xtctx 0.11.1 → 0.11.3

package/dist/src/config/managed-block.d.ts

@@ -0,0 +1,29 @@
+/**
+ * Managed-block splicing shared by setup and disconnect.
+ *
+ * These helpers were duplicated across both modules, and an audit found the
+ * same defect in each copy: removal collapsed every run of 3+ newlines in the
+ * whole file — including inside user code fences — which the block's own text
+ * ("Content outside this managed block is preserved") promises never happens.
+ * Fixing it twice is what justifies one home for it.
+ */
+export declare const MARKERS: {
+    begin: string;
+    end: string;
+};
+export declare function normalizeNewlines(input: string): string;
+export declare function escapeRegExp(value: string): string;
+/**
+ * Remove every managed block, collapsing whitespace only at the splice seams
+ * so user content elsewhere in the file is byte-preserved.
+ */
+export declare function removeManagedBlocks(content: string): string;
+/**
+ * True when the file is predominantly CRLF, so writers can put it back the
+ * way the author had it instead of silently reformatting the whole file.
+ */
+export declare function isCrlfDominant(content: string): boolean;
+/** Re-apply a file's original line endings to rewritten content. */
+export declare function matchLineEndings(content: string, original: string | null): string;
+export declare function countManagedBlocks(content: string): number;
+//# sourceMappingURL=managed-block.d.ts.map

package/dist/src/config/managed-block.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"managed-block.d.ts","sourceRoot":"","sources":["../../../src/config/managed-block.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,eAAO,MAAM,OAAO;;;CAGnB,CAAC;AAEF,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAEvD;AAED,wBAAgB,YAAY,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAElD;AASD;;;GAGG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAoB3D;AAED;;;GAGG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAIvD;AAED,oEAAoE;AACpE,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,IAAI,GAAG,MAAM,CAIjF;AAED,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAE1D"}

package/dist/src/config/managed-block.js

@@ -0,0 +1,67 @@
+/**
+ * Managed-block splicing shared by setup and disconnect.
+ *
+ * These helpers were duplicated across both modules, and an audit found the
+ * same defect in each copy: removal collapsed every run of 3+ newlines in the
+ * whole file — including inside user code fences — which the block's own text
+ * ("Content outside this managed block is preserved") promises never happens.
+ * Fixing it twice is what justifies one home for it.
+ */
+export const MARKERS = {
+    begin: "<!-- xtctx:begin -->",
+    end: "<!-- xtctx:end -->",
+};
+export function normalizeNewlines(input) {
+    return input.replace(/\r\n/g, "\n");
+}
+export function escapeRegExp(value) {
+    return value.replace(/[.*+?^${}()|[\]\\]/g, "\\$&");
+}
+function managedBlockPattern(trailingNewline) {
+    return new RegExp(`${escapeRegExp(MARKERS.begin)}[\\s\\S]*?${escapeRegExp(MARKERS.end)}${trailingNewline ? "\\n?" : ""}`, "g");
+}
+/**
+ * Remove every managed block, collapsing whitespace only at the splice seams
+ * so user content elsewhere in the file is byte-preserved.
+ */
+export function removeManagedBlocks(content) {
+    const normalized = normalizeNewlines(content);
+    const parts = normalized.split(managedBlockPattern(true));
+    if (parts.length === 1) {
+        return normalized;
+    }
+    let result = parts[0];
+    for (let index = 1; index < parts.length; index += 1) {
+        const left = result.replace(/\n+$/, "");
+        const right = parts[index].replace(/^\n+/, "");
+        if (!left) {
+            result = right;
+        }
+        else if (!right) {
+            result = left;
+        }
+        else {
+            result = `${left}\n\n${right}`;
+        }
+    }
+    return result;
+}
+/**
+ * True when the file is predominantly CRLF, so writers can put it back the
+ * way the author had it instead of silently reformatting the whole file.
+ */
+export function isCrlfDominant(content) {
+    const crlf = content.match(/\r\n/g)?.length ?? 0;
+    const lf = content.match(/\n/g)?.length ?? 0;
+    return crlf > 0 && crlf * 2 > lf;
+}
+/** Re-apply a file's original line endings to rewritten content. */
+export function matchLineEndings(content, original) {
+    return original !== null && isCrlfDominant(original)
+        ? content.replace(/\r?\n/g, "\r\n")
+        : content;
+}
+export function countManagedBlocks(content) {
+    return normalizeNewlines(content).match(managedBlockPattern(false))?.length ?? 0;
+}
+//# sourceMappingURL=managed-block.js.map

