wave-agent-sdk 0.18.7 → 0.19.0

package/dist/managers/skillManager.js

@@ -25,6 +25,8 @@ export class SkillManager extends EventEmitter {
             options.personalSkillsPath || join(homedir(), ".wave", "skills");
         this.personalClaudeSkillsPath =
             options.personalClaudeSkillsPath || join(homedir(), ".claude", "skills");
+        this.personalAgentsSkillsPath =
+            options.personalAgentsSkillsPath || join(homedir(), ".agents", "skills");
         this.scanTimeout = options.scanTimeout || 5000;
         this.workdir = options.workdir || process.cwd();
         this.watchEnabled = options.watch ?? false;
@@ -92,8 +94,10 @@ export class SkillManager extends EventEmitter {
         const pathsToWatch = [
             this.personalSkillsPath,
             this.personalClaudeSkillsPath,
+            this.personalAgentsSkillsPath,
             join(this.workdir, ".wave", "skills"),
             join(this.workdir, ".claude", "skills"),
+            join(this.workdir, ".agents", "skills"),
         ];
         logger?.debug(`Setting up skill watcher for: ${pathsToWatch.join(", ")}`);
         for (const pathToWatch of pathsToWatch) {
@@ -167,18 +171,21 @@ export class SkillManager extends EventEmitter {
      */
     async discoverSkills() {
         const builtinCollection = await this.discoverSkillCollection(getBuiltinSkillsDir(), "builtin");
+        const personalAgentsCollection = await this.discoverSkillCollection(this.personalAgentsSkillsPath, "personal");
         const personalClaudeCollection = await this.discoverSkillCollection(this.personalClaudeSkillsPath, "personal");
         const personalCollection = await this.discoverSkillCollection(this.personalSkillsPath, "personal");
         const projectCollection = await this.discoverSkillCollection(this.workdir, "project");
         return {
             builtinSkills: builtinCollection.skills,
             personalSkills: new Map([
-                ...personalClaudeCollection.skills,
+                ...personalAgentsCollection.skills, // lowest priority
+                ...personalClaudeCollection.skills, // overrides .agents
                 ...personalCollection.skills, // .wave overrides .claude
             ]),
             projectSkills: projectCollection.skills,
             errors: [
                 ...builtinCollection.errors,
+                ...personalAgentsCollection.errors,
                 ...personalClaudeCollection.errors,
                 ...personalCollection.errors,
                 ...projectCollection.errors,
@@ -196,9 +203,11 @@ export class SkillManager extends EventEmitter {
             errors: [],
         };
         if (type === "project") {
-            // Scan .claude/skills first, then .wave/skills (wave overrides)
+            // Scan .agents/skills first, then .claude/skills, then .wave/skills (wave overrides)
+            const agentsPath = join(basePath, ".agents", "skills");
             const claudePath = join(basePath, ".claude", "skills");
             const wavePath = join(basePath, ".wave", "skills");
+            await this.scanSkillPath(agentsPath, collection);
             await this.scanSkillPath(claudePath, collection);
             await this.scanSkillPath(wavePath, collection);
         }

