wave-agent-sdk 0.11.4 → 0.11.6

package/dist/managers/backgroundTaskManager.js

@@ -16,7 +16,7 @@ export class BackgroundTaskManager {
         this.callbacks.onBackgroundTasksChange?.(Array.from(this.tasks.values()));
     }
     generateId() {
-        return `task_${this.nextId++}`;
+        return `task_${process.pid}_${this.nextId++}`;
     }
     addTask(task) {
         this.tasks.set(task.id, task);
@@ -41,7 +41,7 @@ export class BackgroundTaskManager {
         });
         // Create log file
         const logPath = path.join(os.tmpdir(), `wave-task-${id}.log`);
-        const logStream = fs.createWriteStream(logPath, { flags: "a" });
+        const logStream = fs.createWriteStream(logPath, { flags: "w" });
         const shell = {
             id,
             type: "shell",
@@ -156,7 +156,7 @@ export class BackgroundTaskManager {
         const startTime = Date.now();
         // Create log file
         const logPath = path.join(os.tmpdir(), `wave-task-${id}.log`);
-        const logStream = fs.createWriteStream(logPath, { flags: "a" });
+        const logStream = fs.createWriteStream(logPath, { flags: "w" });
         // Write initial output to log file
         if (initialStdout) {
             logStream.write(stripAnsiColors(initialStdout));

package/dist/managers/mcpManager.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"mcpManager.d.ts","sourceRoot":"","sources":["../../src/managers/mcpManager.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,0BAA0B,EAAE,MAAM,qBAAqB,CAAC;AAEjE,OAAO,KAAK,EAAE,UAAU,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAC7E,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AAClD,OAAO,KAAK,EACV,MAAM,EACN,eAAe,EACf,SAAS,EACT,OAAO,EACP,eAAe,EAChB,MAAM,mBAAmB,CAAC;AAQ3B,MAAM,WAAW,mBAAmB;IAClC,eAAe,CAAC,EAAE,CAAC,OAAO,EAAE,eAAe,EAAE,KAAK,IAAI,CAAC;CACxD;AAID,MAAM,WAAW,iBAAiB;IAChC,SAAS,CAAC,EAAE,mBAAmB,CAAC;IAChC,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,qBAAa,UAAU;IASnB,OAAO,CAAC,SAAS;IARnB,OAAO,CAAC,MAAM,CAA0B;IACxC,OAAO,CAAC,OAAO,CAA2C;IAC1D,OAAO,CAAC,WAAW,CAAyC;IAC5D,OAAO,CAAC,UAAU,CAAc;IAChC,OAAO,CAAC,OAAO,CAAc;IAC7B,OAAO,CAAC,SAAS,CAAsB;gBAG7B,SAAS,EAAE,SAAS,EAC5B,OAAO,GAAE,iBAAsB;IAKjC;;OAEG;IACG,UAAU,CACd,OAAO,EAAE,MAAM,EACf,WAAW,GAAE,OAAe,GAC3B,OAAO,CAAC,IAAI,CAAC;IAuCV,kBAAkB,IAAI,OAAO,CAAC,SAAS,GAAG,IAAI,CAAC;IAO/C,UAAU,IAAI,OAAO,CAAC,SAAS,GAAG,IAAI,CAAC;IA0CvC,UAAU,CAAC,MAAM,EAAE,SAAS,GAAG,OAAO,CAAC,OAAO,CAAC;IAWrD,SAAS,IAAI,SAAS,GAAG,IAAI;IAI7B,aAAa,IAAI,eAAe,EAAE;IAIlC,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,eAAe,GAAG,SAAS;IAIpD,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,CAAC,eAAe,CAAC,GAAG,IAAI;IASzE,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,eAAe,GAAG,OAAO;IAyBzD,YAAY,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAgB7B,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IAqH7C,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,OAAO,CAAC;IA2BtD,oBAAoB,IAAI,OAAO,EAAE;IAW3B,cAAc,CAClB,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,OAAO,CAAC,EAAE,WAAW,GACpB,OAAO,CAAC;QACT,OAAO,EAAE,OAAO,CAAC;QACjB,OAAO,EAAE,MAAM,CAAC;QAChB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,MAAM,CAAC,EAAE,KAAK,CAAC;YAAE,IAAI,EAAE,MAAM,CAAC;YAAC,SAAS,CAAC,EAAE,MAAM,CAAA;SAAE,CAAC,CAAC;KACtD,CAAC;YAsDY,uBAAuB;IA8D/B,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC;IAS9B;;OAEG;IACH,iBAAiB,IAAI,UAAU,EAAE;IA6BjC;;OAEG;IACH,iBAAiB,IAAI,0BAA0B,EAAE;IAIjD;;OAEG;IACG,wBAAwB,CAC5B,IAAI,EAAE,MAAM,EACZ,IAAI,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAC7B,OAAO,EAAE,WAAW,GACnB,OAAO,CAAC,UAAU,CAAC;IActB;;OAEG;IACH,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;CAcjC"}

