weavatrix 0.2.12 → 0.2.14

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (132) hide show
  1. package/README.md +90 -21
  2. package/SECURITY.md +2 -2
  3. package/docs/releases/v0.2.14.md +93 -0
  4. package/package.json +2 -2
  5. package/skill/SKILL.md +108 -43
  6. package/src/analysis/allowed-test-runner.js +20 -9
  7. package/src/analysis/architecture/contract-graph.js +119 -0
  8. package/src/analysis/architecture/contract-schema.js +110 -0
  9. package/src/analysis/architecture/contract-storage.js +35 -0
  10. package/src/analysis/architecture/contract-verification.js +168 -0
  11. package/src/analysis/architecture-contract.js +16 -343
  12. package/src/analysis/change-classification/diff-parser.js +103 -0
  13. package/src/analysis/change-classification/options.js +40 -0
  14. package/src/analysis/change-classification/symbol-classifier.js +177 -0
  15. package/src/analysis/change-classification.js +120 -519
  16. package/src/analysis/dead-code-review/policy.js +23 -0
  17. package/src/analysis/dead-code-review.js +9 -19
  18. package/src/analysis/dep-check.js +10 -57
  19. package/src/analysis/dep-rules.js +10 -303
  20. package/src/analysis/dependency/scoped-dependencies.js +40 -0
  21. package/src/analysis/endpoints/common.js +62 -0
  22. package/src/analysis/endpoints/extract.js +107 -0
  23. package/src/analysis/endpoints/inventory.js +84 -0
  24. package/src/analysis/endpoints/mounts.js +129 -0
  25. package/src/analysis/endpoints-java.js +80 -3
  26. package/src/analysis/endpoints.js +3 -448
  27. package/src/analysis/git-history/analytics.js +177 -0
  28. package/src/analysis/git-history/collector.js +109 -0
  29. package/src/analysis/git-history/options.js +68 -0
  30. package/src/analysis/git-history.js +128 -577
  31. package/src/analysis/health-capabilities.js +82 -0
  32. package/src/analysis/http-contracts/analysis.js +169 -0
  33. package/src/analysis/http-contracts/client-call-detection.js +81 -0
  34. package/src/analysis/http-contracts/client-call-parser.js +255 -0
  35. package/src/analysis/http-contracts/graph-context.js +143 -0
  36. package/src/analysis/http-contracts/matching.js +61 -0
  37. package/src/analysis/http-contracts/shared.js +86 -0
  38. package/src/analysis/http-contracts.js +6 -822
  39. package/src/analysis/internal-audit/dependency-health.js +111 -0
  40. package/src/analysis/internal-audit/python-manifests.js +65 -0
  41. package/src/analysis/internal-audit/repo-files.js +55 -0
  42. package/src/analysis/internal-audit/supply-chain.js +132 -0
  43. package/src/analysis/internal-audit.collect.js +5 -106
  44. package/src/analysis/internal-audit.run.js +113 -200
  45. package/src/analysis/jvm-dependency-evidence.js +69 -0
  46. package/src/analysis/source-correctness/retry-patterns.js +93 -0
  47. package/src/analysis/source-correctness.js +225 -0
  48. package/src/analysis/structure/dependency-graph.js +156 -0
  49. package/src/analysis/structure/findings.js +142 -0
  50. package/src/graph/builder/go-receiver-resolution.js +112 -0
  51. package/src/graph/builder/js/queries.js +48 -0
  52. package/src/graph/builder/lang-go.js +89 -4
  53. package/src/graph/builder/lang-js.js +4 -44
  54. package/src/graph/builder/pass2-resolution.js +68 -0
  55. package/src/graph/freshness-probe.js +2 -1
  56. package/src/graph/incremental-refresh.js +3 -2
  57. package/src/graph/internal-builder.build.js +22 -183
  58. package/src/graph/internal-builder.pass2.js +161 -0
  59. package/src/graph/internal-builder.resolvers.js +2 -105
  60. package/src/graph/resolvers/rust.js +117 -0
  61. package/src/mcp/actions/advisories.mjs +18 -0
  62. package/src/mcp/actions/graph-lifecycle.mjs +148 -0
  63. package/src/mcp/actions/graph-sync.mjs +195 -0
  64. package/src/mcp/actions/hosted-architecture.mjs +57 -0
  65. package/src/mcp/architecture-bootstrap.mjs +168 -0
  66. package/src/mcp/architecture-starter.mjs +234 -0
  67. package/src/mcp/catalog.mjs +22 -6
  68. package/src/mcp/evidence/bun-lock-graph.mjs +209 -0
  69. package/src/mcp/evidence/package-graph-common.mjs +115 -0
  70. package/src/mcp/evidence/package-lock-graph.mjs +92 -0
  71. package/src/mcp/evidence-snapshot.package-graph.mjs +5 -474
  72. package/src/mcp/graph/context-core.mjs +111 -0
  73. package/src/mcp/graph/context-seeds.mjs +208 -0
  74. package/src/mcp/graph/context-state.mjs +86 -0
  75. package/src/mcp/graph/tools-core.mjs +143 -0
  76. package/src/mcp/graph/tools-query.mjs +223 -0
  77. package/src/mcp/graph-context.mjs +4 -496
  78. package/src/mcp/health/audit-format.mjs +172 -0
  79. package/src/mcp/health/audit.mjs +171 -0
  80. package/src/mcp/health/dead-code.mjs +110 -0
  81. package/src/mcp/health/duplicates.mjs +83 -0
  82. package/src/mcp/health/endpoints.mjs +42 -0
  83. package/src/mcp/health/structure.mjs +219 -0
  84. package/src/mcp/runtime-version.mjs +32 -0
  85. package/src/mcp/server/auto-refresh.mjs +66 -0
  86. package/src/mcp/server/runtime-config.mjs +43 -0
  87. package/src/mcp/server/shutdown.mjs +40 -0
  88. package/src/mcp/sync/evidence-architecture.mjs +54 -0
  89. package/src/mcp/sync/evidence-common.mjs +88 -0
  90. package/src/mcp/sync/evidence-duplicates.mjs +100 -0
  91. package/src/mcp/sync/evidence-health.mjs +56 -0
  92. package/src/mcp/sync/evidence-packages.mjs +95 -0
  93. package/src/mcp/sync/payload-common.mjs +97 -0