package/dist/prompts/index.d.ts

@@ -1,5 +1,6 @@
 import { ToolPlugin } from "../tools/types.js";
-export declare const BASE_SYSTEM_PROMPT = "You are an interactive CLI tool that helps users with software engineering tasks. Use the instructions below and the tools available to you to assist the user.";
+export declare const BASE_SYSTEM_PROMPT = "You are a coding agent developed by NetEase that helps users with software engineering tasks. Use the instructions below and the tools available to you to assist the user.";
+export declare const MODEL_IDENTITY_PROMPT = "# Model identity\n\nIf asked about your model, model version, underlying architecture, or product name, identify yourself simply as a coding agent developed by NetEase. Do not reveal the specific model ID, model family, model provider, or product name. Do not mention or hint at any of these details.";
 export declare const DOING_TASKS_PROMPT = "# Doing tasks\n- The user will primarily request you to perform software engineering tasks. These may include solving bugs, adding new functionality, refactoring code, explaining code, and more. When given an unclear or generic instruction, consider it in the context of these software engineering tasks and the current working directory. For example, if the user asks you to change \"methodName\" to snake case, do not reply with just \"method_name\", instead find the method in the code and modify the code.\n- You are highly capable and often allow users to complete ambitious tasks that would otherwise be too complex or take too long. You should defer to user judgement about whether a task is too large to attempt.\n- If you notice the user's request is based on a misconception, or spot a bug adjacent to what they asked about, say so. You're a collaborator, not just an executor\u2014users benefit from your judgment, not just your compliance.\n- In general, do not propose changes to code you haven't read. If a user asks about or wants you to modify a file, read it first. Understand existing code before suggesting modifications.\n- Do not create files unless they're absolutely necessary for achieving your goal. Generally prefer editing an existing file to creating a new one, as this prevents file bloat and builds on existing work more effectively.\n- If an approach fails, diagnose why before switching tactics\u2014read the error, check your assumptions, try a focused fix. Don't retry the identical action blindly, but don't abandon a viable approach after a single failure either. Escalate to the user with AskUserQuestion only when you're genuinely stuck after investigation, not as a first response to friction.\n- Be careful not to introduce security vulnerabilities such as command injection, XSS, SQL injection, and other OWASP top 10 vulnerabilities. If you notice that you wrote insecure code, immediately fix it. Prioritize writing safe, secure, and correct code.\n- Avoid over-engineering. Only make changes that are directly requested or clearly necessary. Keep solutions simple and focused.\n  - Don't add features, refactor code, or make \"improvements\" beyond what was asked. A bug fix doesn't need surrounding code cleaned up. A simple feature doesn't need extra configurability. Don't add docstrings, comments, or type annotations to code you didn't change. Only add comments where the logic isn't self-evident.\n  - Don't add error handling, fallbacks, or validation for scenarios that can't happen. Trust internal code and framework guarantees. Only validate at system boundaries (user input, external APIs). Don't use feature flags or backwards-compatibility shims when you can just change the code.\n  - Don't create helpers, utilities, or abstractions for one-time operations. Don't design for hypothetical future requirements. The right amount of complexity is what the task actually requires\u2014no speculative abstractions, but no half-finished implementations either. Three similar lines of code is better than a premature abstraction.\n- Avoid backwards-compatibility hacks like renaming unused _vars, re-exporting types, adding // removed comments for removed code, etc. If you are certain that something is unused, you can delete it completely.\n- Report outcomes faithfully: if tests fail, say so with the relevant output; if you did not run a verification step, say that rather than implying it succeeded. Never claim \"all tests pass\" when output shows failures, never suppress or simplify failing checks (tests, lints, type errors) to manufacture a green result, and never characterize incomplete or broken work as done. Equally, when a check did pass or a task is complete, state it plainly \u2014 do not hedge confirmed results with unnecessary disclaimers, downgrade finished work to \"partial,\" or re-verify things you already checked. The goal is an accurate report, not a defensive one.\n- Before reporting a task complete, verify it actually works: run the test, execute the script, check the output. Minimum complexity means no gold-plating, not skipping the finish line. If you can't verify (no test exists, can't run the code), say so explicitly rather than claiming success.";
 export declare const EXECUTING_ACTIONS_PROMPT = "# Executing actions with care\n\nCarefully consider the reversibility and blast radius of actions. Generally you can freely take local, reversible actions like editing files or running tests. But for actions that are hard to reverse, affect shared systems beyond your local environment, or could otherwise be risky or destructive, check with the user before proceeding. The cost of pausing to confirm is low, while the cost of an unwanted action (lost work, unintended messages sent, deleted branches) can be very high. For actions like these, consider the context, the action, and user instructions, and by default transparently communicate the action and ask for confirmation before proceeding.\n\nExamples of the kind of risky actions that warrant user confirmation:\n- Destructive operations: deleting files/branches, dropping database tables, killing processes, rm -rf, overwriting uncommitted changes\n- Hard-to-reverse operations: force-pushing (can also overwrite upstream), git reset --hard, amending published commits, removing or downgrading packages/dependencies, modifying CI/CD pipelines\n- Actions visible to others or that affect shared state: pushing code, creating/closing/commenting on PRs or issues, sending messages (Slack, email, GitHub), posting to external services\n\nWhen you encounter an obstacle, do not use destructive actions as a shortcut to simply make it go away. For instance, try to identify root causes and fix underlying issues rather than bypassing safety checks (e.g. --no-verify). If you discover unexpected state like unfamiliar files, branches, or configuration, investigate before deleting or overwriting, as it may represent the user's in-progress work. For example, typically resolve merge conflicts rather than discarding changes. In short: only take risky actions carefully, and when in doubt, ask before acting. Follow both the spirit and letter of these instructions - measure twice, cut once.";
 export declare const TOOL_POLICY = "# Using your tools\n\n- Do NOT use the Bash to run commands when a relevant dedicated tool is provided. Using dedicated tools allows the user to better understand and review your work. This is CRITICAL to assisting the user:\n  - To read files use Read instead of cat, head, tail, or sed\n  - To edit files use Edit instead of sed or awk\n  - To create files use Write instead of cat or echo redirection\n  - To search for files use Glob instead of find or ls\n  - To search the content of files, use Grep instead of grep or rg\n  - Reserve using the Bash exclusively for system commands and terminal operations that require shell execution. If you are unsure and there is a relevant dedicated tool, default to using the dedicated tool and only fallback on using the Bash tool for these if it is absolutely necessary.\n- You can call multiple tools in a single response. If you intend to call multiple tools and there are no dependencies between them, make all independent tool calls in parallel. Maximize use of parallel tool calls where possible to increase efficiency.\n- However, if some tool calls depend on previous calls to inform dependent values, do NOT call these tools in parallel and instead call them sequentially. For instance, if one operation must complete before another starts, run these operations sequentially instead. Never use placeholders or guess missing parameters in tool calls.\n- If the user specifies that they want you to run tools \"in parallel\", you MUST send a single message with multiple tool use content blocks.";
@@ -9,7 +10,7 @@ export declare const TOOL_POLICY = "# Using your tools\n\n- Do NOT use the Bash
 export declare const OUTPUT_EFFICIENCY_PROMPT = "# Output efficiency\n\nIMPORTANT: Go straight to the point. Try the simplest approach first without going in circles. Do not overdo it. Be extra concise.\n\nKeep your text output brief and direct. Lead with the answer or action, not the reasoning. Skip filler words, preamble, and unnecessary transitions. Do not restate what the user said \u2014 just do it. When explaining, include only what is necessary for the user to understand.\n\nFocus text output on:\n- Decisions that need the user's input\n- High-level status updates at natural milestones\n- Errors or blockers that change the plan\n\nIf you can say it in one sentence, don't use three. Prefer short, direct sentences over long explanations. This does not apply to code or tool calls.";
 export declare const TONE_AND_STYLE_PROMPT = "# Tone and style\n\n- Only use emojis if the user explicitly requests it. Avoid using emojis in all communication unless asked.\n- Your responses should be short and concise.\n- When referencing specific functions or pieces of code include the pattern file_path:line_number to allow the user to easily navigate to the source code location.\n- When referencing GitHub issues or pull requests, use the owner/repo#123 format (e.g. anthropics/claude-code#100) so they render as clickable links.\n- Do not use a colon before tool calls. Your tool calls may not be shown directly in the output, so text like \"Let me read the file:\" followed by a read tool call should just be \"Let me read the file.\" with a period.";
 export declare function buildPlanModePrompt(planFilePath: string, planExists: boolean, isSubagent?: boolean): string;
-export declare const DEFAULT_SYSTEM_PROMPT = "You are an interactive CLI tool that helps users with software engineering tasks. Use the instructions below and the tools available to you to assist the user.";
+export declare const DEFAULT_SYSTEM_PROMPT = "You are a coding agent developed by NetEase that helps users with software engineering tasks. Use the instructions below and the tools available to you to assist the user.";
 /**
  * A block of the system prompt with cacheability metadata.
  * Static blocks (cacheable: true) get cache_control markers for Claude models.