package/dist/managers/mcpManager.js

@@ -25,27 +25,25 @@ export class McpManager {
             // Ensure MCP configuration is loaded
             const config = await this.ensureConfigLoaded();
             if (config && config.mcpServers) {
-                // Connect to all configured servers
-                const connectionPromises = Object.keys(config.mcpServers).map(async (serverName) => {
-                    try {
-                        logger?.debug(`Connecting to MCP server: ${serverName}`);
-                        const success = await this.connectServer(serverName);
+                // Connect to all configured servers in background to avoid blocking agent initialization
+                Object.keys(config.mcpServers).forEach((serverName) => {
+                    logger?.debug(`Connecting to MCP server: ${serverName}`);
+                    this.connectServer(serverName)
+                        .then((success) => {
                         if (success) {
                             logger?.debug(`Successfully connected to MCP server: ${serverName}`);
                         }
                         else {
                             logger?.warn(`Failed to connect to MCP server: ${serverName}`);
                         }
-                    }
-                    catch {
-                        logger?.error(`Error connecting to MCP server ${serverName}`);
-                    }
+                    })
+                        .catch((error) => {
+                        logger?.error(`Background connection to MCP server ${serverName} failed:`, error);
+                    });
                 });
-                // Wait for all connection attempts to complete
-                await Promise.all(connectionPromises);
             }
-            logger?.debug("MCP servers initialization completed");
-            // Trigger state change callback after initialization
+            logger?.debug("MCP servers initialization started in background");
+            // Trigger state change callback after starting initialization
             this.callbacks.onServersChange?.(this.getAllServers());
         }
     }
@@ -168,9 +166,33 @@ export class McpManager {
             const transport = new StdioClientTransport({
                 command: server.config.command,
                 args: server.config.args || [],
-                env: server.config.env || {},
+                env: {
+                    ...process.env,
+                    ...(server.config.env || {}),
+                },
                 cwd: this.workdir, // Use the agent's workdir as the process working directory
+                stderr: "pipe", // Pipe stderr to capture it
             });
+            // Handle stderr output
+            const stderr = transport.stderr;
+            if (stderr) {
+                let buffer = "";
+                stderr.on("data", (chunk) => {
+                    buffer += chunk.toString();
+                    const lines = buffer.split("\n");
+                    buffer = lines.pop() || "";
+                    for (const line of lines) {
+                        if (line.trim()) {
+                            logger?.error(`[MCP Server ${name}] ${line}`);
+                        }
+                    }
+                });
+                stderr.on("end", () => {
+                    if (buffer.trim()) {
+                        logger?.error(`[MCP Server ${name}] ${buffer}`);
+                    }
+                });
+            }
             // Create client
             const client = new Client({
                 name: "wave-code",

