weavatrix 0.2.14 → 0.2.16

package/src/analysis/findings.js

@@ -6,6 +6,18 @@ import { createHash } from "node:crypto";
 export const SEVERITY_ORDER = ["critical", "high", "medium", "low", "info"];
 export const FINDING_CATEGORIES = ["unused", "structure", "vulnerability", "malware"];
 
+export function dependencyVerification(manifest, imports, decision, mapping) {
+  return {
+    evidenceModel: "MANIFEST_PLUS_INDEXED_SOURCE",
+    decision,
+    manifestDeclaration: { status: "FOUND", file: manifest },
+    indexedSourceImports: imports.length
+      ? { status: "FOUND", count: imports.length, files: [...new Set(imports.map((item) => item.file))].slice(0, 10) }
+      : { status: "ZERO_FOUND", completeness: "COMPLETE_FOR_GRAPH_SCOPE", count: 0, files: [] },
+    mapping,
+  };
+}
+
 // Stable id: survives re-runs so the UI can persist expand/dismiss state per finding.
 export function makeFinding(f) {
   const cycleIdentity = Array.isArray(f.cycleMembers)

package/src/analysis/go-dependency-evidence.js

@@ -0,0 +1,68 @@
+import { dirname } from "node:path";
+import { createRepoBoundary } from "../repo-path.js";
+import { computeGoDepFindings } from "./dep-check-ecosystems.js";
+import { listRepoFiles, readRepoText } from "./internal-audit.collect.js";
+import { parseGoMod } from "./manifests.js";
+import { makeFinding } from "./findings.js";
+
+const rootOf = (file) => {
+  const root = dirname(String(file || "").replace(/\\/g, "/"));
+  return root === "." ? "" : root;
+};
+const owns = (root, file) => !root || file === root || String(file || "").replace(/\\/g, "/").startsWith(`${root}/`);
+
+export function collectGoDependencyEvidence(repoRoot, { files = listRepoFiles(repoRoot), externalImports = [], nonRuntimeRoots = [] } = {}) {
+  const boundary = createRepoBoundary(repoRoot);
+  const manifests = files.filter((file) => /(^|\/)go\.mod$/i.test(file));
+  const scopes = manifests.map((file) => ({ file, root: rootOf(file), parsed: parseGoMod(readRepoText(boundary, file)) }))
+    .sort((left, right) => right.root.length - left.root.length || left.root.localeCompare(right.root));
+  const importsByScope = new Map(scopes.map((scope) => [scope, []]));
+  for (const entry of externalImports) {
+    if (entry.ecosystem !== "Go") continue;
+    const owner = scopes.find((scope) => owns(scope.root, entry.file));
+    if (owner) importsByScope.get(owner).push(entry);
+  }
+  const findings = [], declared = new Set(), issues = [];
+  if (!scopes.length) {
+    const missing = new Map();
+    for (const entry of externalImports.filter((item) => item.ecosystem === "Go" && item.pkg && !item.builtin && !item.unresolved)) {
+      if (!missing.has(entry.pkg)) missing.set(entry.pkg, entry);
+    }
+    for (const [name, entry] of missing) findings.push(makeFinding({
+      category: "unused", rule: "missing-dep", severity: "low", confidence: "high",
+      title: `Go import without a module manifest: ${name}`,
+      reason: "An indexed external Go import exists, but no go.mod was discovered.",
+      detail: `"${entry.spec || name}" is imported by ${entry.file}, but no go.mod exists in the repository.`,
+      package: name, file: entry.file, line: entry.line || 0, source: "internal",
+      verification: { evidenceModel: "MANIFEST_PLUS_INDEXED_SOURCE", decision: "ACTION_REQUIRED", manifestDeclaration: { status: "NOT_PRESENT" }, indexedSourceImports: { status: "FOUND", count: 1, files: [entry.file] }, mapping: "Go module prefix" },
+      fixHint: "initialize or restore the owning Go module manifest",
+    }));
+  }
+  for (const scope of scopes) {
+    if (!scope.parsed.module) issues.push(`${scope.file}: module directive is missing or unreadable`);
+    const result = computeGoDepFindings({ externalImports: importsByScope.get(scope), goMod: scope.parsed, nonRuntimeRoots });
+    findings.push(...result.findings.map((finding) => ({
+      ...finding,
+      manifest: scope.file,
+      verification: finding.rule === "missing-dep"
+        ? { evidenceModel: "MANIFEST_PLUS_INDEXED_SOURCE", decision: "ACTION_REQUIRED", manifestDeclaration: { status: "NOT_FOUND", file: scope.file }, indexedSourceImports: { status: "FOUND", count: finding.evidence?.length || 1, files: (finding.evidence || []).map((item) => item.file) }, mapping: "longest go.mod module prefix" }
+        : { evidenceModel: "MANIFEST_PLUS_INDEXED_SOURCE", decision: "REVIEW_REQUIRED", manifestDeclaration: { status: "FOUND", file: scope.file }, indexedSourceImports: { status: "ZERO_FOUND", completeness: "COMPLETE_FOR_GRAPH_SCOPE", count: 0, files: [] }, mapping: "longest go.mod module prefix" },
+    })));
+    for (const name of result.declared) declared.add(`${scope.root || "."}:${name}`);
+  }
+  const present = manifests.length > 0;
+  return {
+    present,
+    status: present ? "CHECKED" : "NOT_PRESENT",
+    completeness: present ? (issues.length ? "PARTIAL" : "COMPLETE") : "NOT_APPLICABLE",
+    manifests,
+    declared,
+    findings,
+    reasons: issues,
+    reason: !present
+      ? "No go.mod was discovered."
+      : issues.length
+        ? `Go imports and requirements were checked across ${manifests.length} module(s), but ${issues.length} module descriptor(s) were incomplete.`
+        : `Every discovered go.mod scope (${manifests.length}) was compared with indexed Go imports, including direct/indirect requirements and replace directives.`,
+  };
+}

