wotann 0.5.0 → 0.5.39

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1045) hide show
  1. package/dist/agents/background-agent.d.ts.map +1 -1
  2. package/dist/agents/background-agent.js +2 -1
  3. package/dist/agents/background-agent.js.map +1 -1
  4. package/dist/agents/file-scope-policy.d.ts +116 -0
  5. package/dist/agents/file-scope-policy.d.ts.map +1 -0
  6. package/dist/agents/file-scope-policy.js +190 -0
  7. package/dist/agents/file-scope-policy.js.map +1 -0
  8. package/dist/agents/yaml-manifest.d.ts +125 -0
  9. package/dist/agents/yaml-manifest.d.ts.map +1 -0
  10. package/dist/agents/yaml-manifest.js +901 -0
  11. package/dist/agents/yaml-manifest.js.map +1 -0
  12. package/dist/auth/login.d.ts +3 -3
  13. package/dist/auth/login.d.ts.map +1 -1
  14. package/dist/auth/login.js +80 -23
  15. package/dist/auth/login.js.map +1 -1
  16. package/dist/autopilot/completion-oracle.d.ts.map +1 -1
  17. package/dist/autopilot/completion-oracle.js +3 -1
  18. package/dist/autopilot/completion-oracle.js.map +1 -1
  19. package/dist/autopilot/run-manifest.d.ts +90 -0
  20. package/dist/autopilot/run-manifest.d.ts.map +1 -0
  21. package/dist/autopilot/run-manifest.js +261 -0
  22. package/dist/autopilot/run-manifest.js.map +1 -0
  23. package/dist/browser/adaptive-selectors.d.ts +170 -0
  24. package/dist/browser/adaptive-selectors.d.ts.map +1 -0
  25. package/dist/browser/adaptive-selectors.js +317 -0
  26. package/dist/browser/adaptive-selectors.js.map +1 -0
  27. package/dist/browser/humanize-input.d.ts +76 -0
  28. package/dist/browser/humanize-input.d.ts.map +1 -0
  29. package/dist/browser/humanize-input.js +386 -0
  30. package/dist/browser/humanize-input.js.map +1 -0
  31. package/dist/channels/teams.d.ts +41 -19
  32. package/dist/channels/teams.d.ts.map +1 -1
  33. package/dist/channels/teams.js +121 -24
  34. package/dist/channels/teams.js.map +1 -1
  35. package/dist/channels/terminal-mention.d.ts.map +1 -1
  36. package/dist/channels/terminal-mention.js +4 -1
  37. package/dist/channels/terminal-mention.js.map +1 -1
  38. package/dist/cli/commands/blast-radius.d.ts +47 -0
  39. package/dist/cli/commands/blast-radius.d.ts.map +1 -0
  40. package/dist/cli/commands/blast-radius.js +123 -0
  41. package/dist/cli/commands/blast-radius.js.map +1 -0
  42. package/dist/cli/commands/evolve.d.ts +92 -0
  43. package/dist/cli/commands/evolve.d.ts.map +1 -0
  44. package/dist/cli/commands/evolve.js +336 -0
  45. package/dist/cli/commands/evolve.js.map +1 -0
  46. package/dist/cli/commands/learning.d.ts +54 -0
  47. package/dist/cli/commands/learning.d.ts.map +1 -0
  48. package/dist/cli/commands/learning.js +380 -0
  49. package/dist/cli/commands/learning.js.map +1 -0
  50. package/dist/cli/commands/persona.d.ts +42 -0
  51. package/dist/cli/commands/persona.d.ts.map +1 -0
  52. package/dist/cli/commands/persona.js +198 -0
  53. package/dist/cli/commands/persona.js.map +1 -0
  54. package/dist/cli/commands/stuck.d.ts.map +1 -1
  55. package/dist/cli/commands/stuck.js +5 -2
  56. package/dist/cli/commands/stuck.js.map +1 -1
  57. package/dist/cli/commands.d.ts.map +1 -1
  58. package/dist/cli/commands.js +5 -2
  59. package/dist/cli/commands.js.map +1 -1
  60. package/dist/cli/orphan-wires/agent-manifest-cmd.d.ts +17 -0
  61. package/dist/cli/orphan-wires/agent-manifest-cmd.d.ts.map +1 -0
  62. package/dist/cli/orphan-wires/agent-manifest-cmd.js +99 -0
  63. package/dist/cli/orphan-wires/agent-manifest-cmd.js.map +1 -0
  64. package/dist/cli/orphan-wires/arena-cmd.d.ts +26 -0
  65. package/dist/cli/orphan-wires/arena-cmd.d.ts.map +1 -0
  66. package/dist/cli/orphan-wires/arena-cmd.js +167 -0
  67. package/dist/cli/orphan-wires/arena-cmd.js.map +1 -0
  68. package/dist/cli/orphan-wires/artifact-cmd.d.ts +17 -0
  69. package/dist/cli/orphan-wires/artifact-cmd.d.ts.map +1 -0
  70. package/dist/cli/orphan-wires/artifact-cmd.js +175 -0
  71. package/dist/cli/orphan-wires/artifact-cmd.js.map +1 -0
  72. package/dist/cli/orphan-wires/demo-cmd.d.ts +25 -0
  73. package/dist/cli/orphan-wires/demo-cmd.d.ts.map +1 -0
  74. package/dist/cli/orphan-wires/demo-cmd.js +164 -0
  75. package/dist/cli/orphan-wires/demo-cmd.js.map +1 -0
  76. package/dist/cli/orphan-wires/extras-cmd.d.ts +20 -0
  77. package/dist/cli/orphan-wires/extras-cmd.d.ts.map +1 -0
  78. package/dist/cli/orphan-wires/extras-cmd.js +289 -0
  79. package/dist/cli/orphan-wires/extras-cmd.js.map +1 -0
  80. package/dist/cli/orphan-wires/harness-introspect-cmd.d.ts +15 -0
  81. package/dist/cli/orphan-wires/harness-introspect-cmd.d.ts.map +1 -0
  82. package/dist/cli/orphan-wires/harness-introspect-cmd.js +36 -0
  83. package/dist/cli/orphan-wires/harness-introspect-cmd.js.map +1 -0
  84. package/dist/cli/orphan-wires/index.d.ts.map +1 -1
  85. package/dist/cli/orphan-wires/index.js +30 -0
  86. package/dist/cli/orphan-wires/index.js.map +1 -1
  87. package/dist/cli/orphan-wires/integrations-cmd.d.ts +38 -0
  88. package/dist/cli/orphan-wires/integrations-cmd.d.ts.map +1 -0