package/dist/src/config/managed-block.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"managed-block.js","sourceRoot":"","sources":["../../../src/config/managed-block.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,MAAM,CAAC,MAAM,OAAO,GAAG;IACrB,KAAK,EAAE,sBAAsB;IAC7B,GAAG,EAAE,oBAAoB;CAC1B,CAAC;AAEF,MAAM,UAAU,iBAAiB,CAAC,KAAa;IAC7C,OAAO,KAAK,CAAC,OAAO,CAAC,OAAO,EAAE,IAAI,CAAC,CAAC;AACtC,CAAC;AAED,MAAM,UAAU,YAAY,CAAC,KAAa;IACxC,OAAO,KAAK,CAAC,OAAO,CAAC,qBAAqB,EAAE,MAAM,CAAC,CAAC;AACtD,CAAC;AAED,SAAS,mBAAmB,CAAC,eAAwB;IACnD,OAAO,IAAI,MAAM,CACf,GAAG,YAAY,CAAC,OAAO,CAAC,KAAK,CAAC,aAAa,YAAY,CAAC,OAAO,CAAC,GAAG,CAAC,GAAG,eAAe,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,EACtG,GAAG,CACJ,CAAC;AACJ,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,mBAAmB,CAAC,OAAe;IACjD,MAAM,UAAU,GAAG,iBAAiB,CAAC,OAAO,CAAC,CAAC;IAC9C,MAAM,KAAK,GAAG,UAAU,CAAC,KAAK,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC,CAAC;IAC1D,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACvB,OAAO,UAAU,CAAC;IACpB,CAAC;IAED,IAAI,MAAM,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;IACtB,KAAK,IAAI,KAAK,GAAG,CAAC,EAAE,KAAK,GAAG,KAAK,CAAC,MAAM,EAAE,KAAK,IAAI,CAAC,EAAE,CAAC;QACrD,MAAM,IAAI,GAAG,MAAM,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;QACxC,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC;QAC/C,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,MAAM,GAAG,KAAK,CAAC;QACjB,CAAC;aAAM,IAAI,CAAC,KAAK,EAAE,CAAC;YAClB,MAAM,GAAG,IAAI,CAAC;QAChB,CAAC;aAAM,CAAC;YACN,MAAM,GAAG,GAAG,IAAI,OAAO,KAAK,EAAE,CAAC;QACjC,CAAC;IACH,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,cAAc,CAAC,OAAe;IAC5C,MAAM,IAAI,GAAG,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,MAAM,IAAI,CAAC,CAAC;IACjD,MAAM,EAAE,GAAG,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE,MAAM,IAAI,CAAC,CAAC;IAC7C,OAAO,IAAI,GAAG,CAAC,IAAI,IAAI,GAAG,CAAC,GAAG,EAAE,CAAC;AACnC,CAAC;AAED,oEAAoE;AACpE,MAAM,UAAU,gBAAgB,CAAC,OAAe,EAAE,QAAuB;IACvE,OAAO,QAAQ,KAAK,IAAI,IAAI,cAAc,CAAC,QAAQ,CAAC;QAClD,CAAC,CAAC,OAAO,CAAC,OAAO,CAAC,QAAQ,EAAE,MAAM,CAAC;QACnC,CAAC,CAAC,OAAO,CAAC;AACd,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,OAAe;IAChD,OAAO,iBAAiB,CAAC,OAAO,CAAC,CAAC,KAAK,CAAC,mBAAmB,CAAC,KAAK,CAAC,CAAC,EAAE,MAAM,IAAI,CAAC,CAAC;AACnF,CAAC"}