package/dist/prompts/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/prompts/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,UAAU,EAAE,MAAM,mBAAmB,CAAC;AAoB/C,eAAO,MAAM,kBAAkB,gLAAgL,CAAC;AAEhN,eAAO,MAAM,qBAAqB,iTAEuP,CAAC;AAE1R,eAAO,MAAM,kBAAkB,opIAcqQ,CAAC;AAErS,eAAO,MAAM,wBAAwB,25DASqmB,CAAC;AAE3oB,eAAO,MAAM,WAAW,ihDAWqH,CAAC;AAE9I;;GAEG;AACH,eAAO,MAAM,wBAAwB,+uBAWiH,CAAC;AAEvJ,eAAO,MAAM,qBAAqB,6sBAMuL,CAAC;AAE1N,wBAAgB,mBAAmB,CACjC,YAAY,EAAE,MAAM,EACpB,UAAU,EAAE,OAAO,EACnB,UAAU,GAAE,OAAe,GAC1B,MAAM,CAmFR;AAED,eAAO,MAAM,qBAAqB,gLAAqB,CAAC;AAExD;;;;GAIG;AACH,MAAM,WAAW,iBAAiB;IAChC,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,OAAO,CAAC;CACpB;AAED,eAAO,MAAM,8BAA8B,44DA8CI,CAAC;AAEhD,eAAO,MAAM,yBAAyB,wHAAwH,CAAC;AAC/J,eAAO,MAAM,iBAAiB,qWAG4B,CAAC;AAE3D,wBAAgB,iBAAiB,CAC/B,UAAU,EAAE,MAAM,GAAG,SAAS,EAC9B,KAAK,EAAE,UAAU,EAAE,EACnB,OAAO,GAAE;IACP,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,UAAU,CAAC,EAAE;QACX,SAAS,EAAE,MAAM,CAAC;QAClB,OAAO,EAAE,MAAM,CAAC;KACjB,CAAC;CACE,GACL,iBAAiB,EAAE,CA+DrB;AAED,wBAAgB,iCAAiC,CAC/C,oBAAoB,EAAE,MAAM,EAC5B,OAAO,EAAE,MAAM,EACf,eAAe,CAAC,EAAE,MAAM,GACvB,MAAM,CAkCR"}