  94. package/src/mcp/sync/payload-v2.mjs +53 -0
  95. package/src/mcp/sync/payload-v3.mjs +79 -0
  96. package/src/mcp/sync-evidence.mjs +7 -402
  97. package/src/mcp/sync-payload.mjs +10 -244
  98. package/src/mcp/tools-actions.mjs +18 -414
  99. package/src/mcp/tools-architecture.mjs +18 -70
  100. package/src/mcp/tools-context.mjs +56 -15
  101. package/src/mcp/tools-endpoints.mjs +4 -1
  102. package/src/mcp/tools-graph.mjs +17 -330
  103. package/src/mcp/tools-health.mjs +24 -705
  104. package/src/mcp/tools-verified-change.mjs +12 -4
  105. package/src/mcp-server.mjs +49 -146
  106. package/src/precision/lsp-client/constants.js +12 -0
  107. package/src/precision/lsp-client/environment.js +20 -0
  108. package/src/precision/lsp-client/errors.js +15 -0
  109. package/src/precision/lsp-client/lifecycle.js +127 -0
  110. package/src/precision/lsp-client/message-parser.js +81 -0
  111. package/src/precision/lsp-client/protocol.js +212 -0
  112. package/src/precision/lsp-client/registry.js +58 -0
  113. package/src/precision/lsp-client/repo-uri.js +60 -0
  114. package/src/precision/lsp-client/stdio-client.js +151 -0
  115. package/src/precision/lsp-client.js +10 -682
  116. package/src/precision/lsp-overlay/build.js +238 -0
  117. package/src/precision/lsp-overlay/contract.js +61 -0
  118. package/src/precision/lsp-overlay/reference-results.js +108 -0
  119. package/src/precision/lsp-overlay/semantic-inputs.js +62 -0
  120. package/src/precision/lsp-overlay/source-session.js +134 -0
  121. package/src/precision/lsp-overlay/store.js +150 -0
  122. package/src/precision/lsp-overlay/target-index.js +147 -0
  123. package/src/precision/lsp-overlay/target-query.js +55 -0
  124. package/src/precision/lsp-overlay.js +11 -868
  125. package/src/precision/typescript-lsp-provider.js +12 -682
  126. package/src/precision/typescript-provider/client.js +69 -0
  127. package/src/precision/typescript-provider/discovery.js +124 -0
  128. package/src/precision/typescript-provider/project-host.js +249 -0
  129. package/src/precision/typescript-provider/project-safety.js +161 -0
  130. package/src/precision/typescript-provider/reference-usage.js +53 -0
  131. package/src/version.js +7 -0
  132. package/docs/releases/v0.2.12.md +0 -45
@@ -1,34 +1,39 @@
1
- // internal-audit.run.js — the audit runner: loads a repo's graph.json + package.json, runs
2
- // dead-check (files) + computeUnusedExports + dep-check, and emits the unified findings envelope
3
- // (DEPS_SECURITY_PLAN.md §2.2-2.3). Split from internal-audit.js.
4
1
  import { existsSync } from "node:fs";
5
- import { join, basename } from "node:path";
2
+ import { basename, join } from "node:path";
6
3
  import { computeDead, computeUnusedExports } from "./dead-check.js";
7
- import { computeScopedDepFindings, computeGoDepFindings, computePyDepFindings } from "./dep-check.js";
8
- import { parseGoMod } from "./manifests.js";
4
+ import { computeGoDepFindings, computePyDepFindings, computeScopedDepFindings } from "./dep-check.js";
9
5
  import { computeStructureFindings } from "./dep-rules.js";
10
- import { makeFinding, summarizeFindings, sortFindings } from "./findings.js";
6
+ import { makeFinding, sortFindings, summarizeFindings } from "./findings.js";
11
7
  import { graphOutDirForRepo } from "../graph/layout.js";
12
- import { collectInstalled } from "../security/installed.js";
13
- import { loadStore, queryStore, advisoryQueryFingerprint } from "../security/advisory-store.js";
14
- import { matchAdvisories } from "../security/match.js";
15
- import { scanMalware } from "../security/malware-heuristics.js";
16
- import { classifyTyposquat } from "../security/typosquat.js";
17
8
  import {
18
- readJson, readRepoText, readRepoJson, collectSourceTexts, collectConfigTexts, workspacePkgNames,
19
- collectPackageScopes, collectPyManifest, collectNonRuntimeRoots, TEST_FILE_RE,
9
+ TEST_FILE_RE,
10
+ collectConfigTexts,
11
+ collectNonRuntimeRoots,
12
+ collectPackageScopes,
13
+ collectPyManifest,
14
+ collectSourceTexts,
15
+ listRepoFiles,
16
+ readJson,
17
+ readRepoJson,
18
+ readRepoText,
19
+ workspacePkgNames,
20
20
  } from "./internal-audit.collect.js";
21
- import { entryFiles, computeReachability } from "./internal-audit.reach.js";
22
- import { createRepoBoundary } from "../repo-path.js";
21
+ import { computeReachability, entryFiles } from "./internal-audit.reach.js";
22
+ import { parseGoMod } from "./manifests.js";
23
23
  import { PATH_CLASS_NAMES, createPathClassifier, hasPathClass } from "../path-classification.js";
24
- import { packageReachability } from "./package-reachability.js";
25
-
26
- const LOWER_SEVERITY = { critical: "high", high: "medium", medium: "low", low: "info", info: "info" };
24
+ import { createRepoBoundary } from "../repo-path.js";
25
+ import { analyzeSourceCorrectness } from "./source-correctness.js";
26
+ import { collectJvmDependencyEvidence } from "./jvm-dependency-evidence.js";
27
+ import { buildDependencyHealth } from "./internal-audit/dependency-health.js";
28
+ import { runSupplyChainChecks } from "./internal-audit/supply-chain.js";
27
29
 
28
- // Run the internal audit. graph is optional (loaded from the repo's central graph.json when absent);
29
- // advisoryStorePath overrides the default ~/.weavatrix/advisories.json (tests use a scratch path).