package/dist/src/config/mcp-config.d.ts

@@ -19,6 +19,8 @@ export interface McpSyncResult {
     created: boolean;
     skipped: boolean;
     warning?: string;
+    /** True when the config could not be read, parsed, or written at all. */
+    failed?: boolean;
 }
 export interface McpSyncSummary {
     results: McpSyncResult[];

package/dist/src/config/mcp-config.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"mcp-config.d.ts","sourceRoot":"","sources":["../../../src/config/mcp-config.ts"],"names":[],"mappings":"AAMA;;;;GAIG;AACH,MAAM,WAAW,mBAAmB;IAClC,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB,GAAG,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC7B,SAAS,CAAC,EAAE,OAAO,GAAG,KAAK,GAAG,iBAAiB,CAAC;IAChD,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,SAAS,GAAG,QAAQ,CAAC;IAC5B,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,cAAc;IAC7B,OAAO,EAAE,aAAa,EAAE,CAAC;IACzB,cAAc,EAAE,MAAM,CAAC;CACxB;AAED,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,SAAS,GAAG,QAAQ,CAAC;IAC5B,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,eAAe,EAAE,CAAC;CAC5B;AAED;;;;;;;;;;;;;GAaG;AACH,MAAM,WAAW,WAAW;IAC1B,oEAAoE;IACpE,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC;IACzB,+CAA+C;IAC/C,WAAW,CAAC,EAAE,CAAC,WAAW,EAAE,MAAM,KAAK,MAAM,CAAC;IAC9C,4CAA4C;IAC5C,UAAU,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,MAAM,CAAC;IACzC;;;;;;;OAOG;IACH,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB;;;OAGG;IACH,UAAU,CAAC,EAAE,CAAC,MAAM,EAAE,mBAAmB,KAAK,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACvE;AAyED,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAEzD;AAED,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAGzD;AAED;;;;;;;;GAQG;AACH,wBAAsB,kBAAkB,CACtC,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,mBAAmB,EAAE,EAC9B,YAAY,EAAE,MAAM,EAAE,EACtB,OAAO,GAAE;IAAE,OAAO,CAAC,EAAE,MAAM,CAAA;CAAO,GACjC,OAAO,CAAC,cAAc,CAAC,CA4CzB;AAED,wBAAsB,sBAAsB,CAC1C,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,MAAM,EAClB,KAAK,EAAE,MAAM,EAAE,EACf,OAAO,GAAE;IAAE,OAAO,CAAC,EAAE,MAAM,CAAA;CAAO,GACjC,OAAO,CAAC,gBAAgB,CAAC,CA4B3B"}
+{"version":3,"file":"mcp-config.d.ts","sourceRoot":"","sources":["../../../src/config/mcp-config.ts"],"names":[],"mappings":"AAQA;;;;GAIG;AACH,MAAM,WAAW,mBAAmB;IAClC,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB,GAAG,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC7B,SAAS,CAAC,EAAE,OAAO,GAAG,KAAK,GAAG,iBAAiB,CAAC;IAChD,GAAG,CAAC,EAAE,MAAM,CAAC;CACd;AAED,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,SAAS,GAAG,QAAQ,CAAC;IAC5B,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,yEAAyE;IACzE,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED,MAAM,WAAW,cAAc;IAC7B,OAAO,EAAE,aAAa,EAAE,CAAC;IACzB,cAAc,EAAE,MAAM,CAAC;CACxB;AAED,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,SAAS,GAAG,QAAQ,CAAC;IAC5B,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,EAAE,OAAO,CAAC;IACjB,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,gBAAgB;IAC/B,OAAO,EAAE,eAAe,EAAE,CAAC;CAC5B;AAED;;;;;;;;;;;;;GAaG;AACH,MAAM,WAAW,WAAW;IAC1B,oEAAoE;IACpE,MAAM,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC;IACzB,+CAA+C;IAC/C,WAAW,CAAC,EAAE,CAAC,WAAW,EAAE,MAAM,KAAK,MAAM,CAAC;IAC9C,4CAA4C;IAC5C,UAAU,CAAC,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,MAAM,CAAC;IACzC;;;;;;;OAOG;IACH,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB;;;OAGG;IACH,UAAU,CAAC,EAAE,CAAC,MAAM,EAAE,mBAAmB,KAAK,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;CACvE;AAyED,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAEzD;AAED,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAGzD;AAED;;;;;;;;GAQG;AACH,wBAAsB,kBAAkB,CACtC,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,mBAAmB,EAAE,EAC9B,YAAY,EAAE,MAAM,EAAE,EACtB,OAAO,GAAE;IAAE,OAAO,CAAC,EAAE,MAAM,CAAA;CAAO,GACjC,OAAO,CAAC,cAAc,CAAC,CA4CzB;AAED,wBAAsB,sBAAsB,CAC1C,WAAW,EAAE,MAAM,EACnB,UAAU,EAAE,MAAM,EAClB,KAAK,EAAE,MAAM,EAAE,EACf,OAAO,GAAE;IAAE,OAAO,CAAC,EAAE,MAAM,CAAA;CAAO,GACjC,OAAO,CAAC,gBAAgB,CAAC,CA4B3B"}