  89. package/dist/cli/orphan-wires/integrations-cmd.js +345 -0
  90. package/dist/cli/orphan-wires/integrations-cmd.js.map +1 -0
  91. package/dist/cli/orphan-wires/mcp-scaffold-cmd.d.ts +18 -0
  92. package/dist/cli/orphan-wires/mcp-scaffold-cmd.d.ts.map +1 -0
  93. package/dist/cli/orphan-wires/mcp-scaffold-cmd.js +127 -0
  94. package/dist/cli/orphan-wires/mcp-scaffold-cmd.js.map +1 -0
  95. package/dist/cli/orphan-wires/memory-consolidate-cmd.d.ts +21 -0
  96. package/dist/cli/orphan-wires/memory-consolidate-cmd.d.ts.map +1 -0
  97. package/dist/cli/orphan-wires/memory-consolidate-cmd.js +86 -0
  98. package/dist/cli/orphan-wires/memory-consolidate-cmd.js.map +1 -0
  99. package/dist/cli/orphan-wires/patch-cmd.d.ts +29 -0
  100. package/dist/cli/orphan-wires/patch-cmd.d.ts.map +1 -0
  101. package/dist/cli/orphan-wires/patch-cmd.js +150 -0
  102. package/dist/cli/orphan-wires/patch-cmd.js.map +1 -0
  103. package/dist/cli/orphan-wires/redteam-scan-cmd.d.ts +28 -0
  104. package/dist/cli/orphan-wires/redteam-scan-cmd.d.ts.map +1 -0
  105. package/dist/cli/orphan-wires/redteam-scan-cmd.js +169 -0
  106. package/dist/cli/orphan-wires/redteam-scan-cmd.js.map +1 -0
  107. package/dist/cli/orphan-wires/scrape-adapt-cmd.d.ts +21 -0
  108. package/dist/cli/orphan-wires/scrape-adapt-cmd.d.ts.map +1 -0
  109. package/dist/cli/orphan-wires/scrape-adapt-cmd.js +70 -0
  110. package/dist/cli/orphan-wires/scrape-adapt-cmd.js.map +1 -0
  111. package/dist/cli/orphan-wires/shell-tier-cmd.d.ts +20 -0
  112. package/dist/cli/orphan-wires/shell-tier-cmd.d.ts.map +1 -0
  113. package/dist/cli/orphan-wires/shell-tier-cmd.js +74 -0
  114. package/dist/cli/orphan-wires/shell-tier-cmd.js.map +1 -0
  115. package/dist/cli/orphan-wires/sub-recipes-cmd.d.ts +18 -0
  116. package/dist/cli/orphan-wires/sub-recipes-cmd.d.ts.map +1 -0
  117. package/dist/cli/orphan-wires/sub-recipes-cmd.js +87 -0
  118. package/dist/cli/orphan-wires/sub-recipes-cmd.js.map +1 -0
  119. package/dist/cli/orphan-wires/webapp-test-cmd.d.ts +20 -0
  120. package/dist/cli/orphan-wires/webapp-test-cmd.d.ts.map +1 -0
  121. package/dist/cli/orphan-wires/webapp-test-cmd.js +115 -0
  122. package/dist/cli/orphan-wires/webapp-test-cmd.js.map +1 -0
  123. package/dist/cli/thin-client.d.ts +17 -10
  124. package/dist/cli/thin-client.d.ts.map +1 -1
  125. package/dist/cli/thin-client.js +108 -26
  126. package/dist/cli/thin-client.js.map +1 -1
  127. package/dist/computer-use/action-history-compactor.d.ts +92 -0
  128. package/dist/computer-use/action-history-compactor.d.ts.map +1 -0
  129. package/dist/computer-use/action-history-compactor.js +204 -0
  130. package/dist/computer-use/action-history-compactor.js.map +1 -0
  131. package/dist/computer-use/action-repertoire.d.ts +8 -0
  132. package/dist/computer-use/action-repertoire.d.ts.map +1 -1
  133. package/dist/computer-use/action-repertoire.js +19 -0
  134. package/dist/computer-use/action-repertoire.js.map +1 -1
  135. package/dist/computer-use/computer-agent.d.ts +232 -2
  136. package/dist/computer-use/computer-agent.d.ts.map +1 -1
  137. package/dist/computer-use/computer-agent.js +558 -19
  138. package/dist/computer-use/computer-agent.js.map +1 -1
  139. package/dist/computer-use/coordinate-scaling.d.ts +104 -0
  140. package/dist/computer-use/coordinate-scaling.d.ts.map +1 -0
  141. package/dist/computer-use/coordinate-scaling.js +175 -0
  142. package/dist/computer-use/coordinate-scaling.js.map +1 -0
  143. package/dist/computer-use/driver-contract.d.ts +158 -0
  144. package/dist/computer-use/driver-contract.d.ts.map +1 -0
  145. package/dist/computer-use/driver-contract.js +471 -0
  146. package/dist/computer-use/driver-contract.js.map +1 -0
  147. package/dist/computer-use/perception-engine.d.ts +39 -0
  148. package/dist/computer-use/perception-engine.d.ts.map +1 -1
  149. package/dist/computer-use/perception-engine.js +27 -27
  150. package/dist/computer-use/perception-engine.js.map +1 -1
  151. package/dist/computer-use/platform-bindings.d.ts.map +1 -1
  152. package/dist/computer-use/platform-bindings.js +216 -2
  153. package/dist/computer-use/platform-bindings.js.map +1 -1
  154. package/dist/computer-use/safe-execute.d.ts +86 -0
  155. package/dist/computer-use/safe-execute.d.ts.map +1 -0
  156. package/dist/computer-use/safe-execute.js +152 -0
  157. package/dist/computer-use/safe-execute.js.map +1 -0
  158. package/dist/context/branch-summarization.d.ts +97 -0
  159. package/dist/context/branch-summarization.d.ts.map +1 -0
  160. package/dist/context/branch-summarization.js +170 -0
  161. package/dist/context/branch-summarization.js.map +1 -0
  162. package/dist/context/compaction.d.ts +16 -1
  163. package/dist/context/compaction.d.ts.map +1 -1
  164. package/dist/context/compaction.js +50 -2
  165. package/dist/context/compaction.js.map +1 -1
  166. package/dist/context/inspector.d.ts +2 -2
  167. package/dist/context/inspector.d.ts.map +1 -1
  168. package/dist/context/inspector.js +4 -3
  169. package/dist/context/inspector.js.map +1 -1