package/dist/managers/permissionManager.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"permissionManager.d.ts","sourceRoot":"","sources":["../../src/managers/permissionManager.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAIH,OAAO,KAAK,EACV,kBAAkB,EAClB,qBAAqB,EACrB,kBAAkB,EAClB,cAAc,EACf,MAAM,yBAAyB,CAAC;AAEjC,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,mBAAmB,CAAC;AAiBhD,OAAO,EAAE,SAAS,EAAE,MAAM,uBAAuB,CAAC;AA8DlD,MAAM,WAAW,wBAAwB;IACvC,+CAA+C;IAC/C,wBAAwB,CAAC,EAAE,cAAc,CAAC;IAC1C,kCAAkC;IAClC,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,iCAAiC;IACjC,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;IACvB,0DAA0D;IAC1D,oBAAoB,CAAC,EAAE,MAAM,EAAE,CAAC;IAChC,yDAAyD;IACzD,mBAAmB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC/B,8DAA8D;IAC9D,qBAAqB,CAAC,EAAE,MAAM,EAAE,CAAC;IACjC,iCAAiC;IACjC,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,oCAAoC;IACpC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,sBAAsB;IACtB,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,qBAAa,iBAAiB;IAiB1B,OAAO,CAAC,SAAS;IAhBnB,OAAO,CAAC,wBAAwB,CAAC,CAAiB;IAClD,OAAO,CAAC,YAAY,CAAgB;IACpC,OAAO,CAAC,WAAW,CAAgB;IACnC,OAAO,CAAC,oBAAoB,CAAgB;IAC5C,OAAO,CAAC,mBAAmB,CAAgB;IAC3C,OAAO,CAAC,cAAc,CAAgB;IACtC,OAAO,CAAC,qBAAqB,CAAgB;IAC7C,OAAO,CAAC,2BAA2B,CAAgB;IACnD,OAAO,CAAC,OAAO,CAAC,CAAS;IACzB,OAAO,CAAC,YAAY,CAAC,CAAS;IAC9B,OAAO,CAAC,YAAY,CAAC,CAAS;IAC9B,OAAO,CAAC,YAAY,CAAC,CAAS;IAC9B,OAAO,CAAC,gCAAgC,CAAC,CAAiC;IAC1E,OAAO,CAAC,OAAO,CAAC,CAAS;gBAGf,SAAS,EAAE,SAAS,EAC5B,OAAO,GAAE,wBAA6B;IAgBxC;;OAEG;IACI,mCAAmC,CACxC,QAAQ,EAAE,CAAC,IAAI,EAAE,cAAc,KAAK,IAAI,GACvC,IAAI;IAIP;;OAEG;IACH,8BAA8B,CAAC,cAAc,CAAC,EAAE,cAAc,GAAG,IAAI;IAcrE;;OAEG;IACI,2BAA2B,IAAI,cAAc,GAAG,SAAS;IAIhE;;OAEG;IACI,eAAe,IAAI,MAAM,EAAE;IAIlC;;OAEG;IACI,cAAc,IAAI,MAAM,EAAE;IAIjC;;OAEG;IACI,uBAAuB,IAAI,MAAM,EAAE;IAI1C;;OAEG;IACI,sBAAsB,IAAI,MAAM,EAAE;IAIzC;;OAEG;IACI,wBAAwB,IAAI,MAAM,EAAE;IAI3C;;OAEG;IACI,sBAAsB,IAAI,MAAM,EAAE;IAIzC;;OAEG;IACH,kBAAkB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,IAAI;IAIzC;;OAEG;IACH,iBAAiB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,IAAI;IAIxC;;OAEG;IACI,iBAAiB,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,IAAI;IAI/C;;OAEG;IACI,mBAAmB,IAAI,IAAI;IAIlC;;OAEG;IACH,2BAA2B,CAAC,WAAW,EAAE,MAAM,EAAE,GAAG,IAAI;IASxD;;OAEG;IACI,4BAA4B,CAAC,SAAS,EAAE,MAAM,GAAG,IAAI;IAW5D;;OAEG;IACH,aAAa,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI;IAIpC;;OAEG;IACI,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI;IAItD;;OAEG;IACI,eAAe,IAAI,MAAM,GAAG,SAAS;IAI5C;;OAEG;IACH,OAAO,CAAC,gBAAgB;IAkCxB;;OAEG;IACH,uBAAuB,CAAC,iBAAiB,CAAC,EAAE,cAAc,GAAG,cAAc;IAI3E;;OAEG;IACH,8BAA8B,CAC5B,iBAAiB,CAAC,EAAE,cAAc,GACjC,cAAc;IAejB;;;OAGG;IACG,eAAe,CACnB,OAAO,EAAE,qBAAqB,GAC7B,OAAO,CAAC,kBAAkB,CAAC;IAqP9B;;OAEG;IACH,gBAAgB,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO;IAO3C;;OAEG;IACI,YAAY,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO;IAc9C;;OAEG;IACH,aAAa,CACX,QAAQ,EAAE,MAAM,EAChB,cAAc,EAAE,cAAc,EAC9B,QAAQ,CAAC,EAAE,kBAAkB,EAC7B,SAAS,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EACnC,UAAU,CAAC,EAAE,MAAM,EACnB,WAAW,CAAC,EAAE,MAAM,GACnB,qBAAqB;IAoFxB;;OAEG;IACH,OAAO,CAAC,WAAW;IA0EnB;;OAEG;IACH,OAAO,CAAC,eAAe;IAkHvB;;;;;;;OAOG;IACI,cAAc,CAAC,OAAO,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE;IA+FjE;;;OAGG;IACU,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;CA4C5D"}