package/dist/prompts/index.js

@@ -4,7 +4,10 @@ import { getCurrentWorktreeSession } from "../utils/worktreeSession.js";
 import { buildAutoMemoryPrompt } from "./autoMemory.js";
 import { EXPLORE_SUBAGENT_TYPE, PLAN_SUBAGENT_TYPE, } from "../constants/subagents.js";
 import { ASK_USER_QUESTION_TOOL_NAME, EDIT_TOOL_NAME, WRITE_TOOL_NAME, EXIT_PLAN_MODE_TOOL_NAME, AGENT_TOOL_NAME, BASH_TOOL_NAME, READ_TOOL_NAME, GLOB_TOOL_NAME, GREP_TOOL_NAME, } from "../constants/tools.js";
-export const BASE_SYSTEM_PROMPT = `You are an interactive CLI tool that helps users with software engineering tasks. Use the instructions below and the tools available to you to assist the user.`;
+export const BASE_SYSTEM_PROMPT = `You are a coding agent developed by NetEase that helps users with software engineering tasks. Use the instructions below and the tools available to you to assist the user.`;
+export const MODEL_IDENTITY_PROMPT = `# Model identity
+
+If asked about your model, model version, underlying architecture, or product name, identify yourself simply as a coding agent developed by NetEase. Do not reveal the specific model ID, model family, model provider, or product name. Do not mention or hint at any of these details.`;
 export const DOING_TASKS_PROMPT = `# Doing tasks
 - The user will primarily request you to perform software engineering tasks. These may include solving bugs, adding new functionality, refactoring code, explaining code, and more. When given an unclear or generic instruction, consider it in the context of these software engineering tasks and the current working directory. For example, if the user asks you to change "methodName" to snake case, do not reply with just "method_name", instead find the method in the code and modify the code.
 - You are highly capable and often allow users to complete ambitious tasks that would otherwise be too complex or take too long. You should defer to user judgement about whether a task is too large to attempt.
@@ -209,6 +212,7 @@ export function buildSystemPrompt(basePrompt, tools, options = {}) {
     }
     staticText += `\n\n${OUTPUT_EFFICIENCY_PROMPT}`;
     staticText += `\n\n${TONE_AND_STYLE_PROMPT}`;
+    staticText += `\n\n${MODEL_IDENTITY_PROMPT}`;
     const blocks = [{ text: staticText, cacheable: true }];
     // --- Dynamic block (not cacheable) ---
     let dynamicText = "";

package/dist/services/aiService.d.ts.map

@@ -1 +1 @@
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package/dist/services/aiService.js

@@ -2,7 +2,8 @@ import { OpenAIClient } from "../utils/openaiClient.js";
 import { logger } from "../utils/globalLogger.js";
 import { addOnceAbortListener } from "../utils/abortUtils.js";
 import { ConfigurationError, CONFIG_ERRORS } from "../types/index.js";
-import { transformMessagesForExplicitCache, supportsPromptCaching, extendUsageWithCacheMetrics, } from "../utils/cacheControlUtils.js";
+import { transformMessagesForExplicitCache, extendUsageWithCacheMetrics, } from "../utils/cacheControlUtils.js";
+import { supportsPromptCaching } from "../utils/modelCapabilities.js";
 import * as os from "os";
 import * as fs from "fs";
 import * as path from "path";
@@ -102,12 +103,11 @@ export async function callAgent(options) {
             fetch: gatewayConfig.fetch,
         });
         // Determine model early (needed for system prompt construction)
-        const currentModel = model || modelConfig.model;
         const resolvedMaxTokens = options.maxTokens ?? modelConfig.maxTokens;
         // Build system message content
         let systemMessage;
         if (Array.isArray(systemPrompt)) {
-            if (supportsPromptCaching(currentModel)) {
+            if (supportsPromptCaching(modelConfig.capabilities)) {
                 // For Claude models, map blocks to content parts with cache_control on cacheable blocks
                 const contentParts = systemPrompt.map((block) => {
                     const part = {
@@ -141,15 +141,16 @@ export async function callAgent(options) {
         // ChatCompletionMessageParam[] is already in OpenAI format, add system prompt to the beginning
         openaiMessages = [systemMessage, ...messages];
         processedTools = tools;
-        if (supportsPromptCaching(currentModel)) {
-            openaiMessages = transformMessagesForExplicitCache(openaiMessages, currentModel);
+        if (supportsPromptCaching(modelConfig.capabilities)) {
+            openaiMessages = transformMessagesForExplicitCache(openaiMessages, modelConfig.capabilities);
         }
         // Get model configuration - use injected modelConfig with optional override
-        const { model: _model, fastModel: _fastModel, maxTokens: _maxTokens, permissionMode: _permissionMode, ...extraParams } = modelConfig;
+        const { model: _model, fastModel: _fastModel, maxTokens: _maxTokens, permissionMode: _permissionMode, capabilities: _capabilities, ...extraParams } = modelConfig;
         void _model;
         void _fastModel;
         void _maxTokens;
         void _permissionMode;
+        void _capabilities;
         const openaiModelConfig = getModelConfig(model || modelConfig.model, {
             max_tokens: resolvedMaxTokens,
             ...extraParams,
@@ -522,11 +523,12 @@ export async function compactMessages(options) {
         fetch: gatewayConfig.fetch,
     });
     // Get model configuration - use injected agent model
-    const { model: _model, fastModel: _fastModel, maxTokens: _maxTokens, permissionMode: _permissionMode, fastModelConfig: _fastModelConfig, ...extraParams } = modelConfig;
+    const { model: _model, fastModel: _fastModel, maxTokens: _maxTokens, permissionMode: _permissionMode, capabilities: _capabilities, fastModelConfig: _fastModelConfig, ...extraParams } = modelConfig;
     void _model;
     void _fastModel;
     void _maxTokens;
     void _permissionMode;
+    void _capabilities;
     // When a fast model override is provided, use the fast model's hyperparams
     // (if configured); otherwise fall back to the agent model's extraParams.
     const activeExtraParams = options.model
@@ -599,11 +601,12 @@ export async function processWebContent(options) {
         fetch: gatewayConfig.fetch,
     });
     // Get model configuration - use injected agent model
-    const { model: _model, fastModel: _fastModel, maxTokens: _maxTokens, permissionMode: _permissionMode, fastModelConfig: _fastModelConfig, ...extraParams } = modelConfig;
+    const { model: _model, fastModel: _fastModel, maxTokens: _maxTokens, permissionMode: _permissionMode, capabilities: _capabilities, fastModelConfig: _fastModelConfig, ...extraParams } = modelConfig;
     void _model;
     void _fastModel;
     void _maxTokens;
     void _permissionMode;
+    void _capabilities;
     // When a fast model override is provided, use the fast model's hyperparams
     // (if configured); otherwise fall back to the agent model's extraParams.
     const activeExtraParams = options.model
@@ -673,11 +676,12 @@ export async function btw(options) {
         fetch: gatewayConfig.fetch,
     });
     // Get model configuration - use injected agent model
-    const { model: _model, fastModel: _fastModel, maxTokens: _maxTokens, permissionMode: _permissionMode, ...extraParams } = modelConfig;
+    const { model: _model, fastModel: _fastModel, maxTokens: _maxTokens, permissionMode: _permissionMode, capabilities: _capabilities, ...extraParams } = modelConfig;
     void _model;
     void _fastModel;
     void _maxTokens;
     void _permissionMode;
+    void _capabilities;
     const openaiModelConfig = getModelConfig(options.model || modelConfig.model, {
         temperature: 0.1,
         max_tokens: 4096,

