wyrm-mcp 3.7.1 → 4.0.0

package/README.md

@@ -177,7 +177,23 @@ Add to `~/.codeium/windsurf/mcp_config.json`:
 
 Or run **`wyrm-setup`** to auto-detect and configure all installed AI clients at once.
 
-### 3. Use It
+### 3. Enable Semantic Search (Optional but Recommended)
+
+Wyrm uses hybrid search (FTS5 + semantic vectors) when [Ollama](https://ollama.com) is running locally. No configuration needed — Wyrm auto-detects it.
+
+```bash
+# Install Ollama: https://ollama.com
+ollama pull nomic-embed-text
+```
+
+That's it. Once `nomic-embed-text` is available, `wyrm_search` automatically upgrades from keyword-only to hybrid semantic+keyword search using Reciprocal Rank Fusion. If Ollama isn't running, Wyrm falls back to FTS5 silently — no errors, no config changes required.
+
+To use OpenAI embeddings instead:
+```bash
+WYRM_VECTOR_PROVIDER=openai OPENAI_API_KEY=sk-... wyrm-mcp
+```
+
+### 4. Use It
 
 Once connected, your AI has access to all Wyrm tools. Try:
 

package/dist/audit.d.ts

@@ -0,0 +1,82 @@
+/**
+ * Compliance audit trail (Tier 3.9).
+ *
+ * Hash-chained event log: each row records sha256(prev_hash || payload ||
+ * timestamp). Tampering with any historical entry breaks the chain.
+ * Optional Ed25519 signing layered on top provides a SOC2 / HIPAA-grade
+ * audit surface — every AI decision, prompt, tool call, code edit, with
+ * the prompt that caused it.
+ *
+ * `wyrm_audit_export(range)` produces a tamper-evident JSON bundle that
+ * an external auditor can verify offline:
+ *   1. Recompute the hash chain from genesis through the range.
+ *   2. Verify Ed25519 signatures against the operator's public key.
+ *   3. Confirm no gaps in IDs.
+ *
+ * @copyright 2026 Ghost Protocol (Pvt) Ltd. All Rights Reserved.
+ * @license Proprietary
+ */
+import type Database from 'better-sqlite3';
+export interface AuditEntry {
+    id: number;
+    event_kind: string;
+    actor: string | null;
+    project_id: number | null;
+    payload_json: string;
+    prev_hash: string;
+    row_hash: string;
+    signature: string | null;
+    logged_at: string;
+}
+export interface LogInput {
+    event_kind: string;
+    actor?: string | null;
+    project_id?: number | null;
+    payload: Record<string, unknown>;
+    signature?: string | null;
+}
+export interface AuditBundle {
+    version: 1;
+    range: {
+        start: string;
+        end: string;
+    };
+    exported_at: string;
+    entry_count: number;
+    first_id: number | null;
+    last_id: number | null;
+    genesis_prev_hash: string;
+    final_row_hash: string;
+    entries: AuditEntry[];
+}
+export interface VerificationResult {
+    ok: boolean;
+    total: number;
+    verified: number;
+    first_invalid_id?: number;
+    reason?: string;
+}
+export declare class AuditLog {
+    private db;
+    constructor(db: Database.Database);
+    /** Get the hash of the most recent entry (or 'genesis' if empty). */
+    private latestHash;
+    /** Append a hash-chained event. Returns the inserted row. */
+    log(input: LogInput): AuditEntry;
+    get(id: number): AuditEntry | null;
+    /** Verify the entire chain from the first row through the latest.
+     * Useful for periodic self-audits. */
+    verify(): VerificationResult;
+    /** Export a date-ranged tamper-evident bundle. Range is inclusive on
+     * both ends. Verification still walks from genesis to ensure no gaps. */
+    export(opts: {
+        range_start?: string;
+        range_end?: string;
+    }): AuditBundle;
+    /** Statically verify a previously-exported bundle (no DB required).
+     * Useful for the external auditor who only has the JSON file. */
+    static verifyBundle(bundle: AuditBundle): VerificationResult;
+    /** Slim query for recent entries — UI / dashboards. */
+    recent(limit?: number, kind?: string): AuditEntry[];
+}
+//# sourceMappingURL=audit.d.ts.map