package/dist/src/config/mcp-config.js

@@ -1,7 +1,9 @@
-import { mkdir, readFile, writeFile } from "node:fs/promises";
+import { readFile, rm } from "node:fs/promises";
 import { homedir } from "node:os";
-import { dirname, join } from "node:path";
+import { join } from "node:path";
+import { isDeepStrictEqual } from "node:util";
 import { parse as parseToml, stringify as stringifyToml } from "@iarna/toml";
+import { writeFileAtomic } from "../utils/atomic-file.js";
 import { errorMessage } from "../utils/errors.js";
 /**
  * Tools with native MCP configuration support.
@@ -169,12 +171,26 @@ async function writeMcpConfig(tool, configPath, scope, renderer, servers) {
             }
         }
         let existing = null;
+        let hadComments = false;
         if (existingContent !== null) {
             try {
                 existing = parseConfig(existingContent, format);
             }
             catch (error) {
-                return failedMcpSync(tool, configPath, scope, `Failed to parse existing MCP config; leaving it unchanged: ${errorMessage(error)}`);
+                // VS Code-family configs are JSONC in practice: retry with comments
+                // stripped before declaring the file unparsable.
+                if (format === "json") {
+                    try {
+                        existing = JSON.parse(stripJsonComments(existingContent));
+                        hadComments = true;
+                    }
+                    catch {
+                        return failedMcpSync(tool, configPath, scope, `Failed to parse existing MCP config; leaving it unchanged: ${errorMessage(error)}`);
+                    }
+                }
+                else {
+                    return failedMcpSync(tool, configPath, scope, `Failed to parse existing MCP config; leaving it unchanged: ${errorMessage(error)}`);
+                }
             }
         }
         const serverEntries = buildServerEntries(servers, buildEntry);
@@ -190,8 +206,25 @@ async function writeMcpConfig(tool, configPath, scope, renderer, servers) {
                 skipped: true,
             };
         }
-        await mkdir(dirname(configPath), { recursive: true });
-        await writeFile(configPath, content, "utf-8");
+        if (hadComments) {
+            // Rewriting would destroy the user's comments. If our entries are
+            // already present and identical the file is effectively up to date;
+            // otherwise leave it alone and say what to do.
+            if (existing && entriesUpToDate(existing, rootKey, serverEntries)) {
+                return { tool, path: configPath, scope, updated: false, created: false, skipped: true };
+            }
+            return {
+                tool,
+                path: configPath,
+                scope,
+                updated: false,
+                created: false,
+                skipped: true,
+                warning: `MCP config at ${configPath} contains comments, which xtctx will not rewrite. ` +
+                    `Add the xtctx server entry manually or remove the comments so xtctx can manage it.`,
+            };
+        }
+        await writeFileAtomic(configPath, content);
         return {
             tool,
             path: configPath,
@@ -211,6 +244,55 @@ function parseConfig(raw, format) {
     }
     return JSON.parse(raw);
 }
+/** Remove // and /* *\/ comments outside strings (JSONC tolerance). */
+function stripJsonComments(raw) {
+    let out = "";
+    let inString = false;
+    let escaped = false;
+    for (let index = 0; index < raw.length; index += 1) {