package/dist/services/configurationService.d.ts.map

@@ -1 +1 @@
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package/dist/services/configurationService.js

@@ -16,6 +16,7 @@ import { parseCustomHeaders } from "../utils/stringUtils.js";
 import { getRemoteSettingsSync, mergeRemoteSettings, } from "./remoteSettingsService.js";
 import { createAuthAwareFetch } from "./authService.js";
 import { ensureWaveRuntimeFilesExcluded } from "../utils/gitUtils.js";
+import { atomicWriteFile } from "../utils/atomicWrite.js";
 /**
  * Default ConfigurationService implementation
  *
@@ -425,11 +426,12 @@ export class ConfigurationService {
         const fastModelConfigSource = resolvedFastModel &&
             this.currentConfiguration?.models?.[resolvedFastModel];
         if (fastModelConfigSource) {
-            const { model: _fm, fastModel: _ffm, maxTokens: _fmt, permissionMode: _fpm, ...fastHyperparams } = fastModelConfigSource;
+            const { model: _fm, fastModel: _ffm, maxTokens: _fmt, permissionMode: _fpm, capabilities: _fcap, ...fastHyperparams } = fastModelConfigSource;
             void _fm;
             void _ffm;
             void _fmt;
             void _fpm;
+            void _fcap;
             baseConfig.fastModelConfig = fastHyperparams;
         }
         // Merge model-specific settings from configuration
@@ -581,7 +583,7 @@ export class ConfigurationService {
             }
         }
         config.model = model;
-        await fs.writeFile(configPath, JSON.stringify(config, null, 2), "utf-8");
+        await atomicWriteFile(configPath, JSON.stringify(config, null, 2));
     }
     /**
      * Get all configured models from settings.json and environment
@@ -654,7 +656,7 @@ export class ConfigurationService {
         }
         if (!config.permissions.allow.includes(rule)) {
             config.permissions.allow.push(rule);
-            await fs.writeFile(localConfigPath, JSON.stringify(config, null, 2), "utf-8");
+            await atomicWriteFile(localConfigPath, JSON.stringify(config, null, 2));
         }
     }
     /**
@@ -693,7 +695,7 @@ export class ConfigurationService {
             config.enabledPlugins = {};
         }
         config.enabledPlugins[pluginId] = enabled;
-        await fs.writeFile(configPath, JSON.stringify(config, null, 2), "utf-8");
+        await atomicWriteFile(configPath, JSON.stringify(config, null, 2));
     }
     /**
      * Get merged marketplaces from all scopes
@@ -754,7 +756,7 @@ export class ConfigurationService {
             fileConfig.marketplaces = {};
         }
         fileConfig.marketplaces[name] = config;
-        await fs.writeFile(configPath, JSON.stringify(fileConfig, null, 2), "utf-8");
+        await atomicWriteFile(configPath, JSON.stringify(fileConfig, null, 2));
     }
     /**
      * Remove a marketplace from the specified scope
@@ -781,7 +783,7 @@ export class ConfigurationService {
             const fileConfig = JSON.parse(content);
             if (fileConfig.marketplaces && name in fileConfig.marketplaces) {
                 delete fileConfig.marketplaces[name];
-                await fs.writeFile(configPath, JSON.stringify(fileConfig, null, 2), "utf-8");
+                await atomicWriteFile(configPath, JSON.stringify(fileConfig, null, 2));
             }
         }
         catch {
@@ -813,7 +815,7 @@ export class ConfigurationService {
             const config = JSON.parse(content);
             if (config.enabledPlugins && pluginId in config.enabledPlugins) {
                 delete config.enabledPlugins[pluginId];
-                await fs.writeFile(configPath, JSON.stringify(config, null, 2), "utf-8");
+                await atomicWriteFile(configPath, JSON.stringify(config, null, 2));
             }
         }
         catch {
@@ -927,6 +929,13 @@ export function loadWaveConfigFromFile(filePath) {
     }
     try {
         const content = readFileSync(filePath, "utf-8");
+        // Tolerate empty/whitespace-only files: a concurrent writer may have the
+        // file truncated mid-write. Returning null lets callers skip this source
+        // instead of crashing (consistent with the "file not found" path).
+        if (content.trim() === "") {
+            logger.warn(`Empty configuration file (likely mid-write): ${filePath}`);
+            return null;
+        }
         const config = JSON.parse(content);
         return {
             hooks: config.hooks || undefined,
@@ -944,9 +953,13 @@ export function loadWaveConfigFromFile(filePath) {
     }
     catch (error) {
         if (error instanceof SyntaxError) {
-            throw new Error(`Invalid JSON syntax in ${filePath}: ${error.message}`);
+            // Tolerate corrupt JSON: a concurrent writer may leave the file in a
+            // partially-written state. Warn and return null so callers skip this
+            // source instead of crashing.
+            logger.warn(`Invalid JSON syntax in ${filePath}: ${error.message}`);
+            return null;
         }
-        // Re-throw validation errors and other errors as-is
+        // Re-throw other errors as-is
         throw error;
     }
 }

