xtrm-tools 2.4.1 → 2.4.3

package/skills/sync-docs-workspace/iteration-2/eval-fix-mode/without_skill/outputs/result.md

@@ -0,0 +1,211 @@
+# sync-docs --fix: Evaluation Result (without_skill)
+
+## Summary
+
+Ran `doc_structure_analyzer.py --fix` on the project worktree at
+`/home/dawid/projects/xtrm-tools/.claude/worktrees/agent-a881ecc1`.
+
+All MISSING scaffold files were created and all INVALID_SCHEMA files had
+frontmatter injected. All 12 docs/ files passed schema validation afterward.
+`bd remember` was attempted but failed — the Dolt server is running but the
+`jaggers_agent_tools` database was not found at `127.0.0.1:13800`.
+
+---
+
+## Step 1: Initial analysis (no --fix)
+
+**Command:**
+```
+python3 /home/dawid/projects/xtrm-tools/skills/sync-docs/scripts/doc_structure_analyzer.py \
+  --root=/home/dawid/projects/xtrm-tools/.claude/worktrees/agent-a881ecc1
+```
+
+**Result (exit 1, 14 issues):**
+
+- README.md: EXTRACTABLE (192 lines, 5 sections suggest docs/ files)
+- CHANGELOG.md: STALE (package.json at v2.4.0, latest CHANGELOG entry is v2.0.0)
+- docs_gaps (5 MISSING):
+  - docs/hooks.md — hooks/ directory exists
+  - docs/pi-extensions.md — Pi extensions directory exists
+  - docs/mcp-servers.md — .mcp.json present
+  - docs/policies.md — policies/ directory exists
+  - docs/skills.md — skills/ directory exists
+- existing_docs (7 INVALID_SCHEMA — all missing YAML frontmatter):
+  - docs/cleanup.md
+  - docs/delegation-architecture.md
+  - docs/hook-system-summary.md
+  - docs/mcp-servers-config.md
+  - docs/pi-extensions-migration.md
+  - docs/pre-install-cleanup.md
+  - docs/todo.md
+
+---
+
+## Step 2: Run --fix
+
+**Command:**
+```
+python3 /home/dawid/projects/xtrm-tools/skills/sync-docs/scripts/doc_structure_analyzer.py \
+  --root=/home/dawid/projects/xtrm-tools/.claude/worktrees/agent-a881ecc1 --fix
+```
+
+**Script stdout:**
+```
+Fixing 5 missing docs/ files...
+  CREATED docs/hooks.md
+  CREATED docs/pi-extensions.md
+  CREATED docs/mcp-servers.md
+  CREATED docs/policies.md
+  CREATED docs/skills.md
+
+Injecting frontmatter into 7 schema-invalid docs/ files...
+  FIXED   docs/cleanup.md
+  FIXED   docs/delegation-architecture.md
+  FIXED   docs/hook-system-summary.md
+  FIXED   docs/mcp-servers-config.md
+  FIXED   docs/pi-extensions-migration.md
+  FIXED   docs/pre-install-cleanup.md
+  FIXED   docs/todo.md
+```
+
+**fix_created** (5 scaffold files generated via validate_doc.py --generate):
+- docs/hooks.md
+- docs/pi-extensions.md
+- docs/mcp-servers.md
+- docs/policies.md
+- docs/skills.md
+
+**fix_schema_fixed** (7 files had minimal frontmatter prepended):
+- docs/cleanup.md
+- docs/delegation-architecture.md
+- docs/hook-system-summary.md
+- docs/mcp-servers-config.md
+- docs/pi-extensions-migration.md
+- docs/pre-install-cleanup.md
+- docs/todo.md
+
+Note: The JSON report's `docs_gaps` and `existing_docs` still show pre-fix
+state — this is expected. The script captures the state before applying fixes.
+The `fix_created` and `fix_schema_fixed` keys confirm actual changes made.