30
- // async because the malware sweep shells out to ripgrep.
31
- export async function runInternalAudit(repoPath, { graph, advisoryStorePath, skipMalwareScan = false, malwareExclusions = {}, rgPath = "" } = {}) {
30
+ export async function runInternalAudit(repoPath, {
31
+ graph,
32
+ advisoryStorePath,
33
+ skipMalwareScan = false,
34
+ malwareExclusions = {},
35
+ rgPath = "",
36
+ } = {}) {
32
37
  if (!existsSync(repoPath)) return { ok: false, error: "Repo path not found" };
33
38
  const boundary = createRepoBoundary(repoPath);
34
39
  if (!boundary.root) return { ok: false, error: "Repository path is unreadable" };
@@ -39,12 +44,12 @@ export async function runInternalAudit(repoPath, { graph, advisoryStorePath, ski
39
44
  const pkg = readRepoJson(boundary, "package.json") || {};
40
45
  const packageScopes = collectPackageScopes(repoPath, pkg);
41
46
  const externalImports = graph.externalImports || [];
42
- const dynamicTargets = new Set(externalImports.filter((e) => e.dynamic && e.target).map((e) => e.target));
47
+ const dynamicTargets = new Set(externalImports.filter((entry) => entry.dynamic && entry.target).map((entry) => entry.target));
43
48
  const rules = readRepoJson(boundary, ".weavatrix-deps.json") || {};
44
-
45
- // Graphs can be stale or miss a helper file; text fallbacks must scan the real repo tree too.
49
+ const repoFiles = listRepoFiles(repoPath);
46
50
  const sources = collectSourceTexts(repoPath, graph);
47
51
  const nonRuntimeRoots = collectNonRuntimeRoots(repoPath, rules);
52
+
48
53
  const pathClassifier = createPathClassifier(repoPath);
49
54
  const pathClassifications = new Map();
50
55
  const classifyPath = (file) => {
@@ -73,68 +78,77 @@ export async function runInternalAudit(repoPath, { graph, advisoryStorePath, ski
73
78
  const unusedExports = computeUnusedExports(graph, sources, { dynamicTargets, entrySet: entries });
74
79
  const reachable = computeReachability(graph, entries);
75
80
  const configTexts = collectConfigTexts(repoPath);
81
+ const npmDependencyImports = externalImports.filter((entry) => entry.ecosystem
82
+ ? entry.ecosystem === "npm"
83
+ : !/\.(?:java|go|py)$/i.test(entry.file || ""));
76
84
  const dep = computeScopedDepFindings({
77
- externalImports, packageScopes, workspacePkgNames: workspacePkgNames(repoPath, pkg), configTexts,
78
- nonRuntimeRoots, sourceFiles: [...sources.keys()],
85
+ externalImports: npmDependencyImports,
86
+ packageScopes,
87
+ workspacePkgNames: workspacePkgNames(repoPath, pkg),
88
+ configTexts,
89
+ nonRuntimeRoots,
90
+ sourceFiles: [...sources.keys()],
79
91
  });
80
- // non-npm ecosystems: Go (go.mod) + Python (requirements/pyproject/Pipfile) — same findings shape
81
92
  const goModText = readRepoText(boundary, "go.mod");
82
93
  const goDep = computeGoDepFindings({ externalImports, goMod: goModText != null ? parseGoMod(goModText) : null, nonRuntimeRoots });
83
- const asList = (v) => Array.isArray(v) ? v : typeof v === "string" ? [v] : [];
84
- const pyRules = rules.python || {};
85
- const depRules = rules.dependencies || {};
94
+ const asList = (value) => Array.isArray(value) ? value : typeof value === "string" ? [value] : [];
95
+ const pyRules = rules.python || {}, depRules = rules.dependencies || {};
86
96
  const managedPython = [...new Set([
87
- ...asList(rules.managedPythonDependencies), ...asList(pyRules.managed), ...asList(pyRules.managedDependencies),
88
- ...asList(depRules.managedPython),
97
+ ...asList(rules.managedPythonDependencies), ...asList(pyRules.managed), ...asList(pyRules.managedDependencies), ...asList(depRules.managedPython),
89
98
  ])];
90
99
  const ignoredPython = [...new Set([
91
- ...asList(rules.ignorePythonDependencies), ...asList(pyRules.ignore), ...asList(pyRules.ignoreDependencies),
92
- ...asList(depRules.ignorePython),
100
+ ...asList(rules.ignorePythonDependencies), ...asList(pyRules.ignore), ...asList(pyRules.ignoreDependencies), ...asList(depRules.ignorePython),
93
101
  ])];
102
+ const pyManifest = collectPyManifest(repoPath);
94
103
  const pyDep = computePyDepFindings({
95
- externalImports, pyManifest: collectPyManifest(repoPath), configTexts,
96
- managedDependencies: managedPython, ignoredDependencies: ignoredPython, nonRuntimeRoots,
104
+ externalImports,
105
+ pyManifest,
106
+ configTexts,
107
+ managedDependencies: managedPython,
108
+ ignoredDependencies: ignoredPython,
109
+ nonRuntimeRoots,
97
110
  });
111
+ const jvmDependencies = collectJvmDependencyEvidence(repoPath, { files: repoFiles });
98
112
 
99
- // structure: cycles / orphans / boundary rules. Rules come from the repo's optional .weavatrix-deps.json
100
- // (the depcruise-config analogue); no bundled default rules — cycles+orphans are always on.
