w-cluster 1.0.9 → 1.0.12

package/src/WCluster.mjs

@@ -11,33 +11,6 @@ import WClusterCore from './WClusterCore.mjs'
  * @param {Number} [opt.nCompNIPALS=2] 輸入指定降維的維度整數，不能超過數據的維度(各列有效元素數量)，預設2
  * @return {Promise} 回傳Promise，resolve回傳指定維數數值的陣列，reject回傳錯誤訊息
  * @example
- *
- * async function testPCA() {
- *
- *     let mat = [
- *         [40, 50, 60],
- *         [50, 70, 60],
- *         [80, 70, 90],
- *         [50, 60, 80]
- *     ]
- *     console.log('mat', mat)
- *     // => mat [ [ 40, 50, 60 ], [ 50, 70, 60 ], [ 80, 70, 90 ], [ 50, 60, 80 ] ]
- *
- *     let resMat = await WCluster.PCA(mat, { nCompNIPALS: 2 })
- *     console.log(resMat)
- *     // => [
- *     //     [ 36.76572825085965, 50.81184119955175, 61.992939427698765 ],
- *     //     [ 50.520478881706346, 69.86935352609807, 59.679283942385844 ],
- *     //     [ 77.39502404588043, 70.65388036857387, 91.60517102143689 ],
- *     //     [ 55.318768821553576, 58.66492490577632, 76.7226056084785 ]
- *     // ]
- *
- * }
- * testPCA()
- *     .catch((err) => {
- *         console.log(err)
- *     })
- *
  */
 async function PCA(data, opt = {}) {
     return WPCAMat(data, opt)
@@ -53,6 +26,7 @@ async function PCA(data, opt = {}) {
  * @param {Number} [opt.nCompNIPALS=2] 輸入指定降維的維度整數，不能超過數據的維度(各列有效元素數量)，預設2
  * @param {String} [opt.mode='k-medoids'] 輸入分群方法字串，可為'k-means'、'k-medoids'，k-means受初始隨機群中心影響較大，預設'k-medoids'
  * @return {Promise} 回傳Promise，resolve回傳分群後結果物件，keys代表分群有使用到的欄位，ginds代表分群後的指標陣列，gltdt代表分群後的物件陣列，gmat代表分群後且經過PCA處理的數據陣列，其內因是降維後的數據，可例如取最左2欄的數據代表x,y來繪製分群後二維分佈圖，reject回傳錯誤訊息
+ * @example
  */
 async function cluster(data, opt = {}) {
     try {
@@ -70,6 +44,50 @@ async function cluster(data, opt = {}) {
  * @return {Object} 回傳物件，其內有PCA與cluster函式，PCA為主成份分析，cluster為分群分析
  * @example
  *
+ * async function testPCA() {
+ *
+ *     let mat = [
+ *         [40, 50, 60],
+ *         [50, 70, 60],
+ *         [80, 70, 90],
+ *         [50, 60, 80]
+ *     ]
+ *     console.log('mat', mat)
+ *     // => mat [ [ 40, 50, 60 ], [ 50, 70, 60 ], [ 80, 70, 90 ], [ 50, 60, 80 ] ]
+ *
+ *     let resMat = await WCluster.PCA(mat, { nCompNIPALS: 2 })
+ *     console.log(resMat)
+ *     // => [
+ *     //   [ -22.27637140016484, -4.7649452046492735 ],
+ *     //   [ -9.12778006150881, 12.303870466192656 ],
+ *     //   [ 31.31672176507748, 0.2183960452169238 ],
+ *     //   [ 0.08742969659617117, -7.757321306760306 ]
+ *     // ]
+ *
+ *     let mat2 = [
+ *         [1040, 50, 60],
+ *         [1050, 70, 60],
+ *         [1080, 70, 90],
+ *         [1050, 60, 80]
+ *     ]
+ *     console.log('mat2', mat2)
+ *     // => mat [ [ 1040, 50, 60 ], [ 1050, 70, 60 ], [ 1080, 70, 90 ], [ 1050, 60, 80 ] ]
+ *
+ *     let resMat2 = await WCluster.PCA(mat2, { nCompNIPALS: 2 })
+ *     console.log(resMat2)
+ *     // => [
+ *     //   [ -22.27637140016484, -4.7649452046492735 ],
+ *     //   [ -9.12778006150881, 12.303870466192656 ],
+ *     //   [ 31.31672176507748, 0.2183960452169238 ],
+ *     //   [ 0.08742969659617117, -7.757321306760306 ]