package/src/analysis/health-capabilities.js

@@ -38,7 +38,7 @@ export function buildHealthCapabilityMatrix({
   const unsupportedDependencyRows = ecosystemRows.filter((item) => item.status === "NOT_SUPPORTED");
   const noDependencyEvidence = ecosystemRows.length === 0;
   const onlyUnsupportedDependencies = unsupportedDependencyRows.length > 0 && supportedDependencyRows.length === 0;
-  const advisorySupported = supportedDependencyRows.some((item) => ["npm", "go", "python"].includes(item.ecosystem));
+  const advisorySupported = supportedDependencyRows.some((item) => ["npm", "go", "python", "rust", "maven", "gradle"].includes(item.ecosystem));
   const malwareSupported = supportedDependencyRows.some((item) => ["npm", "go", "python"].includes(item.ecosystem));
   const coverageSupported = [...languages].some((language) => ["javascript/typescript", "python", "go"].includes(language));
   const runtimeFiles = Number(correctnessCoverage.runtimeCorrectnessFiles || 0);

package/src/analysis/http-contracts/analysis.js

@@ -67,6 +67,7 @@ export function analyzeHttpContracts(input = {}) {
       autoDiscoverWrappers: descriptor.autoDiscoverWrappers ?? input.autoDiscoverWrappers,
       graph: descriptor.graph,
       includeTests: descriptor.includeTests ?? input.includeTests,
+      runtimeValues: descriptor.runtimeValues || input.runtimeValues,
     });
     if (detected.truncated) completeness.push(`${id}: client scan cap reached`);
     for (const reason of detected.reasons || []) completeness.push(`${id}: ${reason}`);
@@ -141,6 +142,7 @@ export function analyzeHttpContracts(input = {}) {
     })))
     .sort((left, right) => left.clientRepo.localeCompare(right.clientRepo) || left.file.localeCompare(right.file) || left.line - right.line);
   if (uncertainAll.length > limits.maxUncertain) completeness.push("uncertain callsite cap reached");
+  if (uncertainAll.length) completeness.push(`${uncertainAll.length} dynamic HTTP callsite(s) remain UNKNOWN`);
   if (results.some((endpoint) => !endpoint.affected.complete)) completeness.push("affected-file traversal cap reached");
 
   return {

package/src/analysis/http-contracts/client-call-detection.js

@@ -55,6 +55,7 @@ export function detectHttpClientCalls(repoRoot, codeFiles, options = {}) {
       clientNames,
       normalizedWrappers: [...configured, ...scopedDiscovered],
       maxCalls: remaining,
+      runtimeValues: options.runtimeValues,
     });
     calls.push(...extracted.calls);
     if (extracted.truncated) truncated = true;

package/src/analysis/http-contracts/client-call-parser.js

@@ -91,7 +91,7 @@ function templateArgument(text, start, constants = null, requireStatic = false)
     }
     if (depth !== 0) return null;
     const expression = text.slice(index + 2, cursor - 1).trim();
-    if (/^[A-Za-z_$][\w$]*$/.test(expression) && constants?.has(expression)) {
+    if (/^[A-Za-z_$][\w$]*(?:\.[A-Za-z_$][\w$]*)*$/.test(expression) && constants?.has(expression)) {
       value += constants.get(expression);
       index = cursor - 1;
       continue;
@@ -109,7 +109,7 @@ function templateArgument(text, start, constants = null, requireStatic = false)
   return null;
 }
 