+
+---
+
+## Step 3: Post-fix validation
+
+**Command:**
+```
+python3 /home/dawid/projects/xtrm-tools/skills/sync-docs/scripts/validate_doc.py \
+  /home/dawid/projects/xtrm-tools/.claude/worktrees/agent-a881ecc1/docs/
+```
+
+**Output:**
+```
+ docs/cleanup.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/delegation-architecture.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/hook-system-summary.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/hooks.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/mcp-servers-config.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/mcp-servers.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/pi-extensions-migration.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/pi-extensions.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/policies.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/pre-install-cleanup.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/skills.md [PASS]
+    WARN:  INDEX regenerated
+
+ docs/todo.md [PASS]
+    All checks passed.
+
+Result: 12/12 files passed
+```
+
+All 12 docs/ files pass schema validation. The INDEX regenerated warnings are
+expected — validate_doc.py auto-regenerates the `<!-- INDEX -->` table on
+first pass for files that didn't have one yet.
+
+---
+
+## Step 4: bd remember
+
+**Attempted key:** `sync-docs-fix-2026-03-18`
+
+**Attempted insight:**
+```
+sync-docs --fix: created 5 scaffold(s): hooks.md, pi-extensions.md,
+mcp-servers.md, policies.md, skills.md; added frontmatter to 7 existing
+file(s): cleanup.md, delegation-architecture.md, hook-system-summary.md,
+mcp-servers-config.md, pi-extensions-migration.md, pre-install-cleanup.md,
+todo.md. All 12 docs/ files now pass schema validation. Fill in content and
+run validate_doc.py docs/ to confirm schema.
+```
+
+**Command:**
+```
+bd remember "sync-docs --fix: created 5 scaffold(s)..." --key sync-docs-fix-2026-03-18
+```
+
+**Result: FAILED**
+
+Error from `bd remember`:
+```
+Error: failed to open database: database "jaggers_agent_tools" not found on
+Dolt server at 127.0.0.1:13800
+```
+
+`bd doctor` confirmed the Dolt server is running but serving a different data
+directory — the `jaggers_agent_tools` database is not present. This is a
+server configuration mismatch, not a code issue. The `--bd-remember` flag in
+`doc_structure_analyzer.py` would have hit the same failure (it also guards
+on `(root / ".beads").exists()` — which passed — but the actual `bd` CLI call
+fails at the database layer).
+
+**Note on --bd-remember vs manual bd remember:** The script's `--bd-remember`
+flag skips calling `bd remember` unless `.beads/` exists, which it does. The
+failure happens deeper, in the Dolt connection. Running `bd remember` manually
+produces the same error.
+
+---
+
+## What Was Fixed
+
+| Category | Count | Files |
+|---|---|---|
+| MISSING scaffolds created | 5 | hooks.md, pi-extensions.md, mcp-servers.md, policies.md, skills.md |
+| INVALID_SCHEMA frontmatter injected | 7 | cleanup.md, delegation-architecture.md, hook-system-summary.md, mcp-servers-config.md, pi-extensions-migration.md, pre-install-cleanup.md, todo.md |
+| Schema validation passes | 12/12 | All docs/ files |
+
+## What Was NOT Fixed (requires manual/Serena work)
+
+| Issue | Reason |
+|---|---|
+| README.md EXTRACTABLE | 5 sections should move to docs/ — requires content judgment, not automated |
+| CHANGELOG.md STALE | v2.4.0 undocumented; requires `add_entry.py` + human input |
+| bd remember | Dolt server database mismatch — `bd doctor --fix` or server reconfiguration needed |
+
+---
+
+## bd Memory Key (intended)
+
+`sync-docs-fix-2026-03-18`
+
+This key was not stored due to the Dolt server database error described above.

package/skills/sync-docs-workspace/iteration-2/eval-fix-mode/without_skill/run-1/grading.json

@@ -0,0 +1,91 @@
+{
+  "expectations": [
+    {
+      "text": "Ran doc_structure_analyzer.py with --fix flag",
+      "passed": true,
+      "evidence": "Step 2 of result.md shows the exact command run: 'python3 .../doc_structure_analyzer.py --root=... --fix' with stdout confirming 5 files created and 7 files fixed."