package/dist/audit.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"audit.d.ts","sourceRoot":"","sources":["../src/audit.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAEH,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAG3C,MAAM,WAAW,UAAU;IACzB,EAAE,EAAE,MAAM,CAAC;IACX,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACrB,UAAU,EAAE,MAAM,GAAG,IAAI,CAAC;IAC1B,YAAY,EAAE,MAAM,CAAC;IACrB,SAAS,EAAE,MAAM,CAAC;IAClB,QAAQ,EAAE,MAAM,CAAC;IACjB,SAAS,EAAE,MAAM,GAAG,IAAI,CAAC;IACzB,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,QAAQ;IACvB,UAAU,EAAE,MAAM,CAAC;IACnB,KAAK,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,UAAU,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC3B,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;IACjC,SAAS,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;CAC3B;AAED,MAAM,WAAW,WAAW;IAC1B,OAAO,EAAE,CAAC,CAAC;IACX,KAAK,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,GAAG,EAAE,MAAM,CAAA;KAAE,CAAC;IACtC,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,OAAO,EAAE,MAAM,GAAG,IAAI,CAAC;IACvB,iBAAiB,EAAE,MAAM,CAAC;IAC1B,cAAc,EAAE,MAAM,CAAC;IACvB,OAAO,EAAE,UAAU,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,kBAAkB;IACjC,EAAE,EAAE,OAAO,CAAC;IACZ,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,MAAM,CAAC;IACjB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAID,qBAAa,QAAQ;IACP,OAAO,CAAC,EAAE;gBAAF,EAAE,EAAE,QAAQ,CAAC,QAAQ;IAEzC,qEAAqE;IACrE,OAAO,CAAC,UAAU;IAOlB,6DAA6D;IAC7D,GAAG,CAAC,KAAK,EAAE,QAAQ,GAAG,UAAU;IAwBhC,GAAG,CAAC,EAAE,EAAE,MAAM,GAAG,UAAU,GAAG,IAAI;IAMlC;0CACsC;IACtC,MAAM,IAAI,kBAAkB;IA8B5B;6EACyE;IACzE,MAAM,CAAC,IAAI,EAAE;QAAE,WAAW,CAAC,EAAE,MAAM,CAAC;QAAC,SAAS,CAAC,EAAE,MAAM,CAAA;KAAE,GAAG,WAAW;IA+BvE;qEACiE;IACjE,MAAM,CAAC,YAAY,CAAC,MAAM,EAAE,WAAW,GAAG,kBAAkB;IAoC5D,uDAAuD;IACvD,MAAM,CAAC,KAAK,SAAM,EAAE,IAAI,CAAC,EAAE,MAAM,GAAG,UAAU,EAAE;CAUjD"}

