- Keep canonical project docs in `project-context/`.",
+        "- Keep generated cross-agent context in `.you/`.",
+        "- Use this layer when You.md needs to preserve shared behavior without clobbering hand-written repo docs.",
+        "",
+    ].join("\n");
+}
+function escapeRegex(input) {
+    return input.replace(/[.*+?^${}()|[\]\\]/g, "\\$&");
 }
 // ─── Remote Sync (non-blocking) ───────────────────────────────────────
 /**
@@ -623,6 +819,9 @@ function syncInstallToRemote(entry) {
         scope: entry.scope,
         identityFields: entry.identity_fields,
     }).catch((err) => {
+        // Dim warning instead of silent swallow
+        const chalk = require("chalk");
+        console.log(chalk.dim(`  sync: ${entry.name} remote sync failed (non-fatal)`));
         if (process.env.DEBUG)
             console.error(`[skill sync] install sync failed: ${err}`);
     });