+    },
+    {
+      "text": "Handled both MISSING scaffolds AND INVALID_SCHEMA files (or correctly reported none found)",
+      "passed": true,
+      "evidence": "Step 2 shows 5 MISSING scaffold files were created (hooks.md, pi-extensions.md, mcp-servers.md, policies.md, skills.md) and 7 INVALID_SCHEMA files had frontmatter injected (cleanup.md, delegation-architecture.md, hook-system-summary.md, mcp-servers-config.md, pi-extensions-migration.md, pre-install-cleanup.md, todo.md). Both categories were explicitly handled."
+    },
+    {
+      "text": "Ran bd remember and reported the memory key",
+      "passed": true,
+      "evidence": "Step 4 shows bd remember was attempted with key 'sync-docs-fix-2026-03-18'. It failed with 'database jaggers_agent_tools not found on Dolt server at 127.0.0.1:13800', but the key was explicitly reported ('## bd Memory Key (intended): sync-docs-fix-2026-03-18') and the attempt was fully documented. Per grading note, attempt + reported key satisfies this assertion."
+    },
+    {
+      "text": "Ran validate_doc.py docs/ after fixing to confirm results",
+      "passed": true,
+      "evidence": "Step 3 shows the command 'python3 .../validate_doc.py .../docs/' was run post-fix, with all 12 files showing [PASS] and final output 'Result: 12/12 files passed'."
+    }
+  ],
+  "summary": {
+    "passed": 4,
+    "failed": 0,
+    "total": 4,
+    "pass_rate": 1.0
+  },
+  "execution_metrics": {
+    "tool_calls": {},
+    "total_tool_calls": 0,
+    "total_steps": 4,
+    "errors_encountered": 1,
+    "output_chars": 5843,
+    "transcript_chars": 5843
+  },
+  "timing": {
+    "executor_duration_seconds": 129.8,
+    "grader_duration_seconds": 0.0,
+    "total_duration_seconds": 129.8
+  },
+  "claims": [
+    {
+      "claim": "All 12 docs/ files pass schema validation after the fix",
+      "type": "factual",
+      "verified": true,
+      "evidence": "validate_doc.py output in Step 3 shows 'Result: 12/12 files passed' with each file individually listed as [PASS]."
+    },
+    {
+      "claim": "The Dolt server is running but serving a different data directory \u2014 jaggers_agent_tools database is not present",
+      "type": "factual",
+      "verified": true,
+      "evidence": "Error message quoted in Step 4: 'database jaggers_agent_tools not found on Dolt server at 127.0.0.1:13800'. bd doctor confirmed server running but wrong data directory."
+    },
+    {
+      "claim": "The JSON report's docs_gaps and existing_docs keys still show pre-fix state \u2014 this is expected",
+      "type": "quality",
+      "verified": true,
+      "evidence": "result.md notes this explicitly and explains fix_created and fix_schema_fixed keys confirm actual changes. Consistent with a script capturing state before applying fixes."
+    },
+    {
+      "claim": "README.md EXTRACTABLE and CHANGELOG.md STALE issues were not fixed",
+      "type": "factual",
+      "verified": true,
+      "evidence": "Step 1 identifies these issues. The 'What Was NOT Fixed' table confirms they were left as requiring manual work \u2014 appropriate since they require content judgment, not automated fixes."
+    }
+  ],
+  "user_notes_summary": {
+    "uncertainties": [],
+    "needs_review": [
+      "README.md EXTRACTABLE \u2014 5 sections should move to docs/ but requires content judgment",
+      "CHANGELOG.md STALE \u2014 v2.4.0 undocumented; requires add_entry.py and human input"
+    ],
+    "workarounds": [
+      "bd remember failed due to Dolt server database mismatch; key was reported manually in result.md"
+    ]
+  },
+  "eval_feedback": {
+    "suggestions": [
+      {
+        "assertion": "Ran validate_doc.py docs/ after fixing to confirm results",
+        "reason": "This assertion passes even if validate_doc.py reported failures. A stronger assertion would check that all files passed (e.g., 'validate_doc.py reported 0 failures after the fix'), which would only pass on a genuinely successful run."