101
- const externalImportFiles = new Set(externalImports.filter((e) => e.pkg && !e.builtin).map((e) => e.file));
113
+ const externalImportFiles = new Set(externalImports.filter((entry) => entry.pkg && !entry.builtin).map((entry) => entry.file));
102
114
  const structure = computeStructureFindings(graph, { rules, entrySet: entries, externalImportFiles });
115
+ const correctness = analyzeSourceCorrectness(sources, { isNonProductPath });
116
+ const findings = [...dep.findings, ...goDep.findings, ...pyDep.findings, ...correctness.findings];
117
+ const deadFileSet = new Set(dead.deadFiles.map((finding) => finding.file));
118
+ for (const finding of structure.findings) {
119
+ if (!(finding.rule === "orphan-file" && deadFileSet.has(finding.file))) findings.push(finding);
120
+ }
103
121
 
104
- const findings = [...dep.findings, ...goDep.findings, ...pyDep.findings];
105
- // orphan ∩ dead-file → one finding: keep the stronger unused-file, drop the duplicate orphan
106
- const deadFileSet = new Set(dead.deadFiles.map((f) => f.file));
107
- for (const f of structure.findings) if (!(f.rule === "orphan-file" && deadFileSet.has(f.file))) findings.push(f);
108
- const actionableDeadFiles = dead.deadFiles.filter((f) => !isNonProductPath(f.file));
109
- for (const f of actionableDeadFiles) {
110
- if (entries.has(f.file) || dynamicTargets.has(f.file) || TEST_FILE_RE.test(f.file)) continue;
122
+ const actionableDeadFiles = dead.deadFiles.filter((finding) => !isNonProductPath(finding.file));
123
+ for (const finding of actionableDeadFiles) {
124
+ if (entries.has(finding.file) || dynamicTargets.has(finding.file) || TEST_FILE_RE.test(finding.file)) continue;
111
125
  findings.push(makeFinding({
112
126
  category: "unused",
113
127
  rule: "unused-file",
114
128
  severity: "low",
115
- confidence: reachable.has(f.file) ? "medium" : "high", // unreachable from every entry = strong corroboration
116
- title: `Unused file: ${f.file}`,
117
- detail: `${f.reason}${reachable.has(f.file) ? "" : "; also unreachable from every entry point"}. Dynamic loading and framework conventions can't be fully ruled out — review before deleting.`,
118
- file: f.file,
119
- graphNodeId: f.file,
129
+ confidence: reachable.has(finding.file) ? "medium" : "high",
130
+ title: `Unused file: ${finding.file}`,
131
+ detail: `${finding.reason}${reachable.has(finding.file) ? "" : "; also unreachable from every entry point"}. Dynamic loading and framework conventions can't be fully ruled out — review before deleting.`,
132
+ file: finding.file,
133
+ graphNodeId: finding.file,
120
134
  source: "internal",
121
135
  fixHint: "review, then delete the file",
122
136
  }));
123
137
  }
124
138
  let unusedExportCount = 0;
125
- for (const s of unusedExports) {
126
- if (s.test || isNonProductPath(s.file)) continue; // convention/generated surfaces are externally consumed or non-product noise
127
- if (/(^|\/)[^/]*\.config\.[a-z0-9]+$|(^|\/)\.[^/]+rc(\.[a-z]+)?$/i.test(s.file)) continue; // config exports are consumed by their tool
139
+ for (const symbol of unusedExports) {
140
+ if (symbol.test || isNonProductPath(symbol.file)) continue;
141
+ if (/(^|\/)[^/]*\.config\.[a-z0-9]+$|(^|\/)\.[^/]+rc(\.[a-z]+)?$/i.test(symbol.file)) continue;
128
142
  findings.push(makeFinding({
129
143
  category: "unused",
130
144
  rule: "unused-export",
131
145
  severity: "info",
132
146
  confidence: "medium",
133
- title: `Unused export: ${s.label.replace(/\(\)$/, "")} — ${s.file}`,
134
- detail: `${s.reason}. Either remove the export keyword (if used only internally) or delete the symbol.`,
135
- file: s.file,
136
- symbol: s.label,
137
- graphNodeId: s.id,
147
+ title: `Unused export: ${symbol.label.replace(/\(\)$/, "")} — ${symbol.file}`,
148
+ detail: `${symbol.reason}. Either remove the export keyword (if used only internally) or delete the symbol.`,
149
+ file: symbol.file,
150
+ symbol: symbol.label,
151
+ graphNodeId: symbol.id,
138
152
  source: "internal",
139
153
  }));
140
154
  unusedExportCount++;
@@ -155,120 +169,34 @@ export async function runInternalAudit(repoPath, { graph, advisoryStorePath, ski
155
169
  }));
156
170
  }
157
171
 
158
- // ---- supply-chain: installed packages × cached OSV advisories. 100% OFFLINE here — the cache is
159
- // refreshed only by the explicit repos:advisory-refresh action. Never blocks the rest of the audit.