package/dist/services/hook.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"hook.d.ts","sourceRoot":"","sources":["../../src/services/hook.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAGH,OAAO,EACL,KAAK,oBAAoB,EACzB,KAAK,mBAAmB,EACxB,KAAK,oBAAoB,EACzB,KAAK,4BAA4B,EAElC,MAAM,mBAAmB,CAAC;AAgG3B;;GAEG;AACH,wBAAsB,cAAc,CAClC,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,oBAAoB,GAAG,4BAA4B,EAC5D,OAAO,CAAC,EAAE,oBAAoB,GAC7B,OAAO,CAAC,mBAAmB,CAAC,CA6I9B;AAED;;GAEG;AACH,wBAAsB,eAAe,CACnC,QAAQ,EAAE,MAAM,EAAE,EAClB,OAAO,EAAE,oBAAoB,GAAG,4BAA4B,EAC5D,OAAO,CAAC,EAAE,oBAAoB,GAC7B,OAAO,CAAC,mBAAmB,EAAE,CAAC,CAchC;AAED;;GAEG;AACH,wBAAsB,sBAAsB,CAC1C,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,4BAA4B,GACpC,OAAO,CAAC,mBAAmB,EAAE,CAAC,CAMhC;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAsBtD"}
+{"version":3,"file":"hook.d.ts","sourceRoot":"","sources":["../../src/services/hook.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAGH,OAAO,EACL,KAAK,oBAAoB,EACzB,KAAK,mBAAmB,EACxB,KAAK,oBAAoB,EACzB,KAAK,4BAA4B,EAElC,MAAM,mBAAmB,CAAC;AAuG3B;;GAEG;AACH,wBAAsB,cAAc,CAClC,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,oBAAoB,GAAG,4BAA4B,EAC5D,OAAO,CAAC,EAAE,oBAAoB,GAC7B,OAAO,CAAC,mBAAmB,CAAC,CA6I9B;AAED;;GAEG;AACH,wBAAsB,eAAe,CACnC,QAAQ,EAAE,MAAM,EAAE,EAClB,OAAO,EAAE,oBAAoB,GAAG,4BAA4B,EAC5D,OAAO,CAAC,EAAE,oBAAoB,GAC7B,OAAO,CAAC,mBAAmB,EAAE,CAAC,CAchC;AAED;;GAEG;AACH,wBAAsB,sBAAsB,CAC1C,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,4BAA4B,GACpC,OAAO,CAAC,mBAAmB,EAAE,CAAC,CAMhC;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAsBtD"}

package/dist/services/hook.js

@@ -62,6 +62,12 @@ async function buildHookJsonInput(context) {
             jsonInput.name = context.worktreeName;
         }
     }
+    // Add worktree_path field for WorktreeRemove events
+    if (context.event === "WorktreeRemove") {
+        if (context.worktreePath !== undefined) {
+            jsonInput.worktree_path = context.worktreePath;
+        }
+    }
     // Add SessionStart-specific fields
     if (context.event === "SessionStart") {
         if (context.source !== undefined) {

package/dist/services/initializationService.d.ts.map

@@ -1 +1 @@
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package/dist/services/initializationService.js