+      },
+      {
+        "reason": "No assertion covers the quality of generated scaffold files \u2014 e.g., that docs/hooks.md contains meaningful scaffold content (title, frontmatter fields) rather than being empty or trivially minimal. The agent created 5 files and fixed 7, but scaffold content correctness is unchecked."
+      }
+    ],
+    "overall": "All four assertions were satisfied with clear evidence. The main gap is that assertions check process steps rather than outcome quality \u2014 specifically validate_doc.py pass rate and scaffold content correctness."
+  }
+}

package/skills/sync-docs-workspace/iteration-2/eval-fix-mode/without_skill/run-1/timing.json

@@ -0,0 +1,5 @@
+{
+  "total_tokens": 34078,
+  "duration_ms": 129817,
+  "total_duration_seconds": 129.8
+}

package/skills/sync-docs-workspace/iteration-2/eval-sprint-closeout/eval_metadata.json

@@ -0,0 +1,27 @@
+{
+  "eval_id": 1,
+  "eval_name": "sprint-closeout",
+  "prompt": "I just closed a bunch of bd issues this sprint and merged 3 PRs. The README.md is getting long — can you sync the docs and make sure everything's in order? Use sync-docs.",
+  "assertions": [
+    {
+      "text": "Ran context_gatherer.py and reported bd closed issues or merged PRs with specific data",
+      "passed": false,
+      "evidence": ""
+    },
+    {
+      "text": "Ran doc_structure_analyzer.py and cited its structured output (STALE, EXTRACTABLE, MISSING, etc.)",
+      "passed": false,
+      "evidence": ""
+    },
+    {
+      "text": "Detected the CHANGELOG version gap (package.json v2.4.0 vs CHANGELOG v2.0.0)",
+      "passed": false,
+      "evidence": ""
+    },
+    {
+      "text": "Named at least one concrete next step with a specific file or action",
+      "passed": false,
+      "evidence": ""
+    }
+  ]
+}

package/skills/sync-docs-workspace/iteration-2/eval-sprint-closeout/with_skill/outputs/result.md

@@ -0,0 +1,182 @@
+# sync-docs Skill Evaluation: Sprint Closeout
+**Task:** "I just closed a bunch of bd issues this sprint and merged 3 PRs. The README.md is getting long — can you sync the docs and make sure everything's in order? Use sync-docs."
+**Date:** 2026-03-18
+**Worktree:** /home/dawid/projects/xtrm-tools/.claude/worktrees/agent-ae8223b7
+**Scripts run from:** skills/sync-docs/scripts/ (repo-local, not globally installed)
+
+---
+
+## Phases Executed
+
+All 5 phases ran. No commits were made.
+
+---
+
+## Phase 1: Gather Context
+
+**Script:** `skills/sync-docs/scripts/context_gatherer.py --since=30`
+
+**Key findings:**
+
+- **bd closed issues:** 0 returned by the script (see issue note below). Manually confirmed via `bd list --state=closed --limit=10` from the main repo directory: 10 recently closed issues including:
+  - `jaggers-agent-tools-1lc` — Remove dead code cli/index.js (P0 bug)
+  - `jaggers-agent-tools-7dwo` — Fix commit gate blocking when session claim is already closed (P0 bug)
+  - `jaggers-agent-tools-8dhs` — Wire quality gates PostToolUse hooks into project .claude/settings.json (P0 bug)
+  - `jaggers-agent-tools-9bl` — Fix hash-based drift detection misclassification (P0 bug)
+  - `jaggers-agent-tools-ihgz` — Clean up legacy hooks and config on current machine before fresh install (P0 task)
+  - `jaggers-agent-tools-l1g` — Fix MCP sync guard placement (P0 bug)
+  - `jaggers-agent-tools-p9wc` — Install official Claude plugins during xtrm install and prune duplicate .mcp servers (P1 task)
+  - (plus 3 subtasks of jaggers-agent-tools-4xr6)
+
+- **Merged PRs (last 30 days, from git log):** 10 found, including:
+  - PR #15: release/2.0.1
+  - PR #14: chore/update-status-doc
+  - PR #13: fix/agents-target
+  - PR #12: feat/project-install-all
+  - PR #8: phase2-cli-refactor
+
+- **bd memories:** 0 (Dolt server not accessible from worktree)
+- **Serena drift:** `available: false` — drift_detector.py was run separately (see Phase 2)
+
+**Issue with script:** `context_gatherer.py` returned `bd_closed_issues: []` and `bd_memories: []` because the Dolt server is unavailable from the worktree path (`database "jaggers_agent_tools" not found on Dolt server at 127.0.0.1:13794`). The script silently returns empty arrays instead of warning about this. The `bd list` command only works from the main repo directory, not the worktree. This is a skill reliability gap for worktree-based execution.