160
- let advisoryDbDate = null;
161
- let installedCount = 0;
162
- let inst = { installed: [], drift: [] };
163
- const checks = {
164
- osv: { status: "NOT_CHECKED", detail: "Advisory cache was never refreshed for this repository. Enable the osv profile (or advisories capability), then call refresh_advisories explicitly to opt in to sending pinned package names and versions to OSV.dev." },
165
- malware: { status: skipMalwareScan ? "NOT_CHECKED" : "PENDING", detail: skipMalwareScan ? "Installed-package malware scan is opt-in and was not requested." : "" },
166
- };
167
- try {
168
- inst = collectInstalled(repoPath);
169
- installedCount = inst.installed.length;
170
- const store = advisoryStorePath ? loadStore(advisoryStorePath) : loadStore();
171
- // Only a per-repo stamp proves that this repository's installed versions were queried. A legacy
172
- // global fetched_at may belong to another repo and must never certify this one as clean.
173
- const repoStamp = store.meta?.repos?.[repoPath] || null;
174
- advisoryDbDate = typeof repoStamp === "string" ? repoStamp : repoStamp?.fetched_at || null;
175
- if (advisoryDbDate) {
176
- let status = typeof repoStamp === "object" && ["OK", "PARTIAL", "ERROR"].includes(repoStamp.status) ? repoStamp.status : "PARTIAL";
177
- const fingerprintMatches = typeof repoStamp === "object" && repoStamp.query_fingerprint === advisoryQueryFingerprint(inst.installed);
178
- if (!fingerprintMatches && status === "OK") status = "PARTIAL";
179
- const coverage = typeof repoStamp === "object" && Number.isFinite(repoStamp.queried)
180
- ? ` (${repoStamp.queried_ok ?? repoStamp.queried}/${repoStamp.queried} package versions queried successfully)`
181
- : "";
182
- const drift = fingerprintMatches ? "" : " Dependency versions changed, or this is a legacy stamp without a package fingerprint; enable the osv profile (or advisories capability) and call refresh_advisories for complete coverage.";
183
- checks.osv = {
184
- status,
185
- detail: `${status === "PARTIAL" ? "Partially matched" : "Matched"} installed packages against the cached OSV snapshot from ${advisoryDbDate}${coverage}.${drift}`,
186
- checkedAt: advisoryDbDate,
187
- };
188
- for (const h of matchAdvisories(inst.installed, (eco, name) => queryStore(store, eco, name))) {
189
- const mal = h.adv.kind === "malicious";
190
- const reachability = packageReachability(externalImports, h.pkg.name, { isNonProductPath });
191
- const observedInProduct = reachability.state === "DIRECT_RUNTIME_IMPORT";
192
- const reachabilityDetail = observedInProduct
193
- ? ` Graph reachability: directly imported by product code in ${reachability.directRuntimeImports} callsite(s) across ${reachability.files.length} file(s).`
194
- : ` Graph reachability: ${reachability.state}; ${reachability.note}`;
195
- findings.push(makeFinding({
196
- category: mal ? "malware" : "vulnerability",
197
- rule: mal ? "malicious-package" : "known-vuln",
198
- severity: mal || observedInProduct ? (mal ? "critical" : h.adv.severity) : LOWER_SEVERITY[h.adv.severity] || h.adv.severity,
199
- confidence: mal || observedInProduct ? h.confidence : "low",
200
- title: `${mal ? "Known-malicious package" : `Known vulnerability (${h.adv.id})`}: ${h.pkg.name}@${h.pkg.version}`,
201
- detail: `${h.adv.summary || h.adv.id}${h.adv.fixedIn.length ? ` Fixed in: ${h.adv.fixedIn.join(", ")}.` : mal ? " Remove this package immediately and rotate any secrets it could reach." : ""} (matched by ${h.matchedBy}${h.adv.aliases.length ? `; aliases ${h.adv.aliases.join(", ")}` : ""}).${reachabilityDetail}`,
202
- package: h.pkg.name,
203
- version: h.pkg.version,
204
- reachability,
205
- evidence: [
206
- { file: h.adv.url, line: 0, snippet: `installed via ${h.pkg.source}${h.pkg.dev ? " (dev)" : ""}` },
207
- ...reachability.evidence.slice(0, 5).map((item) => ({file: item.file, line: item.line, snippet: `${item.typeOnly ? "type-only " : ""}${item.kind}`})),
208
- ],
209
- source: "osv",
210
- fixHint: mal ? `npm uninstall ${h.pkg.name} + audit what it touched` : h.adv.fixedIn.length ? `upgrade ${h.pkg.name} to ${h.adv.fixedIn[h.adv.fixedIn.length - 1]}+` : "no fixed version published — consider replacing the package",
211
- }));
212
- }
213
- }
214
- // direct-dependency typosquat (dev-chosen names, small set → low FP): surface quietly even alone.
215
- const directDependencyNames = new Set(packageScopes.flatMap((s) => Object.keys({ ...(s.pkg?.dependencies || {}), ...(s.pkg?.devDependencies || {}) })));
216
- for (const name of directDependencyNames) {
217
- const sq = classifyTyposquat(name);
218
- if (!sq) continue;
219
- findings.push(makeFinding({
220
- category: "malware",
221
- rule: "typosquat",
222
- severity: "medium",
223
- confidence: "low",
224
- title: `Possible typosquat: ${name} (looks like "${sq.nearest}")`,
225
- detail: `Direct dependency "${name}" is edit-distance ${sq.distance} from the popular package "${sq.nearest}". Confirm you meant "${name}" and not "${sq.nearest}" — name-confusion is a common supply-chain lure.`,
226
- package: name,
227
- source: "internal",
228
- fixHint: `verify "${name}" is the intended package (not a typo of "${sq.nearest}")`,
229
- }));
230
- }
231
- for (const d of inst.drift.slice(0, 20)) {
232
- findings.push(makeFinding({
233
- category: "malware",
234
- rule: "lockfile-drift",
235
- severity: "low",
236
- confidence: "medium",
237
- title: `Lockfile drift: ${d.name} (locked ${d.locked}, installed ${d.installed})`,
238
- detail: "The version on disk differs from the lockfile — a stale install, a manual edit, or (worst case) tampering. Reinstall from the lockfile to realign.",
239
- package: d.name,
240
- version: d.installed,
241
- source: "internal",
242
- fixHint: "npm ci (clean install from the lockfile)",
243
- }));
244
- }
245
- } catch (error) {
246
- checks.osv = { status: "ERROR", detail: `Offline advisory matching failed: ${error instanceof Error ? error.message : String(error)}` };
247
- }
248
-
249
- // ---- malware heuristics: install-script beacons / miners / exfil / obfuscation across installed libs.