package/dist/managers/permissionManager.js

@@ -8,7 +8,7 @@
 import path from "node:path";
 import { minimatch } from "minimatch";
 import { RESTRICTED_TOOLS } from "../types/permissions.js";
-import { splitBashCommand, stripEnvVars, stripRedirections, hasWriteRedirections, getSmartPrefix, DANGEROUS_COMMANDS, } from "../utils/bashParser.js";
+import { splitBashCommand, stripEnvVars, stripRedirections, hasWriteRedirections, isBashHeredocWrite, getSmartPrefix, DANGEROUS_COMMANDS, } from "../utils/bashParser.js";
 import { isPathInside } from "../utils/pathSafety.js";
 import { BASH_TOOL_NAME, EDIT_TOOL_NAME, WRITE_TOOL_NAME, READ_TOOL_NAME, } from "../constants/tools.js";
 const SAFE_COMMANDS = [
@@ -23,6 +23,7 @@ const SAFE_COMMANDS = [
     "head",
     "tail",
     "wc",
+    "sleep",
 ];
 const DEFAULT_ALLOWED_RULES = [
     "Bash(git status*)",
@@ -63,6 +64,7 @@ const DEFAULT_ALLOWED_RULES = [
     "Bash(head*)",
     "Bash(tail*)",
     "Bash(wc*)",
+    "Bash(sleep*)",
 ];
 import { logger } from "../utils/globalLogger.js";
 export class PermissionManager {
@@ -264,6 +266,34 @@ export class PermissionManager {
      * Called by individual tools after validation/diff, before real operation
      */
     async checkPermission(context) {
+        // 0. Intercept Bash EOF writing operations
+        if (context.toolName === BASH_TOOL_NAME && context.toolInput?.command) {
+            const command = String(context.toolInput.command);
+            if (isBashHeredocWrite(command)) {
+                // Check if this specific command is explicitly allowed by a rule that includes redirection
+                const isExplicitlyAllowed = [
+                    ...this.instanceAllowedRules,
+                    ...this.temporaryRules,
+                    ...this.allowedRules,
+                    ...DEFAULT_ALLOWED_RULES,
+                ].some((rule) => {
+                    if (rule.startsWith("Bash(") && rule.endsWith(")")) {
+                        const pattern = rule.substring(5, rule.length - 1);
+                        // If the pattern itself has write redirections, we check if it matches
+                        if (hasWriteRedirections(pattern)) {
+                            return this.matchesRule(context, rule);
+                        }
+                    }
+                    return false;
+                });
+                if (!isExplicitlyAllowed) {
+                    return {
+                        behavior: "deny",
+                        message: "Bash-based file writing operations using heredocs (e.g., 'cat <<EOF > file') are not allowed. Please use the dedicated 'Write' or 'Edit' tools instead for file modifications.",
+                    };
+                }
+            }
+        }
         // 0. Check instance-specific denied rules first - Deny always takes precedence
         for (const rule of this.instanceDeniedRules) {
             if (this.matchesRule(context, rule)) {
@@ -627,7 +657,8 @@ export class PermissionManager {
                                     cmd === "cat" ||
                                     cmd === "head" ||
                                     cmd === "tail" ||
-                                    cmd === "wc") {
+                                    cmd === "wc" ||
+                                    cmd === "sleep") {
                                     return true;
                                 }
                                 if (workdir) {
@@ -715,7 +746,8 @@ export class PermissionManager {
                         cmd === "cat" ||
                         cmd === "head" ||
                         cmd === "tail" ||
-                        cmd === "wc") {
+                        cmd === "wc" ||
+                        cmd === "sleep") {
                         isSafe = true;
                     }
                     else {

package/dist/utils/bashParser.d.ts

@@ -15,6 +15,14 @@ export declare function stripRedirections(command: string): string;
  * Checks if a bash command contains any write redirections (>, >>, &>, 2>, >|).
  */
 export declare function hasWriteRedirections(command: string): boolean;
+/**
+ * Checks if a bash command contains any heredocs (<<, <<-).
+ */
+export declare function hasHeredoc(command: string): boolean;
+/**
+ * Checks if a bash command is a heredoc write operation (e.g., cat <<EOF > file).
+ */
+export declare function isBashHeredocWrite(command: string): boolean;
 /**
  * Blacklist of dangerous commands that should not be safely prefix-matched
  * and should not have persistent permissions.

