wuepgg3-track 7.0.2 → 7.0.3

package/dist/{BufferResource-PGFg9nzM.mjs → BufferResource-DXj79gGh.mjs}

@@ -1,4 +1,4 @@
-import { w as U, g, h as c, u as S, i as _, j as m, k as I, l as p } from "./index-D2xCvxdB.mjs";
+import { w as U, g, h as c, u as S, i as _, j as m, k as I, l as p } from "./index-Dst209sN.mjs";
 const x = {
   name: "local-uniform-bit",
   vertex: {

package/dist/{CanvasRenderer-BbiN3ivk.mjs → CanvasRenderer-BAPUkyP3.mjs}

@@ -1,5 +1,5 @@
-import { D as O, C as ee, m as D, n as Re, o as ce, M as F, E as R, p as Xe, w as $e, c as He, q as ze, s as Je, r as Ke, F as Qe, t as Ze, v as et, A as tt, R as nt, f as he } from "./index-D2xCvxdB.mjs";
-import { R as at, S as st, B as ot, a as rt, b as it, c as ct, A as lt, C as ht } from "./RenderTargetSystem-B4MC9aML.mjs";
+import { D as O, C as ee, m as D, n as Re, o as ce, M as F, E as R, p as Xe, w as $e, c as He, q as ze, s as Je, r as Ke, F as Qe, t as Ze, v as et, A as tt, R as nt, f as he } from "./index-Dst209sN.mjs";
+import { R as at, S as st, B as ot, a as rt, b as it, c as ct, A as lt, C as ht } from "./RenderTargetSystem-bLcPlyxk.mjs";
 let Z;
 function Ae(o) {
   const e = O.get().createCanvas(6, 1), t = e.getContext("2d");

package/dist/{Filter-W7h2GrVp.mjs → Filter-Dee9z37f.mjs}

@@ -1,4 +1,4 @@
-import { S as n, a as u, G as o, b as f } from "./index-D2xCvxdB.mjs";
+import { S as n, a as u, G as o, b as f } from "./index-Dst209sN.mjs";
 const s = class i extends n {
   /**
    * @param options - The optional parameters of this filter.

package/dist/{RenderTargetSystem-B4MC9aML.mjs → RenderTargetSystem-bLcPlyxk.mjs}

@@ -1,5 +1,5 @@
-import { Z as Ve, U as oe, M as m, G as Ne, b as je, a as $e, _ as le, E as l, f as W, $ as w, a0 as qe, e as z, T, R as V, a1 as de, a2 as Ke, c as f, h as g, N as D, a3 as ue, w as ce, a4 as ee, a5 as he, a6 as pe, a7 as fe, a8 as me, H as P, a9 as Ye, C as E, D as N, O as v, aa as B, ab as Je, P as Xe, ac as Ze, B as Qe, x as te, ad as re, ae as p, l as et, v as O, af as tt, ag as rt, ah as st, ai as nt } from "./index-D2xCvxdB.mjs";
-import { F as at } from "./Filter-W7h2GrVp.mjs";
+import { Z as Ve, U as oe, M as m, G as Ne, b as je, a as $e, _ as le, E as l, f as W, $ as w, a0 as qe, e as z, T, R as V, a1 as de, a2 as Ke, c as f, h as g, N as D, a3 as ue, w as ce, a4 as ee, a5 as he, a6 as pe, a7 as fe, a8 as me, H as P, a9 as Ye, C as E, D as N, O as v, aa as B, ab as Je, P as Xe, ac as Ze, B as Qe, x as te, ad as re, ae as p, l as et, v as O, af as tt, ag as rt, ah as st, ai as nt } from "./index-Dst209sN.mjs";
+import { F as at } from "./Filter-Dee9z37f.mjs";
 var it = `in vec2 vMaskCoord;
 in vec2 vTextureCoord;
 

package/dist/{WebGLRenderer-yx4xYIRO.mjs → WebGLRenderer-CzBvLi02.mjs}

@@ -1,6 +1,6 @@
-import { D as R, a as F, E as d, J as O, j as B, w as p, g as z, b as ye, S as P, c as S, d as Ne, O as q, aj as Ce, h as g, aa as V, v as y, N, U as M, M as Z, ak as J, al as De, am as Q, an as Ie, ao as Ge, A as Ue, R as Fe, f as A } from "./index-D2xCvxdB.mjs";
-import { e as Oe, G as Pe, c as Me, b as Le, U as we, B as ee, d as C, f as te, g as He } from "./BufferResource-PGFg9nzM.mjs";
-import { R as Ve, S as Xe, d as ke } from "./RenderTargetSystem-B4MC9aML.mjs";
+import { D as R, a as F, E as d, J as O, j as B, w as p, g as z, b as ye, S as P, c as S, d as Ne, O as q, aj as Ce, h as g, aa as V, v as y, N, U as M, M as Z, ak as J, al as De, am as Q, an as Ie, ao as Ge, A as Ue, R as Fe, f as A } from "./index-Dst209sN.mjs";
+import { e as Oe, G as Pe, c as Me, b as Le, U as we, B as ee, d as C, f as te, g as He } from "./BufferResource-DXj79gGh.mjs";
+import { R as Ve, S as Xe, d as ke } from "./RenderTargetSystem-bLcPlyxk.mjs";
 function We() {
   const { userAgent: t } = R.get().getNavigator();
   return /^((?!chrome|android).)*safari/i.test(t);

package/dist/{WebGPURenderer-AhApp3po.mjs → WebGPURenderer-EW62UjS_.mjs}

@@ -1,6 +1,6 @@
-import { I as L, a as A, E as l, J as D, l as ce, K as de, D as B, h as C, j as T, i as he, B as k, L as w, w as v, N as y, v as pe, O as le, U as z, Q as M, M as F, V as O, W as fe, X as I, Y as ge, S as W, c as R, A as me, R as _e, f as S } from "./index-D2xCvxdB.mjs";
-import { c as be, u as ye, U as xe, B as Ge, G as Pe, e as Be, l as Se, a as Te, t as Ce } from "./BufferResource-PGFg9nzM.mjs";
-import { R as ve, S as Ue, d as we } from "./RenderTargetSystem-B4MC9aML.mjs";
+import { I as L, a as A, E as l, J as D, l as ce, K as de, D as B, h as C, j as T, i as he, B as k, L as w, w as v, N as y, v as pe, O as le, U as z, Q as M, M as F, V as O, W as fe, X as I, Y as ge, S as W, c as R, A as me, R as _e, f as S } from "./index-Dst209sN.mjs";
+import { c as be, u as ye, U as xe, B as Ge, G as Pe, e as Be, l as Se, a as Te, t as Ce } from "./BufferResource-DXj79gGh.mjs";
+import { R as ve, S as Ue, d as we } from "./RenderTargetSystem-bLcPlyxk.mjs";
 const G = A.for2d();
 class H {
   start(e, t, r) {

package/dist/{browserAll-CG7JAblE.mjs → browserAll-CwYcavqo.mjs}

@@ -1,5 +1,5 @@
-import { x as O, y as Z, P as _, z as Q, E as P, k as ee, w as y, f as D, H as V } from "./index-D2xCvxdB.mjs";
-import "./init-Cy76NrRS.mjs";
+import { x as O, y as Z, P as _, z as Q, E as P, k as ee, w as y, f as D, H as V } from "./index-Dst209sN.mjs";
+import "./init-C3fhQHX9.mjs";
 class te {
   constructor(e) {
     this._lastTransform = "", this._observer = null, this._tickerAttached = !1, this.updateTranslation = () => {

package/dist/{index-D2xCvxdB.mjs → index-Dst209sN.mjs}

@@ -343141,7 +343141,7 @@ const lg = (c) => {
   },
   test: () => !0,
   load: async () => {
-    await import("./browserAll-CG7JAblE.mjs");
+    await import("./browserAll-CwYcavqo.mjs");
   }
 }, iJe = {
   extension: {
@@ -343151,7 +343151,7 @@ const lg = (c) => {
   },
   test: () => typeof self < "u" && self.WorkerGlobalScope !== void 0,
   load: async () => {
-    await import("./webworkerAll-DtX5ptKr.mjs");
+    await import("./webworkerAll-C2bXWxJT.mjs");
   }
 };
 class Bh {
@@ -352363,17 +352363,17 @@ async function ZVe(c) {
   for (let i = 0; i < e.length; i++) {
     const s = e[i];
     if (s === "webgpu" && await jVe()) {
-      const { WebGPURenderer: o } = await import("./WebGPURenderer-AhApp3po.mjs");
+      const { WebGPURenderer: o } = await import("./WebGPURenderer-EW62UjS_.mjs");
       n = o, h = { ...c, ...c.webgpu };
       break;
     } else if (s === "webgl" && KVe(
       c.failIfMajorPerformanceCaveat ?? FG.defaultOptions.failIfMajorPerformanceCaveat
     )) {
-      const { WebGLRenderer: o } = await import("./WebGLRenderer-yx4xYIRO.mjs");
+      const { WebGLRenderer: o } = await import("./WebGLRenderer-CzBvLi02.mjs");
       n = o, h = { ...c, ...c.webgl };
       break;
     } else if (s === "canvas") {
-      const { CanvasRenderer: o } = await import("./CanvasRenderer-BbiN3ivk.mjs");
+      const { CanvasRenderer: o } = await import("./CanvasRenderer-BAPUkyP3.mjs");
       n = o, h = { ...c, ...c.canvasOptions };
       break;
     }
@@ -398968,14 +398968,14 @@ const la0 = /* @__PURE__ */ new Set([
   );
 }), JM = X3(_a0), ma0 = 3, va0 = () => new Worker(new URL(
   /* @vite-ignore */
-  "/assets/createFetchWorker-9mg_hYRk.js",
+  "./assets/createFetchWorker-9mg_hYRk.js",
   import.meta.url
 ), {
   type: "module"
 }), Ua0 = () => new Worker(
   new URL(
     /* @vite-ignore */
-    "/assets/createFetchGenomeAlignWorker-uOhBp_Is.js",
+    "./assets/createFetchGenomeAlignWorker-uOhBp_Is.js",
     import.meta.url
   ),
   { type: "module" }