250
- // Local + offline (ripgrep or a bounded Node fallback). Scans node_modules, Python venvs, Go vendor/cache.
251
- let malwareScan = null;
252
- if (!skipMalwareScan) {
253
- try {
254
- const importedPkgs = new Set(externalImports.filter((e) => e.pkg && !e.builtin).map((e) => e.pkg));
255
- const scan = await scanMalware(repoPath, { installed: inst.installed, importedPkgs, malwareExclusions, rgPath });
256
- findings.push(...scan.findings);
257
- malwareScan = { scanMode: scan.scanMode, packagesScanned: scan.packagesScanned, findings: scan.findings.length, excludedSignals: scan.excludedSignals || 0 };
258
- checks.malware = { status: "OK", detail: `Scanned ${scan.packagesScanned} installed package(s) using ${scan.scanMode}.` };
259
- } catch (error) {
260
- checks.malware = { status: "ERROR", detail: `Installed-package malware scan failed: ${error instanceof Error ? error.message : String(error)}` };
261
- }
262
- }
263
-
172
+ const supplyChain = await runSupplyChainChecks(repoPath, {
173
+ externalImports,
174
+ packageScopes,
175
+ isNonProductPath,
176
+ advisoryStorePath,
177
+ skipMalwareScan,
178
+ malwareExclusions,
179
+ rgPath,
180
+ });
181
+ findings.push(...supplyChain.findings);
264
182
  const sorted = sortFindings(findings);
265
- const dependencyFindings = sorted.filter((finding) => ["unused-dep", "missing-dep", "duplicate-dep"].includes(finding.rule));
266
- const dependencyStatus = (graph.graphBuildMode && graph.graphBuildMode !== "full") || graph.graphBuildScope
267
- ? "PARTIAL"
268
- : "COMPLETE";
269
- const importedPackages = new Set(externalImports
270
- .filter((entry) => entry?.pkg && !entry.builtin && !entry.unresolved)
271
- .map((entry) => `${entry.ecosystem || "npm"}:${entry.pkg}`));
183
+ const dependencyHealth = buildDependencyHealth({
184
+ repoPath,
185
+ graph,
186
+ repoFiles,
187
+ pyManifest,
188
+ dep,
189
+ goDep,
190
+ pyDep,
191
+ jvmDependencies,
192
+ externalImports,
193
+ findings: sorted,
194
+ packageScopes,
195
+ sourceFiles: [...sources.keys()],
196
+ correctnessCoverage: correctness.coverage,
197
+ checks: supplyChain.checks,
198
+ });
199
+
272
200
  return {
273
201
  ok: true,
274
202
  engine: "internal",
@@ -278,14 +206,14 @@ export async function runInternalAudit(repoPath, { graph, advisoryStorePath, ski
278
206
  scanned: {
279
207
  files: dead.stats.files,
280
208
  symbols: dead.stats.symbols,
281
- manifestDeps: dep.declared.size + goDep.declared.size + pyDep.declared.size,
209
+ manifestDeps: dependencyHealth.manifestDeps,
282
210
  externalImports: externalImports.length,
283
211
  nodeModulesPresent: boundary.resolve("node_modules").ok,
284
- installedPackages: installedCount,
285
- advisoryDbDate,
286
- advisoryStatus: checks.osv.status,
287
- malwareScanMode: malwareScan?.scanMode || "skipped",
288
- malwareStatus: checks.malware.status,
212
+ installedPackages: supplyChain.installedCount,
213
+ advisoryDbDate: supplyChain.advisoryDbDate,
214
+ advisoryStatus: supplyChain.checks.osv.status,
215
+ malwareScanMode: supplyChain.malwareScan?.scanMode || "skipped",
216
+ malwareStatus: supplyChain.checks.malware.status,
289
217
  packageScopes: packageScopes.length,
290
218
  managedPythonDependencies: managedPython.length,
291
219
  nonRuntimeRoots,
@@ -298,24 +226,7 @@ export async function runInternalAudit(repoPath, { graph, advisoryStorePath, ski
298
226
  },
299
227
  summary: summarizeFindings(sorted),
300
228
  findings: sorted,
301
- dependencyReport: {
302
- status: dependencyStatus,
303
- evidenceModel: "MANIFEST_PLUS_INDEXED_SOURCE",
304
- perFindingVerification: true,
305
- verificationCoverage: { npm: "COMPLETE_FOR_GRAPH_SCOPE", go: "SUMMARY_ONLY", python: "SUMMARY_ONLY" },
306
- declared: dep.declared.size + goDep.declared.size + pyDep.declared.size,
307
- importedPackages: importedPackages.size,
308
- importRecords: externalImports.length,
309
- unused: dependencyFindings.filter((finding) => finding.rule === "unused-dep").length,
310
- missing: dependencyFindings.filter((finding) => finding.rule === "missing-dep").length,
311
- duplicateDeclarations: dependencyFindings.filter((finding) => finding.rule === "duplicate-dep").length,
312
- unusedRequiringReview: dependencyFindings.filter((finding) => finding.rule === "unused-dep" && finding.verification?.decision === "REVIEW_REQUIRED").length,
313
- missingWithSourceEvidence: dependencyFindings.filter((finding) => finding.rule === "missing-dep" && finding.verification?.indexedSourceImports?.status === "FOUND").length,
314
- packageScopes: packageScopes.length,
315
- reason: dependencyStatus === "COMPLETE"
316
- ? "All discovered dependency manifests were compared with the complete indexed import set; every npm unused/missing/duplicate finding carries manifest and source/config verification state."