-function extractStaticStringConstants(text) {
+function extractStaticStringConstants(text, runtimeValues = {}) {
   const source = String(text || "");
   const mask = maskNonCode(source);
   const declarations = [];
@@ -120,7 +120,8 @@ function extractStaticStringConstants(text) {
     while (/\s/.test(source[start] || "")) start++;
     declarations.push({ name: match[1], start });
   }
-  const constants = new Map();
+  const constants = new Map(Object.entries(runtimeValues || {})
+    .filter(([key, value]) => /^[A-Za-z_$][\w$]*(?:\.[A-Za-z_$][\w$]*)*$/.test(key) && typeof value === "string" && value.length <= 2_048));
   for (const item of declarations) {
     const quote = source[item.start];
     if (quote !== "'" && quote !== '"') continue;
@@ -138,6 +139,19 @@ function extractStaticStringConstants(text) {
     }
     if (!changed) break;
   }
+  for (const item of declarations) {
+    if (constants.has(item.name)) continue;
+    const rest = source.slice(item.start);
+    const expression = /^[A-Za-z_$][\w$]*(?:\.[A-Za-z_$][\w$]*)*/.exec(rest)?.[0];
+    if (expression && constants.has(expression)) constants.set(item.name, constants.get(expression));
+    if (constants.has(item.name)) continue;
+    const fallback = /(?:\|\||\?\?)\s*(["'])/.exec(rest.slice(0, 500));
+    if (fallback) {
+      const start = item.start + fallback.index + fallback[0].lastIndexOf(fallback[1]);
+      const parsed = quotedArgument(source, start, fallback[1]);
+      if (parsed && parsed.value.length <= 2_048) constants.set(item.name, parsed.value);
+    }
+  }
   return constants;
 }
 
@@ -211,7 +225,7 @@ const escapeRegex = (value) => String(value).replace(/[|\\{}()[\]^$+*?.-]/g, "\\
 export function extractHttpClientCallsFromText(text, file, options = {}) {
   const source = String(text || "");
   const mask = maskNonCode(source);
-  const constants = extractStaticStringConstants(source);
+  const constants = extractStaticStringConstants(source, options.runtimeValues);
   const allowed = normalizedClientNames(options.clientNames);
   const wrappers = normalizeHttpWrapperDescriptors(options.wrappers, "input").concat(Array.isArray(options.normalizedWrappers) ? options.normalizedWrappers : []);
   const maxCalls = boundedInteger(options.maxCalls, HTTP_CONTRACT_DEFAULTS.maxCallsPerClient, 1, HTTP_CONTRACT_HARD_LIMITS.maxCallsPerClient);

package/src/analysis/internal-audit/dependency-health.js

@@ -10,6 +10,7 @@ export function buildDependencyHealth({
   goDep,
   pyDep,
   jvmDependencies,
+  cargoDep,
   externalImports,
   findings,
   packageScopes,
@@ -20,8 +21,8 @@ export function buildDependencyHealth({
   const dependencyFindings = findings.filter((finding) => ["unused-dep", "missing-dep", "duplicate-dep"].includes(finding.rule));
   const graphComplete = !((graph.graphBuildMode && graph.graphBuildMode !== "full") || graph.graphBuildScope);
   const npmManifests = repoFiles.filter((file) => /(^|\/)package\.json$/i.test(file));
-  const goManifests = repoFiles.filter((file) => /(^|\/)go\.mod$/i.test(file));
   const pythonManifests = [...new Set((pyManifest.scopes || []).flatMap((scope) => scope.manifests || []))];
+  const publicEvidence = ({ findings: _findings, ...item }) => item;
   const ecosystems = {
     npm: {
       ecosystem: "npm",
@@ -36,28 +37,29 @@ export function buildDependencyHealth({
     },
     go: {
       ecosystem: "go",
-      present: goManifests.length > 0,
-      status: goManifests.length ? "CHECKED" : "NOT_PRESENT",
-      completeness: goManifests.length ? "PARTIAL" : "NOT_APPLICABLE",
-      manifests: goManifests,
+      present: goDep.present,
+      status: goDep.status,
+      completeness: graphComplete && goDep.completeness === "COMPLETE" ? "COMPLETE" : goDep.completeness,
+      manifests: goDep.manifests,
       declared: goDep.declared.size,
-      reason: goManifests.length
-        ? "Go dependency checks use indexed imports and the root go.mod; nested modules and build-tag-specific resolution are not fully modeled."
-        : "No go.mod was discovered.",
+      reason: goDep.reason,
     },
     python: {
       ecosystem: "python",
       present: pyManifest.present,
       status: pyManifest.present ? "CHECKED" : "NOT_PRESENT",
-      completeness: pyManifest.present ? "PARTIAL" : "NOT_APPLICABLE",
+      completeness: pyManifest.present ? (graphComplete && pyManifest.completeness === "COMPLETE" ? "COMPLETE" : "PARTIAL") : "NOT_APPLICABLE",
       manifests: pythonManifests,
       declared: pyDep.declared.size,
       reason: pyManifest.present
-        ? "Python declarations were compared with indexed imports; environment markers, extras and dynamic imports remain bounded static evidence."
+        ? pyManifest.reasons?.length
+          ? `Python declarations were compared with indexed imports, but ${pyManifest.reasons.join("; ")}.`
+          : "Every discovered supported Python manifest scope was compared with indexed imports. Environment markers and extras are normalized as declarations; runtime-computed imports remain outside static proof."
         : "No supported Python dependency manifest was discovered.",
     },
-    maven: { ecosystem: "maven", ...jvmDependencies.maven },
-    gradle: { ecosystem: "gradle", ...jvmDependencies.gradle },
+    maven: { ecosystem: "maven", ...publicEvidence(jvmDependencies.maven), completeness: jvmDependencies.maven.present && !graphComplete ? "PARTIAL" : jvmDependencies.maven.completeness },
+    gradle: { ecosystem: "gradle", ...publicEvidence(jvmDependencies.gradle), completeness: jvmDependencies.gradle.present && !graphComplete ? "PARTIAL" : jvmDependencies.gradle.completeness },
+    rust: { ecosystem: "rust", ...publicEvidence(cargoDep), declared: cargoDep.declared.size, completeness: cargoDep.present && !graphComplete ? "PARTIAL" : cargoDep.completeness },
   };
   const present = Object.values(ecosystems).filter((item) => item.present);
   const status = present.length === 0
@@ -68,7 +70,7 @@ export function buildDependencyHealth({
   const importedPackages = new Set(externalImports
     .filter((entry) => entry?.pkg && !entry.builtin && !entry.unresolved)
     .map((entry) => `${entry.ecosystem || (/\.java$/i.test(entry.file || "") ? "maven-unresolved" : "npm")}:${entry.pkg}`));
-  const supportedDeclared = dep.declared.size + goDep.declared.size + pyDep.declared.size;
+  const supportedDeclared = dep.declared.size + goDep.declared.size + pyDep.declared.size + cargoDep.declared.size;
   const jvmDeclared = jvmDependencies.maven.declared + jvmDependencies.gradle.declared;
   const measuredCoverage = readCoverageForRepo(repoPath, sourceFiles);
   const healthCapabilities = buildHealthCapabilityMatrix({

