visualifyjs 2.5.3-2.dev → 3.0.0

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Files changed (252) hide show
  1. package/.claude/mem/TIMELINE.md +36 -0
  2. package/.claude/mem/notes/2026-02-11-3d-visualization-docs-fix-external-script-solution.md +24 -0
  3. package/.claude/mem/notes/2026-02-11-3d-visualization-docs-fix-session-summary.md +43 -0
  4. package/.claude/mem/notes/2026-02-11-cli-fix-editor-command-alias.md +26 -0
  5. package/.claude/mem/notes/2026-02-11-phase-3-developer-experience-completed.md +51 -0
  6. package/.claude/mem/notes/2026-02-11-phase-4-web-workers-implementation-complete.md +59 -0
  7. package/.claude/mem/notes/2026-02-11-visualify-phase-2-3d-visualization-complete.md +50 -0
  8. package/.claude/mem/notes/2026-02-11-visualify-phase-2-committed-ready-for-phase-3.md +33 -0
  9. package/.claude/mem/notes/2026-02-11-visualify-phase-3-complete-developer-experience.md +52 -0
  10. package/.claude/mem/notes/2026-02-11-visualify-repository-cleanup-complete.md +28 -0
  11. package/.claude/mem/notes/2026-02-18-codebase-cleanup-docsify-plugin-documentation.md +37 -0
  12. package/.claude/mem/notes/2026-02-19-css-grid-layout-fix-displaycontents-on-vcontroller.md +18 -0
  13. package/.claude/mem/notes/2026-02-19-docsify-plugin-fixes-latex-and-visualify-code-bloc.md +26 -0
  14. package/.claude/mem/notes/2026-02-19-page-mode-docs-update-decisions.md +23 -0
  15. package/.claude/mem/notes/2026-02-19-react-context-infinite-re-render-loop-fix-pattern.md +31 -0
  16. package/.claude/mem/notes/2026-02-19-version-300-bump-and-build-fixes.md +32 -0
  17. package/.claude/mem/notes/2026-02-19-visualify-build-deployment-architecture-bug-fixes.md +25 -0
  18. package/.claude/mem/notes/2026-02-19-visualify-dist-iife-self-contained-build-config.md +30 -0
  19. package/.claude/mem/notes/2026-02-19-visualify-infinite-loop-i18n-fixes.md +31 -0
  20. package/.claude/mem/notes/2026-02-19-visualify-v3-bundle-splitting-docs-restructuring.md +32 -0
  21. package/.claude/mem/notes/2026-02-20-bundle-externalization-final-architecture.md +29 -0
  22. package/.claude/mem/notes/2026-02-20-chromium-page-fix-unstable-keys-and-double-event-b.md +27 -0
  23. package/.claude/mem/notes/2026-02-20-console-cleanup-bundle-optimization-commit.md +20 -0
  24. package/.claude/mem/notes/2026-02-20-dotbio-dot-plot-fix-useeffect-dependency.md +21 -0
  25. package/.claude/mem/notes/2026-02-20-public-folder-cleanup-and-readme-rewrite.md +25 -0
  26. package/.claude/mem/notes/2026-02-20-v300-release-and-beta-channel-strategy.md +29 -0
  27. package/.claude/mem/notes/2026-02-20-visium-background-image-unknown-legend-fix.md +19 -0
  28. package/.claude/mem/notes/2026-02-20-visualify-cdn-loader-bundle-externalization.md +34 -0
  29. package/.claude/mem/sessions/session-2026-02-20-031524.md +54 -0
  30. package/.claude/settings.local.json +21 -0
  31. package/.github/workflows/static.yml.bak +51 -51
  32. package/.sisyphus/boulder.json +65 -0
  33. package/.sisyphus/plans/phase-4-advanced-optimizations.md +217 -0
  34. package/LICENSE +674 -674
  35. package/README.md +94 -59
  36. package/config-overrides.js +31 -31
  37. package/dist/stats.html +4949 -0
  38. package/dist/visualify-3d.esm.js +1 -0
  39. package/dist/visualify-3d.js +1 -0
  40. package/dist/visualify-core.esm.js +1 -0
  41. package/dist/visualify-core.js +1 -0