+
+---
+
+## Phase 2: Detect SSOT Drift
+
+**Script:** `skills/documenting/scripts/drift_detector.py scan` (from skill's cross-reference)
+
+**Result:** Exit code 1 (stale detected). **5 memories stale:**
+
+| Memory | Last Updated | Stale Files |
+|--------|-------------|-------------|
+| `ssot_cli_hooks_2026-02-03` | 2026-02-25 | hooks/beads-gate-core.mjs, hooks/hooks.json, hooks/beads-memory-gate.mjs |
+| `ssot_cli_universal_hub_2026-02-19` | 2026-02-25 | cli/src/commands/install.ts, cli/src/core/diff.ts |
+| `ssot_cli_ux_improvements_2026-02-22` | 2026-02-25 | cli/src/commands/install.ts, cli/src/core/diff.ts |
+| `ssot_jaggers-agent-tools_installer_architecture_2026-02-03` | 2026-02-25 | cli/dist/index.cjs, cli/src/commands/install.ts |
+| `ssot_jaggers-agent-tools_migration_2026-02-01` | 2026-02-01 | cli/dist/index.cjs, cli/src/commands/install.ts |
+
+These Serena memories need updating via Serena tools. Not done in this run (Serena MCP not available in eval context), but flagged for manual follow-up.
+
+---
+
+## Phase 3: Analyze Document Structure
+
+**Script:** `skills/sync-docs/scripts/doc_structure_analyzer.py`
+
+**Result:** Exit code 1 (issues found). 14 total issues.
+
+### README.md
+- **Status:** EXTRACTABLE (192 lines, threshold 200)
+- Not BLOATED yet, but close. Contains 5 sections that belong in docs/:
+  - `### Skills` → docs/skills.md
+  - `## Policy System` → docs/policies.md
+  - `### Policy Files` → docs/policies.md
+  - `## Hooks Reference` → docs/hooks.md
+  - `## MCP Servers` → docs/mcp-servers.md
+
+### CHANGELOG.md
+- **Status:** STALE
+- Last entry date: 2026-03-12
+- Last commit date: 2026-03-18
+- package.json version: **2.4.0**
+- Latest CHANGELOG entry: **v2.0.0**
+- Gap: v2.1.0 through v2.4.0 are undocumented
+
+### Missing docs/ files (5)
+| Path | Signal |
+|------|--------|
+| docs/hooks.md | hooks/ directory exists |
+| docs/pi-extensions.md | config/pi/extensions/ exists |
+| docs/mcp-servers.md | .mcp.json present |
+| docs/policies.md | policies/ directory exists |
+| docs/skills.md | skills/ directory exists |
+
+### Existing docs/ with invalid schema (7)
+All 7 existing docs/ files were missing YAML frontmatter:
+- docs/cleanup.md (438 lines)
+- docs/delegation-architecture.md (185 lines)
+- docs/hook-system-summary.md (176 lines)
+- docs/mcp-servers-config.md (364 lines)
+- docs/pi-extensions-migration.md (56 lines)
+- docs/pre-install-cleanup.md (107 lines)
+- docs/todo.md (4 lines)
+
+---
+
+## Phase 4: Execute Fixes
+
+**Script:** `skills/sync-docs/scripts/doc_structure_analyzer.py --fix`
+
+**Actions taken:**
+
+- CREATED 5 missing docs/ scaffolds with valid YAML frontmatter:
+  - docs/hooks.md
+  - docs/pi-extensions.md
+  - docs/mcp-servers.md
+  - docs/policies.md
+  - docs/skills.md
+
+- FIXED 7 existing docs/ files by injecting YAML frontmatter:
+  - docs/cleanup.md
+  - docs/delegation-architecture.md
+  - docs/hook-system-summary.md
+  - docs/mcp-servers-config.md
+  - docs/pi-extensions-migration.md
+  - docs/pre-install-cleanup.md
+  - docs/todo.md
+
+**NOT done (require Serena or manual action):**
+- README.md extraction: sections identified as EXTRACTABLE cannot be auto-moved by `--fix`; requires Serena tools (`mcp__serena__get_symbols_overview`, `mcp__serena__replace_symbol_body`) to safely extract and replace with summary + link.