package/dist/index.es.js

@@ -1,4 +1,4 @@
-import { ap as s, aq as o, ar as r, as as t, at as n, au as i, av as b, aw as l, ax as c, ay as g, az as m, aA as p, aB as S, aC as T, aD as C, aE as d, aF as u, aG as f, aH as y, aI as k, aJ as G, aK as L, aL as M, aM as D, aN as O, aO as F, aP as I, aQ as A, aR as E, aS as _, aT as B, aU as R, aV as h, aW as v, aX as x, aY as N, aZ as P, a_ as H, a$ as w, b0 as U, b1 as q, b2 as z, b3 as J, b4 as V, b5 as X, b6 as j, b7 as K, b8 as Y, b9 as Q, ba as W, bb as Z, bc as $, bd as aa, be as ea, bf as sa, bg as oa, bh as ra, bi as ta, bj as na, bk as ia, bl as ba, bm as la, bn as ca, bo as ga, bp as ma, bq as pa, br as Sa, bs as Ta, bt as Ca, bu as da, bv as ua, bw as fa, bx as ya, by as ka, bz as Ga, bA as La, bB as Ma, bC as Da, bD as Oa, bE as Fa, bF as Ia } from "./index-D2xCvxdB.mjs";
+import { ap as s, aq as o, ar as r, as as t, at as n, au as i, av as b, aw as l, ax as c, ay as g, az as m, aA as p, aB as S, aC as T, aD as C, aE as d, aF as u, aG as f, aH as y, aI as k, aJ as G, aK as L, aL as M, aM as D, aN as O, aO as F, aP as I, aQ as A, aR as E, aS as _, aT as B, aU as R, aV as h, aW as v, aX as x, aY as N, aZ as P, a_ as H, a$ as w, b0 as U, b1 as q, b2 as z, b3 as J, b4 as V, b5 as X, b6 as j, b7 as K, b8 as Y, b9 as Q, ba as W, bb as Z, bc as $, bd as aa, be as ea, bf as sa, bg as oa, bh as ra, bi as ta, bj as na, bk as ia, bl as ba, bm as la, bn as ca, bo as ga, bp as ma, bq as pa, br as Sa, bs as Ta, bt as Ca, bu as da, bv as ua, bw as fa, bx as ya, by as ka, bz as Ga, bA as La, bB as Ma, bC as Da, bD as Oa, bE as Fa, bF as Ia } from "./index-Dst209sN.mjs";
 export {
   s as ACTION_TOOLS,
   o as AppStateLoader,