package/dist/audit.js

@@ -0,0 +1,151 @@
+/**
+ * Compliance audit trail (Tier 3.9).
+ *
+ * Hash-chained event log: each row records sha256(prev_hash || payload ||
+ * timestamp). Tampering with any historical entry breaks the chain.
+ * Optional Ed25519 signing layered on top provides a SOC2 / HIPAA-grade
+ * audit surface — every AI decision, prompt, tool call, code edit, with
+ * the prompt that caused it.
+ *
+ * `wyrm_audit_export(range)` produces a tamper-evident JSON bundle that
+ * an external auditor can verify offline:
+ *   1. Recompute the hash chain from genesis through the range.
+ *   2. Verify Ed25519 signatures against the operator's public key.
+ *   3. Confirm no gaps in IDs.
+ *
+ * @copyright 2026 Ghost Protocol (Pvt) Ltd. All Rights Reserved.
+ * @license Proprietary
+ */
+import { createHash } from 'crypto';
+const GENESIS_HASH = 'genesis';
+export class AuditLog {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    /** Get the hash of the most recent entry (or 'genesis' if empty). */
+    latestHash() {
+        const row = this.db.prepare('SELECT row_hash FROM audit_log ORDER BY id DESC LIMIT 1').get();
+        return row?.row_hash ?? GENESIS_HASH;
+    }
+    /** Append a hash-chained event. Returns the inserted row. */
+    log(input) {
+        const payloadJson = JSON.stringify(input.payload);
+        const loggedAt = new Date().toISOString();
+        const prevHash = this.latestHash();
+        const hashInput = `${prevHash}|${input.event_kind}|${payloadJson}|${loggedAt}`;
+        const rowHash = createHash('sha256').update(hashInput).digest('hex');
+        const info = this.db.prepare(`
+      INSERT INTO audit_log
+        (event_kind, actor, project_id, payload_json, prev_hash, row_hash, signature, logged_at)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?)
+    `).run(input.event_kind, input.actor ?? null, input.project_id ?? null, payloadJson, prevHash, rowHash, input.signature ?? null, loggedAt);
+        return this.get(info.lastInsertRowid);
+    }
+    get(id) {
+        return this.db.prepare('SELECT * FROM audit_log WHERE id = ?').get(id) ?? null;
+    }
+    /** Verify the entire chain from the first row through the latest.
+     * Useful for periodic self-audits. */
+    verify() {
+        const rows = this.db.prepare('SELECT * FROM audit_log ORDER BY id ASC').all();
+        if (rows.length === 0)
+            return { ok: true, total: 0, verified: 0 };
+        let expectedPrev = GENESIS_HASH;
+        for (const row of rows) {
+            if (row.prev_hash !== expectedPrev) {
+                return {
+                    ok: false, total: rows.length, verified: row.id - 1,
+                    first_invalid_id: row.id,
+                    reason: `prev_hash mismatch: expected ${expectedPrev}, got ${row.prev_hash}`,
+                };
+            }
+            const recomputed = createHash('sha256')
+                .update(`${row.prev_hash}|${row.event_kind}|${row.payload_json}|${row.logged_at}`)
+                .digest('hex');
+            if (recomputed !== row.row_hash) {
+                return {
+                    ok: false, total: rows.length, verified: row.id - 1,
+                    first_invalid_id: row.id,
+                    reason: `row_hash mismatch at id ${row.id}: recomputed ${recomputed}, stored ${row.row_hash}`,
+                };
+            }
+            expectedPrev = row.row_hash;
+        }
+        return { ok: true, total: rows.length, verified: rows.length };
+    }
+    /** Export a date-ranged tamper-evident bundle. Range is inclusive on
+     * both ends. Verification still walks from genesis to ensure no gaps. */
+    export(opts) {
+        const params = [];
+        let where = '';
+        if (opts.range_start) {
+            where += ' AND logged_at >= ?';
+            params.push(opts.range_start);
+        }
+        if (opts.range_end) {
+            where += ' AND logged_at <= ?';
+            params.push(opts.range_end);
+        }
+        const entries = this.db.prepare(`SELECT * FROM audit_log WHERE 1=1 ${where} ORDER BY id ASC`).all(...params);
+        return {
+            version: 1,
+            range: {
+                start: opts.range_start ?? entries[0]?.logged_at ?? new Date(0).toISOString(),
+                end: opts.range_end ?? entries[entries.length - 1]?.logged_at ?? new Date().toISOString(),
+            },
+            exported_at: new Date().toISOString(),
+            entry_count: entries.length,
+            first_id: entries[0]?.id ?? null,
+            last_id: entries[entries.length - 1]?.id ?? null,
+            genesis_prev_hash: entries[0]?.prev_hash ?? GENESIS_HASH,
+            final_row_hash: entries[entries.length - 1]?.row_hash ?? GENESIS_HASH,
+            entries,
+        };
+    }
+    /** Statically verify a previously-exported bundle (no DB required).
+     * Useful for the external auditor who only has the JSON file. */
+    static verifyBundle(bundle) {
+        if (bundle.version !== 1) {
+            return { ok: false, total: bundle.entry_count, verified: 0, reason: `Unknown bundle version ${bundle.version}` };
+        }
+        let expectedPrev = bundle.genesis_prev_hash;
+        let verified = 0;
+        for (const row of bundle.entries) {
+            if (row.prev_hash !== expectedPrev) {
+                return {
+                    ok: false, total: bundle.entries.length, verified,
+                    first_invalid_id: row.id,
+                    reason: `prev_hash mismatch: expected ${expectedPrev}, got ${row.prev_hash}`,
+                };
+            }
+            const recomputed = createHash('sha256')
+                .update(`${row.prev_hash}|${row.event_kind}|${row.payload_json}|${row.logged_at}`)
+                .digest('hex');
+            if (recomputed !== row.row_hash) {
+                return {
+                    ok: false, total: bundle.entries.length, verified,
+                    first_invalid_id: row.id,
+                    reason: `row_hash mismatch at id ${row.id}`,
+                };
+            }
+            expectedPrev = row.row_hash;
+            verified++;
+        }
+        if (bundle.entries.length > 0 && bundle.final_row_hash !== expectedPrev) {
+            return {
+                ok: false, total: bundle.entries.length, verified,
+                reason: `final_row_hash mismatch`,
+            };
+        }
+        return { ok: true, total: bundle.entries.length, verified };
+    }
+    /** Slim query for recent entries — UI / dashboards. */
+    recent(limit = 100, kind) {
+        if (kind) {
+            return this.db.prepare('SELECT * FROM audit_log WHERE event_kind = ? ORDER BY id DESC LIMIT ?').all(kind, limit);
+        }
+        return this.db.prepare('SELECT * FROM audit_log ORDER BY id DESC LIMIT ?').all(limit);
+    }
+}
+//# sourceMappingURL=audit.js.map

package/dist/audit.js.map

@@ -0,0 +1 @@
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package/dist/causality.d.ts