  170. package/dist/core/agent-bridge.d.ts.map +1 -1
  171. package/dist/core/agent-bridge.js +200 -69
  172. package/dist/core/agent-bridge.js.map +1 -1
  173. package/dist/core/config.d.ts.map +1 -1
  174. package/dist/core/config.js +7 -0
  175. package/dist/core/config.js.map +1 -1
  176. package/dist/core/mode-model-preference.d.ts +95 -0
  177. package/dist/core/mode-model-preference.d.ts.map +1 -0
  178. package/dist/core/mode-model-preference.js +170 -0
  179. package/dist/core/mode-model-preference.js.map +1 -0
  180. package/dist/core/prompt-override.d.ts.map +1 -1
  181. package/dist/core/prompt-override.js +1 -0
  182. package/dist/core/prompt-override.js.map +1 -1
  183. package/dist/core/runtime-intelligence.d.ts +11 -0
  184. package/dist/core/runtime-intelligence.d.ts.map +1 -1
  185. package/dist/core/runtime-intelligence.js +18 -3
  186. package/dist/core/runtime-intelligence.js.map +1 -1
  187. package/dist/core/runtime-tool-dispatch.js +1 -1
  188. package/dist/core/runtime-tool-dispatch.js.map +1 -1
  189. package/dist/core/runtime.d.ts +186 -13
  190. package/dist/core/runtime.d.ts.map +1 -1
  191. package/dist/core/runtime.js +717 -228
  192. package/dist/core/runtime.js.map +1 -1
  193. package/dist/core/session-rewind.d.ts +67 -0
  194. package/dist/core/session-rewind.d.ts.map +1 -0
  195. package/dist/core/session-rewind.js +120 -0
  196. package/dist/core/session-rewind.js.map +1 -0
  197. package/dist/core/types.d.ts +19 -0
  198. package/dist/core/types.d.ts.map +1 -1
  199. package/dist/daemon/file-watcher.d.ts +84 -0
  200. package/dist/daemon/file-watcher.d.ts.map +1 -0
  201. package/dist/daemon/file-watcher.js +193 -0
  202. package/dist/daemon/file-watcher.js.map +1 -0
  203. package/dist/daemon/jsonl-mode.d.ts +11 -0
  204. package/dist/daemon/jsonl-mode.d.ts.map +1 -0
  205. package/dist/daemon/jsonl-mode.js +77 -0
  206. package/dist/daemon/jsonl-mode.js.map +1 -0
  207. package/dist/daemon/kairos-ipc.d.ts +4 -1
  208. package/dist/daemon/kairos-ipc.d.ts.map +1 -1
  209. package/dist/daemon/kairos-ipc.js +38 -22
  210. package/dist/daemon/kairos-ipc.js.map +1 -1
  211. package/dist/daemon/kairos-rpc.d.ts +5 -1
  212. package/dist/daemon/kairos-rpc.d.ts.map +1 -1
  213. package/dist/daemon/kairos-rpc.js +1262 -114
  214. package/dist/daemon/kairos-rpc.js.map +1 -1
  215. package/dist/daemon/kairos.d.ts +35 -4
  216. package/dist/daemon/kairos.d.ts.map +1 -1
  217. package/dist/daemon/kairos.js +204 -24
  218. package/dist/daemon/kairos.js.map +1 -1
  219. package/dist/daemon/rpc-handlers/intelligence-rpc.d.ts.map +1 -1
  220. package/dist/daemon/rpc-handlers/intelligence-rpc.js +15 -3
  221. package/dist/daemon/rpc-handlers/intelligence-rpc.js.map +1 -1
  222. package/dist/daemon/transport/jsonl.d.ts +7 -0
  223. package/dist/daemon/transport/jsonl.d.ts.map +1 -0
  224. package/dist/daemon/transport/jsonl.js +38 -0
  225. package/dist/daemon/transport/jsonl.js.map +1 -0
  226. package/dist/daemon/transport/socket-path.d.ts +28 -0
  227. package/dist/daemon/transport/socket-path.d.ts.map +1 -0
  228. package/dist/daemon/transport/socket-path.js +36 -0
  229. package/dist/daemon/transport/socket-path.js.map +1 -0
  230. package/dist/design/theme-presets.d.ts +77 -0
  231. package/dist/design/theme-presets.d.ts.map +1 -0
  232. package/dist/design/theme-presets.js +274 -0
  233. package/dist/design/theme-presets.js.map +1 -0
  234. package/dist/desktop/companion-server.d.ts +67 -4
  235. package/dist/desktop/companion-server.d.ts.map +1 -1
  236. package/dist/desktop/companion-server.js +617 -70
  237. package/dist/desktop/companion-server.js.map +1 -1
  238. package/dist/desktop/web-artifacts-builder.d.ts +108 -0
  239. package/dist/desktop/web-artifacts-builder.d.ts.map +1 -0
  240. package/dist/desktop/web-artifacts-builder.js +184 -0
  241. package/dist/desktop/web-artifacts-builder.js.map +1 -0
  242. package/dist/hooks/built-in.d.ts.map +1 -1
  243. package/dist/hooks/built-in.js +15 -10
  244. package/dist/hooks/built-in.js.map +1 -1
  245. package/dist/index.js +1301 -167
  246. package/dist/index.js.map +1 -1
  247. package/dist/integrations/integration-manifest.d.ts +140 -0
  248. package/dist/integrations/integration-manifest.d.ts.map +1 -0
  249. package/dist/integrations/integration-manifest.js +268 -0
  250. package/dist/integrations/integration-manifest.js.map +1 -0
  251. package/dist/intelligence/apply-patch-dsl.d.ts +112 -0
  252. package/dist/intelligence/apply-patch-dsl.d.ts.map +1 -0
  253. package/dist/intelligence/apply-patch-dsl.js +264 -0
  254. package/dist/intelligence/apply-patch-dsl.js.map +1 -0
  255. package/dist/intelligence/apply-patch-executor.d.ts +147 -0
  256. package/dist/intelligence/apply-patch-executor.d.ts.map +1 -0
  257. package/dist/intelligence/apply-patch-executor.js +418 -0
  258. package/dist/intelligence/apply-patch-executor.js.map +1 -0
  259. package/dist/intelligence/blast-radius.d.ts +67 -0
  260. package/dist/intelligence/blast-radius.d.ts.map +1 -0