package/dist/utils/bashParser.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bashParser.d.ts","sourceRoot":"","sources":["../../src/utils/bashParser.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAmH1D;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CA2CpD;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAuHzD;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CA4F7D;AAED;;;GAGG;AACH,eAAO,MAAM,kBAAkB,UAa9B,CAAC;AAEF;;;GAGG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CA8L7D"}
+{"version":3,"file":"bashParser.d.ts","sourceRoot":"","sources":["../../src/utils/bashParser.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,EAAE,CAoH1D;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CA2CpD;AAED;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAuHzD;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAkG7D;AAED;;GAEG;AACH,wBAAgB,UAAU,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAsCnD;AAED;;GAEG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAE3D;AAED;;;GAGG;AACH,eAAO,MAAM,kBAAkB,UAa9B,CAAC;AAEF;;;GAGG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CA8L7D"}

package/dist/utils/bashParser.js

@@ -53,7 +53,7 @@ export function splitBashCommand(command) {
             opLen = 1;
         else if (char === "|")
             opLen = 1;
-        else if (char === "&" && nextChar !== ">")
+        else if (char === "&" && nextChar !== ">" && command[i - 1] !== ">")
             opLen = 1;
         if (opLen > 0) {
             // Check if preceded by an odd number of backslashes
@@ -350,11 +350,56 @@ export function hasWriteRedirections(command) {
                 i = k - 1; // Move the main loop index to the end of the target
                 continue;
             }
+            // Ignore file descriptor redirections like 2>&1, >&2, etc.
+            if (target.startsWith("&") && /^\d+$/.test(target.substring(1))) {
+                i = k - 1;
+                continue;
+            }
+            return true;
+        }
+    }
+    return false;
+}
+/**
+ * Checks if a bash command contains any heredocs (<<, <<-).
+ */
+export function hasHeredoc(command) {
+    let inSingleQuote = false;
+    let inDoubleQuote = false;
+    let escaped = false;
+    for (let i = 0; i < command.length; i++) {
+        const char = command[i];
+        if (escaped) {
+            escaped = false;
+            continue;
+        }
+        if (char === "\\") {
+            escaped = true;
+            continue;
+        }
+        if (char === "'" && !inDoubleQuote) {
+            inSingleQuote = !inSingleQuote;
+            continue;
+        }
+        if (char === '"' && !inSingleQuote) {
+            inDoubleQuote = !inDoubleQuote;
+            continue;
+        }
+        if (inSingleQuote || inDoubleQuote) {
+            continue;
+        }
+        if (char === "<" && command[i + 1] === "<") {
             return true;
         }
     }
     return false;
 }
+/**
+ * Checks if a bash command is a heredoc write operation (e.g., cat <<EOF > file).
+ */
+export function isBashHeredocWrite(command) {
+    return hasHeredoc(command) && hasWriteRedirections(command);
+}
 /**
  * Blacklist of dangerous commands that should not be safely prefix-matched
  * and should not have persistent permissions.

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "wave-agent-sdk",
-  "version": "0.11.4",
+  "version": "0.11.6",
   "description": "SDK for building AI-powered development tools and agents",
   "keywords": [
     "ai",

package/src/managers/backgroundTaskManager.ts

@@ -35,7 +35,7 @@ export class BackgroundTaskManager {
   }
 
   public generateId(): string {
-    return `task_${this.nextId++}`;
+    return `task_${process.pid}_${this.nextId++}`;
   }
 
   public addTask(task: BackgroundTask): void {
@@ -69,7 +69,7 @@ export class BackgroundTaskManager {
 