@@ -0,0 +1,76 @@
+/**
+ * Causality — decision chains + downstream invalidation.
+ *
+ * "We chose Postgres because Y" → "Y turned out to be wrong" → flag every
+ * downstream decision built on Y for re-evaluation.
+ *
+ * Edges link a `(kind, id)` pair to another `(kind, id)` pair with a
+ * relation (`because_of`, `supersedes`, `refutes`, `verifies`). When a
+ * ground truth flips to stale or gets superseded, the invalidation
+ * cascade walks the edge graph and flags downstream decisions.
+ *
+ * @copyright 2026 Ghost Protocol (Pvt) Ltd. All Rights Reserved.
+ * @license Proprietary
+ */
+import type Database from 'better-sqlite3';
+export type EdgeKind = 'truth' | 'artifact' | 'quest' | 'session' | 'data';
+export type EdgeRelation = 'because_of' | 'supersedes' | 'refutes' | 'verifies';
+export interface DecisionEdge {
+    id: number;
+    project_id: number;
+    from_kind: EdgeKind;
+    from_id: number;
+    to_kind: EdgeKind;
+    to_id: number;
+    relation: EdgeRelation;
+    rationale: string | null;
+    confidence: number;
+    created_at: string;
+    invalidated_at: string | null;
+}
+export interface LinkInput {
+    project_id: number;
+    from_kind: EdgeKind;
+    from_id: number;
+    to_kind: EdgeKind;
+    to_id: number;
+    relation?: EdgeRelation;
+    rationale?: string;
+    confidence?: number;
+}
+export interface InvalidationResult {
+    invalidated: number;
+    affected: Array<{
+        kind: EdgeKind;
+        id: number;
+        edge_id: number;
+        rationale: string | null;
+    }>;
+}
+export declare class Causality {
+    private db;
+    constructor(db: Database.Database);
+    /** Record that `from` was decided BECAUSE OF `to` (or other relation). */
+    link(input: LinkInput): DecisionEdge;
+    get(id: number): DecisionEdge | null;
+    /** All decisions that depend on the given source (outgoing edges from source). */
+    downstreamOf(kind: EdgeKind, id: number): DecisionEdge[];
+    /** All sources that the given decision was based on (incoming edges to decision). */
+    upstreamOf(kind: EdgeKind, id: number): DecisionEdge[];
+    /** Walk downstream from a source, depth-first, marking dependent decisions.
+     * Returns the set of (kind, id) pairs affected. Idempotent — already-
+     * invalidated edges are skipped. */
+    invalidateDownstream(kind: EdgeKind, id: number, reason?: string): InvalidationResult;
+    /** Path query: list edges forming the decision chain from `from` back to `to`,
+     * walking upstream up to maxDepth. Returns empty if no path. */
+    pathTo(from: {
+        kind: EdgeKind;
+        id: number;
+    }, to: {
+        kind: EdgeKind;
+        id: number;
+    }, maxDepth?: number): DecisionEdge[];
+    /** List all currently-invalidated edges that touch a project. */
+    invalidatedInProject(projectId: number, limit?: number): DecisionEdge[];
+}
+//# sourceMappingURL=causality.d.ts.map