package/src/analysis/internal-audit/python-manifests.js

@@ -1,4 +1,4 @@
-import {dirname} from 'node:path'
+import {dirname, posix} from 'node:path'
 import {createRepoBoundary} from '../../repo-path.js'
 import {parseRequirementsNames, parsePyprojectDeps, parsePipfileDeps, pep503} from '../manifests.js'
 import {listRepoFiles, readRepoText} from './repo-files.js'
@@ -25,6 +25,8 @@ export function collectPyManifest(repoRoot) {
         scope.deps.push(...parsedDeps.map((dep) => ({...dep, manifest})))
     }
     const files = listRepoFiles(repoRoot)
+    const fileSet = new Set(files.map((file) => file.replace(/\\/g, '/')))
+    const reasons = []
     for (const file of files.filter((name) => /(^|\/)requirements[\w.-]*\.(?:txt|in)$/i.test(name)
         || /(^|\/)requirements\/[^/]+\.(?:txt|in)$/i.test(name))) {
         const text = readRepoText(boundary, file)
@@ -33,14 +35,23 @@ export function collectPyManifest(repoRoot) {
         const root = /(^|\/)requirements$/i.test(parent) ? normalizeRoot(dirname(parent)) : parent
         const dev = /dev|test|lint|doc|ci/i.test(file.slice(file.lastIndexOf('/') + 1))
         addManifest(root, file, parseRequirementsNames(text).map((dep) => ({...dep, dev})))
+        for (const match of text.matchAll(/^\s*(?:-r|--requirement|-c|--constraint)\s+(?:=\s*)?([^\s#]+)/gmi)) {
+            const parentDir = normalizeRoot(dirname(file))
+            const target = normalizeRoot(posix.normalize(`${parentDir ? `${parentDir}/` : ''}${match[1].replace(/\\/g, '/')}`))
+            if (!target || target.startsWith('../') || !fileSet.has(target)) reasons.push(`${file}: referenced requirements file ${match[1]} was not discovered`)
+        }
     }
     for (const file of files.filter((name) => /(^|\/)pyproject\.toml$/i.test(name))) {
-        const parsed = parsePyprojectDeps(readRepoText(boundary, file))
-        addManifest(dirname(file), file, parsed.deps, parsed.present)
+        const text = readRepoText(boundary, file)
+        const parsed = parsePyprojectDeps(text)
+        const dependencyManifest = parsed.present || /^\s*\[(?:project|tool\.poetry)\]/m.test(text || '')
+        addManifest(dirname(file), file, parsed.deps, dependencyManifest)
+        if (/\bdynamic\s*=\s*\[[^\]]*["']dependencies["']/s.test(text || '')) reasons.push(`${file}: project dependencies are dynamic`)
     }
     for (const file of files.filter((name) => /(^|\/)Pipfile$/i.test(name))) {
-        const parsed = parsePipfileDeps(readRepoText(boundary, file))
-        addManifest(dirname(file), file, parsed.deps, parsed.present)
+        const text = readRepoText(boundary, file)
+        const parsed = parsePipfileDeps(text)
+        addManifest(dirname(file), file, parsed.deps, parsed.present || /^\s*\[(?:packages|dev-packages)\]/mi.test(text || ''))
     }
     const normalizedScopes = [...scopes.values()]
         .map((scope) => {
@@ -61,5 +72,7 @@ export function collectPyManifest(repoRoot) {
         present: normalizedScopes.some((scope) => scope.present),
         deps: normalizedScopes.flatMap((scope) => scope.deps),
         scopes: normalizedScopes,
+        completeness: reasons.length ? 'PARTIAL' : 'COMPLETE',
+        reasons: [...new Set(reasons)].sort(),
     }
 }

