wikimem 0.1.0

package/dist/search/index.js

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+import { readFileSync } from 'node:fs';
+import { basename, extname } from 'node:path';
+import { bm25Search } from './bm25.js';
+import { semanticSearch } from './semantic.js';
+/**
+ * Search wiki pages. Supports BM25 (keyword), semantic (embedding), and hybrid modes.
+ */
+export async function searchPages(query, pagePaths, options) {
+    const mode = options?.mode ?? 'bm25';
+    const limit = options?.limit ?? 20;
+    // BM25 keyword search (always available)
+    const bm25Results = runBm25Search(query, pagePaths);
+    if (mode === 'bm25' || !options?.embeddingProvider || !options?.wikiDir) {
+        return bm25Results.slice(0, limit);
+    }
+    // Semantic search
+    if (mode === 'semantic') {
+        const semResults = await semanticSearch(query, options.wikiDir, options.embeddingProvider, limit);
+        return semResults.map((r) => r.path);
+    }
+    // Hybrid: merge BM25 + semantic with reciprocal rank fusion
+    const semResults = await semanticSearch(query, options.wikiDir, options.embeddingProvider, limit);
+    const merged = reciprocalRankFusion(bm25Results, semResults.map((r) => r.path));
+    return merged.slice(0, limit);
+}
+function runBm25Search(query, pagePaths) {
+    const documents = pagePaths.map((path) => {
+        try {
+            const content = readFileSync(path, 'utf-8');
+            const title = basename(path, extname(path));
+            return { path, content, title };
+        }
+        catch {
+            return { path, content: '', title: basename(path) };
+        }
+    });
+    const results = bm25Search(query, documents);
+    return results.map((r) => r.path);
+}
+/**
+ * Reciprocal Rank Fusion: merge two ranked lists into one.
+ * RRF score = sum(1 / (k + rank)) for each list, with k=60.
+ */
+function reciprocalRankFusion(listA, listB, k = 60) {
+    const scores = new Map();
+    for (let i = 0; i < listA.length; i++) {
+        const item = listA[i];
+        if (!item)
+            continue;
+        const prev = scores.get(item) ?? 0;
+        scores.set(item, prev + 1 / (k + i + 1));
+    }
+    for (let i = 0; i < listB.length; i++) {
+        const item = listB[i];
+        if (!item)
+            continue;
+        const prev = scores.get(item) ?? 0;
+        scores.set(item, prev + 1 / (k + i + 1));
+    }
+    return [...scores.entries()]
+        .sort((a, b) => b[1] - a[1])
+        .map(([path]) => path);
+}
+//# sourceMappingURL=index.js.map

package/dist/search/index.js.map

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package/dist/search/semantic.d.ts

@@ -0,0 +1,30 @@
+/**
+ * Semantic search using embeddings.
+ * Loads .embedding.json sidecar files and ranks by cosine similarity.
+ */
+import type { EmbeddingProvider } from '../providers/embeddings.js';
+export interface SemanticSearchResult {
+    path: string;
+    title: string;
+    score: number;
+}
+/**
+ * Search wiki pages by semantic similarity using embeddings.
+ */
+export declare function semanticSearch(query: string, wikiDir: string, embeddingProvider: EmbeddingProvider, limit?: number): Promise<SemanticSearchResult[]>;
+/**
+ * Generate and store an embedding for a wiki page.
+ */
+export declare function embedPage(pagePath: string, content: string, embeddingProvider: EmbeddingProvider): Promise<void>;
+/**
+ * Batch-embed all wiki pages that don't have embedding sidecar files yet.
+ */
+export declare function embedAllPages(wikiDir: string, embeddingProvider: EmbeddingProvider, options?: {
+    force?: boolean;
+    batchSize?: number;
+}): Promise<{
+    embedded: number;
+    skipped: number;
+    errors: number;
+}>;
+//# sourceMappingURL=semantic.d.ts.map

package/dist/search/semantic.d.ts.map

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package/dist/search/semantic.js