+ *     // ]
+ *
+ * }
+ * testPCA()
+ *     .catch((err) => {
+ *         console.log(err)
+ *     })
+ *
  * async function testCluster() {
  *     let mode = 'k-medoids'
  *
@@ -90,24 +108,24 @@ async function cluster(data, opt = {}) {
  *     //     [ 2 ],
  *     //     [ 0, 1, 3 ]
  *     //   ],
- *     //   "gltdt": [
+ *     //   "gmat": [
  *     //     [
- *     //       [ 80, 70, 90 ]
+ *     //       [ 31.31672176507748, 0.2183960452169238 ]
  *     //     ],
  *     //     [
- *     //       [ 40, 50, 60 ],
- *     //       [ 50, 70, 60 ],
- *     //       [ 50, 60, 80 ],
+ *     //       [ -22.27637140016484, -4.7649452046492735 ],
+ *     //       [ -9.12778006150881, 12.303870466192656 ],
+ *     //       [ 0.08742969659617117, -7.757321306760306 ]
  *     //     ]
  *     //   ],
- *     //   "dmat": [
+ *     //   "gltdt": [
  *     //     [
- *     //       [77.39502404588043, 70.65388036857387, 91.60517102143689]
+ *     //       [ 80, 70, 90 ]
  *     //     ],
  *     //     [
- *     //       [ 36.76572825085965, 50.81184119955175, 61.992939427698765 ],
- *     //       [ 50.520478881706346, 69.86935352609807, 59.679283942385844],
- *     //       [ 55.318768821553576, 58.66492490577632, 76.7226056084785 ]
+ *     //       [ 40, 50, 60 ],
+ *     //       [ 50, 70, 60 ],
+ *     //       [ 50, 60, 80 ]
  *     //     ]
  *     //   ]
  *     // }
@@ -134,32 +152,24 @@ async function cluster(data, opt = {}) {
  *     //     [ 2 ],
  *     //     [ 0, 1, 3 ]
  *     //   ],
- *     //   "gltdt": [
+ *     //   "gmat": [
  *     //     [
- *     //       {
- *     //         "name": "Paul", "a": 80, "b": 70, "c": 90
- *     //       }
+ *     //       [ 31.31672176507748, 0.2183960452169238 ]
  *     //     ],
  *     //     [
- *     //       {
- *     //         "name": "Cameron", "a": 40, "b": 50, "c": 60
- *     //       },
- *     //       {
- *     //         "name": "Buckley", "a": 50, "b": 70, "c": 60
- *     //       },
- *     //       {
- *     //         "name": "Fawcett", "a": 50, "b": 60, "c": 80
- *     //       }
+ *     //       [ -22.27637140016484, -4.7649452046492735 ],
+ *     //       [ -9.12778006150881, 12.303870466192656 ],
+ *     //       [ 0.08742969659617117, -7.757321306760306 ]
  *     //     ]
  *     //   ],
- *     //   "dmat": [
+ *     //   "gltdt": [
  *     //     [
- *     //       [77.39502404588043, 70.65388036857387, 91.60517102143689]
+ *     //       { "name": "Paul", "a": 80, "b": 70, "c": 90 }
  *     //     ],
  *     //     [
- *     //       [ 36.76572825085965, 50.81184119955175, 61.992939427698765 ],
- *     //       [ 50.520478881706346, 69.86935352609807, 59.679283942385844],
- *     //       [ 55.318768821553576, 58.66492490577632, 76.7226056084785 ]
+ *     //       { "name": "Cameron", "a": 40, "b": 50, "c": 60 },
+ *     //       { "name": "Buckley", "a": 50, "b": 70, "c": 60 },
+ *     //       { "name": "Fawcett", "a": 50, "b": 60, "c": 80 }
  *     //     ]
  *     //   ]
  *     // }