package/dist/index.umd.js

@@ -1126,7 +1126,7 @@ ${t}`);this.samples=i.slice(9)}_parseGenotypes(e,c){const h=c.split("	"),t={},i=
  * depending on the file.
  *
  * @license MIT
- */class EY{constructor(e){rr(this,"url");rr(this,"bigWigPromise");rr(this,"usingProxy",!1);rr(this,"chromNamingCache",null);this.url=e,this.bigWigPromise=this.loadBigWig(e)}async loadBigWig(e){return new Promise((c,h)=>{iY(new N2(e),(t,i)=>{i?h(i):c(t)})})}switchToProxy(){this.usingProxy=!0,this.chromNamingCache=null,this.bigWigPromise=this.loadBigWig(iQr(this.url))}async detectChromosomeNaming(){if(this.chromNamingCache!==null)return this.chromNamingCache;try{const e=await this.bigWigPromise,c=Object.keys(e.chromsToIDs||{})[0];return c?(this.chromNamingCache=!Wh[c]&&Object.values(Wh).some(h=>h.has(c)),this.chromNamingCache):(this.chromNamingCache=!1,!1)}catch{return this.usingProxy?(console.error("Error detecting chromosome naming. Check URL and file format."),null):(this.switchToProxy(),this.detectChromosomeNaming())}}async getData(e,c,h){const t=h.ensemblStyle??await this.detectChromosomeNaming(),i=async()=>{const a=await this.bigWigPromise,l=h.zoomLevel===void 0||h.zoomLevel===pwr.AUTO?this._getMatchingZoomLevel(a,c):Number.parseInt(h.zoomLevel);return e.map(_=>{let U=t?_.chr.replace("chr",""):_.chr;return U==="M"&&(U="MT"),this._getDataForChromosome({..._,chr:U},a,l)})};let s;try{s=await Promise.all(await i())}catch(a){if(!this.usingProxy)this.switchToProxy(),s=await Promise.all(await i());else throw a}const o=s.flat();for(let a of o)a.min-=1;return t&&e.forEach((a,l)=>{s[l].forEach(_=>_.chr=a.chr)}),o}_getMatchingZoomLevel(e,c){if(!c)return-1;if(e.zoomLevels.length===1)return 0;let t=e.zoomLevels.slice().sort((i,s)=>s.reduction-i.reduction).find(i=>i.reduction<c);return e.zoomLevels.findIndex(i=>i===t)}_getDataForChromosome(e,c,h){const t=e.start+1,i=e.end;return new Promise((s,o)=>{try{h===-1?c.readWigData(e.chr,t,i,s):c.getZoomedView(h).readWigData(e.chr,t,i,s)}catch(a){o(a)}})}}function sQr(n){let e=[];for(let t of n._navContext._features){let i=new Ke(t.locus.chr,t.locus.start,t.locus.end);e.push(new on(t.name,i))}let c=new si(n._navContext._name,e);return new f0(c,n._startBase,n._endBase)}const mS={WashU:"https://lambda.epigenomegateway.org/v3"};let ph={};const uS={geneannotation:async function(e){let c,h;const t=e.trackModel;t.apiConfig&&t.apiConfig.genome?c=t.apiConfig.genome:c=e.genomeName,t.apiConfig&&t.apiConfig.format in mS?h=mS[`${t.apiConfig.format}`]:h=mS.WashU;try{const i=e.nav.map(async o=>{const a=`${h}/${c}/genes/${e.name}/queryRegion?chr=${o.chr}&start=${o.start}&end=${o.end}`;try{const l=await fetch(a,{method:"GET",mode:"cors",cache:"default",credentials:"omit"});if(!l.ok)throw new Error(`HTTP error! status: ${l.status}`);return l.json()}catch(l){throw console.error(`Error fetching data for region ${o.chr}:${o.start}-${o.end}:`,l),l}});return(await Promise.all(i)).flat()}catch(i){throw console.error("Error in refGeneFetch:",i),i}},snp:async function(e){const c={hg19:"https://grch37.rest.ensembl.org/overlap/region/human",hg38:"https://rest.ensembl.org/overlap/region/human"},h=e.genomeName in c?c[`${e.genomeName}`]:null;if(!h)return[];const t={"Content-Type":"application/json"};try{const i=e.nav.map(async o=>{if(o.end-o.start>3e4)throw new Error("Please zoom in to see content. ");const a=`${h}/${o.chr.substr(3)}:${o.start}-${o.end}?content-type=application%2Fjson&feature=variation`;try{const l=await fetch(a,{headers:t,mode:"cors",cache:"default"});if(!l.ok)throw new Error(`HTTP error! status: ${l.status}`);return l.json()}catch(l){throw o.end-o.start>3e4?new Error("Please zoom in to see content. "):(console.error(`Error fetching SNP data for region ${o.chr}:${o.start}-${o.end}: `,l),l)}});return(await Promise.all(i)).flat()}catch(i){throw console.error("Error in snpFetch:",i),i}},bed:async function(e){return rc(e,"bedOrTabix")},bedcolor:async function(e){return rc(e,"bedOrTabix")},omeroidr:async function(e){return rc(e,"bedOrTabix")},bedgraph:async function(e){return rc(e,"bedOrTabix")},qbed:async function(e){return rc(e,"bedOrTabix")},dbedgraph:async function(e){return rc(e,"bedOrTabix")},boxplot:async function(e){return rc(e,"big")},modbed:async function(e){return rc(e,"bedOrTabix")},jaspar:async function(e){return rc(e,"jaspar")},bigbed:async function(e){return rc(e,"bigbed")},bigbedcolor:async function(e){return rc(e,"bigbed")},refbed:async function(e){return rc(e,"bedOrTabix")},matplot:async function(e){return rc(e,"bedOrTabix")},bigwig:async function(e){return rc(e,"big")},categorical:async function(e){return rc(e,"bedOrTabix")},longrange:async function(e){return rc(e,"bedOrTabix")},dynseq:async function(e){return rc(e,"big")},repeatmasker:async function(e){return rc(e,"repeatmasker")},rmskv2:async function(e){return rc(e,"rmskv2")},biginteract:async function(e){return rc(e,"big")},methylc:async function(e){return rc(e,"bedOrTabix")},genomealign:function(e){return rc(e,"bedOrTabix")},vcf:function(e){return rc(e,"vcf")},hic:function(e){return rc(e,"hic")},bam:function(e){return rc(e,"bam")}};async function rc(n,e){const c=n.trackModel.indexUrl||null;let h=null;if(!ph[n.trackModel.url])if(e==="bedOrTabix")ph[n.trackModel.url]=new yYr(n.trackModel.url,c);else if(e==="vcf")ph[n.trackModel.url]=new MYr(n.trackModel.url,c);else if(e==="bigbed")ph[n.trackModel.url]=new EY(n.trackModel.url);else if(e==="big")ph[n.trackModel.url]=new aS(n.trackModel.url);else if(e==="repeatmasker")ph[n.trackModel.url]=new EY(n.trackModel.url);else if(e==="rmskv2")ph[n.trackModel.url]=new aS(n.trackModel.url);else if(e==="jaspar")ph[n.trackModel.url]=new aS(n.trackModel.url);else if(e==="hic")ph[n.trackModel.url]=new Zv(n.trackModel.url);else if(e==="bam")ph[n.trackModel.url]=new wY(n.trackModel.url);else throw new Error(`Unsupported track type: ${e}. `);h=ph[n.trackModel.url];try{if(h){if(n.trackModel.options.trackType=n.trackModel.type,e==="jaspar"&&n.basesPerPixel>2)throw new Error("Please zoom in to see content. ");if((e==="repeatmasker"||e==="rmskv2")&&n.basesPerPixel>1e3)throw new Error("Please zoom in to see content. ");return e==="bigbed"?h.getData(n.nav,n.basesPerPixel,n.trackModel.options).then(t=>(ph[n.trackModel.url]=null,t)).catch(t=>{throw ph[n.trackModel.url]=null,t}):e==="hic"?h.getData(sQr(n.visRegion),n.basesPerPixel,n.trackModel.options).then(t=>{const i=ph[n.trackModel.url].getFileInfo();return{data:t,fileInfos:i}}).catch(t=>{throw ph[n.trackModel.url]=null,t}):h.getData(n.nav,n.basesPerPixel,n.trackModel.options).then(t=>(ph[n.trackModel.url]=null,t)).catch(t=>{throw ph[n.trackModel.url]=null,t})}}catch(t){throw h=null,t}}const QU=1200,oQr=P.memo(function({genomeName:e,tracks:c,viewRegion:h,windowWidth:t}){const i=P.useRef(e),[s,o]=P.useState(null),[a,l]=P.useState(null),[_,U]=P.useState(!1),m=P.useRef({}),u=P.useRef(null);function d(){l(null)}function C(){return e?p6(e):null}function A(M){return h||(M!=null&&M.defaultRegion?M.defaultRegion:null)}function f(M){return M?!c||!Array.isArray(c)||c.length===0?"Invalid data source":null:"Invalid region"}function E(M,H){var O;const R=((O=hn[M])==null?void 0:O.defaultOptions)||{};return H?{...R,...H,packageVersion:!0,trackManagerRef:Q_.has(M)?u.current:null}:{...R,packageVersion:!0,trackManagerRef:Q_.has(M)?u.current:null}}function y(M,H){let R=[];return customElements&&M.defaultTracks&&!c?R=M.defaultTracks.map((O,q)=>{if(O.type)return O.id=`${H}-${q}`,O.options=E(O.type,O.options?O.options:{}),O}).filter(Boolean):R=c.map((O,q)=>new Tr({type:O.type,name:O.name?O.name:O.type==="ruler"?"ruler":`track ${q+1}`,url:O.url,options:E(O.type,O.options),id:ai()})),R.forEach(O=>{var q,j;O.type==="hic"?m.current[`${O.id}`]||(m.current[`${O.id}`]=new Zv(O.url)):O.type==="dynamichic"?