+        const char = raw[index];
+        if (inString) {
+            out += char;
+            if (escaped) {
+                escaped = false;
+            }
+            else if (char === "\\") {
+                escaped = true;
+            }
+            else if (char === '"') {
+                inString = false;
+            }
+            continue;
+        }
+        if (char === '"') {
+            inString = true;
+            out += char;
+            continue;
+        }
+        if (char === "/" && raw[index + 1] === "/") {
+            while (index < raw.length && raw[index] !== "\n")
+                index += 1;
+            out += "\n";
+            continue;
+        }
+        if (char === "/" && raw[index + 1] === "*") {
+            index += 2;
+            while (index < raw.length && !(raw[index] === "*" && raw[index + 1] === "/"))
+                index += 1;
+            index += 1;
+            continue;
+        }
+        out += char;
+    }
+    return out;
+}
+function entriesUpToDate(existing, rootKey, serverEntries) {
+    const root = existing[rootKey];
+    if (!root || typeof root !== "object" || Array.isArray(root)) {
+        return false;
+    }
+    return Object.entries(serverEntries).every(([name, entry]) => isDeepStrictEqual(root[name], entry));
+}
 function serializeConfig(value, format) {
     if (format === "toml") {
         // @iarna/toml emits a final newline already; normalise to single trailing.
@@ -250,6 +332,7 @@ function failedMcpSync(tool, configPath, scope, warning) {
         created: false,
         skipped: false,
         warning,
+        failed: true,
     };
 }
 // ---------------------------------------------------------------------------
@@ -426,10 +509,21 @@ async function removeMcpConfig(tool, configPath, scope, renderer, serverName) {
         }
         delete existingEntries[serverName];
         const updated = { ...existing, [rootKey]: existingEntries };
+        // If removing our entry leaves a project file that is nothing but an
+        // empty xtctx container, setup created it and disconnect owns removing it
+        // — leaving `{"mcp":{}}` behind is litter, not preservation. User-global
+        // app configs are left in place: they belong to the tool, not to us.
+        const onlyEmptyContainer = scope === "project" &&
+            Object.keys(existingEntries).length === 0 &&
+            Object.keys(updated).length === 1 &&
+            Object.prototype.hasOwnProperty.call(updated, rootKey);
+        if (onlyEmptyContainer) {
+            await rm(configPath, { force: true });
+            return { tool, path: configPath, scope, removed: true, skipped: false };
+        }
         const content = serializeConfig(updated, format);
         if (normalizeNewlines(existingContent) !== normalizeNewlines(content)) {
-            await mkdir(dirname(configPath), { recursive: true });
-            await writeFile(configPath, content, "utf-8");
+            await writeFileAtomic(configPath, content);
         }
         return {
             tool,

package/dist/src/config/mcp-config.js.map

@@ -1 +1 @@
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package/dist/src/config/setup.d.ts

@@ -16,6 +16,8 @@ export interface SetupResult {
         changed: boolean;
     }>;
     warnings: string[];
+    /** Hard failures (unreadable/unwritable configs); setup exits nonzero. */
+    failures: string[];
 }
 export interface PlannedSetupWrite {
     path: string;

package/dist/src/config/setup.d.ts.map

@@ -1 +1 @@
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package/dist/src/config/setup.js