package/src/WClusterCore.mjs

@@ -1,6 +1,7 @@
 import get from 'lodash/get'
 import each from 'lodash/each'
 import size from 'lodash/size'
+// import take from 'lodash/take'
 import map from 'lodash/map'
 import values from 'lodash/values'
 import dtpick from 'wsemi/src/dtpick.mjs'
@@ -59,18 +60,15 @@ function WClusterCore(data, opt = {}) {
     if (!isnum(kNumber)) {
         kNumber = 2
     }
-    else {
-        kNumber = cint(kNumber)
-    }
+    kNumber = cint(kNumber)
 
     //nCompNIPALS
     let nCompNIPALS = get(opt, 'nCompNIPALS')
     if (!isnum(nCompNIPALS)) {
         nCompNIPALS = 2
     }
-    else {
-        nCompNIPALS = cint(nCompNIPALS)
-    }
+    nCompNIPALS = cint(nCompNIPALS)
+    // console.log('nCompNIPALS', nCompNIPALS)
 
     //mode, 由WDataCluster檢核與給予預設值
     let mode = get(opt, 'mode')
@@ -117,6 +115,13 @@ function WClusterCore(data, opt = {}) {
     //WPCAMat
     let pcad = WPCAMat(mat, { nCompNIPALS })
 
+    // //reduce
+    // pcad = map(pcad, (v) => {
+    //     v = take(v, nCompNIPALS)
+    //     return v
+    // })
+    // // console.log('pcad', pcad)
+
     //WClusterMat
     let ginds = WClusterMat(pcad, { kNumber, mode })
 
@@ -136,9 +141,9 @@ function WClusterCore(data, opt = {}) {
 
     return {
         keys: ks,
-        ginds,
-        gltdt,
-        gmat,
+        ginds, //各群所屬樣本指標
+        gmat, //各群所屬主成份分析轉換後樣本數據
+        gltdt, //各群所屬原始樣本數據
     }
 }
 

package/src/WClusterMat.mjs

@@ -43,11 +43,12 @@ function kMedoids(data, kNumber) {
 
 function kMeans(data, kNumber) {
 
-
+    //kmeans
     let r = kmeans(data, kNumber)
-    //k         [ 0, 1, 2, 3 ]
+    //k:        [ 0, 1, 2, 3 ]
     //clusters: [ 0, 0, 1, 0 ]
 
+    //gs
     let gs = {}
     each(r.clusters, (v, k) => {
         if (!gs[v]) {
@@ -93,7 +94,7 @@ function WClusterMat(data, opt = {}) {
         rs = kMeans(data, kNumber)
     }
     else {
-        throw new Error('invalid mode')
+        throw new Error(`invalid mode[${mode}]`)
     }
 
     return rs

package/src/WPCAMat.mjs

@@ -1,9 +1,10 @@
 
 import get from 'lodash/get'
 import size from 'lodash/size'
-import isNumber from 'lodash/isNumber'
-import isBoolean from 'lodash/isBoolean'
 import isearr from 'wsemi/src/isearr.mjs'
+import isbol from 'wsemi/src/isbol.mjs'
+import isnum from 'wsemi/src/isnum.mjs'
+import cint from 'wsemi/src/cint.mjs'
 import { PCA } from 'ml-pca'
 