(q=O.tracks)==null||q.map((lr,Dr)=>{m.current[`${O.id}subtrack${Dr}`]=new Zv(O.tracks[Dr].url)}):O.type in{matplot:"",dynamic:"",dynamicbed:"",dynamiclongrange:""}?(j=O.tracks)==null||j.map((lr,Dr)=>{lr.id=`${O.id}subtrack${Dr}`}):O.type==="bam"&&(m.current[`${O.id}`]=new wY(O.url))}),R}function w(M,H,R,O){var lr,Dr;const q=M.navContext,j=M.navContext.parse(H);return{genomeConfig:M,primaryGenName:((Dr=(lr=M.genome)==null?void 0:lr.getName)==null?void 0:Dr.call(lr))||e,basesByPixel:R/(j.end-j.start),genomicLoci:[Ke.parse(H)],trackModelArr:O,viewWindow:new Re(0,R),visData:{visWidth:R,visRegion:new f0(q,j.start,j.end),viewWindow:new Re(0,R),viewWindowRegion:new f0(q,j.start,j.end)}}}async function x(M,H,R){if(R)return R.map(q=>{var lr;const j={viewWindow:M.viewWindow,startWindow:0,visRegion:M.visData.visRegion,visWidth:H};return{genomeName:M.primaryGenName,genesArr:q.genesArr,trackState:j,windowWidth:H,configOptions:q.trackModel.options,basesByPixel:M.basesByPixel,trackModel:q.trackModel,getGenePadding:(lr=hn[`${q.trackModel.type}`])==null?void 0:lr.getGenePadding,ROW_HEIGHT:hn[`${q.trackModel.type}`].ROW_HEIGHT,genomeConfig:M.genomeConfig}});{const O=await wYr([M]),q=[];return 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ye={...ae,...ie[de]};$t({configOptions:ye,trackModel:oe,id:de,trackIdx:wr.current.tracks.findIndex(We=>`${We.id}`===de)})}catch{}}}}),wr.current.viewRegion._startBase?wr.current.viewRegion._startBase:nr.current,wr.current.viewRegion._endBase?wr.current.viewRegion._endBase:Q.current+X.current;const De=l0.current!==null?Zr.cloneDeep(l0.current):{viewWindow:new Re(ir.current,ir.current*2),dataIdx:Qr.current};if(vr==="normalization"||vr==="binSize")n1(Qr.current);else if(vr!=="legendFontColor"&&vr!=="label"){De.tracksToDrawId=ie,(UQr.has(vr)||Ce)&&$i(De.viewWindow,Qr.current,De.tracksToDrawId);const ne=De.tracksToDrawId||{};Object.keys(ne).length>0&&G1({dataIdx:Qr.current,viewWindow:De.viewWindow,groupScale:Ne.current.trackStates[Qr.current].trackState.groupScale,trackToDrawId:ne})}_(Zr.cloneDeep(wr.current.tracks))}function Wi(vr,kr,yr,ie,Ce){Pe.current={left:vr,top:kr,viewportX:ie,viewportY:Ce},Cc(Go(yr))}function Mc(vr,kr){if(vr.shiftKey){const yr=kr;let ie;Br.current[yr]===""?ie=!1:ie=!0,ie?Br.current[yr]="":delete Br.current[yr];const Ce=wr.current.tracks.map(De=>De.id in Br.current?new Tr({...De,isSelected:!0}):new Tr({...De,isSelected:!1}));if(wr.current.tracks=Ce,O.current){const De=p0.map(ne=>({...ne,trackModel:Ce.find(xe=>xe.id===ne.trackModel.id)||ne.trackModel}));Cn(De)}_(Ce),xn&&Object.keys(Br.current).length>0?Wi(vr.pageX,vr.pageY,yr,vr.clientX,vr.clientY):Cc(null)}else{const yr=kr;yr&&Object.keys(Br.current).length>0&&!(yr in Br.current)&&(Ri(),_(Zr.cloneDeep(wr.current.tracks)),Cc(null))}}function Oh(vr,kr){if(vr.preventDefault(),kr.trackModel.id in Br.current)Wi(vr.pageX,vr.pageY,kr.trackModel.id,vr.clientX,vr.clientY);else{Ri();const yr=wr.current.tracks.map(ie=>ie.id===kr.trackModel.id?new Tr({...ie,isSelected:!0}):ie);if(wr.current.tracks=yr,O.current){const ie=p0.map(Ce=>({...Ce,trackModel:yr.find(De=>De.id===Ce.trackModel.id)||Ce.trackModel}));Cn(ie)}Br.current[`${kr.trackModel.id}`]="",_(yr),Wi(vr.pageX,vr.pageY,kr.trackModel.id,vr.clientX,vr.clientY)}}const Uh=P.useCallback(()=>{Cc(null)},[]),Ri=P.useCallback(()=>{Object.keys(Br.current).length!==0&&(wr.current.tracks.forEach(vr=>{vr.isSelected=!1}),Br.current={})},[_]),Rs=P.useCallback(vr=>{const kr=[];for(let yr=0;yr<wr.current.tracks.length;yr++){const ie=wr.current.tracks[yr];if(!vr.includes(String(ie.id))){const Ce=Zr.cloneDeep(ie);Ce.changeConfigInitial=!0,kr.push(Ce)}}wr.current.tracks=kr;for(const yr of vr)yr in Br.current&&delete Br.current[yr];_(Zr.cloneDeep(wr.current.tracks)),vr.length>0&&Uh()},[_,Uh]);function Lt(vr,kr){let yr=null;kr==="matplot"&&(yr=new Tr({id:ai(),type:"matplot",name:"matplot wrap",tracks:vr})),yr&&(wr.current.tracks=[...wr.current.tracks,yr],_(Zr.cloneDeep(wr.current.tracks)),Uh())}async function Oi(vr=0,kr,yr){if(!q.current)return;let ie,Ce=[],De=[],ne=[],xe,ue,de;if(vr===1){ne=[{start:_r.current-X.current*2,end:er.current},{start:_r.current-X.current,end:er.current+X.current},{start:_r.current,end:er.current+X.current*2}],De.push({start:_r.current-X.current,end:_r.current}),De.push({start:er.current-X.current,end:er.current}),De.push({start:er.current,end:er.current+X.current}),H0.current=[_r.current-X.current,_r.current,_r.current+X.current],ie=new f0(q.current.navContext,_r.current,er.current);const We=new f0(q.current.navContext,_r.current-X.current,er.current+X.current),He=ir.current/ie.getWidth(),n0=We.getWidth()*He,Ge=ie.getContextCoordinates(),S=We.getContextCoordinates(),N=Ge.start-S.start,F=S.end-Ge.end,G=N*He,hr=F*He;xe={visWidth:E&&X.current===q.current.navContext._totalBases?n0-hr:n0,visRegion:We,viewWindow:E&&X.current===q.current.navContext._totalBases?new Re(0,n0-hr):new Re(G,n0-hr),viewWindowRegion:ie},ue=q.current.navContext.getFeaturesInInterval(_r.current-X.current,er.current+X.current).map((ar,Nr)=>ar.getLocus()),_r.current=_r.current-X.current*2,er.current=er.current+X.current*2,de=_Qr(De,q.current)}else if(kr==="right"){ie=new f0(q.current.navContext,er.current-X.current,er.current),Ce=q.current.navContext.getFeaturesInInterval(er.current-X.current,er.current).map((Lr,Kr)=>Lr.getLocus());let He=q.current.navContext.getFeaturesInInterval(er.current-X.current*2,er.current-X.current),n0=new f0(q.current.navContext,er.current-X.current*2,er.current-X.current);de=He.map((Lr,Kr)=>Lr.getLocus());const Ge=new f0(q.current.navContext,er.current-X.current*3,er.current),S=ir.current/n0.getWidth(),N=Ge.getWidth()*S,F=n0.getContextCoordinates(),G=Ge.getContextCoordinates(),hr=F.start-G.start,tr=G.end-F.end,ar=hr*S,Nr=tr*S;xe={visWidth:E&&X.current===q.current.navContext._totalBases?Nr:N,visRegion:Ge,viewWindow:E&&X.current===q.current.navContext._totalBases?new Re(0,Nr):new Re(ar,N-Nr),viewWindowRegion:n0},ue=q.current.navContext.getFeaturesInInterval(er.current-X.current*3,er.current).map((Lr,Kr)=>Lr.getLocus()),H0.current.push(er.current-X.current),er.current=er.current+X.current}else{ie=new f0(q.current.navContext,_r.current,_r.current+X.current),Ce=q.current.navContext.getFeaturesInInterval(_r.current,_r.current+X.current).map((Lr,Kr)=>Lr.getLocus());let He=q.current.navContext.getFeaturesInInterval(_r.current+X.current,_r.current+X.current*2),n0=new f0(q.current.navContext,_r.current+X.current,_r.current+X.current*2);de=He.map((Lr,Kr)=>Lr.getLocus());const Ge=new f0(q.current.navContext,_r.current,_r.current+X.current*3),S=ir.current/n0.getWidth(),N=Ge.getWidth()*S,F=n0.getContextCoordinates(),G=Ge.getContextCoordinates(),hr=F.start-G.start,tr=G.end-F.end,ar=hr*S,Nr=tr*S;xe={visWidth:E&&X.current===q.current.navContext._totalBases?Nr:N,visRegion:Ge,viewWindow:E&&X.current===q.current.navContext._totalBases?new Re(0,Nr):new Re(ar,N-Nr),viewWindowRegion:n0},ue=q.current.navContext.getFeaturesInInterval(_r.current,_r.current+X.current*3).map((Lr,Kr)=>Lr.getLocus()),H0.current.unshift(_r.current),_r.current=_r.current-X.current}let oe={};oe[`${q.current.genome.getName()}`]={genomicLoci:Ce,regionExpandLoci:ne[1]},oe[`${q.current.genome.getName()}`].primaryVisData=xe;let ae=Se.current,ye={primaryGenName:q.current.genome.getName(),initial:vr,side:kr,xDist:ae,genomicFetchCoord:oe,regionLoci:de,visData:xe,regionExpandLoci:ue,viewWindow:yr,initVisData:vr?ne.map((We,He)=>{var