  261. package/dist/intelligence/blast-radius.js +536 -0
  262. package/dist/intelligence/blast-radius.js.map +1 -0
  263. package/dist/intelligence/code-graph.d.ts +58 -7
  264. package/dist/intelligence/code-graph.d.ts.map +1 -1
  265. package/dist/intelligence/code-graph.js +347 -16
  266. package/dist/intelligence/code-graph.js.map +1 -1
  267. package/dist/intelligence/codebase-health.d.ts.map +1 -1
  268. package/dist/intelligence/codebase-health.js +4 -3
  269. package/dist/intelligence/codebase-health.js.map +1 -1
  270. package/dist/intelligence/codemaps.d.ts +30 -1
  271. package/dist/intelligence/codemaps.d.ts.map +1 -1
  272. package/dist/intelligence/codemaps.js +99 -16
  273. package/dist/intelligence/codemaps.js.map +1 -1
  274. package/dist/intelligence/consecutive-error-counter.d.ts +89 -0
  275. package/dist/intelligence/consecutive-error-counter.d.ts.map +1 -0
  276. package/dist/intelligence/consecutive-error-counter.js +151 -0
  277. package/dist/intelligence/consecutive-error-counter.js.map +1 -0
  278. package/dist/intelligence/eval-frameworks/redteam-plugin-catalog.d.ts +87 -0
  279. package/dist/intelligence/eval-frameworks/redteam-plugin-catalog.d.ts.map +1 -0
  280. package/dist/intelligence/eval-frameworks/redteam-plugin-catalog.js +882 -0
  281. package/dist/intelligence/eval-frameworks/redteam-plugin-catalog.js.map +1 -0
  282. package/dist/intelligence/extractors/mineru.d.ts +108 -0
  283. package/dist/intelligence/extractors/mineru.d.ts.map +1 -0
  284. package/dist/intelligence/extractors/mineru.js +352 -0
  285. package/dist/intelligence/extractors/mineru.js.map +1 -0
  286. package/dist/intelligence/harness-introspect.d.ts +124 -0
  287. package/dist/intelligence/harness-introspect.d.ts.map +1 -0
  288. package/dist/intelligence/harness-introspect.js +349 -0
  289. package/dist/intelligence/harness-introspect.js.map +1 -0
  290. package/dist/intelligence/multi-patch-voter.d.ts +59 -1
  291. package/dist/intelligence/multi-patch-voter.d.ts.map +1 -1
  292. package/dist/intelligence/multi-patch-voter.js +191 -27
  293. package/dist/intelligence/multi-patch-voter.js.map +1 -1
  294. package/dist/intelligence/multimodal-extract.d.ts +44 -0
  295. package/dist/intelligence/multimodal-extract.d.ts.map +1 -1
  296. package/dist/intelligence/multimodal-extract.js +40 -1
  297. package/dist/intelligence/multimodal-extract.js.map +1 -1
  298. package/dist/intelligence/research-loops/budgeted-research.d.ts +7 -0
  299. package/dist/intelligence/research-loops/budgeted-research.d.ts.map +1 -1
  300. package/dist/intelligence/research-loops/budgeted-research.js +18 -0
  301. package/dist/intelligence/research-loops/budgeted-research.js.map +1 -1
  302. package/dist/intelligence/research-loops/constraint-guided-explorer.d.ts +124 -0
  303. package/dist/intelligence/research-loops/constraint-guided-explorer.d.ts.map +1 -0
  304. package/dist/intelligence/research-loops/constraint-guided-explorer.js +177 -0
  305. package/dist/intelligence/research-loops/constraint-guided-explorer.js.map +1 -0
  306. package/dist/intelligence/research-loops/results-collector.d.ts +62 -0
  307. package/dist/intelligence/research-loops/results-collector.d.ts.map +1 -0
  308. package/dist/intelligence/research-loops/results-collector.js +128 -0
  309. package/dist/intelligence/research-loops/results-collector.js.map +1 -0
  310. package/dist/intelligence/research-loops/results-log.d.ts +94 -0
  311. package/dist/intelligence/research-loops/results-log.d.ts.map +1 -0
  312. package/dist/intelligence/research-loops/results-log.js +178 -0
  313. package/dist/intelligence/research-loops/results-log.js.map +1 -0
  314. package/dist/intelligence/research-loops/strategies/base-strategy.d.ts +111 -0
  315. package/dist/intelligence/research-loops/strategies/base-strategy.d.ts.map +1 -0
  316. package/dist/intelligence/research-loops/strategies/base-strategy.js +72 -0
  317. package/dist/intelligence/research-loops/strategies/base-strategy.js.map +1 -0
  318. package/dist/intelligence/research-loops/strategies/dual-confidence.d.ts +57 -0
  319. package/dist/intelligence/research-loops/strategies/dual-confidence.d.ts.map +1 -0
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package/skills/scientific/paper-lookup/references/pmc.md ADDED
@@ -0,0 +1,152 @@
1
+ # PMC (PubMed Central)
2
+
3
+ PMC is a **full-text archive** of biomedical and life sciences articles. It is separate from PubMed -- PubMed has citations/abstracts, PMC has full text. Not all PubMed articles are in PMC, and vice versa.
4
+
5
+ ## E-utilities for PMC
6
+
7
+ ### Base URL
8
+
9
+ ```
10
+ https://eutils.ncbi.nlm.nih.gov/entrez/eutils/
11
+ ```
12
+
13
+ Same E-utilities as PubMed, but with `db=pmc`.
14
+
15
+ ### eSearch -- Search PMC
16
+
17
+ ```
18
+ GET /esearch.fcgi?db=pmc&term={query}&retmode=json
19
+ ```
20
+
21
+ Same parameters as PubMed eSearch. Returns PMC UIDs (numeric, e.g., `13033346`). You need to prepend "PMC" to get a PMCID (e.g., `PMC13033346`).