 
@@ -16,15 +17,16 @@ function WPCAMat(data, opt = {}) {
 
     //scale
     let scale = get(opt, 'scale')
-    if (!isBoolean(scale)) {
-        scale = true //true: divide by the standard deviation
+    if (!isbol(scale)) {
+        scale = false //true: divide by the standard deviation
     }
 
     //nCompNIPALS
     let nCompNIPALS = get(opt, 'nCompNIPALS')
-    if (!isNumber(nCompNIPALS)) {
+    if (!isnum(nCompNIPALS)) {
         nCompNIPALS = 2 //with NIPALS. 指定PCA降維后的特徵數, 也就是降維后的維度
     }
+    nCompNIPALS = cint(nCompNIPALS)
 
     //n
     let n = size(get(data, 0, []))
@@ -36,21 +38,41 @@ function WPCAMat(data, opt = {}) {
 
     //check
     if (nCompNIPALS > n) {
-        throw new Error('nCompNIPALS is more than the dimension of data')
+        throw new Error(`nCompNIPALS[${nCompNIPALS}] is more than the dimension[${n}] of data`)
     }
 
     //pca
     let method = 'NIPALS' //SVD NIPALS
     let pca = new PCA(data, { method, scale, nCompNIPALS })
+    // console.log('pca', pca)
 
-    //transform
-    let tf = pca.predict(data)
+    // //getEigenvalues
+    // let eiva = pca.getEigenvalues()
+    // // console.log('eiva', eiva)
+
+    // //getEigenvectors
+    // let eivt = pca.getEigenvectors()
+    // // console.log('eivt', eivt)
+
+    // //getCumulativeVariance
+    // let cmv = pca.getCumulativeVariance()
+    // // console.log('cmv', cmv)
 
-    //inverse_transform
-    let itf = pca.invert(tf)
+    //predict
+    let tf = pca.predict(data)
+    // console.log('tf', tf)
 
     //res
-    let res = itf.toJSON()
+    let res = tf.toJSON()
+    // console.log('res', res)
+
+    // //invert
+    // let itf = pca.invert(tf)
+    // console.log('itf', itf)
+
+    // //res
+    // let res = itf.toJSON()
+    // // console.log('res', res)
 
     return res
 }

package/test/PCA.test.mjs

@@ -11,10 +11,10 @@ describe(`PCA`, function() {
         [50, 60, 80]
     ]
     let clmat = [
-        [36.76572825085965, 50.81184119955175, 61.992939427698765],
-        [50.520478881706346, 69.86935352609807, 59.679283942385844],
-        [77.39502404588043, 70.65388036857387, 91.60517102143689],
-        [55.318768821553576, 58.66492490577632, 76.7226056084785]
+        [-22.27637140016484, -4.7649452046492735],
+        [-9.12778006150881, 12.303870466192656],
+        [31.31672176507748, 0.2183960452169238],
+        [0.08742969659617117, -7.757321306760306]
     ]
 
     it(`should return '${JSON.stringify(clmat)}' when input ${JSON.stringify(mat)}, { nCompNIPALS: 2 }`, async function() {

package/test/cluster.test.mjs

@@ -12,7 +12,33 @@ describe(`cluster`, function() {
         [80, 70, 90],
         [50, 60, 80]
     ]
-    let clmat = { 'keys': null, 'ginds': [[2], [0, 1, 3]], 'gltdt': [[[80, 70, 90]], [[40, 50, 60], [50, 70, 60], [50, 60, 80]]], 'gmat': [[[77.39502404588043, 70.65388036857387, 91.60517102143689]], [[36.76572825085965, 50.81184119955175, 61.992939427698765], [50.520478881706346, 69.86935352609807, 59.679283942385844], [55.318768821553576, 58.66492490577632, 76.7226056084785]]] }
+    let clmat = {
+        'keys': null,
+        'ginds': [
+            [2],
+            [0, 1, 3]
+        ],
+        'gmat': [
+            [
+                [31.31672176507748, 0.2183960452169238]
+            ],
+            [
+                [-22.27637140016484, -4.7649452046492735],
+                [-9.12778006150881, 12.303870466192656],
+                [0.08742969659617117, -7.757321306760306]
+            ]
+        ],
+        'gltdt': [
+            [
+                [80, 70, 90]
+            ],
+            [
+                [40, 50, 60],
+                [50, 70, 60],
+                [50, 60, 80]
+            ]
+        ]
+    }
 