pr,Lr,Kr;const n0=new f0((pr=q.current)==null?void 0:pr.navContext,De[He].start,De[He].end),Ge=new f0((Lr=q.current)==null?void 0:Lr.navContext,We.start,We.end),S=ir.current/n0.getWidth(),N=Ge.getWidth()*S,F=n0.getContextCoordinates(),G=Ge.getContextCoordinates(),hr=F.start-G.start,tr=G.end-F.end,ar=hr*S,Nr=tr*S;return{visWidth:E&&X.current===((Kr=q.current)==null?void 0:Kr.navContext._totalBases)?N-Nr:N,visRegion:Ge,viewWindow:new Re(ar,N-Nr),viewWindowRegion:n0}}):""};eqr({trackState:ye,globalTrackState:Ne})}const Os=async vr=>{await Promise.all(vr.data.map(async kr=>{var De;const yr=kr.trackToDrawId?kr.trackToDrawId:{},ie=kr.trackDataIdx;if(Ne.current.trackStates[ie]===void 0)return Promise.resolve();const Ce={...Ne.current.trackStates[ie].trackState,primaryGenName:(De=q.current)==null?void 0:De.genome.getName()};await Promise.all(kr.fetchResults.map(async ne=>{yr[`${ne.id}`]="",await qs({trackState:Ce,result:ne.result,id:ne.id,trackType:ne.trackModel.type?ne.trackModel.type:ne.name?ne.name:"",metadata:ne.metadata,trackModel:ne.trackModel,curFetchNav:ne.name==="bam"?ne.curFetchNav:"",missingIdx:kr.missingIdx,trackDataIdx:kr.trackDataIdx,fileInfos:ne.fileInfos,errorType:ne.errorType})})).then(()=>{const ne=Qr.current,xe=[ne-1,ne,ne+1],ue={};for(let de in yr){const oe=wr.current.caches[de];if(oe)if(oe.error)ue[de]=!1;else if(j.current||oe.useExpandedLoci||!oe.usePrimaryNav)(oe[ne]&&oe[ne].dataCache||!oe.usePrimaryNav)&&(ue[de]=!1);else{let ae=!0;for(let ye of xe)if(!oe[ye]||!oe[ye].dataCache){ae=!1;break}ae&&(ue[de]=!1)}}Object.keys(ue).length>0&&(R.current.key!==ne&&(R.current.key=ne,R.current.done={},R.current.groups={}),nc({trackDataIdx:kr.trackDataIdx,initial:kr.initial,trackToDrawId:ue,missingIdx:kr.missingIdx,curDataIdx:kr.trackDataIdx}),j1())})})).then(()=>{var yr,ie;const kr=(yr=x.current)==null?void 0:yr.worker;if(kr){const Ce=(ie=vr.data[0])==null?void 0:ie._workerIdx;Ce!==void 0&&kr[Ce]&&(kr[Ce].processingCount=Math.max(0,kr[Ce].processingCount-1))}}).catch(kr=>{var ie,Ce;console.error("Error in createInfiniteOnMessage:",kr);const yr=(ie=x.current)==null?void 0:ie.worker;if(yr){const De=(Ce=vr.data[0])==null?void 0:Ce._workerIdx;De!==void 0&&yr[De]&&(yr[De].processingCount=Math.max(0,yr[De].processingCount-1))}})},Ko=vr=>{var De;const kr=vr.data.navData.trackDataIdx,yr={...Ne.current.trackStates[kr].trackState,primaryGenName:(De=q.current)==null?void 0:De.genome.getName(),...vr.data.navData},ie=vr.data.navData.fetchNewRegion,Ce=vr.data.navData.dragX;Promise.all(Object.values(vr.data.fetchResults).map(ne=>qs({trackState:yr,result:ne.records,id:ne.id,trackType:ne.trackModel.type,metadata:ne.metadata,trackModel:ne.trackModel,curFetchNav:ne.name==="bam"?ne.curFetchNav:"",missingIdx:yr.missingIdx,trackDataIdx:vr.data.navData.trackDataIdx,queryGenome:ne.query,errorType:ne.errorType}))).then(()=>{var ne,xe;try{if(Ne.current.trackStates[yr.missingIdx?yr.missingIdx:yr.trackDataIdx].trackState.startWindow=vr.data.navData.regionSetStartBp!==0?yr.genomicFetchCoord[(ne=q.current)==null?void 0:ne.genome.getName()].primaryVisData.viewWindow.start:0,Ne.current.trackStates[yr.missingIdx?yr.missingIdx:yr.trackDataIdx].trackState.genomicFetchCoord=yr.genomicFetchCoord,Ne.current.trackStates[yr.missingIdx?yr.missingIdx:yr.trackDataIdx].trackState.visWidth=yr.genomicFetchCoord[(xe=q.current)==null?void 0:xe.genome.getName()].primaryVisData.visWidth,Lh(yr.missingIdx)){const ue={};for(const de of wr.current.tracks)de.type==="genomealign"&&(ue[de.id]=!1);if(yr.fetchAfterGenAlignTracks.length>0){for(const de of yr.fetchAfterGenAlignTracks)de.genomicFetchCoord=yr.genomicFetchCoord;R.current.key!==yr.trackDataIdx&&(R.current.key=yr.trackDataIdx,R.current.done={},R.current.groups={}),(ie||Ce===Se.current)&&(nc({curDataIdx:yr.trackDataIdx,isInitial:void 0,trackToDrawId:ue,missingIdx:yr.missingIdx,trackDataIdx:yr.trackDataIdx}),K1(yr.fetchAfterGenAlignTracks))}else nc({curDataIdx:yr.trackDataIdx,isInitial:0,trackToDrawId:ue,missingIdx:yr.missingIdx})}wh()}catch{R.current.key!==yr.trackDataIdx&&(R.current.key=yr.trackDataIdx,R.current.done={},R.current.groups={});const de={};for(const oe in wr.current.caches)wr.current.caches[oe].trackType==="genomealign"&&wr.current.caches[oe].error&&(de[oe]=!1);yr.fetchAfterGenAlignTracks.length>0&&(yr.genomicFetchCoord=null,K1(yr.fetchAfterGenAlignTracks)),nc({curDataIdx:yr.trackDataIdx,trackToDrawId:de})}}).catch(ne=>{console.error("Error in createGenomeAlignOnMessage:",ne),R.current.key!==yr.trackDataIdx&&(R.current.key=yr.trackDataIdx,R.current.done={},R.current.groups={});const xe={};for(const ue in wr.current.caches)wr.current.caches[ue].trackType==="genomealign"&&wr.current.caches[ue].error&&(xe[ue]=!1);yr.fetchAfterGenAlignTracks.length>0&&(yr.genomicFetchCoord=null,K1(yr.fetchAfterGenAlignTracks)),nc({curDataIdx:yr.trackDataIdx,trackToDrawId:xe})})};function n1(vr){var ne;if(!q.current)return;const kr={};let yr=!1;const ie=vr,Ce=[vr-1,vr,vr+1];let De=!1;for(const[xe,ue]of Object.entries(wr.current.caches)){let de=!0;for(const oe of Ce)if(oe in ue||(ue.useExpandedLoci||!ue.usePrimaryNav)&&oe!==ie||(wr.current.caches[xe][oe]={}),oe in ue){if((ue.useExpandedLoci||!ue.usePrimaryNav)&&oe!==ie)continue;const ae=ue.trackType==="genomealign",ye=!("dataCache"in ue[oe])||(ae||!ue.usePrimaryNav)&&!j.current;ie===oe&&ae&&ye?(De=!0,de=!1,yr=!0):ye&&(de=!1,yr=!0)}de&&(kr[xe]=!1)}if(yr){const xe=[];for(const ue of Ce){let de=[],oe=ue in Ne.current.trackStates?(ne=Ne.current.trackStates[ue])==null?void 0:ne.trackState:"";for(const ae in wr.current.caches){const ye=wr.current.caches[ae];if(!((ye.useExpandedLoci||!ye.usePrimaryNav)&&ue!==ie||ye.trackType==="genomealign")&&ue in ye&&(!("dataCache"in ye[ue])||!ye.usePrimaryNav&&!j.current)){let We=wr.current.tracks.find(He=>He.id===Number(ae)||He.id===ae);if(We){wr.current.caches[ae][ue].dataCache=null;const He=Zr.cloneDeep(We);if(He.error=ye.error,He.shouldPlaceRegion=ye.firstLoad&&ye.usePrimaryNav&&!ye.useExpandedLoci,He.shouldPlaceRegion&&ue!==ie)continue;de.push(He)}}}if(de.length>0){const ae=q.current.genome.getName();xe.push({primaryGenName:ae,trackModelArr:de,visData:oe.visData?oe.visData:oe.genomicFetchCoord?oe.genomicFetchCoord[`${ae}`].primaryVisData:"",genomicLoci:oe.regionLoci,visRegion:oe.visRegion?oe.visRegion:oe.genomicFetchCoord?oe.genomicFetchCoord[`${ae}`].primaryVisData.visRegion:"",regionExpandLoci:oe.regionExpandLoci,useFineModeNav:j.current,windowWidth:ir.current,bpRegionSize:X.current,trackDataIdx:ie,missingIdx:ue,genomicFetchCoord:oe==null?void 0:oe.genomicFetchCoord})}}for(const ue in wr.current.caches)wr.current.caches[ue].firstLoad=!1;if(s0.current&&De){const ue=wr.current.tracks.filter((ye,We)=>ye.type==="genomealign"),de=Ne.current.trackStates[ie].trackState,ae=q.current.navContext.getFeaturesInInterval(V.current,V.current+X.current).map((ye,We)=>ye.getLocus());Rt({trackToFetch:ue,visData:de.visData,genomicLoci:de.regionLoci,viewWindowGenomicLoci:ae,primaryGenName:q.current.genome.getName(),trackModelArr:ue,regionExpandLoci:de.regionExpandLoci,useFineModeNav:j.current,windowWidth:ir.current,bpRegionSize:X.current,fetchAfterGenAlignTracks:xe,trackDataIdx:ie,missingIdx:ie,fetchNewRegion:!0})}else K1(xe)}Object.keys(kr).length>0&&(!De||s0.current&&!j.current)&&!O.current&&Qr.current!