22
+
23
+ ### eFetch -- Get Full Text XML
24
+
25
+ ```
26
+ GET /efetch.fcgi?db=pmc&id={pmcid}&retmode=xml
27
+ ```
28
+
29
+ | rettype | retmode | Returns |
30
+ |---------|---------|---------|
31
+ | *(omit)* | `xml` | **Full text JATS XML** (body, figures, references) |
32
+ | `medline` | `text` | MEDLINE format |
33
+
34
+ **Example:**
35
+ ```
36
+ https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id=7029759&retmode=xml
37
+ ```
38
+
39
+ The XML uses JATS (Journal Article Tag Suite) format:
40
+ - `<front>` -- journal metadata, article metadata, author info
41
+ - `<body>` -- full article text with `<sec>` sections, `<p>` paragraphs, `<fig>` figures
42
+ - `<back>` -- `<ref-list>` with all references
43
+
44
+ Pass numeric IDs only (not "PMC7029759", just "7029759").
45
+
46
+ ## BioC API -- Structured Full Text
47
+
48
+ An alternative way to get full text in a structured passage format.
49
+
50
+ ### Base URL
51
+
52
+ ```
53
+ https://www.ncbi.nlm.nih.gov/research/bionlp/RESTful/pmcoa.cgi/
54
+ ```
55
+
56
+ ### Endpoint
57
+
58
+ ```
59
+ GET /BioC_{format}/{id}/{encoding}
60
+ ```
61
+
62
+ | Parameter | Values |
63
+ |-----------|--------|
64
+ | `format` | `json` or `xml` |
65
+ | `id` | PMID (e.g., `17299597`) or PMCID (e.g., `PMC7029759`) |
66
+ | `encoding` | `unicode` or `ascii` |
67
+
68
+ **Example:**
69
+ ```
70
+ https://www.ncbi.nlm.nih.gov/research/bionlp/RESTful/pmcoa.cgi/BioC_json/PMC7029759/unicode
71
+ ```
72
+
73
+ **Response structure (JSON):**
74
+ ```json
75
+ {
76
+ "source": "PMC",
77
+ "documents": [{
78
+ "id": "PMC7029759",
79
+ "infons": {"license": "...", "doi": "..."},
80
+ "passages": [
81
+ {
82
+ "offset": 0,
83
+ "infons": {"section_type": "TITLE"},
84
+ "text": "Article title..."
85
+ },
86
+ {
87
+ "offset": 42,
88
+ "infons": {"section_type": "ABSTRACT"},
89
+ "text": "Abstract text..."
90
+ },
91
+ {
92
+ "offset": 500,
93
+ "infons": {"section_type": "INTRO"},
94
+ "text": "Introduction text..."
95
+ }
96
+ ]
97
+ }]
98
+ }
99
+ ```
100
+
101
+ Section types: `TITLE`, `ABSTRACT`, `INTRO`, `METHODS`, `RESULTS`, `DISCUSS`, `CONCL`, `REF`, `SUPPL`, `FIG`, `TABLE`
102
+
103
+ **Coverage:** ~3 million articles from the PMC Open Access Subset.
104
+
105
+ ## PMC ID Converter API
106
+
107
+ Converts between PMID, PMCID, DOI, and Manuscript ID.
108
+
109
+ ### Base URL
110
+
111
+ ```
112
+ https://pmc.ncbi.nlm.nih.gov/tools/idconv/api/v1/articles/
113
+ ```
114
+
115
+ ### Parameters
116
+
117
+ | Parameter | Required | Description |
118
+ |-----------|----------|-------------|
119
+ | `ids` | Yes | Up to 200 comma-separated IDs |
120
+ | `idtype` | No | `pmcid`, `pmid`, `mid`, `doi` (default: auto-detect) |
121
+ | `format` | No | `json`, `xml`, `csv` (default: xml) |
122
+ | `tool` | Recommended | Your application name |
123
+ | `email` | Recommended | Your contact email |
124
+
125
+ **Example:**
126
+ ```
127
+ https://pmc.ncbi.nlm.nih.gov/tools/idconv/api/v1/articles/?ids=PMC7029759&format=json
128
+ ```
129
+
130
+ **Response:**
131
+ ```json
132
+ {
133
+ "status": "ok",
134
+ "records": [{
135
+ "pmcid": "PMC7029759",
136
+ "pmid": "32117569",
137
+ "doi": "10.12688/f1000research.22211.2"
138
+ }]
139
+ }
140
+ ```
141
+
142
+ Only returns results for articles that are in PMC. If an article is in PubMed but not PMC, no PMCID will be returned.
143
+
144
+ ## Rate Limits
145
+
146
+ | Service | Limit |
147
+ |---------|-------|
148
+ | E-utilities (`db=pmc`) | 3/sec without key, 10/sec with key |
149
+ | BioC API | Follow general NCBI policy (3/sec without key) |
150
+ | ID Converter | Follow general NCBI policy |
151
+
152
+ Include `tool` and `email` parameters on E-utility requests. Large batch jobs should run outside peak hours (Mon-Fri 5AM-9PM ET).
package/skills/scientific/paper-lookup/references/pubmed.md ADDED
@@ -0,0 +1,124 @@
1
+ # PubMed (NCBI E-utilities)
2
+
3
+ PubMed provides citations, abstracts, and metadata for 37M+ biomedical and life science articles. It does NOT contain full text -- for that, use PMC.
4
+
5
+ ## Base URL
6
+
7
+ ```
8
+ https://eutils.ncbi.nlm.nih.gov/entrez/eutils/
9
+ ```
10
+
11
+ ## Authentication
12
+
13
+ - **API key optional** but recommended. Without: 3 req/sec. With: 10 req/sec.
14
+ - Pass as: `&api_key=YOUR_KEY`
15
+ - Also include `&tool=your_app_name&email=your@email.com` on all requests.