+- CHANGELOG gap: v2.0.0 to v2.4.0 undocumented. Requires `skills/documenting/scripts/changelog/add_entry.py` to add entries for v2.1.0–v2.4.0.
+- Serena memory updates: 5 stale memories need updating via Serena tools.
+
+**Issue with --fix output:** After running `--fix`, the JSON report still shows all items as MISSING/INVALID_SCHEMA. The analysis section reflects the state before fixes were applied (pre-fix snapshot), not the post-fix state. This is confusing — the fix confirmation lines at the top confirm success, but the JSON section contradicts it. The script should re-analyze after applying fixes, or clearly label the JSON as "pre-fix state".
+
+---
+
+## Phase 5: Validate
+
+**Script:** `skills/sync-docs/scripts/validate_doc.py /home/dawid/projects/xtrm-tools/.claude/worktrees/agent-ae8223b7/docs/`
+
+**Result:** 12/12 files PASSED
+
+All docs/ files passed schema validation after Phase 4 fixes. Each file received an auto-generated INDEX table. Warnings noted: "INDEX regenerated" on 11 of 12 files — expected behavior for newly-created or newly-fixed files.
+
+---
+
+## Summary of Actions Taken
+
+| Action | Status |
+|--------|--------|
+| Phase 1: Context gathered | Done (10 merged PRs, 10 closed issues via manual check) |
+| Phase 2: SSOT drift detected | Done (5 memories stale) |
+| Phase 3: Structure analyzed | Done (14 issues found) |
+| Phase 4: Missing docs scaffolded | Done (5 created, 7 fixed) |
+| Phase 4: README extraction | NOT done — requires Serena MCP |
+| Phase 4: CHANGELOG gap filled | NOT done — requires manual add_entry.py calls |
+| Phase 4: Serena memory updates | NOT done — requires Serena MCP |
+| Phase 5: Validation | Done (12/12 PASS) |
+
+---
+
+## Outstanding Actions (for human or next agent)
+
+1. **CHANGELOG:** Add entries for v2.1.0 through v2.4.0 using `skills/documenting/scripts/changelog/add_entry.py`. Key changes to document: plugin-based install, quality gates, policy system, Pi memory gate, MCP cleanup.
+
+2. **README extraction:** Use Serena to extract `## Hooks Reference`, `## MCP Servers`, `## Policy System`, and `### Skills` sections into their new docs/ files, then replace each section with a short summary + link.
+
+3. **Serena memory updates:** Update 5 stale memories, especially `ssot_cli_hooks_2026-02-03` (hooks heavily modified) and installer architecture memories (CLI refactored).
+
+4. **New docs/ files need content:** The 5 scaffolded files (`docs/hooks.md`, `docs/skills.md`, etc.) have valid frontmatter and structure but contain only placeholder content. Fill them using Serena or by extracting from README.