==R.current.key&&(R.current.key=Qr.current,R.current.done={},R.current.groups={},nc({curDataIdx:Qr.current,trackToDrawId:{...kr}}))}function c1(){const vr=performance.memory;return vr?vr.usedJSHeapSize/(1024*1024)>2e3:!1}function nc(vr){var kr,yr,ie,Ce;for(const De in wr.current.caches){const ne=wr.current.caches[De],xe=Object.keys(ne).filter(oe=>Lh(oe)).map(Number).sort((oe,ae)=>oe-ae);let ue,de;ne.trackType in $X||!ne.usePrimaryNav?(ue=Qr.current-(c1()?1:2),de=Qr.current+(c1()?1:2)):(ue=Qr.current-(c1()?2:3),de=Qr.current+(c1()?2:3));for(const oe of xe)(oe<ue||oe>de)&&wr.current.caches[De][oe]&&(wr.current.caches[De][oe]={})}if(vr&&Object.keys(vr.trackToDrawId).length>0){let De;const ne=(kr=q.current)==null?void 0:kr.genome.getName();if(j.current&&Ne.current.trackStates[vr.curDataIdx].trackState.genomicFetchCoord){const ue={...Ne.current.trackStates[vr.curDataIdx].trackState}.genomicFetchCoord[ne].primaryVisData,de=ue.viewWindow,oe=Ne.current.viewWindow;let ae;oe?(ae=oe.start,oe.end):ae=0;let ye;const We=Wo(ue.viewWindowRegion);ye=Ws(Wo(We),Se.current%ir.current-(x0.current==="left"?ir.current:0)),a(ye.start,ye.end);const He=ae-ir.current+de.start,n0=He+ir.current;De=new Re(He,n0)}else E&&X.current===q.current.navContext._totalBases?De=new Re(0,ir.current):De=Ne.current.viewWindow;for(const xe in vr.trackToDrawId){let ue,de;if(wr.current.globalConfig&&xe in wr.current.globalConfig?ue=wr.current.globalConfig[xe].configOptions:(de=Gt(xe),de&&hn[`${wr.current.caches[xe].trackType}`]&&(ue={...hn[`${wr.current.caches[xe].trackType}`].defaultOptions,...de.options})),ue&&ue.group&&wr.current.caches[xe].trackType in jX){const oe=ue.group;R.current.groups[`${oe}`]||(R.current.groups[`${oe}`]={}),R.current.groups[`${oe}`][`${xe}`]=vr.trackToDrawId[`${xe}`]}else $i(De,vr.curDataIdx,{[xe]:!1}),R.current.done[`${xe}`]=vr.trackToDrawId[`${xe}`]}for(const xe in R.current.groups){const ue=Object.keys(R.current.groups[`${xe}`]),de=new Set(wr.current.tracks.filter(ae=>ae.options&&String(ae.options.group)===xe).map(ae=>ae.id));let oe=!0;for(let ae of ue){if(!de.has(ae)){oe=!1;break}if((Ce=(ie=(yr=R.current)==null?void 0:yr.groups)==null?void 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q=M.navContext,j=M.navContext.parse(H);return{genomeConfig:M,primaryGenName:((Dr=(lr=M.genome)==null?void 0:lr.getName)==null?void 0:Dr.call(lr))||e,basesByPixel:R/(j.end-j.start),genomicLoci:[Ke.parse(H)],trackModelArr:O,viewWindow:new Re(0,R),visData:{visWidth:R,visRegion:new f0(q,j.start,j.end),viewWindow:new Re(0,R),viewWindowRegion:new f0(q,j.start,j.end)}}}async function x(M,H,R){if(R)return R.map(q=>{var lr;const j={viewWindow:M.viewWindow,startWindow:0,visRegion:M.visData.visRegion,visWidth:H};return{genomeName:M.primaryGenName,genesArr:q.genesArr,trackState:j,windowWidth:H,configOptions:q.trackModel.options,basesByPixel:M.basesByPixel,trackModel:q.trackModel,getGenePadding:(lr=hn[`${q.trackModel.type}`])==null?void 0:lr.getGenePadding,ROW_HEIGHT:hn[`${q.trackModel.type}`].ROW_HEIGHT,genomeConfig:M.genomeConfig}});{const O=await wYr([M]),q=[];return 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ye={...ae,...ie[de]};$t({configOptions:ye,trackModel:oe,id:de,trackIdx:wr.current.tracks.findIndex(We=>`${We.id}`===de)})}catch{}}}}),wr.current.viewRegion._startBase?wr.current.viewRegion._startBase:nr.current,wr.current.viewRegion._endBase?wr.current.viewRegion._endBase:Q.current+X.current;const De=l0.current!==null?Zr.cloneDeep(l0.current):{viewWindow:new Re(ir.current,ir.current*2),dataIdx:Qr.current};if(vr==="normalization"||vr==="binSize")n1(Qr.current);else if(vr!=="legendFontColor"&&vr!=="label"){De.tracksToDrawId=ie,(UQr.has(vr)||Ce)&&$i(De.viewWindow,Qr.current,De.tracksToDrawId);const ne=De.tracksToDrawId||{};Object.keys(ne).length>0&&G1({dataIdx:Qr.current,viewWindow:De.viewWindow,groupScale:Ne.current.trackStates[Qr.current].trackState.groupScale,trackToDrawId:ne})}_(Zr.cloneDeep(wr.current.tracks))}function Wi(vr,kr,yr,ie,Ce){Pe.current={left:vr,top:kr,viewportX:ie,viewportY:Ce},Cc(Go(yr))}function Mc(vr,kr){if(vr.shiftKey){const yr=kr;let ie;Br.current[yr]===""?ie=!1:ie=!0,ie?Br.current[yr]="":delete Br.current[yr];const Ce=wr.current.tracks.map(De=>De.id in Br.current?new Tr({...De,isSelected:!0}):new Tr({...De,isSelected:!1}));if(wr.current.tracks=Ce,O.current){const De=p0.map(ne=>({...ne,trackModel:Ce.find(xe=>xe.id===ne.trackModel.id)||ne.trackModel}));Cn(De)}_(Ce),xn&&Object.keys(Br.current).length>0?Wi(vr.pageX,vr.pageY,yr,vr.clientX,vr.clientY):Cc(null)}else{const yr=kr;yr&&Object.keys(Br.current).length>0&&!(yr in Br.current)&&(Ri(),_(Zr.cloneDeep(wr.current.tracks)),Cc(null))}}function Oh(vr,kr){if(vr.preventDefault(),kr.trackModel.id in Br.current)Wi(vr.pageX,vr.pageY,kr.trackModel.id,vr.clientX,vr.clientY);else{Ri();const yr=wr.current.tracks.map(ie=>ie.id===kr.trackModel.id?new Tr({...ie,isSelected:!0}):ie);if(wr.current.tracks=yr,O.current){const ie=p0.map(Ce=>({...Ce,trackModel:yr.find(De=>De.id===Ce.trackModel.id)||Ce.trackModel}));Cn(ie)}Br.current[`${kr.trackModel.id}`]="",_(yr),Wi(vr.pageX,vr.pageY,kr.trackModel.id,vr.clientX,vr.clientY)}}const Uh=P.useCallback(()=>{Cc(null)},[]),Ri=P.useCallback(()=>{Object.keys(Br.current).length!==0&&(wr.current.tracks.forEach(vr=>{vr.isSelected=!1}),Br.current={})},[_]),Rs=P.useCallback(vr=>{const kr=[];for(let yr=0;yr<wr.current.tracks.length;yr++){const ie=wr.current.tracks[yr];if(!vr.includes(String(ie.id))){const Ce=Zr.cloneDeep(ie);Ce.changeConfigInitial=!0,kr.push(Ce)}}wr.current.tracks=kr;for(const yr of vr)yr in Br.current&&delete Br.current[yr];_(Zr.cloneDeep(wr.current.tracks)),vr.length>0&&Uh()},[_,Uh]);function Lt(vr,kr){let yr=null;kr==="matplot"&&(yr=new Tr({id:ai(),type:"matplot",name:"matplot wrap",tracks:vr})),yr&&(wr.current.tracks=[...wr.current.tracks,yr],_(Zr.cloneDeep(wr.current.tracks)),Uh())}async function Oi(vr=0,kr,yr){if(!q.current)return;let ie,Ce=[],De=[],ne=[],xe,ue,de;if(vr===1){ne=[{start:_r.current-X.current*2,end:er.current},{start:_r.current-X.current,end:er.current+X.current},{start:_r.current,end:er.current+X.current*2}],De.push({start:_r.current-X.current,end:_r.current}),De.push({start:er.current-X.current,end:er.current}),De.push({start:er.current,end:er.current+X.current}),H0.current=[_r.current-X.current,_r.current,_r.current+X.current],ie=new f0(q.current.navContext,_r.current,er.current);const We=new f0(q.current.navContext,_r.current-X.current,er.current+X.current),He=ir.current/ie.getWidth(),n0=We.getWidth()*He,Ge=ie.getContextCoordinates(),S=We.getContextCoordinates(),N=Ge.start-S.start,F=S.end-Ge.end,G=N*He,hr=F*He;xe={visWidth:E&&X.current===q.current.navContext._totalBases?n0-hr:n0,visRegion:We,viewWindow:E&&X.current===q.current.navContext._totalBases?new Re(0,n0-hr):new Re(G,n0-hr),viewWindowRegion:ie},ue=q.current.navContext.getFeaturesInInterval(_r.current-X.current,er.current+X.current).map((ar,Nr)=>ar.getLocus()),_r.current=_r.current-X.current*2,er.current=er.current+X.current*2,de=_Qr(De,q.current)}else if(kr==="right"){ie=new f0(q.current.navContext,er.current-X.current,er.current),Ce=q.current.navContext.getFeaturesInInterval(er.current-X.current,er.current).map((Lr,Kr)=>Lr.getLocus());let He=q.current.navContext.getFeaturesInInterval(er.current-X.current*2,er.current-X.current),n0=new f0(q.current.navContext,er.current-X.current*2,er.current-X.current);de=He.map((Lr,Kr)=>Lr.getLocus());const Ge=new f0(q.current.navContext,er.current-X.current*3,er.current),S=ir.current/n0.getWidth(),N=Ge.getWidth()*S,F=n0.getContextCoordinates(),G=Ge.getContextCoordinates(),hr=F.start-G.start,tr=G.end-F.end,ar=hr*S,Nr=tr*S;xe={visWidth:E&&X.current===q.current.navContext._totalBases?Nr:N,visRegion:Ge,viewWindow:E&&X.current===q.current.navContext._totalBases?new