16
+
17
+ ## Key Endpoints
18
+
19
+ ### 1. eSearch -- Search and get PMIDs
20
+
21
+ ```
22
+ GET /esearch.fcgi?db=pubmed&term={query}&retmode=json
23
+ ```
24
+
25
+ | Parameter | Required | Default | Description |
26
+ |-----------|----------|---------|-------------|
27
+ | `db` | Yes | -- | `pubmed` |
28
+ | `term` | Yes | -- | Search query. Supports PubMed syntax: field tags `[AU]`, `[TI]`, `[TA]`, `[MH]` (MeSH), boolean AND/OR/NOT |
29
+ | `retmax` | No | 20 | Max PMIDs returned (max 10,000) |
30
+ | `retstart` | No | 0 | Pagination offset |
31
+ | `retmode` | No | `xml` | `json` or `xml` |
32
+ | `rettype` | No | `uilist` | `uilist` (IDs) or `count` (count only) |
33
+ | `sort` | No | `relevance` | `relevance`, `pub_date`, `Author`, `JournalName` |
34
+ | `datetype` | No | -- | `pdat` (publication), `mdat` (modification), `edat` (entrez) |
35
+ | `mindate` / `maxdate` | No | -- | Date range `YYYY/MM/DD` |
36
+ | `reldate` | No | -- | Items from last N days |
37
+ | `usehistory` | No | -- | `y` to store on History Server for large result sets |
38
+
39
+ **Example:**
40
+ ```
41
+ https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=CRISPR+gene+therapy&retmode=json&retmax=5&sort=pub_date
42
+ ```
43
+
44
+ **Response:**
45
+ ```json
46
+ {
47
+ "esearchresult": {
48
+ "count": "224107",
49
+ "retmax": "5",
50
+ "retstart": "0",
51
+ "idlist": ["39984857", "39984678", "39984543", "39984210", "39983901"]
52
+ }
53
+ }
54
+ ```
55
+
56
+ ### 2. eSummary -- Get document summaries
57
+
58
+ ```
59
+ GET /esummary.fcgi?db=pubmed&id={pmids}&retmode=json
60
+ ```
61
+
62
+ | Parameter | Required | Description |
63
+ |-----------|----------|-------------|
64
+ | `db` | Yes | `pubmed` |
65
+ | `id` | Yes | Comma-separated PMIDs (max 10,000) |
66
+ | `retmode` | No | `json` or `xml` |
67
+
68
+ **Example:**
69
+ ```
70
+ https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&id=39984857,39984678&retmode=json
71
+ ```
72
+
73
+ **Response fields:** `uid`, `pubdate`, `source` (journal), `authors`, `title`, `volume`, `issue`, `pages`, `fulljournalname`, `elocationid` (DOI), `articleids` (PMC, DOI, etc.), `pubtype`, `pmcrefcount`
74
+
75
+ ### 3. eFetch -- Retrieve full records (abstracts, MEDLINE)
76
+
77
+ ```
78
+ GET /efetch.fcgi?db=pubmed&id={pmids}&rettype={type}&retmode={mode}
79
+ ```
80
+
81
+ | rettype | retmode | Returns |
82
+ |---------|---------|---------|
83
+ | *(omit)* | `xml` | Full PubMed XML (citation + abstract) |
84
+ | `medline` | `text` | MEDLINE format |
85
+ | `abstract` | `text` | Plain text abstract |
86
+ | `uilist` | `text` | PMID list |
87
+
88
+ **Example -- get abstracts as XML:**
89
+ ```
90
+ https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=39984857&retmode=xml
91
+ ```
92
+
93
+ The XML contains `<PubmedArticle>` with `<MedlineCitation>` (title, abstract, MeSH terms, authors) and `<PubmedData>` (article IDs, publication history).
94
+
95
+ ### 4. eLink -- Find related articles
96
+
97
+ ```
98
+ GET /elink.fcgi?dbfrom=pubmed&db=pubmed&id={pmid}&cmd=neighbor_score&retmode=json
99
+ ```
100
+
101
+ Returns related PMIDs with relevance scores.
102
+
103
+ ## Search Syntax Tips
104
+
105
+ - **Field tags:** `aspirin[TI]` (title), `Smith J[AU]` (author), `Nature[TA]` (journal), `neoplasms[MH]` (MeSH heading)
106
+ - **Boolean:** `CRISPR AND (therapy OR treatment)`
107
+ - **Date range:** `2020/01/01:2024/12/31[PDAT]`
108
+ - **Publication type:** `review[PT]`, `clinical trial[PT]`
109
+ - **Organism:** `humans[MH]`, `mice[MH]`
110
+
111
+ ## Rate Limits
112
+
113
+ - **3 requests/second** without API key
114
+ - **10 requests/second** with API key
115
+ - Include `tool` and `email` parameters on every request
116
+ - Large batch jobs should run outside peak hours (Mon-Fri 5AM-9PM ET)
117
+
118
+ ## Error Format
119
+
120
+ ```json
121
+ {"error": "API rate limit exceeded", "count": "11"}
122
+ ```
123
+
124
+ HTTP 400 for bad requests, 429 for rate limiting.
package/skills/scientific/paper-lookup/references/semantic-scholar.md ADDED
@@ -0,0 +1,203 @@
1
+ # Semantic Scholar API
2
+
3
+ Semantic Scholar indexes 200M+ papers across all academic fields with AI-powered features: citation context, influential citations, TLDRs, and paper recommendations.
4
+
5
+ ## Base URLs
6
+
7
+ ```
8
+ https://api.semanticscholar.org/graph/v1 (Academic Graph)
9
+ https://api.semanticscholar.org/recommendations/v1 (Recommendations)
10
+ ```
11
+
12
+ ## Authentication
13
+
14
+ - **Without key:** Shared rate pool (frequently hits 429 errors). Works but unreliable.
15
+ - **With key:** 1 req/sec per key (higher on request).
16
+ - Header: `x-api-key: YOUR_KEY`
17
+ - Get a free key at: https://www.semanticscholar.org/product/api#api-key-form
18
+
19
+ ## The `fields` Parameter
20
+
21
+ Almost every endpoint accepts `fields` -- a comma-separated list (no spaces) of fields to include. Without it, you only get `paperId` + `title`.