     it(`should return '${JSON.stringify(clmat)}' when input ${JSON.stringify(mat)}, { mode, kNumber: 2, nCompNIPALS: 2 }`, async function() {
         let r = await WCluster.cluster(mat, { mode, kNumber: 2, nCompNIPALS: 2 })
@@ -25,7 +51,33 @@ describe(`cluster`, function() {
         { name: 'Paul', a: 80, b: 70, c: 90 },
         { name: 'Fawcett', a: 50, b: 60, c: 80 },
     ]
-    let clltdt = { 'keys': ['a', 'b', 'c'], 'ginds': [[2], [0, 1, 3]], 'gltdt': [[{ 'name': 'Paul', 'a': 80, 'b': 70, 'c': 90 }], [{ 'name': 'Cameron', 'a': 40, 'b': 50, 'c': 60 }, { 'name': 'Buckley', 'a': 50, 'b': 70, 'c': 60 }, { 'name': 'Fawcett', 'a': 50, 'b': 60, 'c': 80 }]], 'gmat': [[[77.39502404588043, 70.65388036857387, 91.60517102143689]], [[36.76572825085965, 50.81184119955175, 61.992939427698765], [50.520478881706346, 69.86935352609807, 59.679283942385844], [55.318768821553576, 58.66492490577632, 76.7226056084785]]] }
+    let clltdt = {
+        'keys': ['a', 'b', 'c'],
+        'ginds': [
+            [2],
+            [0, 1, 3]
+        ],
+        'gmat': [
+            [
+                [31.31672176507748, 0.2183960452169238]
+            ],
+            [
+                [-22.27637140016484, -4.7649452046492735],
+                [-9.12778006150881, 12.303870466192656],
+                [0.08742969659617117, -7.757321306760306]
+            ]
+        ],
+        'gltdt': [
+            [
+                { 'name': 'Paul', 'a': 80, 'b': 70, 'c': 90 }
+            ],
+            [
+                { 'name': 'Cameron', 'a': 40, 'b': 50, 'c': 60 },
+                { 'name': 'Buckley', 'a': 50, 'b': 70, 'c': 60 },
+                { 'name': 'Fawcett', 'a': 50, 'b': 60, 'c': 80 }
+            ]
+        ]
+    }
 
     it(`should return '${JSON.stringify(clltdt)}' when input ${JSON.stringify(ltdt)}, { mode, kNumber: 2, nCompNIPALS: 2 }`, async function() {
         let r = await WCluster.cluster(ltdt, { mode, kNumber: 2, nCompNIPALS: 2 })

package/docs/examples/ex-cluster-k-medoids.html

@@ -1,138 +0,0 @@
-<!DOCTYPE html>
-<html xmlns="http://www.w3.org/1999/xhtml" lang="zh-tw">
-
-    <head>
-        <meta http-equiv="content-type" content="text/html charset=UTF-8" />
-        <title>w-cluster cluster for k-medoids</title>
-
-        <!-- @babel/polyfill已廢棄 -->
-        <script nomodule src="https://cdn.jsdelivr.net/npm/@babel/polyfill@7.12.1/dist/polyfill.min.js"></script>
-        
-        <script src="https://cdn.jsdelivr.net/npm/wsemi/dist/wsemi.umd.js"></script>
-    
-        <script src="https://code.highcharts.com/highcharts.js"></script>
-
-        <script src="https://cdn.jsdelivr.net/npm/w-cluster@1.0.9/dist/w-cluster.umd.js"></script>
-
-        <script>
-            let 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