317
- : "The dependency result is scoped to a partial graph and is not a repository-wide clean bill.",
318
- },
229
+ dependencyReport: dependencyHealth.dependencyReport,
319
230
  deadReport: {
320
231
  deadSymbols: dead.deadSymbols.filter((symbol) => !isNonProductPath(symbol.file)).length,
321
232
  deadFiles: actionableDeadFiles.length,
@@ -328,7 +239,9 @@ export async function runInternalAudit(repoPath, { graph, advisoryStorePath, ski
328
239
  truncated: conventionEvidence.length > 100,
329
240
  },
330
241
  structureReport: structure.stats,
331
- checks,
332
- malwareScan,
242
+ sourceCorrectnessReport: correctness.coverage,
243
+ healthCapabilities: dependencyHealth.healthCapabilities,
244
+ checks: supplyChain.checks,
245
+ malwareScan: supplyChain.malwareScan,
333
246
  };
334
247
  }
@@ -0,0 +1,69 @@
1
+ // Maven/Gradle manifest presence and bounded declaration counts. We intentionally do not map Java
2
+ // imports to artifacts: package-to-artifact resolution needs a real build model and claiming 0/0 from
3
+ // source regexes would be worse than an explicit NOT_SUPPORTED/PARTIAL state.
4
+ import { createRepoBoundary } from "../repo-path.js";
5
+ import { listRepoFiles, readRepoText } from "./internal-audit.collect.js";
6
+
7
+ function mavenDeclarations(text) {
8
+ const source = String(text || "")
9
+ .replace(/<!--[\s\S]*?-->/g, " ")
10
+ .replace(/<dependencyManagement\b[\s\S]*?<\/dependencyManagement>/gi, " ");
11
+ const identities = [];
12
+ const re = /<dependency\b[^>]*>([\s\S]*?)<\/dependency>/gi;
13
+ let match;
14
+ while ((match = re.exec(source))) {
15
+ const group = /<groupId>\s*([^<]+?)\s*<\/groupId>/i.exec(match[1])?.[1]?.trim() || "";
16
+ const artifact = /<artifactId>\s*([^<]+?)\s*<\/artifactId>/i.exec(match[1])?.[1]?.trim() || "";
17
+ if (artifact) identities.push(group ? `${group}:${artifact}` : artifact);
18
+ }
19
+ return identities;
20
+ }
21
+
22
+ function gradleDeclarations(text) {
23
+ const source = String(text || "")
24
+ .replace(/\/\*[\s\S]*?\*\//g, " ")
25
+ .replace(/(^|\s)\/\/.*$/gm, "$1");
26
+ const declarations = [];
27
+ const configurations = "api|implementation|compileOnly|runtimeOnly|annotationProcessor|kapt|testImplementation|testCompileOnly|testRuntimeOnly|androidTestImplementation";
28
+ const line = new RegExp(`^\\s*(?:${configurations})\\s*(?:\\(\\s*)?([^\\r\\n]+)`, "gmi");
29
+ let match;
30
+ while ((match = line.exec(source))) {
31
+ const expression = match[1].trim().replace(/[),;]+\s*$/, "");
32
+ const coordinate = /["']([^"']+:[^"']+)["']/.exec(expression)?.[1] || "";
33
+ const catalog = /\blibs(?:\.[A-Za-z_]\w*)+/.exec(expression)?.[0] || "";
34
+ declarations.push(coordinate || catalog || "unresolved-declaration");
35
+ }
36
+ return declarations;
37
+ }
38
+
39
+ export function collectJvmDependencyEvidence(repoRoot, { files = listRepoFiles(repoRoot) } = {}) {
40
+ const boundary = createRepoBoundary(repoRoot);
41
+ const mavenFiles = files.filter((file) => /(^|\/)pom\.xml$/i.test(file));
42
+ const gradleFiles = files.filter((file) => /(^|\/)build\.gradle(?:\.kts)?$/i.test(file));
43
+ const maven = mavenFiles.flatMap((file) => mavenDeclarations(readRepoText(boundary, file)).map((identity) => ({ file, identity })));
44
+ const gradle = gradleFiles.flatMap((file) => gradleDeclarations(readRepoText(boundary, file)).map((identity) => ({ file, identity })));
45
+ return {
46
+ maven: {
47
+ present: mavenFiles.length > 0,
48
+ status: mavenFiles.length ? "NOT_SUPPORTED" : "NOT_PRESENT",
49
+ completeness: mavenFiles.length ? "PARTIAL" : "NOT_APPLICABLE",
50
+ manifests: mavenFiles,
51
+ declared: maven.length,
52
+ sample: maven.slice(0, 20),
53
+ reason: mavenFiles.length
54
+ ? "Maven manifests and declaration counts were detected, but Java package imports were not mapped to Maven artifacts; unused/missing dependency verdicts are not supported."