package/src/analysis/internal-audit/supply-chain.js

@@ -12,6 +12,8 @@ const removalHint = (pkg) => {
   if (pkg?.ecosystem === "npm") return `npm uninstall ${pkg.name} and audit what it touched`;
   if (pkg?.ecosystem === "PyPI") return `remove ${pkg.name} from the Python environment/manifest and audit what it touched`;
   if (pkg?.ecosystem === "Go") return `remove ${pkg.name} from the Go module graph, run go mod tidy, and audit what it touched`;
+  if (pkg?.ecosystem === "crates.io") return `cargo remove ${pkg.name}, rebuild every feature/target, and audit what it touched`;
+  if (pkg?.ecosystem === "Maven") return `remove or upgrade ${pkg.name} in Maven/Gradle, refresh the resolved graph, and audit what it touched`;
   return `remove ${pkg?.name || "the package"} with its ecosystem's package manager and audit what it touched`;
 };
 

package/src/analysis/internal-audit.reach.js

@@ -98,6 +98,26 @@ export function entryFiles(graph, pkgOrScopes, dynamicTargets = new Set(), { dec
     const f = n.source_file;
     if (ENTRY_FILE.test(f) || isFrameworkEntryFile(f) || /\.d\.[cm]?ts$/i.test(f) || TEST_FILE_RE.test(f) || /\.html?$/i.test(f) || pe.has(f) || /(^|\/)[^/]*\.config\.[a-z]+$/i.test(f)) entries.add(f);
   }
+  // Classic/static HTML pages load scripts, styles and other assets without a
+  // JavaScript import edge. Treat an exact local src/href target as an entry
+  // surface so a deployed asset is not mislabeled orphan/dead.
+  for (const [rawFile, rawText] of sources || []) {
+    const htmlFile = String(rawFile || "").replace(/\\/g, "/");
+    if (!/\.html?$/i.test(htmlFile)) continue;
+    const htmlDir = posix.dirname(htmlFile);
+    const attr = /\b(?:src|href)\s*=\s*["']([^"']+)["']/gi;
+    let match;
+    while ((match = attr.exec(String(rawText || "")))) {
+      const rawTarget = String(match[1] || "").trim().split(/[?#]/, 1)[0];
+      if (!rawTarget || /^(?:[a-z][a-z0-9+.-]*:|\/\/|#)/i.test(rawTarget)) continue;
+      const relative = rawTarget.replace(/^\/+/, "");
+      const candidates = rawTarget.startsWith("/")
+        ? [posix.normalize(posix.join(htmlDir, relative)), posix.normalize(relative)]
+        : [posix.normalize(posix.join(htmlDir, relative))];
+      const target = candidates.find((candidate) => fileSet.has(candidate));
+      if (target) entries.add(target);
+    }
+  }
   for (const evidence of springConventionEntries(sources, fileSet)) {
     entries.add(evidence.file);
     conventionEvidence.push(evidence);

package/src/analysis/internal-audit.run.js

@@ -1,7 +1,7 @@
 import { existsSync } from "node:fs";
 import { basename, join } from "node:path";
 import { computeDead, computeUnusedExports } from "./dead-check.js";
-import { computeGoDepFindings, computePyDepFindings, computeScopedDepFindings } from "./dep-check.js";
+import { computePyDepFindings, computeScopedDepFindings } from "./dep-check.js";
 import { computeStructureFindings } from "./dep-rules.js";
 import { makeFinding, sortFindings, summarizeFindings } from "./findings.js";
 import { graphOutDirForRepo } from "../graph/layout.js";
@@ -15,17 +15,17 @@ import {
   listRepoFiles,
   readJson,
   readRepoJson,
-  readRepoText,
   workspacePkgNames,
 } from "./internal-audit.collect.js";
 import { computeReachability, entryFiles } from "./internal-audit.reach.js";
-import { parseGoMod } from "./manifests.js";
 import { PATH_CLASS_NAMES, createPathClassifier, hasPathClass } from "../path-classification.js";
 import { createRepoBoundary } from "../repo-path.js";
 import { analyzeSourceCorrectness } from "./source-correctness.js";
 import { collectJvmDependencyEvidence } from "./jvm-dependency-evidence.js";
 import { buildDependencyHealth } from "./internal-audit/dependency-health.js";
 import { runSupplyChainChecks } from "./internal-audit/supply-chain.js";
+import { collectGoDependencyEvidence } from "./go-dependency-evidence.js";
+import { collectCargoDependencyEvidence } from "./cargo-dependency-evidence.js";
 