22
+
23
+ **Paper fields:**
24
+ `paperId`, `corpusId`, `externalIds`, `url`, `title`, `abstract`, `venue`, `publicationVenue`, `year`, `referenceCount`, `citationCount`, `influentialCitationCount`, `isOpenAccess`, `openAccessPdf`, `fieldsOfStudy`, `s2FieldsOfStudy`, `publicationTypes`, `publicationDate`, `journal`, `authors`, `citations`, `references`, `tldr`, `embedding`
25
+
26
+ **Author fields:**
27
+ `authorId`, `externalIds`, `url`, `name`, `affiliations`, `homepage`, `paperCount`, `citationCount`, `hIndex`, `papers`
28
+
29
+ ## Paper ID Formats
30
+
31
+ The `{paper_id}` parameter accepts:
32
+ - `649def34f8be52c8b66281af98ae884c09aef38b` (S2 hash)
33
+ - `CorpusId:215416146`
34
+ - `DOI:10.1038/s41586-021-03819-2`
35
+ - `ARXIV:2005.14165`
36
+ - `PMID:19872477`
37
+ - `PMCID:2323736`
38
+ - `ACL:W12-3903`
39
+
40
+ ## Key Endpoints
41
+
42
+ ### 1. Paper search (relevance)
43
+
44
+ ```
45
+ GET /graph/v1/paper/search?query={text}&fields={fields}&offset={n}&limit={n}
46
+ ```
47
+
48
+ | Parameter | Default | Description |
49
+ |-----------|---------|-------------|
50
+ | `query` | required | Plain-text search |
51
+ | `fields` | paperId,title | Comma-separated |
52
+ | `offset` | 0 | Pagination start |
53
+ | `limit` | 100 | Max 100 |
54
+ | `year` | -- | `2019` or `2016-2020` |
55
+ | `publicationDateOrYear` | -- | `YYYY-MM-DD:YYYY-MM-DD` |
56
+ | `fieldsOfStudy` | -- | e.g., `Computer Science,Medicine` |
57
+ | `publicationTypes` | -- | e.g., `JournalArticle,Conference` |
58
+ | `openAccessPdf` | -- | Filter for OA papers |
59
+ | `minCitationCount` | -- | Minimum citations |
60
+ | `venue` | -- | Comma-separated venues |
61
+
62
+ **Max 1,000 results** accessible via offset.
63
+
64
+ **Example:**
65
+ ```
66
+ https://api.semanticscholar.org/graph/v1/paper/search?query=CRISPR+gene+therapy&fields=title,year,abstract,citationCount,authors,openAccessPdf&limit=10&year=2023-2024
67
+ ```
68
+
69
+ ### 2. Paper bulk search (boolean queries, large result sets)
70
+
71
+ ```
72
+ GET /graph/v1/paper/search/bulk?query={text}&fields={fields}&sort={field}:{order}&token={token}
73
+ ```
74
+
75
+ - Supports boolean operators: `+` (AND), `|` (OR), `-` (NOT), `"..."` (phrase), `*` (wildcard), `()` (grouping)
76
+ - Token-based pagination (up to 10M papers)
77
+ - Returns up to 1,000 per call
78
+ - Sortable: `citationCount:desc`, `publicationDate:desc`, `paperId:asc`
79
+
80
+ ### 3. Paper details (by ID)
81
+
82
+ ```
83
+ GET /graph/v1/paper/{paper_id}?fields={fields}
84
+ ```
85
+
86
+ **Example:**
87
+ ```
88
+ https://api.semanticscholar.org/graph/v1/paper/DOI:10.1038/s41586-021-03819-2?fields=title,year,abstract,citationCount,referenceCount,isOpenAccess,openAccessPdf,authors,tldr
89
+ ```
90
+
91
+ **Response:**
92
+ ```json
93
+ {
94
+ "paperId": "dc32a984b651256a8ec282be52310e6bd33d9815",
95
+ "title": "Highly accurate protein structure prediction with AlphaFold",
96
+ "year": 2021,
97
+ "citationCount": 34260,
98
+ "isOpenAccess": true,
99
+ "openAccessPdf": {"url": "https://...pdf", "status": "HYBRID"},
100
+ "tldr": {"text": "This work develops AlphaFold, a system that..."},
101
+ "authors": [{"authorId": "47921134", "name": "J. Jumper"}, ...]
102
+ }
103
+ ```
104
+
105
+ ### 4. Paper citations
106
+
107
+ ```
108
+ GET /graph/v1/paper/{paper_id}/citations?fields={fields}&offset={n}&limit={n}
109
+ ```
110
+
111
+ Returns papers that cite this paper. `limit` max 1000.
112
+
113
+ Citation-specific fields: `contexts`, `intents`, `isInfluential`
114
+
115
+ ### 5. Paper references
116
+
117
+ ```
118
+ GET /graph/v1/paper/{paper_id}/references?fields={fields}&offset={n}&limit={n}
119
+ ```
120
+
121
+ Returns papers cited by this paper. Same pagination as citations.
122
+
123
+ ### 6. Paper title match
124
+
125
+ ```
126
+ GET /graph/v1/paper/search/match?query={exact title}&fields={fields}
127
+ ```
128
+
129
+ Returns single best match with `matchScore`. 404 if no match.
130
+
131
+ ### 7. Author search
132
+
133
+ ```
134
+ GET /graph/v1/author/search?query={name}&fields={fields}&offset={n}&limit={n}
135
+ ```
136
+
137
+ ### 8. Author details
138
+
139
+ ```
140
+ GET /graph/v1/author/{author_id}?fields={fields}
141
+ ```
142
+
143
+ ### 9. Author's papers
144
+
145
+ ```
146
+ GET /graph/v1/author/{author_id}/papers?fields={fields}&offset={n}&limit={n}
147
+ ```
148
+
149
+ ### 10. Paper recommendations
150
+
151
+ ```
152
+ GET /recommendations/v1/papers/forpaper/{paper_id}?fields={fields}&limit={n}&from={pool}
153
+ ```
154
+
155
+ `from`: `recent` (default) or `all-cs`. `limit` max 500.
156
+
157
+ ### 11. Multi-paper recommendations (POST)
158
+
159
+ ```
160
+ POST /recommendations/v1/papers/
161
+ Content-Type: application/json
162
+
163
+ {
164
+ "positivePaperIds": ["paperId1", "paperId2"],
165
+ "negativePaperIds": ["paperId3"]
166
+ }
167
+ ```
168
+
169
+ ### 12. Paper batch (POST)
170
+
171
+ ```
172
+ POST /graph/v1/paper/batch?fields={fields}
173
+ Content-Type: application/json
174
+
175
+ {"ids": ["DOI:10.1038/nature12373", "ARXIV:2005.14165"]}
176
+ ```
177
+
178
+ Max 500 IDs per request.