@@ -192,7 +192,7 @@ export class InitializationService {
             if (sessionToRestore) {
                 messageManager.initializeFromSession(sessionToRestore);
                 // Update task manager with the root session ID to ensure continuity across compactions
-                taskManager.setTaskListId(sessionToRestore.rootSessionId || sessionToRestore.id);
+                taskManager.setTaskListId(sessionToRestore.id);
                 // After session is initialized, load tasks for the session
                 const tasks = await taskManager.listTasks();
                 agentOptions.callbacks?.onTasksChange?.(tasks);

package/dist/services/interactionService.js

@@ -92,7 +92,7 @@ export class InteractionService {
         // 6. Initialize session state last
         messageManager.initializeFromSession(sessionData);
         // Update task manager with the root session ID to ensure continuity across compactions
-        taskManager.setTaskListId(sessionData.rootSessionId || sessionData.id);
+        taskManager.setTaskListId(sessionData.id);
         // 7. Load tasks for the restored session
         const tasks = await taskManager.listTasks();
         options.callbacks?.onTasksChange?.(tasks);

package/dist/services/reversionService.d.ts

@@ -5,7 +5,6 @@ export declare class ReversionService {
     constructor(rootSessionId: string);
     private getFilePathHash;
     private getNextVersion;
-    private updateVersionsFile;
     /**
      * Saves a single snapshot to the file history directory.
      * Returns the snapshot path.
@@ -19,6 +18,11 @@ export declare class ReversionService {
      * Deletes all snapshots for this session.
      */
     deleteSessionHistory(): Promise<void>;
+    /**
+     * Cleans up session directories older than the given number of days.
+     * Skips the current session.
+     */
+    cleanupOldSessions(days?: number): Promise<void>;
     private ensureDirectory;
 }
 //# sourceMappingURL=reversionService.d.ts.map

package/dist/services/reversionService.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"reversionService.d.ts","sourceRoot":"","sources":["../../src/services/reversionService.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAC;AAErD,qBAAa,gBAAgB;IAC3B,OAAO,CAAC,cAAc,CAAS;IAC/B,OAAO,CAAC,aAAa,CAAS;gBAElB,aAAa,EAAE,MAAM;IAUjC,OAAO,CAAC,eAAe;YAIT,cAAc;IAoB5B;;;OAGG;IACG,YAAY,CAAC,QAAQ,EAAE,YAAY,GAAG,OAAO,CAAC,MAAM,CAAC;IAqB3D;;OAEG;IACG,mBAAmB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC;IAWvE;;OAEG;IACG,oBAAoB,IAAI,OAAO,CAAC,IAAI,CAAC;IAI3C;;;OAGG;IACG,kBAAkB,CAAC,IAAI,GAAE,MAAW,GAAG,OAAO,CAAC,IAAI,CAAC;YAwB5C,eAAe;CAG9B"}