     // Create log file
     const logPath = path.join(os.tmpdir(), `wave-task-${id}.log`);
-    const logStream = fs.createWriteStream(logPath, { flags: "a" });
+    const logStream = fs.createWriteStream(logPath, { flags: "w" });
 
     const shell: BackgroundShell = {
       id,
@@ -198,7 +198,7 @@ export class BackgroundTaskManager {
 
     // Create log file
     const logPath = path.join(os.tmpdir(), `wave-task-${id}.log`);
-    const logStream = fs.createWriteStream(logPath, { flags: "a" });
+    const logStream = fs.createWriteStream(logPath, { flags: "w" });
 
     // Write initial output to log file
     if (initialStdout) {

package/src/managers/mcpManager.ts

@@ -63,12 +63,11 @@ export class McpManager {
       const config = await this.ensureConfigLoaded();
 
       if (config && config.mcpServers) {
-        // Connect to all configured servers
-        const connectionPromises = Object.keys(config.mcpServers).map(
-          async (serverName) => {
-            try {
-              logger?.debug(`Connecting to MCP server: ${serverName}`);
-              const success = await this.connectServer(serverName);
+        // Connect to all configured servers in background to avoid blocking agent initialization
+        Object.keys(config.mcpServers).forEach((serverName) => {
+          logger?.debug(`Connecting to MCP server: ${serverName}`);
+          this.connectServer(serverName)
+            .then((success) => {
               if (success) {
                 logger?.debug(
                   `Successfully connected to MCP server: ${serverName}`,
@@ -76,18 +75,18 @@ export class McpManager {
               } else {
                 logger?.warn(`Failed to connect to MCP server: ${serverName}`);
               }
-            } catch {
-              logger?.error(`Error connecting to MCP server ${serverName}`);
-            }
-          },
-        );
-
-        // Wait for all connection attempts to complete
-        await Promise.all(connectionPromises);
+            })
+            .catch((error) => {
+              logger?.error(
+                `Background connection to MCP server ${serverName} failed:`,
+                error,
+              );
+            });
+        });
       }
 
-      logger?.debug("MCP servers initialization completed");
-      // Trigger state change callback after initialization
+      logger?.debug("MCP servers initialization started in background");
+      // Trigger state change callback after starting initialization
       this.callbacks.onServersChange?.(this.getAllServers());
     }
   }
@@ -228,10 +227,35 @@ export class McpManager {
       const transport = new StdioClientTransport({
         command: server.config.command,
         args: server.config.args || [],
-        env: server.config.env || {},
+        env: {
+          ...(process.env as Record<string, string>),
+          ...(server.config.env || {}),
+        },
         cwd: this.workdir, // Use the agent's workdir as the process working directory
+        stderr: "pipe", // Pipe stderr to capture it
       });
 
+      // Handle stderr output
+      const stderr = transport.stderr;
+      if (stderr) {
+        let buffer = "";
+        stderr.on("data", (chunk: Buffer) => {
+          buffer += chunk.toString();
+          const lines = buffer.split("\n");
+          buffer = lines.pop() || "";
+          for (const line of lines) {
+            if (line.trim()) {
+              logger?.error(`[MCP Server ${name}] ${line}`);
+            }
+          }
+        });
+        stderr.on("end", () => {
+          if (buffer.trim()) {
+            logger?.error(`[MCP Server ${name}] ${buffer}`);
+          }
+        });
+      }
+
       // Create client
       const client = new Client(
         {

package/src/managers/permissionManager.ts

@@ -21,6 +21,7 @@ import {
   stripEnvVars,
   stripRedirections,
   hasWriteRedirections,
+  isBashHeredocWrite,
   getSmartPrefix,
   DANGEROUS_COMMANDS,
 } from "../utils/bashParser.js";
@@ -46,6 +47,7 @@ const SAFE_COMMANDS = [
   "head",
   "tail",
   "wc",
+  "sleep",
 ];
 
 const DEFAULT_ALLOWED_RULES = [
@@ -87,6 +89,7 @@ const DEFAULT_ALLOWED_RULES = [
   "Bash(head*)",
   "Bash(tail*)",
   "Bash(wc*)",
+  "Bash(sleep*)",
 ];
 