@@ -0,0 +1,162 @@
+/**
+ * Semantic search using embeddings.
+ * Loads .embedding.json sidecar files and ranks by cosine similarity.
+ */
+import { readFileSync, existsSync, writeFileSync, readdirSync, statSync } from 'node:fs';
+import { join, basename, extname } from 'node:path';
+import { cosineSimilarity } from '../providers/embeddings.js';
+/**
+ * Search wiki pages by semantic similarity using embeddings.
+ */
+export async function semanticSearch(query, wikiDir, embeddingProvider, limit) {
+    const maxResults = limit ?? 10;
+    // Embed the query (use RETRIEVAL_QUERY task type for queries)
+    const queryEmbedding = await embeddingProvider.embed(query);
+    // Find all embedding sidecar files
+    const embeddingFiles = findEmbeddingFiles(wikiDir);
+    if (embeddingFiles.length === 0) {
+        return [];
+    }
+    // Score each page against the query
+    const results = [];
+    for (const embFile of embeddingFiles) {
+        try {
+            const raw = readFileSync(embFile, 'utf-8');
+            const embedding = JSON.parse(raw);
+            // Corresponding wiki page path
+            const pagePath = embFile.replace(/\.embedding\.json$/, '');
+            if (!existsSync(pagePath))
+                continue;
+            const score = cosineSimilarity(queryEmbedding.values, embedding.vector);
+            const title = basename(pagePath, extname(pagePath));
+            results.push({ path: pagePath, title, score });
+        }
+        catch {
+            // Skip malformed embedding files
+        }
+    }
+    return results
+        .sort((a, b) => b.score - a.score)
+        .slice(0, maxResults);
+}
+/**
+ * Generate and store an embedding for a wiki page.
+ */
+export async function embedPage(pagePath, content, embeddingProvider) {
+    const embedding = await embeddingProvider.embed(content);
+    const result = {
+        vector: embedding.values,
+        model: embedding.model,
+        dimensions: embedding.dimensions,
+        text: content.substring(0, 500), // Store a snippet for debugging
+        timestamp: new Date().toISOString(),
+    };
+    const sidecarPath = pagePath + '.embedding.json';
+    writeFileSync(sidecarPath, JSON.stringify(result), 'utf-8');
+}
+/**
+ * Batch-embed all wiki pages that don't have embedding sidecar files yet.
+ */
+export async function embedAllPages(wikiDir, embeddingProvider, options) {
+    const pages = findMarkdownFiles(wikiDir);
+    const batchSize = options?.batchSize ?? 20;
+    let embedded = 0;
+    let skipped = 0;
+    let errors = 0;
+    // Collect pages that need embedding
+    const toEmbed = [];
+    for (const pagePath of pages) {
+        const sidecarPath = pagePath + '.embedding.json';
+        if (!options?.force && existsSync(sidecarPath)) {
+            skipped++;
+            continue;
+        }
+        try {
+            const content = readFileSync(pagePath, 'utf-8');
+            if (content.trim().length > 0) {
+                toEmbed.push({ path: pagePath, content: content.substring(0, 8000) });
+            }
+        }
+        catch {
+            errors++;
+        }
+    }
+    // Process in batches
+    for (let i = 0; i < toEmbed.length; i += batchSize) {
+        const batch = toEmbed.slice(i, i + batchSize);
+        try {
+            const texts = batch.map((p) => p.content);
+            const embeddings = await embeddingProvider.embedBatch(texts);
+            for (let j = 0; j < batch.length; j++) {
+                const page = batch[j];
+                const emb = embeddings[j];
+                if (!page || !emb)
+                    continue;
+                const result = {
+                    vector: emb.values,
+                    model: emb.model,
+                    dimensions: emb.dimensions,
+                    text: page.content.substring(0, 500),
+                    timestamp: new Date().toISOString(),
+                };
+                writeFileSync(page.path + '.embedding.json', JSON.stringify(result), 'utf-8');
+                embedded++;
+            }
+        }
+        catch {
+            errors += batch.length;
+        }
+    }
+    return { embedded, skipped, errors };
+}
+function findEmbeddingFiles(dir) {
+    const files = [];
+    if (!existsSync(dir))
+        return files;
+    function walk(d) {
+        const entries = readdirSync(d);
+        for (const entry of entries) {
+            const full = join(d, entry);
+            try {
+                const stat = statSync(full);
+                if (stat.isDirectory()) {
+                    walk(full);
+                }
+                else if (entry.endsWith('.embedding.json')) {
+                    files.push(full);
+                }
+            }
+            catch {
+                // Skip inaccessible files
+            }
+        }
+    }
+    walk(dir);
+    return files;
+}
+function findMarkdownFiles(dir) {
+    const files = [];
+    if (!existsSync(dir))
+        return files;
+    function walk(d) {
+        const entries = readdirSync(d);
+        for (const entry of entries) {
+            const full = join(d, entry);
+            try {
+                const stat = statSync(full);
+                if (stat.isDirectory()) {
+                    walk(full);
+                }
+                else if (entry.endsWith('.md')) {
+                    files.push(full);
+                }
+            }
+            catch {
+                // Skip inaccessible files
+            }
+        }
+    }
+    walk(dir);
+    return files;
+}
+//# sourceMappingURL=semantic.js.map

package/dist/search/semantic.js.map

@@ -0,0 +1 @@
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package/dist/templates/agents-md.d.ts