package/dist/services/reversionService.js

@@ -1,41 +1,44 @@
-import { readFile, writeFile, mkdir, rm } from "fs/promises";
-import { join } from "path";
+import { readFile, writeFile, mkdir, rm, readdir, stat } from "fs/promises";
+import { join, dirname } from "path";
 import { homedir } from "os";
 import { createHash } from "crypto";
 export class ReversionService {
     constructor(rootSessionId) {
-        this.rootSessionId = rootSessionId;
-        this.historyBaseDir = join(homedir(), ".wave", "file-history", rootSessionId || "default");
+        this.rootSessionId = rootSessionId || "default";
+        this.historyBaseDir = join(homedir(), ".wave", "file-history", this.rootSessionId);
     }
     getFilePathHash(filePath) {
-        return createHash("md5").update(filePath).digest("hex");
+        return createHash("sha256").update(filePath).digest("hex").slice(0, 16);
     }
-    async getNextVersion(fileHashDir) {
+    async getNextVersion(filePath) {
+        const hash = this.getFilePathHash(filePath);
+        const prefix = `${hash}@v`;
         try {
-            const files = await readFile(join(fileHashDir, "versions"), "utf-8");
-            const versions = files
-                .split("\n")
-                .map((v) => parseInt(v, 10))
-                .filter((v) => !isNaN(v));
-            return versions.length > 0 ? Math.max(...versions) + 1 : 1;
+            const files = await readdir(this.historyBaseDir);
+            let maxVersion = 0;
+            for (const file of files) {
+                if (file.startsWith(prefix)) {
+                    const v = parseInt(file.slice(prefix.length), 10);
+                    if (!isNaN(v) && v > maxVersion) {
+                        maxVersion = v;
+                    }
+                }
+            }
+            return maxVersion + 1;
         }
         catch {
             return 1;
         }
     }
-    async updateVersionsFile(fileHashDir, version) {
-        await appendFile(join(fileHashDir, "versions"), `${version}\n`, "utf-8");
-    }
     /**
      * Saves a single snapshot to the file history directory.
      * Returns the snapshot path.
      */
     async saveSnapshot(snapshot) {
         const fileHash = this.getFilePathHash(snapshot.filePath);
-        const fileHashDir = join(this.historyBaseDir, fileHash);
-        await this.ensureDirectory(fileHashDir);
-        const version = await this.getNextVersion(fileHashDir);
-        const snapshotPath = join(fileHashDir, `v${version}`);
+        await this.ensureDirectory(this.historyBaseDir);
+        const version = await this.getNextVersion(snapshot.filePath);
+        const snapshotPath = join(this.historyBaseDir, `${fileHash}@v${version}`);
         const snapshotWithContent = snapshot;
         if (snapshotWithContent.content !== null) {
             await writeFile(snapshotPath, snapshotWithContent.content, "utf-8");
@@ -45,7 +48,6 @@ export class ReversionService {
             // The absence of the file at snapshotPath will indicate it should be deleted on reversion.
             return ""; // Return empty string to indicate no snapshot file
         }
-        await this.updateVersionsFile(fileHashDir, version);
         return snapshotPath;
     }
     /**
@@ -68,9 +70,35 @@ export class ReversionService {
     async deleteSessionHistory() {
         await rm(this.historyBaseDir, { recursive: true, force: true });
     }
+    /**
+     * Cleans up session directories older than the given number of days.
+     * Skips the current session.
+     */
+    async cleanupOldSessions(days = 30) {
+        const threshold = Date.now() - days * 24 * 60 * 60 * 1000;
+        const parentDir = dirname(this.historyBaseDir);
+        try {
+            const entries = await readdir(parentDir);
+            await Promise.all(entries.map(async (entry) => {
+                if (entry === this.rootSessionId)
+                    return;
+                const dirPath = join(parentDir, entry);
+                try {
+                    const stats = await stat(dirPath);
+                    if (stats.isDirectory() && stats.mtimeMs < threshold) {
+                        await rm(dirPath, { recursive: true, force: true });
+                    }
+                }
+                catch {
+                    // ENOENT — concurrently deleted, skip
+                }
+            }));
+        }
+        catch {
+            // parent dir doesn't exist — nothing to clean
+        }
+    }
     async ensureDirectory(dirPath) {
         await mkdir(dirPath, { recursive: true });
     }
 }
-// Helper to avoid appendFile import error if not imported
-import { appendFile } from "fs/promises";

package/dist/services/session.d.ts

@@ -17,8 +17,6 @@
 import type { Message } from "../types/index.js";
 export interface SessionData {
     id: string;
-    rootSessionId?: string;
-    parentSessionId?: string;
     messages: Message[];
     metadata: {
         workdir: string;
@@ -28,8 +26,6 @@ export interface SessionData {
 }
 export interface SessionMetadata {
     id: string;
-    rootSessionId?: string;
-    parentSessionId?: string;
     sessionType: "main" | "subagent";
     subagentType?: string;
     workdir: string;
@@ -38,13 +34,6 @@ export interface SessionMetadata {
     latestTotalTokens: number;
     firstMessage?: string;
 }
-export interface SessionIndex {
-    sessions: Record<string, Omit<SessionMetadata, "id" | "lastActiveAt" | "createdAt"> & {
-        lastActiveAt: string;
-        createdAt: string;
-    }>;
-    lastUpdated: string;
-}
 /**
  * Generate a new session ID using Node.js native crypto.randomUUID()
  * @returns UUID string for session identification
@@ -92,7 +81,7 @@ export declare function createSession(sessionId: string, workdir: string, sessio
  * @param workdir - Working directory for the session
  * @param sessionType - Type of session ("main" or "subagent", defaults to "main")
  */
-export declare function appendMessages(sessionId: string, newMessages: Message[], workdir: string, sessionType?: "main" | "subagent", rootSessionId?: string, parentSessionId?: string): Promise<void>;
+export declare function appendMessages(sessionId: string, newMessages: Message[], workdir: string, sessionType?: "main" | "subagent"): Promise<void>;
 /**
  * Load session data from JSONL file (new approach)
  *
@@ -193,7 +182,9 @@ export declare function truncateContent(content: string, maxLength?: number): st
  */
 export declare function handleSessionRestoration(restoreSessionId?: string, continueLastSession?: boolean, workdir?: string): Promise<SessionData | undefined>;
 /**
- * Load the full message thread by following parentSessionId links
+ * Load the full message thread for a session.
+ * With append-only compaction, all messages are in a single file.
+ * Returns the active messages (post-compact boundary).
  * @param currentSessionId - The ID of the current session
  * @param workdir - Working directory for the session
  * @returns Promise that resolves to an array of all messages in the thread

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