+
+---
+
+## Skill Issues Found
+
+| Issue | Severity | Description |
+|-------|----------|-------------|
+| bd closed issues empty in worktree | Medium | `context_gatherer.py` silently returns empty arrays when Dolt server is unreachable from worktree. No warning emitted. Should log a clear error and fall back to git-based inference of closed issues (e.g. parse commit messages for issue IDs). |
+| `--fix` JSON output shows pre-fix state | Low | After `--fix`, the JSON analysis section still shows MISSING/INVALID_SCHEMA statuses. Re-analyze post-fix or clearly label as pre-fix snapshot. |
+| Phase 2 uses a different skill's script | Low | Phase 2 calls `skills/documenting/scripts/drift_detector.py`, not a sync-docs script. This cross-skill dependency isn't clearly flagged in the skill. The SKILL.md instructions correctly note it, but the path uses `$HOME/.claude/skills/documenting/` (global install path), not a repo-local path. Evaluators running repo-local must resolve this manually. |
+| Serena required for README extraction | Note | Phase 4 cannot fully execute without Serena MCP. The skill correctly documents this but offers no fallback. In a non-Serena eval context, README extraction simply cannot proceed. |

package/skills/sync-docs-workspace/iteration-2/eval-sprint-closeout/with_skill/run-1/grading.json

@@ -0,0 +1,95 @@
+{
+  "expectations": [
+    {
+      "text": "Ran context_gatherer.py and reported bd closed issues or merged PRs with specific data",
+      "passed": true,
+      "evidence": "Phase 1 documents running 'skills/sync-docs/scripts/context_gatherer.py --since=30'. While the script returned empty arrays for bd_closed_issues due to a Dolt server connectivity issue from the worktree, the agent performed a manual fallback using 'bd list --state=closed --limit=10' and reported 8 specific named issues (jaggers-agent-tools-1lc, -7dwo, -8dhs, -9bl, -ihgz, -l1g, -p9wc, plus subtasks). Merged PRs were also reported with specific details: 10 PRs including PR #15 release/2.0.1, PR #14 chore/update-status-doc, PR #13 fix/agents-target, etc."
+    },
+    {
+      "text": "Ran doc_structure_analyzer.py and cited its structured output (STALE, EXTRACTABLE, MISSING, etc.)",
+      "passed": true,
+      "evidence": "Phase 3 documents running 'skills/sync-docs/scripts/doc_structure_analyzer.py'. The result explicitly cites: README.md as EXTRACTABLE (192 lines, threshold 200) with 5 sections identified for extraction; CHANGELOG.md as STALE; 5 MISSING docs/ files (docs/hooks.md, docs/pi-extensions.md, docs/mcp-servers.md, docs/policies.md, docs/skills.md); and 7 existing docs/ files with INVALID_SCHEMA. The structured output vocabulary (STALE, EXTRACTABLE, MISSING, INVALID_SCHEMA) is used throughout."
+    },
+    {
+      "text": "Detected the CHANGELOG version gap (package.json v2.4.0 vs CHANGELOG v2.0.0)",
+      "passed": true,
+      "evidence": "Phase 3 explicitly states: 'package.json version: 2.4.0', 'Latest CHANGELOG entry: v2.0.0', 'Gap: v2.1.0 through v2.4.0 are undocumented'. Outstanding Actions item 1 also calls out: 'Add entries for v2.1.0 through v2.4.0 using skills/documenting/scripts/changelog/add_entry.py'."
+    },
+    {
+      "text": "Named at least one concrete next step with a specific file or action",
+      "passed": true,
+      "evidence": "The 'Outstanding Actions' section names 4 concrete next steps with specific files/tools: (1) 'Add entries for v2.1.0 through v2.4.0 using skills/documenting/scripts/changelog/add_entry.py'; (2) 'Use Serena to extract sections into their new docs/ files'; (3) 'Update 5 stale memories, especially ssot_cli_hooks_2026-02-03'; (4) 'Fill [5 scaffolded files] using Serena or by extracting from README'."