 export async function runInternalAudit(repoPath, {
   graph,
@@ -86,11 +86,11 @@ export async function runInternalAudit(repoPath, {
     packageScopes,
     workspacePkgNames: workspacePkgNames(repoPath, pkg),
     configTexts,
+    sourceTexts: sources,
     nonRuntimeRoots,
     sourceFiles: [...sources.keys()],
   });
-  const goModText = readRepoText(boundary, "go.mod");
-  const goDep = computeGoDepFindings({ externalImports, goMod: goModText != null ? parseGoMod(goModText) : null, nonRuntimeRoots });
+  const goDep = collectGoDependencyEvidence(repoPath, { files: repoFiles, externalImports, nonRuntimeRoots });
   const asList = (value) => Array.isArray(value) ? value : typeof value === "string" ? [value] : [];
   const pyRules = rules.python || {}, depRules = rules.dependencies || {};
   const managedPython = [...new Set([
@@ -108,12 +108,17 @@ export async function runInternalAudit(repoPath, {
     ignoredDependencies: ignoredPython,
     nonRuntimeRoots,
   });
-  const jvmDependencies = collectJvmDependencyEvidence(repoPath, { files: repoFiles });
+  const jvmDependencies = collectJvmDependencyEvidence(repoPath, { files: repoFiles, externalImports });
+  const cargoDep = collectCargoDependencyEvidence(repoPath, { files: repoFiles, externalImports });
 
   const externalImportFiles = new Set(externalImports.filter((entry) => entry.pkg && !entry.builtin).map((entry) => entry.file));
   const structure = computeStructureFindings(graph, { rules, entrySet: entries, externalImportFiles });
   const correctness = analyzeSourceCorrectness(sources, { isNonProductPath });
-  const findings = [...dep.findings, ...goDep.findings, ...pyDep.findings, ...correctness.findings];
+  const findings = [
+    ...dep.findings, ...goDep.findings, ...pyDep.findings,
+    ...jvmDependencies.maven.findings, ...jvmDependencies.gradle.findings, ...cargoDep.findings,
+    ...correctness.findings,
+  ];
   const deadFileSet = new Set(dead.deadFiles.map((finding) => finding.file));
   for (const finding of structure.findings) {
     if (!(finding.rule === "orphan-file" && deadFileSet.has(finding.file))) findings.push(finding);
@@ -189,6 +194,7 @@ export async function runInternalAudit(repoPath, {
     goDep,
     pyDep,
     jvmDependencies,
+    cargoDep,
     externalImports,
     findings: sorted,
     packageScopes,

package/src/analysis/jvm-dependency-evidence.js

@@ -1,69 +1,115 @@
-// Maven/Gradle manifest presence and bounded declaration counts. We intentionally do not map Java
-// imports to artifacts: package-to-artifact resolution needs a real build model and claiming 0/0 from
-// source regexes would be worse than an explicit NOT_SUPPORTED/PARTIAL state.
 import { createRepoBoundary } from "../repo-path.js";
+import { dependencyVerification, makeFinding } from "./findings.js";
+import { parseGradleDependencies, parseGradleVersionCatalog, parseMavenPom } from "./jvm-manifests.js";
 import { listRepoFiles, readRepoText } from "./internal-audit.collect.js";
 
-function mavenDeclarations(text) {
-  const source = String(text || "")
-    .replace(/<!--[\s\S]*?-->/g, " ")
-    .replace(/<dependencyManagement\b[\s\S]*?<\/dependencyManagement>/gi, " ");
-  const identities = [];
-  const re = /<dependency\b[^>]*>([\s\S]*?)<\/dependency>/gi;
-  let match;
-  while ((match = re.exec(source))) {
-    const group = /<groupId>\s*([^<]+?)\s*<\/groupId>/i.exec(match[1])?.[1]?.trim() || "";
-    const artifact = /<artifactId>\s*([^<]+?)\s*<\/artifactId>/i.exec(match[1])?.[1]?.trim() || "";
-    if (artifact) identities.push(group ? `${group}:${artifact}` : artifact);
-  }
-  return identities;
+const normalize = (value) => String(value || "").toLowerCase().replace(/[^a-z0-9]+/g, "");
+const javaBuiltin = (name) => /^(?:java|jdk|sun)\.|^(?:org\.w3c\.dom|org\.xml\.sax)(?:\.|$)/.test(name);
+
+function mappingScore(spec, dependency) {
+  const imported = String(spec || "").replace(/\.\*$/, "");
+  if (!imported || !dependency.group) return 0;
+  if (imported === dependency.group || imported.startsWith(`${dependency.group}.`)) return 1_000 + dependency.group.length;
+  const compactImport = normalize(imported), compactArtifact = normalize(dependency.artifact);
+  if (compactArtifact.length >= 4 && compactImport.includes(compactArtifact)) return 500 + compactArtifact.length;
+  const artifactTokens = String(dependency.artifact).toLowerCase().split(/[-_.]+/).filter((part) => part.length >= 4 && !["core", "java", "client", "common", "api"].includes(part));
+  const hits = artifactTokens.filter((part) => imported.toLowerCase().split(".").some((segment) => normalize(segment) === normalize(part))).length;
+  return hits ? 100 + hits : 0;
+}
+
+function bestDependency(spec, dependencies) {
+  const ranked = dependencies.map((dependency) => ({ dependency, score: mappingScore(spec, dependency) }))
+    .filter((item) => item.score > 0).sort((left, right) => right.score - left.score || left.dependency.name.localeCompare(right.dependency.name));
+  if (!ranked.length || (ranked[1] && ranked[1].score === ranked[0].score)) return null;
+  return ranked[0].dependency;
 }
 