55
+ : "No pom.xml was discovered.",
56
+ },
57
+ gradle: {
58
+ present: gradleFiles.length > 0,
59
+ status: gradleFiles.length ? "NOT_SUPPORTED" : "NOT_PRESENT",
60
+ completeness: gradleFiles.length ? "PARTIAL" : "NOT_APPLICABLE",
61
+ manifests: gradleFiles,
62
+ declared: gradle.length,
63
+ sample: gradle.slice(0, 20),
64
+ reason: gradleFiles.length
65
+ ? "Gradle manifests and bounded dependency declarations were detected, but version catalogs/build logic and Java package-to-artifact mapping were not resolved; unused/missing dependency verdicts are not supported."
66
+ : "No build.gradle/build.gradle.kts was discovered.",
67
+ },
68
+ };
69
+ }
@@ -0,0 +1,93 @@
1
+ import {makeFinding} from '../findings.js'
2
+
3
+ const RETRY_SIGNAL = /\b(?:retry|retries|retrying|reconnect|backoff|attempts?)\b/i
4
+ const WAIT_SIGNAL = /\b(?:sleep|delay)\s*\(/i
5
+ const FAILURE_SIGNAL = /\b(?:catch|isError|error|exception|failed?|healthCheck)\b/i
6
+ const TERMINATION_POLICY = /\b(?:max(?:imum)?(?:Retries|Attempts)|retryLimit|attemptLimit|deadline|timeout|isInterrupted)\b|\bcontext\s*\.\s*Done\b|\bsignal\s*\.\s*aborted\b|\battempts?\s*(?:>=|>)\s*\w+|\bbreak\s*;/i
7
+
8
+ const lineAt = (text, index) => {
9
+ let line = 1
10
+ for (let i = 0; i < index && i < text.length; i++) if (text[i] === '\n') line++
11
+ return line
12
+ }
13
+
14
+ const lineText = (text, index) => {
15
+ const start = text.lastIndexOf('\n', Math.max(0, index - 1)) + 1
16
+ const end = text.indexOf('\n', index)
17
+ return text.slice(start, end < 0 ? text.length : end).trim().slice(0, 300)
18
+ }
19
+
20
+ function balancedEnd(text, openAt) {
21
+ if (text[openAt] !== '{') return -1
22
+ let depth = 0
23
+ for (let i = openAt; i < text.length; i++) {
24
+ if (text[i] === '{') depth++
25
+ else if (text[i] === '}' && --depth === 0) return i + 1
26
+ }
27
+ return -1
28
+ }
29
+
30
+ function retryFinding(text, file, index) {
31
+ return makeFinding({
32
+ category: 'structure',
33
+ rule: 'unbounded-retry-loop',
34
+ severity: 'low',
35
+ confidence: 'medium',
36
+ title: 'Retry/poll loop has no visible attempt, deadline, or cancellation bound',
37
+ detail: 'A repeating loop contains retry/failure plus wait behavior but no local maximum-attempt, deadline, cancellation, interrupt, or explicit break policy was recognized. This is a review signal, not proof of an infinite loop; success or a called helper may terminate it.',
38
+ file,
39
+ line: lineAt(text, index),
40
+ evidence: [{file, line: lineAt(text, index), snippet: lineText(text, index)}],
41
+ fixHint: 'confirm and document the retry termination/cancellation policy',
42
+ })
43
+ }
44
+
45
+ function retryBehavior(source) {
46
+ return RETRY_SIGNAL.test(source) || (WAIT_SIGNAL.test(source) && FAILURE_SIGNAL.test(source))
47
+ }
48
+
49
+ function bracedRetryFindings(text, masked, file) {
50
+ const findings = []
51
+ const re = /\bwhile\s*\(([^)]*)\)\s*\{|\bfor\s*\(\s*;\s*;\s*\)\s*\{|\bfor\s*\{|\bdo\s*\{/g
52
+ let match
53
+ while ((match = re.exec(masked))) {
54
+ const open = re.lastIndex - 1
55
+ const end = balancedEnd(masked, open)
56
+ if (end < 0) continue
57
+ const body = masked.slice(open + 1, end - 1)
58
+ const context = masked.slice(Math.max(0, match.index - 250), match.index)
59
+ let condition = match[1] || '', tailLength = 0
60
+ if (/^do\b/.test(match[0])) {
61
+ const tail = /^\s*while\s*\(([^)]*)\)\s*;/.exec(masked.slice(end))
62
+ condition = tail?.[1] || ''
63
+ tailLength = tail?.[0]?.length || 0
64
+ }
65
+ const evidence = `${context}\n${condition}\n${body}`
66
+ if (retryBehavior(evidence) && !TERMINATION_POLICY.test(`${condition}\n${body}`)) {
67
+ findings.push(retryFinding(text, file, match.index))
68
+ }
69
+ re.lastIndex = end + tailLength
70
+ }
71
+ return findings
72
+ }
73
+
74
+ function pythonRetryFindings(text, masked, file) {
75
+ const findings = [], lines = masked.split(/\r?\n/)
76
+ for (let i = 0; i < lines.length; i++) {
77
+ const match = /^(\s*)while\s+True\s*:/.exec(lines[i])
78
+ if (!match) continue
79
+ const indent = match[1].length
80
+ let end = i + 1
81
+ while (end < lines.length && (!lines[end].trim() || /^\s*/.exec(lines[end])[0].length > indent)) end++
82
+ const body = lines.slice(i + 1, end).join('\n')
83
+ const context = lines.slice(Math.max(0, i - 8), i).join('\n')
84
+ if (retryBehavior(`${context}\n${body}`) && !TERMINATION_POLICY.test(body)) {
85
+ findings.push(retryFinding(text, file, text.split(/\r?\n/).slice(0, i).join('\n').length + (i ? 1 : 0)))
86
+ }
87
+ }
88
+ return findings
89
+ }
90
+
91
+ export function retryFindings(text, masked, file, {python = false} = {}) {
92
+ return python ? pythonRetryFindings(text, masked, file) : bracedRetryFindings(text, masked, file)
93
+ }