Re(0,Nr):new Re(ar,N-Nr),viewWindowRegion:n0},ue=q.current.navContext.getFeaturesInInterval(er.current-X.current*3,er.current).map((Lr,Kr)=>Lr.getLocus()),H0.current.push(er.current-X.current),er.current=er.current+X.current}else{ie=new f0(q.current.navContext,_r.current,_r.current+X.current),Ce=q.current.navContext.getFeaturesInInterval(_r.current,_r.current+X.current).map((Lr,Kr)=>Lr.getLocus());let He=q.current.navContext.getFeaturesInInterval(_r.current+X.current,_r.current+X.current*2),n0=new f0(q.current.navContext,_r.current+X.current,_r.current+X.current*2);de=He.map((Lr,Kr)=>Lr.getLocus());const Ge=new f0(q.current.navContext,_r.current,_r.current+X.current*3),S=ir.current/n0.getWidth(),N=Ge.getWidth()*S,F=n0.getContextCoordinates(),G=Ge.getContextCoordinates(),hr=F.start-G.start,tr=G.end-F.end,ar=hr*S,Nr=tr*S;xe={visWidth:E&&X.current===q.current.navContext._totalBases?Nr:N,visRegion:Ge,viewWindow:E&&X.current===q.current.navContext._totalBases?new Re(0,Nr):new Re(ar,N-Nr),viewWindowRegion:n0},ue=q.current.navContext.getFeaturesInInterval(_r.current,_r.current+X.current*3).map((Lr,Kr)=>Lr.getLocus()),H0.current.unshift(_r.current),_r.current=_r.current-X.current}let oe={};oe[`${q.current.genome.getName()}`]={genomicLoci:Ce,regionExpandLoci:ne[1]},oe[`${q.current.genome.getName()}`].primaryVisData=xe;let ae=Se.current,ye={primaryGenName:q.current.genome.getName(),initial:vr,side:kr,xDist:ae,genomicFetchCoord:oe,regionLoci:de,visData:xe,regionExpandLoci:ue,viewWindow:yr,initVisData:vr?ne.map((We,He)=>{var pr,Lr,Kr;const n0=new f0((pr=q.current)==null?void 0:pr.navContext,De[He].start,De[He].end),Ge=new f0((Lr=q.current)==null?void 0:Lr.navContext,We.start,We.end),S=ir.current/n0.getWidth(),N=Ge.getWidth()*S,F=n0.getContextCoordinates(),G=Ge.getContextCoordinates(),hr=F.start-G.start,tr=G.end-F.end,ar=hr*S,Nr=tr*S;return{visWidth:E&&X.current===((Kr=q.current)==null?void 0:Kr.navContext._totalBases)?N-Nr:N,visRegion:Ge,viewWindow:new Re(ar,N-Nr),viewWindowRegion:n0}}):""};eqr({trackState:ye,globalTrackState:Ne})}const Os=async vr=>{await Promise.all(vr.data.map(async kr=>{var De;const yr=kr.trackToDrawId?kr.trackToDrawId:{},ie=kr.trackDataIdx;if(Ne.current.trackStates[ie]===void 0)return Promise.resolve();const Ce={...Ne.current.trackStates[ie].trackState,primaryGenName:(De=q.current)==null?void 0:De.genome.getName()};await Promise.all(kr.fetchResults.map(async ne=>{yr[`${ne.id}`]="",await qs({trackState:Ce,result:ne.result,id:ne.id,trackType:ne.trackModel.type?ne.trackModel.type:ne.name?ne.name:"",metadata:ne.metadata,trackModel:ne.trackModel,curFetchNav:ne.name==="bam"?ne.curFetchNav:"",missingIdx:kr.missingIdx,trackDataIdx:kr.trackDataIdx,fileInfos:ne.fileInfos,errorType:ne.errorType})})).then(()=>{const ne=Qr.current,xe=[ne-1,ne,ne+1],ue={};for(let de in yr){const oe=wr.current.caches[de];if(oe)if(oe.error)ue[de]=!1;else if(j.current||oe.useExpandedLoci||!oe.usePrimaryNav)(oe[ne]&&oe[ne].dataCache||!oe.usePrimaryNav)&&(ue[de]=!1);else{let ae=!0;for(let ye of xe)if(!oe[ye]||!oe[ye].dataCache){ae=!1;break}ae&&(ue[de]=!1)}}Object.keys(ue).length>0&&(R.current.key!==ne&&(R.current.key=ne,R.current.done={},R.current.groups={}),nc({trackDataIdx:kr.trackDataIdx,initial:kr.initial,trackToDrawId:ue,missingIdx:kr.missingIdx,curDataIdx:kr.trackDataIdx}),j1())})})).then(()=>{var yr,ie;const kr=(yr=x.current)==null?void 0:yr.worker;if(kr){const Ce=(ie=vr.data[0])==null?void 0:ie._workerIdx;Ce!==void 0&&kr[Ce]&&(kr[Ce].processingCount=Math.max(0,kr[Ce].processingCount-1))}}).catch(kr=>{var ie,Ce;console.error("Error in createInfiniteOnMessage:",kr);const yr=(ie=x.current)==null?void 0:ie.worker;if(yr){const De=(Ce=vr.data[0])==null?void 0:Ce._workerIdx;De!==void 0&&yr[De]&&(yr[De].processingCount=Math.max(0,yr[De].processingCount-1))}})},Ko=vr=>{var De;const kr=vr.data.navData.trackDataIdx,yr={...Ne.current.trackStates[kr].trackState,primaryGenName:(De=q.current)==null?void 0:De.genome.getName(),...vr.data.navData},ie=vr.data.navData.fetchNewRegion,Ce=vr.data.navData.dragX;Promise.all(Object.values(vr.data.fetchResults).map(ne=>qs({trackState:yr,result:ne.records,id:ne.id,trackType:ne.trackModel.type,metadata:ne.metadata,trackModel:ne.trackModel,curFetchNav:ne.name==="bam"?ne.curFetchNav:"",missingIdx:yr.missingIdx,trackDataIdx:vr.data.navData.trackDataIdx,queryGenome:ne.query,errorType:ne.errorType}))).then(()=>{var ne,xe;try{if(Ne.current.trackStates[yr.missingIdx?yr.missingIdx:yr.trackDataIdx].trackState.startWindow=vr.data.navData.regionSetStartBp!==0?yr.genomicFetchCoord[(ne=q.current)==null?void 0:ne.genome.getName()].primaryVisData.viewWindow.start:0,Ne.current.trackStates[yr.missingIdx?yr.missingIdx:yr.trackDataIdx].trackState.genomicFetchCoord=yr.genomicFetchCoord,Ne.current.trackStates[yr.missingIdx?yr.missingIdx:yr.trackDataIdx].trackState.visWidth=yr.genomicFetchCoord[(xe=q.current)==null?void 0:xe.genome.getName()].primaryVisData.visWidth,Lh(yr.missingIdx)){const ue={};for(const de of wr.current.tracks)de.type==="genomealign"&&(ue[de.id]=!1);if(yr.fetchAfterGenAlignTracks.length>0){for(const de of yr.fetchAfterGenAlignTracks)de.genomicFetchCoord=yr.genomicFetchCoord;R.current.key!==yr.trackDataIdx&&(R.current.key=yr.trackDataIdx,R.current.done={},R.current.groups={}),(ie||Ce===Se.current)&&(nc({curDataIdx:yr.trackDataIdx,isInitial:void 0,trackToDrawId:ue,missingIdx:yr.missingIdx,trackDataIdx:yr.trackDataIdx}),K1(yr.fetchAfterGenAlignTracks))}else nc({curDataIdx:yr.trackDataIdx,isInitial:0,trackToDrawId:ue,missingIdx:yr.missingIdx})}wh()}catch{R.current.key!==yr.trackDataIdx&&(R.current.key=yr.trackDataIdx,R.current.done={},R.current.groups={});const de={};for(const oe in wr.current.caches)wr.current.caches[oe].trackType==="genomealign"&&wr.current.caches[oe].error&&(de[oe]=!1);yr.fetchAfterGenAlignTracks.length>0&&(yr.genomicFetchCoord=null,K1(yr.fetchAfterGenAlignTracks)),nc({curDataIdx:yr.trackDataIdx,trackToDrawId:de})}}).catch(ne=>{console.error("Error in createGenomeAlignOnMessage:",ne),R.current.key!==yr.trackDataIdx&&(R.current.key=yr.trackDataIdx,R.current.done={},R.current.groups={});const xe={};for(const ue in wr.current.caches)wr.current.caches[ue].trackType==="genomealign"&&wr.current.caches[ue].error&&(xe[ue]=!1);yr.fetchAfterGenAlignTracks.length>0&&(yr.genomicFetchCoord=null,K1(yr.fetchAfterGenAlignTracks)),nc({curDataIdx:yr.trackDataIdx,trackToDrawId:xe})})};function n1(vr){var ne;if(!q.current)return;const kr={};let yr=!1;const ie=vr,Ce=[vr-1,vr,vr+1];let De=!1;for(const[xe,ue]of Object.entries(wr.current.caches)){let de=!0;for(const oe of Ce)if(oe in ue||(ue.useExpandedLoci||!ue.usePrimaryNav)&&oe!==ie||(wr.current.caches[xe][oe]={}),oe in ue){if((ue.useExpandedLoci||!ue.usePrimaryNav)&&oe!==ie)continue;const ae=ue.trackType==="genomealign",ye=!("dataCache"in ue[oe])||(ae||!ue.usePrimaryNav)&&!j.current;ie===oe&&ae&&ye?(De=!0,de=!1,yr=!0):ye&&(de=!1,yr=!0)}de&&(kr[xe]=!1)}if(yr){const xe=[];for(const ue of Ce){let de=[],oe=ue in Ne.current.trackStates?(ne=Ne.current.trackStates[ue])==null?void 0:ne.trackState:"";for(const ae in wr.current.caches){const ye=wr.current.caches[ae];if(!((ye.useExpandedLoci||!ye.usePrimaryNav)&&ue!==ie||ye.trackType==="genomealign")&&ue in ye&&(!("dataCache"in ye[ue])||!ye.usePrimaryNav&&!j.current)){let We=wr.current.tracks.find(He=>He.id===Number(ae)||He.id===ae);if(We){wr.current.caches[ae][ue].dataCache=null;const He=Zr.cloneDeep(We);if(He.error=ye.error,He.shouldPlaceRegion=ye.firstLoad&&ye.usePrimaryNav&&!ye.useExpandedLoci,He.shouldPlaceRegion&&ue!