@@ -1,13 +1,11 @@
-import { mkdir, readFile, rm, stat, writeFile } from "node:fs/promises";
-import { dirname, join, resolve } from "node:path";
+import { mkdir, readFile, rm, stat } from "node:fs/promises";
+import { join, resolve } from "node:path";
+import { writeFileAtomic } from "../utils/atomic-file.js";
+import { MARKERS, countManagedBlocks, matchLineEndings, removeManagedBlocks, } from "./managed-block.js";
 import { stringify as stringifyYaml } from "yaml";
 import { isGlobalOnlyMcpTool, syncToolMcpConfigs, } from "./mcp-config.js";
 import { renderSyncedSkillsBlock, syncProjectSkills, } from "./skills.js";
 import { SUPPORTED_TOOLS } from "../tools/sources.js";
-const MARKERS = {
-    begin: "<!-- xtctx:begin -->",
-    end: "<!-- xtctx:end -->",
-};
 export async function runSetup(options = {}) {
     const result = await setupProject(options);
     printSetupResult(result);
@@ -20,6 +18,7 @@ export async function setupProject(options = {}) {
     const configPath = join(xtctxDir, "config.yaml");
     const writes = [];
     const warnings = [];
+    const failures = [];
     if (options.repair) {
         await rm(join(xtctxDir, ".store"), { recursive: true, force: true });
         await rm(stateDir, { recursive: true, force: true });
@@ -39,6 +38,14 @@ export async function setupProject(options = {}) {
         kind: "config",
         changed: await writeIfChanged(configPath, renderProjectConfig(projectRoot, skillSync.config)),
     });
+    // The index holds raw transcript text from every configured tool, so
+    // committing it would publish conversation content. config.yaml and
+    // skills/ are project config and stay committable.
+    writes.push({
+        path: join(xtctxDir, ".gitignore"),
+        kind: "gitignore",
+        changed: await writeIfChanged(join(xtctxDir, ".gitignore"), ["# Local transcript index — never commit (holds raw conversation text).", "state/", ""].join("\n")),
+    });
     const serverDefinition = xtctxServerDefinition();
     const mcpSummary = await syncToolMcpConfigs(projectRoot, [serverDefinition], supportedMcpTools(options.includeGlobalMcp), options.homeDir ? { homeDir: options.homeDir } : {});
     for (const file of mcpSummary.results) {
@@ -47,7 +54,10 @@ export async function setupProject(options = {}) {
             kind: `mcp:${file.tool}`,
             changed: file.updated || file.created,
         });
-        if (file.warning) {
+        if (file.failed && file.warning) {
+            failures.push(file.warning);
+        }
+        else if (file.warning) {
             warnings.push(file.warning);
         }
     }
@@ -66,17 +76,18 @@ export async function setupProject(options = {}) {
         });
     }
     writes.push({
-        path: join(projectRoot, ".claude", "hooks.json"),
+        path: join(projectRoot, ".claude", "settings.json"),
         kind: "hook:claude-code",
         changed: await installClaudeHook(projectRoot),
     });
-    return { projectRoot, configPath, writes, warnings };
+    return { projectRoot, configPath, writes, warnings, failures };
 }
 export function describeSetupPlan(projectPath, selectedSkillIds = ["xtctx-handoff"], includeGlobalMcp = false) {
     const projectRoot = resolve(projectPath ?? process.cwd());
     const skillIds = [...new Set(["xtctx-handoff", ...selectedSkillIds])];
     const writes = [
         { path: join(projectRoot, ".xtctx", "config.yaml"), kind: "config" },
+        { path: join(projectRoot, ".xtctx", ".gitignore"), kind: "gitignore" },
         { path: join(projectRoot, ".mcp.json"), kind: "mcp:claude-code" },
         { path: join(projectRoot, ".cursor", "mcp.json"), kind: "mcp:cursor" },