179
+
180
+ ## Pagination
181
+
182
+ | Endpoint | Max per page | Max total | Method |
183
+ |----------|-------------|-----------|--------|
184
+ | Relevance search | 100 | 1,000 | offset/next |
185
+ | Bulk search | 1,000 | 10,000,000 | token |
186
+ | Citations/References | 1,000 | all | offset/next |
187
+ | Author search | 1,000 | -- | offset/next |
188
+
189
+ ## Publication Types
190
+
191
+ `Review`, `JournalArticle`, `CaseReport`, `ClinicalTrial`, `Conference`, `Dataset`, `Editorial`, `LettersAndComments`, `MetaAnalysis`, `News`, `Study`, `Book`, `BookSection`
192
+
193
+ ## Fields of Study
194
+
195
+ `Computer Science`, `Medicine`, `Chemistry`, `Biology`, `Materials Science`, `Physics`, `Geology`, `Psychology`, `Art`, `History`, `Geography`, `Sociology`, `Business`, `Political Science`, `Economics`, `Philosophy`, `Mathematics`, `Engineering`, `Environmental Science`, `Agricultural and Food Sciences`, `Education`, `Law`, `Linguistics`
196
+
197
+ ## Error Format
198
+
199
+ ```json
200
+ {"message": "Too Many Requests", "code": "429"}
201
+ ```
202
+
203
+ HTTP 404 for not found, 429 for rate limit.
package/skills/scientific/paper-lookup/references/unpaywall.md ADDED
@@ -0,0 +1,127 @@
1
+ # Unpaywall API
2
+
3
+ Unpaywall tells you whether a legal, free copy of a scholarly article exists. Given a DOI, it returns open access status, PDF links, and location details.
4
+
5
+ ## Base URL
6
+
7
+ ```
8
+ https://api.unpaywall.org/v2
9
+ ```
10
+
11
+ ## Authentication
12
+
13
+ No API key. You must include your **email address** as a query parameter: `?email=you@example.com`
14
+
15
+ **Important:** Use a real email address. Unpaywall rejects placeholder emails like `test@example.com` with HTTP 422.
16
+
17
+ ## Rate Limits
18
+
19
+ 100,000 calls per day. For heavier use, download the database snapshot.
20
+
21
+ ## Key Endpoints
22
+
23
+ ### 1. DOI Lookup
24
+
25
+ ```
26
+ GET /v2/{doi}?email=you@example.com
27
+ ```
28
+
29
+ **Example:**
30
+ ```
31
+ https://api.unpaywall.org/v2/10.1038/nature12373?email=you@example.com
32
+ ```
33
+
34
+ ### 2. Search (unreliable)
35
+
36
+ ```
37
+ GET /v2/search?query={text}&email=you@example.com
38
+ ```
39
+
40
+ **Warning:** The search endpoint has been returning HTTP 500 errors as of March 2026. It may be deprecated or intermittently broken. Use DOI lookups instead -- find papers via PubMed/OpenAlex/Semantic Scholar first, then check OA status per-DOI.
41
+
42
+ | Parameter | Description |
43
+ |-----------|-------------|
44
+ | `query` | Search text. Supports quoted phrases, `OR`, `-` negation |
45
+ | `is_oa` | `true` or `false` -- filter by OA status |
46
+ | `page` | Page number (1-indexed), 50 results per page |
47
+
48
+ ## Response Format
49
+
50
+ ### DOI Lookup response
51
+ ```json
52
+ {
53
+ "doi": "10.1038/nature12373",
54
+ "doi_url": "https://doi.org/10.1038/nature12373",
55
+ "title": "Nanometre-scale thermometry in a living cell",
56
+ "year": 2013,
57
+ "published_date": "2013-07-31",
58
+ "genre": "journal-article",
59
+ "publisher": "Springer Nature",
60
+ "is_oa": true,
61
+ "oa_status": "green",
62
+ "best_oa_location": {
63
+ "url": "https://dash.harvard.edu/bitstream/1/...",
64
+ "url_for_pdf": "https://dash.harvard.edu/bitstream/1/...pdf",
65
+ "url_for_landing_page": "https://dash.harvard.edu/handle/...",
66
+ "host_type": "repository",
67
+ "version": "acceptedVersion",
68
+ "license": "cc-by",
69
+ "is_best": true,
70
+ "oa_date": "2016-01-01"
71
+ },
72
+ "first_oa_location": {...},
73
+ "oa_locations": [...],
74
+ "has_repository_copy": true,
75
+ "journal_name": "Nature",
76
+ "journal_issns": "0028-0836,1476-4687",
77
+ "journal_issn_l": "0028-0836",
78
+ "journal_is_oa": false,
79
+ "journal_is_in_doaj": false,
80
+ "z_authors": [
81
+ {"raw_author_name": "G. Kucsko", "author_position": "first"},
82
+ {"raw_author_name": "P. C. Maurer", "author_position": "middle"}
83
+ ]
84
+ }
85
+ ```
86
+
87
+ ### OA Status values
88
+ | Status | Meaning |
89
+ |--------|---------|
90
+ | `gold` | Published in a fully OA journal |
91
+ | `hybrid` | OA in a subscription journal (publisher-hosted) |
92
+ | `bronze` | Free to read on publisher site but no OA license |
93
+ | `green` | Available via a repository (e.g., institutional, preprint) |
94
+ | `closed` | No free legal copy found |
95
+
96
+ ### OA Location fields
97
+ | Field | Description |
98
+ |-------|-------------|
99
+ | `url` | Best URL (PDF if available, else landing page) |
100
+ | `url_for_pdf` | Direct PDF URL (null if no PDF) |
101
+ | `url_for_landing_page` | Landing page URL |
102
+ | `host_type` | `publisher` or `repository` |
103
+ | `version` | `submittedVersion`, `acceptedVersion`, `publishedVersion` |
104
+ | `license` | e.g., `cc-by`, `cc-by-nc`, `implied-oa`, or null |
105
+ | `is_best` | Whether this is the `best_oa_location` |
106
+ | `oa_date` | When first available at this location |
107
+
108
+ ### Search response
109
+ ```json
110
+ {
111
+ "results": [
112
+ {
113
+ "response": {...},
114
+ "score": 42.5,
115
+ "snippet": "...text with <b>highlighted</b> matches..."
116
+ }
117
+ ]
118
+ }
119
+ ```
120
+
121
+ ## Typical Workflow
122
+
123
+ 1. You have a DOI from PubMed, Crossref, or another source
124
+ 2. Call Unpaywall with the DOI
125
+ 3. Check `is_oa` -- if true, use `best_oa_location.url_for_pdf` for the free PDF
126
+ 4. Check `oa_status` to understand what kind of OA it is
127
+ 5. If closed, `oa_locations` will be empty -- the article requires a subscription