==ie)continue;de.push(He)}}}if(de.length>0){const ae=q.current.genome.getName();xe.push({primaryGenName:ae,trackModelArr:de,visData:oe.visData?oe.visData:oe.genomicFetchCoord?oe.genomicFetchCoord[`${ae}`].primaryVisData:"",genomicLoci:oe.regionLoci,visRegion:oe.visRegion?oe.visRegion:oe.genomicFetchCoord?oe.genomicFetchCoord[`${ae}`].primaryVisData.visRegion:"",regionExpandLoci:oe.regionExpandLoci,useFineModeNav:j.current,windowWidth:ir.current,bpRegionSize:X.current,trackDataIdx:ie,missingIdx:ue,genomicFetchCoord:oe==null?void 0:oe.genomicFetchCoord})}}for(const ue in wr.current.caches)wr.current.caches[ue].firstLoad=!1;if(s0.current&&De){const ue=wr.current.tracks.filter((ye,We)=>ye.type==="genomealign"),de=Ne.current.trackStates[ie].trackState,ae=q.current.navContext.getFeaturesInInterval(V.current,V.current+X.current).map((ye,We)=>ye.getLocus());Rt({trackToFetch:ue,visData:de.visData,genomicLoci:de.regionLoci,viewWindowGenomicLoci:ae,primaryGenName:q.current.genome.getName(),trackModelArr:ue,regionExpandLoci:de.regionExpandLoci,useFineModeNav:j.current,windowWidth:ir.current,bpRegionSize:X.current,fetchAfterGenAlignTracks:xe,trackDataIdx:ie,missingIdx:ie,fetchNewRegion:!0})}else K1(xe)}Object.keys(kr).length>0&&(!De||s0.current&&!j.current)&&!O.current&&Qr.current!==R.current.key&&(R.current.key=Qr.current,R.current.done={},R.current.groups={},nc({curDataIdx:Qr.current,trackToDrawId:{...kr}}))}function c1(){const vr=performance.memory;return vr?vr.usedJSHeapSize/(1024*1024)>2e3:!1}function nc(vr){var kr,yr,ie,Ce;for(const De in wr.current.caches){const ne=wr.current.caches[De],xe=Object.keys(ne).filter(oe=>Lh(oe)).map(Number).sort((oe,ae)=>oe-ae);let ue,de;ne.trackType in $X||!ne.usePrimaryNav?(ue=Qr.current-(c1()?1:2),de=Qr.current+(c1()?1:2)):(ue=Qr.current-(c1()?2:3),de=Qr.current+(c1()?2:3));for(const oe of xe)(oe<ue||oe>de)&&wr.current.caches[De][oe]&&(wr.current.caches[De][oe]={})}if(vr&&Object.keys(vr.trackToDrawId).length>0){let De;const ne=(kr=q.current)==null?void 0:kr.genome.getName();if(j.current&&Ne.current.trackStates[vr.curDataIdx].trackState.genomicFetchCoord){const ue={...Ne.current.trackStates[vr.curDataIdx].trackState}.genomicFetchCoord[ne].primaryVisData,de=ue.viewWindow,oe=Ne.current.viewWindow;let ae;oe?(ae=oe.start,oe.end):ae=0;let ye;const We=Wo(ue.viewWindowRegion);ye=Ws(Wo(We),Se.current%ir.current-(x0.current==="left"?ir.current:0)),a(ye.start,ye.end);const He=ae-ir.current+de.start,n0=He+ir.current;De=new Re(He,n0)}else E&&X.current===q.current.navContext._totalBases?De=new Re(0,ir.current):De=Ne.current.viewWindow;for(const xe in vr.trackToDrawId){let ue,de;if(wr.current.globalConfig&&xe in wr.current.globalConfig?ue=wr.current.globalConfig[xe].configOptions:(de=Gt(xe),de&&hn[`${wr.current.caches[xe].trackType}`]&&(ue={...hn[`${wr.current.caches[xe].trackType}`].defaultOptions,...de.options})),ue&&ue.group&&wr.current.caches[xe].trackType in jX){const oe=ue.group;R.current.groups[`${oe}`]||(R.current.groups[`${oe}`]={}),R.current.groups[`${oe}`][`${xe}`]=vr.trackToDrawId[`${xe}`]}else $i(De,vr.curDataIdx,{[xe]:!1}),R.current.done[`${xe}`]=vr.trackToDrawId[`${xe}`]}for(const xe in R.current.groups){const ue=Object.keys(R.current.groups[`${xe}`]),de=new Set(wr.current.tracks.filter(ae=>ae.options&&String(ae.options.group)===xe).map(ae=>ae.id));let oe=!0;for(let ae of ue){if(!de.has(ae)){oe=!1;break}if((Ce=(ie=(yr=R.current)==null?void 0:yr.groups)==null?void 0:ie.done)!=null&&Ce[ae]&&R.current.groups.done[ae]===!0){oe=!1;break}}oe&&($i(De,vr.curDataIdx,{...R.current.groups[`${xe}`]}),R.current.done={...R.current.done,...R.current.groups[`${xe}`]})}P.startTransition(()=>Xn({trackToDrawId:{...R.current.done},viewWindow:X.current===q.current.navContext._totalBases?{start:0,end:ir.current}:De,completedFetchedRegion:R}))}}async function qs(vr){var yr,ie,Ce,De;const kr=vr.result;if(vr.fileInfos&&(wr.current.caches[`${vr.id}`].fileInfos=vr.fileInfos),Lh(vr.missingIdx)&&wr.current.caches[`${vr.id}`][vr.missingIdx]){const ne=vr.trackDataIdx?vr.trackDataIdx:Qr.current,xe=[ne+1,ne,ne-1];let ue;try{let de=[];for(let oe of xe)if((De=(Ce=(ie=(yr=Ne.current)==null?void 0:yr.trackStates)==null?void 0:ie[oe])==null?void 0:Ce.trackState)!=null&&De.regionLoci)de.push(Ne.current.trackStates[oe].trackState.regionLoci);else{de=[];break}ue=kf(kr,vr.trackType,vr.trackModel.shouldPlaceRegion,de)}catch(de){ue=[],wr.current.caches[`${vr.id}`].error="data format error",console.error("formatDataByType failed for track",vr.id,de)}if(vr!=null&&vr.errorType)wr.current.caches[`${vr.id}`].error=vr==null?void 0:vr.errorType;else if(vr.trackModel.shouldPlaceRegion)for(let de=0;de<3;de++)wr.current.caches[`${vr.id}`][xe[de]].dataCache=ue[de];else wr.current.caches[`${vr.id}`][vr.missingIdx].dataCache=ue}}function Eh(vr,kr,yr="isJump",ie=!1){const Ce=kr-vr;if(Ce<yY){const De=.5*(yY-Ce);vr-=De,kr+=De}if(String(yr)in vS||yr===P0.Zoom||yr===P0.PanLeft||yr===P0.PanRight||yr==="isJump")wr.current.viewRegion._startBase=vr,wr.current.viewRegion._endBase=kr,$o.current(vr,kr,ie);else if(yr===P0.Highlight){let De={start:vr,end:kr,display:!0,color:"rgba(0, 123, 255, 0.25)",tag:""};const ne=[...i,De];l(ne)}}function Xt(vr,kr,yr){const ie=Zr.sortedIndexBy(kr,{contextBase:vr},"contextBase"),Ce=yr[ie]||0;return vr+Ce}function p1(vr){var Ce,De,ne,xe,ue,de,oe;let kr=[];const yr=(oe=(de=(ue=(xe=(ne=Ne.current.trackStates)==null?void 0:ne[(De=(Ce=wn==null?void 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0:yr.navContext,V.current,V.current+X.current).zoom(vS[`${vr}`].factor);Eh(Ce._startBase,Ce._endBase,vr)}else m.tool===P0.Drag?kr.isSelected=!1:m.tool&&m.tool!==P0.highlightMenu&&m.tool!==P0.ReorderMany&&m.tool!==P0.History&&(kr.isSelected=!0);return kr.title=vr,a0.current=kr.isSelected,kr}function $h(vr){var De;wr.current.caches[`${vr.id}`]||(wr.current.caches[`${vr.id}`]={}),vr.type==="genomealign"&&(fe.current<10&&(j.current=!0),s0.current=!0),vr.type in{matplot:"",dynamic:"",dynamicbed:"",dynamiclongrange:"",dynamichic:""}&&((De=vr.tracks)==null||De.map((ne,xe)=>{ne.id=`${vr.id}subtrack${xe}`})),wr.current.caches[`${vr.id}`].queryGenome="querygenome"in vr&&vr.querygenome?vr.querygenome:"genome"in vr.metadata&&vr.metadata.genome?vr.metadata.genome:q.current.genome.getName();const kr=wr.current.caches[`${vr.id}`].queryGenome;wr.current.caches[`${vr.id}`].usePrimaryNav=!(kr&&kr!==q.current.genome.getName()),wr.current.caches[`${vr.id}`].useExpandedLoci=vr.type in 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package/dist/{init-Cy76NrRS.mjs → init-C3fhQHX9.mjs}

@@ -1,5 +1,5 @@
-import { G, b as I, E as _, M as k, U as B, B as O, T as m, c as v, d as A, R as C, w as E, e as U, f as w } from "./index-D2xCvxdB.mjs";
-import { F as z } from "./Filter-W7h2GrVp.mjs";
+import { G, b as I, E as _, M as k, U as B, B as O, T as m, c as v, d as A, R as C, w as E, e as U, f as w } from "./index-Dst209sN.mjs";
+import { F as z } from "./Filter-Dee9z37f.mjs";
 var M = `in vec2 aPosition;
 out vec2 vTextureCoord;
 

package/dist/webworkerAll-C2bXWxJT.mjs

@@ -0,0 +1,2 @@
+import "./index-Dst209sN.mjs";
+import "./init-C3fhQHX9.mjs";

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "wuepgg3-track",
   "private": false,
-  "version": "7.0.2",
+  "version": "7.0.3",
   "main": "dist/index.umd.js",
   "module": "dist/index.es.js",
   "types": "dist/index.d.ts",

package/dist/webworkerAll-DtX5ptKr.mjs

@@ -1,2 +0,0 @@
-import "./index-D2xCvxdB.mjs";
-import "./init-Cy76NrRS.mjs";