 import { logger } from "../utils/globalLogger.js";
@@ -367,6 +370,37 @@ export class PermissionManager {
   async checkPermission(
     context: ToolPermissionContext,
   ): Promise<PermissionDecision> {
+    // 0. Intercept Bash EOF writing operations
+    if (context.toolName === BASH_TOOL_NAME && context.toolInput?.command) {
+      const command = String(context.toolInput.command);
+      if (isBashHeredocWrite(command)) {
+        // Check if this specific command is explicitly allowed by a rule that includes redirection
+        const isExplicitlyAllowed = [
+          ...this.instanceAllowedRules,
+          ...this.temporaryRules,
+          ...this.allowedRules,
+          ...DEFAULT_ALLOWED_RULES,
+        ].some((rule) => {
+          if (rule.startsWith("Bash(") && rule.endsWith(")")) {
+            const pattern = rule.substring(5, rule.length - 1);
+            // If the pattern itself has write redirections, we check if it matches
+            if (hasWriteRedirections(pattern)) {
+              return this.matchesRule(context, rule);
+            }
+          }
+          return false;
+        });
+
+        if (!isExplicitlyAllowed) {
+          return {
+            behavior: "deny",
+            message:
+              "Bash-based file writing operations using heredocs (e.g., 'cat <<EOF > file') are not allowed. Please use the dedicated 'Write' or 'Edit' tools instead for file modifications.",
+          };
+        }
+      }
+    }
+
     // 0. Check instance-specific denied rules first - Deny always takes precedence
     for (const rule of this.instanceDeniedRules) {
       if (this.matchesRule(context, rule)) {
@@ -816,7 +850,8 @@ export class PermissionManager {
                   cmd === "cat" ||
                   cmd === "head" ||
                   cmd === "tail" ||
-                  cmd === "wc"
+                  cmd === "wc" ||
+                  cmd === "sleep"
                 ) {
                   return true;
                 }
@@ -929,7 +964,8 @@ export class PermissionManager {
             cmd === "cat" ||
             cmd === "head" ||
             cmd === "tail" ||
-            cmd === "wc"
+            cmd === "wc" ||
+            cmd === "sleep"
           ) {
             isSafe = true;
           } else {

package/src/utils/bashParser.ts

@@ -58,7 +58,8 @@ export function splitBashCommand(command: string): string[] {
     else if (char === "|" && nextChar === "&") opLen = 2;
     else if (char === ";") opLen = 1;
     else if (char === "|") opLen = 1;
-    else if (char === "&" && nextChar !== ">") opLen = 1;
+    else if (char === "&" && nextChar !== ">" && command[i - 1] !== ">")
+      opLen = 1;
 
     if (opLen > 0) {
       // Check if preceded by an odd number of backslashes
@@ -381,6 +382,12 @@ export function hasWriteRedirections(command: string): boolean {
         continue;
       }
 
+      // Ignore file descriptor redirections like 2>&1, >&2, etc.
+      if (target.startsWith("&") && /^\d+$/.test(target.substring(1))) {
+        i = k - 1;
+        continue;
+      }
+
       return true;
     }
   }
@@ -388,6 +395,56 @@ export function hasWriteRedirections(command: string): boolean {
   return false;
 }
 
+/**
+ * Checks if a bash command contains any heredocs (<<, <<-).
+ */
+export function hasHeredoc(command: string): boolean {
+  let inSingleQuote = false;
+  let inDoubleQuote = false;
+  let escaped = false;
+
+  for (let i = 0; i < command.length; i++) {
+    const char = command[i];
+
+    if (escaped) {
+      escaped = false;
+      continue;
+    }
+
+    if (char === "\\") {
+      escaped = true;
+      continue;
+    }
+
+    if (char === "'" && !inDoubleQuote) {
+      inSingleQuote = !inSingleQuote;
+      continue;
+    }
+
+    if (char === '"' && !inSingleQuote) {
+      inDoubleQuote = !inDoubleQuote;
+      continue;
+    }
+
+    if (inSingleQuote || inDoubleQuote) {
+      continue;
+    }
+
+    if (char === "<" && command[i + 1] === "<") {
+      return true;
+    }
+  }
+
+  return false;
+}
+
+/**
+ * Checks if a bash command is a heredoc write operation (e.g., cat <<EOF > file).
+ */
+export function isBashHeredocWrite(command: string): boolean {
+  return hasHeredoc(command) && hasWriteRedirections(command);
+}
+
 /**
  * Blacklist of dangerous commands that should not be safely prefix-matched
  * and should not have persistent permissions.