@@ -0,0 +1,2 @@
+export declare function getDefaultAgentsMd(template: string): string;
+//# sourceMappingURL=agents-md.d.ts.map

package/dist/templates/agents-md.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"agents-md.d.ts","sourceRoot":"","sources":["../../src/templates/agents-md.ts"],"names":[],"mappings":"AAAA,wBAAgB,kBAAkB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAoF3D"}

package/dist/templates/agents-md.js

@@ -0,0 +1,85 @@
+export function getDefaultAgentsMd(template) {
+    const now = new Date().toISOString().split('T')[0];
+    return `# AGENTS.md — Wiki Schema & Conventions
+
+> This file tells the LLM how your wiki is structured.
+> You and the LLM co-evolve this over time.
+
+## Domain: ${template}
+
+## Created: ${now}
+
+## Directory Structure
+
+\`\`\`
+raw/              # Immutable source documents (never modified by LLM)
+wiki/             # LLM-generated markdown (the knowledge base)
+  index.md        # Content catalog — every page listed with summary
+  log.md          # Chronological record of operations
+  sources/        # One summary page per ingested source
+  entities/       # Pages for people, organizations, tools, etc.
+  concepts/       # Pages for ideas, frameworks, patterns, etc.
+  syntheses/      # Cross-cutting analyses, comparisons, explorations
+AGENTS.md         # This file — wiki schema and conventions
+config.yaml       # Configuration (LLM provider, sources, schedules)
+\`\`\`
+
+## Page Conventions
+
+Every wiki page has YAML frontmatter:
+
+\`\`\`yaml
+---
+title: "Page Title"
+type: source | entity | concept | synthesis | index | log
+created: "YYYY-MM-DD"
+updated: "YYYY-MM-DD"
+tags: [tag1, tag2]
+sources: ["raw/filename.md"]    # Which raw sources inform this page
+related: ["[[Other Page]]"]     # Explicit cross-references
+summary: "One-line summary"     # Used in index.md
+---
+\`\`\`
+
+## Wikilinks
+
+Use \`[[Page Title]]\` to link between pages. The LLM maintains these links.
+Orphan pages (no inbound links) are flagged by \`llmwiki lint\`.
+
+## Operations
+
+### Ingest
+When a new source is added to raw/:
+1. Read the source completely
+2. Create/update a source summary page in wiki/sources/
+3. Identify entities mentioned → create/update entity pages
+4. Identify concepts discussed → create/update concept pages
+5. Update index.md with new/modified pages
+6. Append to log.md
+
+### Query
+When answering a question:
+1. Read index.md to find relevant pages
+2. Read the relevant pages
+3. Synthesize an answer with [[wikilink]] citations
+4. Optionally file the answer as a synthesis page
+
+### Lint
+Periodically check for:
+- Contradictions between pages
+- Stale claims superseded by newer sources
+- Orphan pages with no inbound links
+- Missing cross-references
+- Important concepts mentioned but lacking their own page
+- Data gaps that could be filled
+
+## Quality Standards
+
+- Every claim should cite its source via wikilink
+- Summaries should be concise (1-3 sentences in frontmatter)
+- Pages should be interconnected (no isolated islands)
+- Prefer updating existing pages over creating new ones
+- Flag contradictions explicitly rather than silently overwriting
+`;
+}
+//# sourceMappingURL=agents-md.js.map

package/dist/templates/agents-md.js.map

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package/dist/templates/config-yaml.d.ts

@@ -0,0 +1,2 @@
+export declare function getDefaultConfig(template: string): string;
+//# sourceMappingURL=config-yaml.d.ts.map

package/dist/templates/config-yaml.d.ts.map

@@ -0,0 +1 @@
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package/dist/templates/config-yaml.js