-function gradleDeclarations(text) {
-  const source = String(text || "")
-    .replace(/\/\*[\s\S]*?\*\//g, " ")
-    .replace(/(^|\s)\/\/.*$/gm, "$1");
-  const declarations = [];
-  const configurations = "api|implementation|compileOnly|runtimeOnly|annotationProcessor|kapt|testImplementation|testCompileOnly|testRuntimeOnly|androidTestImplementation";
-  const line = new RegExp(`^\\s*(?:${configurations})\\s*(?:\\(\\s*)?([^\\r\\n]+)`, "gmi");
-  let match;
-  while ((match = line.exec(source))) {
-    const expression = match[1].trim().replace(/[),;]+\s*$/, "");
-    const coordinate = /["']([^"']+:[^"']+)["']/.exec(expression)?.[1] || "";
-    const catalog = /\blibs(?:\.[A-Za-z_]\w*)+/.exec(expression)?.[0] || "";
-    declarations.push(coordinate || catalog || "unresolved-declaration");
+function analyze(ecosystem, manifests, dependencies, imports, unresolvedDeclarations, mappingDependencies = dependencies, includeMissing = true) {
+  const findings = [], used = new Map(), missing = new Map();
+  const owned = new Set(dependencies.map((dependency) => dependency.name));
+  for (const item of imports) {
+    const dependency = bestDependency(item.spec || item.pkg, mappingDependencies);
+    if (dependency) {
+      if (owned.has(dependency.name)) {
+        const list = used.get(dependency.name) || [];
+        list.push(item); used.set(dependency.name, list);
+      }
+    } else {
+      const key = item.spec || item.pkg;
+      const list = missing.get(key) || [];
+      list.push(item); missing.set(key, list);
+    }
   }
-  return declarations;
+  const runtimeOnly = /runtime|provided|classpath|annotationProcessor|kapt/i;
+  for (const dependency of dependencies) {
+    const evidence = used.get(dependency.name) || [];
+    if (evidence.length || dependency.optional || runtimeOnly.test(dependency.scope || "")) continue;
+    findings.push(makeFinding({
+      category: "unused", rule: "unused-dep", severity: "low", confidence: "low",
+      title: `Unused ${ecosystem} dependency: ${dependency.name}`,
+      reason: "No indexed Java import mapped to this declared artifact; reflection, service loading, generated code and runtime-only use remain possible.",
+      detail: `"${dependency.name}" is declared in ${dependency.file}, but no indexed Java import maps to it. Review framework, reflection, ServiceLoader and generated-source use before removal.`,
+      package: dependency.name, version: dependency.version, manifest: dependency.file, source: "internal",
+      verification: dependencyVerification(dependency.file, [], "REVIEW_REQUIRED", "group-prefix/artifact-token"),
+      fixHint: `remove ${dependency.name} only after the ${ecosystem} build and tests confirm it is unused`,
+    }));
+  }
+  for (const [spec, evidence] of includeMissing ? missing : []) {
+    if (javaBuiltin(spec)) continue;
+    findings.push(makeFinding({
+      category: "unused", rule: "missing-dep", severity: "medium", confidence: "medium",
+      title: `Unmapped Java import: ${spec}`,
+      reason: `The indexed Java import did not map to any declared ${ecosystem} artifact.`,
+      detail: `"${spec}" is imported by ${evidence.length} file(s), but no ${ecosystem} declaration has a matching group prefix or artifact token. Add the owning artifact or configure/build the source that supplies it.`,
+      package: spec, file: evidence[0].file, line: evidence[0].line || 0,
+      evidence: evidence.slice(0, 5).map((item) => ({ file: item.file, line: item.line || 0, snippet: item.spec || "" })),
+      source: "internal",
+      verification: { evidenceModel: "MANIFEST_PLUS_INDEXED_SOURCE", decision: "ACTION_REQUIRED", manifestDeclaration: { status: "NOT_FOUND", files: manifests }, indexedSourceImports: { status: "FOUND", count: evidence.length, files: evidence.map((item) => item.file).slice(0, 10) }, mapping: "group-prefix/artifact-token" },
+      fixHint: `identify the artifact that owns ${spec} and declare it in the nearest ${ecosystem} manifest`,
+    }));
+  }
+  const present = manifests.length > 0;
+  return {
+    present,
+    status: present ? "CHECKED" : "NOT_PRESENT",
+    completeness: present ? (unresolvedDeclarations ? "PARTIAL" : "COMPLETE") : "NOT_APPLICABLE",
+    manifests,
+    declared: dependencies.length,
+    mappedImports: [...used.values()].reduce((sum, list) => sum + list.length, 0),
+    unmappedImports: [...missing.values()].reduce((sum, list) => sum + list.length, 0),
+    unresolvedDeclarations,
+    sample: dependencies.slice(0, 20).map(({ file, name, version }) => ({ file, identity: name, version })),
+    reason: !present
+      ? `No ${ecosystem === "maven" ? "pom.xml" : "Gradle build file"} was discovered.`
+      : unresolvedDeclarations
+        ? `${dependencies.length} declarations and all indexed Java imports were checked, but ${unresolvedDeclarations} dynamic/property/catalog declaration(s) could not be resolved statically.`
+        : `${dependencies.length} declarations were compared with every indexed non-JDK Java import using bounded group-prefix and artifact-token evidence. Missing and unused results remain review evidence, not compiler proof.`,
+    findings,
+  };
 }
 