         { path: join(projectRoot, ".vscode", "mcp.json"), kind: "mcp:copilot" },
@@ -87,7 +98,7 @@ export function describeSetupPlan(projectPath, selectedSkillIds = ["xtctx-handof
         { path: join(projectRoot, "GEMINI.md"), kind: "memory:antigravity" },
         { path: join(projectRoot, ".cursor", "rules", "xtctx.mdc"), kind: "memory:cursor" },
         { path: join(projectRoot, ".github", "copilot-instructions.md"), kind: "memory:copilot" },
-        { path: join(projectRoot, ".claude", "hooks.json"), kind: "hook:claude-code" },
+        { path: join(projectRoot, ".claude", "settings.json"), kind: "hook:claude-code" },
     ];
     for (const skillId of skillIds) {
         writes.push({ path: join(projectRoot, ".xtctx", "skills", skillId, "SKILL.md"), kind: `skill-source:${skillId}` }, { path: join(projectRoot, ".claude", "skills", skillId, "SKILL.md"), kind: `skill:claude-code:${skillId}` }, { path: join(projectRoot, ".cursor", "rules", "xtctx-skills", `${skillId}.mdc`), kind: `skill:cursor:${skillId}` }, {
@@ -231,38 +242,70 @@ function renderManagedBlock(input) {
         "",
     ].join("\n");
 }
+const CLAUDE_HOOK_MARKER = "xtctx --hook session-start";
+// Claude Code runs hooks with cwd = project root, so the command stays
+// path-independent — no shell-quoted absolute path to get injection wrong.
+const CLAUDE_HOOK_COMMAND = "npx -y xtctx --hook session-start --tool claude-code";
 async function installClaudeHook(projectRoot) {
-    const hooksPath = join(projectRoot, ".claude", "hooks.json");
-    const command = `npx -y xtctx --hook session-start --tool claude-code --project "${projectRoot.replace(/"/g, '\\"')}"`;
-    const existing = await readJsonIfExists(hooksPath);
+    // Claude Code reads hooks from .claude/settings.json (matcher-group shape).
+    // Earlier xtctx versions wrote a flat array to .claude/hooks.json, which
+    // Claude Code never loads — migrate those entries out.
+    const legacyChanged = await removeLegacyClaudeHook(join(projectRoot, ".claude", "hooks.json"));
+    const settingsPath = join(projectRoot, ".claude", "settings.json");
+    const existing = await readJsonIfExists(settingsPath);
     const root = isRecord(existing) ? existing : {};
     const hooks = isRecord(root.hooks) ? root.hooks : {};
     const sessionStart = Array.isArray(hooks.SessionStart) ? hooks.SessionStart : [];
-    const alreadyInstalled = sessionStart.some((entry) => isRecord(entry) && typeof entry.command === "string" && entry.command.includes("xtctx --hook session-start"));
+    const alreadyInstalled = sessionStart.some((group) => isRecord(group) &&
+        Array.isArray(group.hooks) &&
+        group.hooks.some((hook) => isRecord(hook) &&
+            typeof hook.command === "string" &&
+            hook.command.includes(CLAUDE_HOOK_MARKER)));
     if (alreadyInstalled) {
-        return false;
+        return legacyChanged;
     }
-    hooks.SessionStart = [...sessionStart, { type: "command", command }];
+    hooks.SessionStart = [
+        ...sessionStart,
+        { hooks: [{ type: "command", command: CLAUDE_HOOK_COMMAND }] },
+    ];
     root.hooks = hooks;
-    return writeIfChanged(hooksPath, JSON.stringify(root, null, 2) + "\n");
+    const changed = await writeIfChanged(settingsPath, JSON.stringify(root, null, 2) + "\n");
+    return changed || legacyChanged;
+}
+async function removeLegacyClaudeHook(hooksPath) {
+    const existing = await readJsonIfExists(hooksPath);
+    if (!isRecord(existing) || !isRecord(existing.hooks)) {
+        return false;
+    }
+    const hooks = existing.hooks;
+    const sessionStart = Array.isArray(hooks.SessionStart) ? hooks.SessionStart : [];