@@ -0,0 +1,81 @@
+export function getDefaultConfig(template) {
+    return `# llmwiki configuration
+# Docs: https://github.com/naman10parikh/llmwiki
+
+# LLM Provider
+provider: claude          # claude | openai | ollama
+model: ~                  # Leave empty for provider default
+# api_key: ~              # Set via ANTHROPIC_API_KEY or OPENAI_API_KEY env var
+
+# Embeddings (for semantic search)
+embeddings:
+  provider: auto            # gemini | openai | local | auto (auto-detect from env)
+  # model: ~                # Leave empty for provider default
+  # GOOGLE_API_KEY env var for Gemini, OPENAI_API_KEY for OpenAI
+  # 'local' works offline with zero deps (hash-based, lower quality)
+
+# Vault Settings
+vault:
+  name: "My ${capitalize(template)} Wiki"
+  template: ${template}   # personal | research | business | codebase
+
+# Automation 2: External Source Scraping
+# Configure sources to scrape on schedule
+sources: []
+# Example:
+# sources:
+#   - name: "HN Top Stories"
+#     type: rss
+#     url: "https://hnrss.org/frontpage"
+#     schedule: "0 8 * * *"       # Daily at 8am
+#
+#   - name: "GitHub Trending"
+#     type: github
+#     query: "stars:>100 created:>7d language:typescript"
+#     schedule: "0 12 * * MON"    # Weekly on Monday
+#
+#   - name: "Blog Feed"
+#     type: rss
+#     url: "https://example.com/feed.xml"
+#     schedule: "0 */6 * * *"     # Every 6 hours
+
+# Automation 3: Self-Improvement
+improve:
+  enabled: true
+  schedule: "0 3 * * *"          # Daily at 3am
+  threshold: 80                   # Score threshold (0-100)
+  # Set to false to require manual approval before changes
+  auto_apply: false
+
+# Search
+search:
+  engine: bm25                   # bm25 | semantic | hybrid
+  # bm25: keyword search (built-in, no API needed)
+  # semantic: embedding-based similarity (requires embeddings config)
+  # hybrid: combines bm25 + semantic via reciprocal rank fusion
+
+# Processing
+processing:
+  # Audio transcription (requires Whisper or Deepgram)
+  audio:
+    enabled: false
+    provider: whisper            # whisper (local) | deepgram (API)
+    # deepgram_api_key: ~
+
+  # Image description (requires vision-capable model)
+  image:
+    enabled: false
+
+  # PDF extraction
+  pdf:
+    enabled: true
+
+  # Video processing (requires ffmpeg)
+  video:
+    enabled: false
+`;
+}
+function capitalize(s) {
+    return s.charAt(0).toUpperCase() + s.slice(1);
+}
+//# sourceMappingURL=config-yaml.js.map

package/dist/templates/config-yaml.js.map

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package/dist/web/server.d.ts

@@ -0,0 +1,2 @@
+export declare function createServer(vaultRoot: string, port: number): void;
+//# sourceMappingURL=server.d.ts.map

package/dist/web/server.d.ts.map

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+{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../src/web/server.ts"],"names":[],"mappings":"AAyFA,wBAAgB,YAAY,CAAC,SAAS,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAuHlE"}