-export function collectJvmDependencyEvidence(repoRoot, { files = listRepoFiles(repoRoot) } = {}) {
+export function collectJvmDependencyEvidence(repoRoot, { files = listRepoFiles(repoRoot), externalImports = [] } = {}) {
   const boundary = createRepoBoundary(repoRoot);
   const mavenFiles = files.filter((file) => /(^|\/)pom\.xml$/i.test(file));
-  const gradleFiles = files.filter((file) => /(^|\/)build\.gradle(?:\.kts)?$/i.test(file));
-  const maven = mavenFiles.flatMap((file) => mavenDeclarations(readRepoText(boundary, file)).map((identity) => ({ file, identity })));
-  const gradle = gradleFiles.flatMap((file) => gradleDeclarations(readRepoText(boundary, file)).map((identity) => ({ file, identity })));
+  const gradleFiles = files.filter((file) => /(^|\/)(?:build|settings|[^/]+)\.gradle(?:\.kts)?$/i.test(file));
+  const catalogFiles = files.filter((file) => /(^|\/)libs\.versions\.toml$/i.test(file));
+  const catalog = new Map();
+  for (const file of catalogFiles) for (const [alias, entry] of parseGradleVersionCatalog(readRepoText(boundary, file))) catalog.set(alias, entry);
+  let mavenUnresolved = 0, gradleUnresolved = 0;
+  const mavenDependencies = mavenFiles.flatMap((file) => {
+    const parsed = parseMavenPom(readRepoText(boundary, file));
+    mavenUnresolved += parsed.unresolvedDeclarations;
+    return parsed.dependencies.map((dependency) => ({ ...dependency, file }));
+  });
+  const gradleDependencies = gradleFiles.flatMap((file) => {
+    const parsed = parseGradleDependencies(readRepoText(boundary, file), catalog);
+    gradleUnresolved += parsed.unresolvedDeclarations || 0;
+    return parsed.map((dependency) => ({ ...dependency, file }));
+  });
+  const javaImports = externalImports.filter((entry) => entry.ecosystem === "Maven" && entry.pkg && !entry.builtin && !entry.unresolved);
+  const allDependencies = [...mavenDependencies, ...gradleDependencies];
   return {
-    maven: {
-      present: mavenFiles.length > 0,
-      status: mavenFiles.length ? "NOT_SUPPORTED" : "NOT_PRESENT",
-      completeness: mavenFiles.length ? "PARTIAL" : "NOT_APPLICABLE",
-      manifests: mavenFiles,
-      declared: maven.length,
-      sample: maven.slice(0, 20),
-      reason: mavenFiles.length
-        ? "Maven manifests and declaration counts were detected, but Java package imports were not mapped to Maven artifacts; unused/missing dependency verdicts are not supported."
-        : "No pom.xml was discovered.",
-    },
-    gradle: {
-      present: gradleFiles.length > 0,
-      status: gradleFiles.length ? "NOT_SUPPORTED" : "NOT_PRESENT",
-      completeness: gradleFiles.length ? "PARTIAL" : "NOT_APPLICABLE",
-      manifests: gradleFiles,
-      declared: gradle.length,
-      sample: gradle.slice(0, 20),
-      reason: gradleFiles.length
-        ? "Gradle manifests and bounded dependency declarations were detected, but version catalogs/build logic and Java package-to-artifact mapping were not resolved; unused/missing dependency verdicts are not supported."
-        : "No build.gradle/build.gradle.kts was discovered.",
-    },
+    maven: analyze("maven", mavenFiles, mavenDependencies, javaImports, mavenUnresolved, allDependencies, true),
+    gradle: analyze("gradle", [...gradleFiles, ...catalogFiles], gradleDependencies, javaImports, gradleUnresolved, allDependencies, mavenFiles.length === 0),
   };
 }