package/dist/causality.d.ts.map

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package/dist/causality.js

@@ -0,0 +1,115 @@
+/**
+ * Causality — decision chains + downstream invalidation.
+ *
+ * "We chose Postgres because Y" → "Y turned out to be wrong" → flag every
+ * downstream decision built on Y for re-evaluation.
+ *
+ * Edges link a `(kind, id)` pair to another `(kind, id)` pair with a
+ * relation (`because_of`, `supersedes`, `refutes`, `verifies`). When a
+ * ground truth flips to stale or gets superseded, the invalidation
+ * cascade walks the edge graph and flags downstream decisions.
+ *
+ * @copyright 2026 Ghost Protocol (Pvt) Ltd. All Rights Reserved.
+ * @license Proprietary
+ */
+export class Causality {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    /** Record that `from` was decided BECAUSE OF `to` (or other relation). */
+    link(input) {
+        const info = this.db.prepare(`
+      INSERT INTO decision_edges
+        (project_id, from_kind, from_id, to_kind, to_id, relation, rationale, confidence)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?)
+    `).run(input.project_id, input.from_kind, input.from_id, input.to_kind, input.to_id, input.relation ?? 'because_of', input.rationale ?? null, input.confidence ?? 1.0);
+        return this.get(info.lastInsertRowid);
+    }
+    get(id) {
+        return this.db.prepare('SELECT * FROM decision_edges WHERE id = ?').get(id) ?? null;
+    }
+    /** All decisions that depend on the given source (outgoing edges from source). */
+    downstreamOf(kind, id) {
+        return this.db.prepare(`
+      SELECT * FROM decision_edges
+      WHERE to_kind = ? AND to_id = ? AND invalidated_at IS NULL
+      ORDER BY created_at DESC
+    `).all(kind, id);
+    }
+    /** All sources that the given decision was based on (incoming edges to decision). */
+    upstreamOf(kind, id) {
+        return this.db.prepare(`
+      SELECT * FROM decision_edges
+      WHERE from_kind = ? AND from_id = ? AND invalidated_at IS NULL
+      ORDER BY created_at DESC
+    `).all(kind, id);
+    }
+    /** Walk downstream from a source, depth-first, marking dependent decisions.
+     * Returns the set of (kind, id) pairs affected. Idempotent — already-
+     * invalidated edges are skipped. */
+    invalidateDownstream(kind, id, reason) {
+        const affected = [];
+        const seen = new Set();
+        const queue = [{ kind, id }];
+        const markEdge = this.db.prepare(`
+      UPDATE decision_edges
+      SET invalidated_at = datetime('now'),
+          rationale = COALESCE(?, rationale)
+      WHERE id = ?
+    `);
+        while (queue.length > 0) {
+            const node = queue.shift();
+            const key = `${node.kind}:${node.id}`;
+            if (seen.has(key))
+                continue;
+            seen.add(key);
+            const edges = this.downstreamOf(node.kind, node.id);
+            for (const edge of edges) {
+                markEdge.run(reason ?? null, edge.id);
+                affected.push({
+                    kind: edge.from_kind,
+                    id: edge.from_id,
+                    edge_id: edge.id,
+                    rationale: edge.rationale,
+                });
+                queue.push({ kind: edge.from_kind, id: edge.from_id });
+            }
+        }
+        return { invalidated: affected.length, affected };
+    }
+    /** Path query: list edges forming the decision chain from `from` back to `to`,
+     * walking upstream up to maxDepth. Returns empty if no path. */
+    pathTo(from, to, maxDepth = 6) {
+        const visited = new Set();
+        const stack = [
+            { node: from, path: [] },
+        ];
+        while (stack.length > 0) {
+            const { node, path } = stack.pop();
+            const key = `${node.kind}:${node.id}`;
+            if (visited.has(key) || path.length > maxDepth)
+                continue;
+            visited.add(key);
+            if (node.kind === to.kind && node.id === to.id)
+                return path;
+            for (const edge of this.upstreamOf(node.kind, node.id)) {
+                stack.push({
+                    node: { kind: edge.to_kind, id: edge.to_id },
+                    path: [...path, edge],
+                });
+            }
+        }
+        return [];
+    }
+    /** List all currently-invalidated edges that touch a project. */
+    invalidatedInProject(projectId, limit = 50) {
+        return this.db.prepare(`
+      SELECT * FROM decision_edges
+      WHERE project_id = ? AND invalidated_at IS NOT NULL
+      ORDER BY invalidated_at DESC
+      LIMIT ?
+    `).all(projectId, limit);
+    }
+}
+//# sourceMappingURL=causality.js.map

package/dist/causality.js.map

@@ -0,0 +1 @@
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package/dist/database.js

@@ -20,6 +20,7 @@ import { spawnSync } from 'child_process';
 import { getResilienceManager } from './resilience.js';
 import { WyrmLogger } from './logger.js';
 import { runMigrations, getSchemaVersion } from './migrations.js';
+import { validateProjectPath } from './security.js';
 export class WyrmDB {
     db;
     BATCH_SIZE = 1000;
@@ -94,6 +95,8 @@ export class WyrmDB {
     }
     // ==================== WATCH DIRECTORIES ====================
     addWatchDir(path, recursive = true) {
+        // Validate path is within allowed directories to prevent directory traversal
+        validateProjectPath(path);
         return this.db.prepare(`
       INSERT INTO watch_dirs (path, recursive)
       VALUES (?, ?)
@@ -109,6 +112,8 @@ export class WyrmDB {
     }
     // ==================== AUTO-DISCOVERY ====================
     scanForProjects(rootPath, recursive = true) {
+        // Validate path is within allowed directories to prevent directory traversal
+        validateProjectPath(rootPath);
         const discovered = [];
         const scan = (dir, depth = 0) => {
             if (depth > 3 && recursive)