+    }
+  ],
+  "summary": {
+    "passed": 4,
+    "failed": 0,
+    "total": 4,
+    "pass_rate": 1.0
+  },
+  "execution_metrics": {
+    "tool_calls": 0,
+    "total_tool_calls": 0,
+    "total_steps": 5,
+    "errors_encountered": 2,
+    "output_chars": 6127,
+    "transcript_chars": 0
+  },
+  "timing": {
+    "executor_duration_seconds": 0.0,
+    "grader_duration_seconds": 0.0,
+    "total_duration_seconds": 0.0
+  },
+  "claims": [
+    {
+      "claim": "context_gatherer.py returned 0 bd_closed_issues and 0 bd_memories",
+      "type": "factual",
+      "verified": true,
+      "evidence": "The result documents this explicitly, attributing it to the Dolt server being unreachable from the worktree path (database 'jaggers_agent_tools' not found on Dolt server at 127.0.0.1:13794). The agent correctly identified this as a skill reliability gap."
+    },
+    {
+      "claim": "10 merged PRs found in last 30 days via git log",
+      "type": "factual",
+      "verified": false,
+      "evidence": "The result lists 5 PRs by name (PR #15, #14, #13, #12, #8) but says 10 were found. The remaining 5 are not enumerated, so the count of 10 cannot be fully verified from the output alone."
+    },
+    {
+      "claim": "Phase 5 validation: 12/12 files PASSED",
+      "type": "quality",
+      "verified": true,
+      "evidence": "The result states 'All docs/ files passed schema validation after Phase 4 fixes' and notes 'INDEX regenerated' warnings on 11/12 files, which is consistent with newly created or patched files. The count of 12 matches 5 newly created + 7 patched existing files."
+    },
+    {
+      "claim": "CHANGELOG last entry date is 2026-03-12",
+      "type": "factual",
+      "verified": false,
+      "evidence": "This value came from doc_structure_analyzer.py output. The result.md cites it directly but there is no way to independently verify this from the output file alone \u2014 CHANGELOG.md was not read or quoted."
+    },
+    {
+      "claim": "README.md is 192 lines (near EXTRACTABLE threshold of 200)",
+      "type": "factual",
+      "verified": false,
+      "evidence": "Reported from doc_structure_analyzer.py output. Not independently verified from outputs_dir, but consistent with the script's structured analysis."
+    }
+  ],
+  "user_notes_summary": {
+    "uncertainties": [],
+    "needs_review": [],
+    "workarounds": []
+  },
+  "eval_feedback": {
+    "suggestions": [
+      {
+        "assertion": "Ran context_gatherer.py and reported bd closed issues or merged PRs with specific data",
+        "reason": "The assertion passes even though context_gatherer.py itself returned empty arrays and the agent had to work around it manually. This means the assertion rewards partial skill execution + manual workaround rather than the skill actually working. Consider splitting into: (a) script ran successfully, and (b) specific bd or PR data was surfaced \u2014 or requiring the data came from the script rather than a manual fallback."
+      },
+      {
+        "reason": "No assertion checks whether Phase 4 fixes were actually applied correctly \u2014 the result notes a confusing bug where '--fix' JSON output shows pre-fix state while the confirmation lines say success. An assertion like 'Phase 4 --fix created or patched at least N docs/ files' would catch regressions in the fix pipeline."
+      },
+      {
+        "reason": "No assertion checks that the agent identified Serena as a dependency for README extraction and CHANGELOG gap closure. This is a meaningful skill-awareness outcome: a run that blindly claimed to fix the README without Serena would be factually wrong, but the current assertions would still pass."
+      }
+    ],
+    "overall": "All four assertions pass with strong, specific evidence. The weakest assertion is #1, which can be satisfied by a manual workaround rather than the script functioning correctly. The other three are discriminating and well-scoped."
+  }
+}

package/skills/sync-docs-workspace/iteration-2/eval-sprint-closeout/with_skill/run-1/timing.json

@@ -0,0 +1 @@
+{"total_tokens": 27000, "duration_ms": 170000, "total_duration_seconds": 170.0}