+    const kept = sessionStart.filter((entry) => !(isRecord(entry) &&
+        typeof entry.command === "string" &&
+        entry.command.includes(CLAUDE_HOOK_MARKER)));
+    if (kept.length === sessionStart.length) {
+        return false;
+    }
+    const otherHookKeys = Object.keys(hooks).filter((key) => key !== "SessionStart");
+    const otherRootKeys = Object.keys(existing).filter((key) => key !== "hooks");
+    if (kept.length === 0 && otherHookKeys.length === 0 && otherRootKeys.length === 0) {
+        // The file held nothing but the entry we wrote; remove it entirely.
+        await rm(hooksPath, { force: true });
+        return true;
+    }
+    hooks.SessionStart = kept;
+    return writeIfChanged(hooksPath, JSON.stringify(existing, null, 2) + "\n");
 }
 async function upsertManagedBlock(filePath, block, prelude = "") {
     const existing = await readUtf8IfExists(filePath);
     const repaired = existing ? removeManagedBlocks(existing).trimEnd() : "";
-    const prefix = prelude && !repaired.startsWith(prelude.trimEnd()) ? prelude : "";
+    // A file that already opens with YAML frontmatter keeps it — prepending
+    // the prelude again would produce a second, invalid frontmatter block.
+    const hasFrontmatter = repaired.startsWith("---");
+    const prefix = prelude && !hasFrontmatter && !repaired.startsWith(prelude.trimEnd()) ? prelude : "";
     const separator = repaired.length > 0 ? "\n\n" : "";
     const content = `${prefix}${repaired}${separator}${block}`;
     return writeIfChanged(filePath, content);
 }
-function removeManagedBlocks(content) {
-    const normalized = normalizeNewlines(content);
-    const pattern = new RegExp(`${escapeRegExp(MARKERS.begin)}[\\s\\S]*?${escapeRegExp(MARKERS.end)}\\n?`, "g");
-    return normalized.replace(pattern, "").replace(/\n{3,}/g, "\n\n");
-}
-function countManagedBlocks(content) {
-    const pattern = new RegExp(`${escapeRegExp(MARKERS.begin)}[\\s\\S]*?${escapeRegExp(MARKERS.end)}`, "g");
-    return content.match(pattern)?.length ?? 0;
-}
 function findStaleReferences(content) {
     const stale = [
         { label: "xtctx serve", pattern: /\bxtctx\s+serve\b/ },
@@ -276,13 +319,14 @@ function findStaleReferences(content) {
     return stale.filter((value) => value.pattern.test(content)).map((value) => value.label);
 }
 async function writeIfChanged(filePath, content) {
-    const normalized = normalizeNewlines(content);
     const existing = await readUtf8IfExists(filePath);
-    if (existing !== null && normalizeNewlines(existing) === normalized) {
+    // Preserve the existing file's dominant line endings instead of silently
+    // converting a CRLF-authored file to LF.
+    const finalContent = matchLineEndings(content, existing);
+    if (existing !== null && existing === finalContent) {
         return false;
     }
-    await mkdir(dirname(filePath), { recursive: true });
-    await writeFile(filePath, normalized, "utf-8");
+    await writeFileAtomic(filePath, finalContent);
     return true;
 }
 async function readUtf8IfExists(filePath) {
@@ -316,12 +360,9 @@ function printSetupResult(result) {
     for (const warning of result.warnings) {
         process.stdout.write(`  warning ${warning}\n`);
     }
-}
-function normalizeNewlines(input) {
-    return input.replace(/\r\n/g, "\n");
-}
-function escapeRegExp(value) {
-    return value.replace(/[.*+?^${}()|[\]\\]/g, "\\$&");
+    for (const failure of result.failures) {
+        process.stdout.write(`  error   ${failure}\n`);
+    }
 }
 function isRecord(value) {
     return Boolean(value) && typeof value === "object" && !Array.isArray(value);