package/dist/web/server.js

@@ -0,0 +1,170 @@
+import express from 'express';
+import { existsSync, writeFileSync, mkdirSync, readdirSync, statSync } from 'node:fs';
+import { join, basename } from 'node:path';
+import { fileURLToPath } from 'node:url';
+import { getVaultConfig, getVaultStats, listWikiPages, readWikiPage } from '../core/vault.js';
+const __dirname = fileURLToPath(new URL('.', import.meta.url));
+function buildGraph(config) {
+    const pages = listWikiPages(config.wikiDir);
+    const nodesMap = new Map();
+    const links = [];
+    const incomingCount = new Map();
+    for (const pagePath of pages) {
+        const page = readWikiPage(pagePath);
+        const id = basename(pagePath, '.md');
+        const category = page.frontmatter['category'] ?? 'uncategorized';
+        nodesMap.set(id, {
+            id,
+            title: page.title,
+            wordCount: page.wordCount,
+            category,
+            linksOut: page.wikilinks.length,
+            linksIn: 0,
+        });
+        for (const link of page.wikilinks) {
+            links.push({ source: id, target: link });
+            incomingCount.set(link, (incomingCount.get(link) ?? 0) + 1);
+        }
+    }
+    // Update incoming link counts
+    for (const [id, count] of incomingCount) {
+        const node = nodesMap.get(id);
+        if (node) {
+            node.linksIn = count;
+        }
+    }
+    return {
+        nodes: Array.from(nodesMap.values()),
+        links: links.filter((l) => nodesMap.has(l.source) && nodesMap.has(l.target)),
+    };
+}
+function listPages(config) {
+    const pages = listWikiPages(config.wikiDir);
+    return pages.map((p) => {
+        const page = readWikiPage(p);
+        return {
+            title: page.title,
+            path: p,
+            wordCount: page.wordCount,
+            category: page.frontmatter['category'] ?? 'uncategorized',
+            wikilinks: page.wikilinks,
+        };
+    });
+}
+export function createServer(vaultRoot, port) {
+    const app = express();
+    const config = getVaultConfig(vaultRoot);
+    app.use(express.json());
+    app.use(express.urlencoded({ extended: true }));
+    // Serve static files
+    const publicDir = join(__dirname, 'public');
+    if (existsSync(publicDir)) {
+        app.use(express.static(publicDir));
+    }
+    // API: vault status
+    app.get('/api/status', (_req, res) => {
+        try {
+            const stats = getVaultStats(config);
+            res.json(stats);
+        }
+        catch (err) {
+            res.status(500).json({ error: 'Failed to read vault status' });
+        }
+    });
+    // API: list pages
+    app.get('/api/pages', (_req, res) => {
+        try {
+            const pages = listPages(config);
+            res.json(pages);
+        }
+        catch (err) {
+            res.status(500).json({ error: 'Failed to list pages' });
+        }
+    });
+    // API: read single page
+    app.get('/api/pages/:title', (req, res) => {
+        try {
+            const title = req.params['title'];
+            if (!title) {
+                res.status(400).json({ error: 'Missing title' });
+                return;
+            }
+            const pages = listWikiPages(config.wikiDir);
+            const match = pages.find((p) => basename(p, '.md') === title);
+            if (!match) {
+                res.status(404).json({ error: 'Page not found' });
+                return;
+            }
+            const page = readWikiPage(match);
+            res.json(page);
+        }
+        catch (err) {
+            res.status(500).json({ error: 'Failed to read page' });
+        }
+    });
+    // API: knowledge graph data
+    app.get('/api/graph', (_req, res) => {
+        try {
+            const graph = buildGraph(config);
+            res.json(graph);
+        }
+        catch (err) {
+            res.status(500).json({ error: 'Failed to build graph' });
+        }
+    });
+    // API: upload raw file for ingestion
+    app.post('/api/upload', (req, res) => {
+        const chunks = [];
+        req.on('data', (chunk) => chunks.push(chunk));
+        req.on('end', () => {
+            const filename = req.headers['x-filename'];
+            if (!filename) {
+                res.status(400).json({ error: 'Missing x-filename header' });
+                return;
+            }
+            const rawDir = config.rawDir;
+            if (!existsSync(rawDir)) {
+                mkdirSync(rawDir, { recursive: true });
+            }
+            const dest = join(rawDir, basename(filename));
+            writeFileSync(dest, Buffer.concat(chunks));
+            res.json({ status: 'uploaded', path: dest });
+        });
+    });
+    // API: raw files list
+    app.get('/api/raw', (_req, res) => {
+        try {
+            const rawDir = config.rawDir;
+            if (!existsSync(rawDir)) {
+                res.json([]);
+                return;
+            }
+            const files = readdirSync(rawDir)
+                .filter((f) => !f.startsWith('.'))
+                .map((f) => {
+                const full = join(rawDir, f);
+                const stat = statSync(full);
+                return { name: f, size: stat.size, modified: stat.mtime.toISOString() };
+            });
+            res.json(files);
+        }
+        catch (err) {
+            res.status(500).json({ error: 'Failed to list raw files' });
+        }
+    });
+    // Serve index.html for all other routes (SPA)
+    app.get('/{*path}', (_req, res) => {
+        const indexPath = join(publicDir, 'index.html');
+        if (existsSync(indexPath)) {
+            res.sendFile(indexPath);
+        }
+        else {
+            res.status(404).send('Web UI not found. Rebuild with pnpm build.');
+        }
+    });
+    app.listen(port, () => {
+        console.log(`\n  llmwiki web UI running at http://localhost:${port}`);
+        console.log(`  Vault: ${vaultRoot}\n`);
+    });
+}
+//# sourceMappingURL=server.js.map

package/dist/web/server.js.map

@@ -0,0 +1 @@
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