  42. package/dist/visualify-docs.esm.js +1 -0
  43. package/dist/visualify-docs.js +1 -0
  44. package/dist/visualify-loader.js +1 -0
  45. package/dist/visualify-pages.esm.js +1 -0
  46. package/dist/visualify-pages.js +1 -0
  47. package/dist/visualify-portal.esm.js +1 -0
  48. package/dist/visualify-portal.js +1 -0
  49. package/dist/visualify-shared.js +26571 -0
  50. package/dist/visualify.js +1 -188
  51. package/docs/CHANGELOG.md +148 -0
  52. package/docs/cli/commands.md +513 -0
  53. package/docs/configuration/visualify-json.md +474 -0
  54. package/docs/docs/3d-visualization.md +374 -0
  55. package/docs/docs/CLI.md +303 -34
  56. package/docs/docs/README.md +65 -65
  57. package/docs/docs/Rechart/bar.md +190 -190
  58. package/docs/docs/Rechart/funnel.md +241 -241
  59. package/docs/docs/Rechart/line.md +355 -355
  60. package/docs/docs/Rechart/pie.md +225 -225
  61. package/docs/docs/Rechart/radar.md +253 -253
  62. package/docs/docs/Rechart/scatter.md +298 -298
  63. package/docs/docs/_404.md +51 -51
  64. package/docs/docs/_coverpage.md +11 -11
  65. package/docs/docs/_sidebar.md +54 -44
  66. package/docs/docs/components/dotBio.md +87 -34
  67. package/docs/docs/components/echart.md +171 -82
  68. package/docs/docs/components/html.md +61 -34
  69. package/docs/docs/components/macaron.md +156 -145
  70. package/docs/docs/components/markdown.md +42 -0
  71. package/docs/docs/components/more.md +183 -142
  72. package/docs/docs/components/plotly.md +132 -62
  73. package/docs/docs/components/scatterL.md +171 -70
  74. package/docs/docs/components/visium.md +112 -57
  75. package/docs/docs/configuration.md +121 -121
  76. package/docs/docs/deploy.md +31 -31
  77. package/docs/docs/docsify-plugin.md +655 -0
  78. package/docs/docs/hmr.md +165 -0
  79. package/docs/docs/i18n.md +332 -0
  80. package/docs/docs/log.md +30 -9
  81. package/docs/docs/more-pages.md +23 -23
  82. package/docs/docs/quickstart.md +148 -124
  83. package/docs/docs/rechart-attributes.md +74 -74
  84. package/docs/docs/rechart-basic-usage.md +160 -162
  85. package/docs/docs/theme.md +5 -5
  86. package/docs/docs/typescript.md +306 -0
  87. package/docs/docs/visual-editor.md +359 -0
  88. package/docs/index.html +85 -71
  89. package/docs/manifest.json +23 -23
  90. package/docs/migration/v3-migration.md +392 -0
  91. package/docs/static/css/fluff-stuff.css +169 -169
  92. package/docs/static/css/font-awesome.min.css +4 -4
  93. package/docs/static/css/visualify.css +6 -25
  94. package/docs/static/js/3d-viz-examples.js +181 -0
  95. package/docs/static/js/configuration.js +630 -448
  96. package/docs/static/js/visualify.js +1 -188
  97. package/package.json +106 -84
  98. package/rollup.config.mjs +766 -76
  99. package/src/_css/404.css +115 -115
  100. package/src/_css/App.css +37 -37
  101. package/src/_css/autoSuggestion.css +26 -26
  102. package/src/_css/circular-progress.css +32 -32
  103. package/src/_css/index.css +36 -36
  104. package/src/_css/modern.css +350 -25
  105. package/src/_media/corner.svg +8 -8
  106. package/src/_media/download.svg +3 -3
  107. package/src/_media/logo.svg +14 -14
  108. package/src/_test/App.test.js +15 -15
  109. package/src/_utils/reportWebVitals.js +13 -13
  110. package/src/a11y/README.md +177 -0
  111. package/src/a11y/aria-labels.js +339 -0
  112. package/src/a11y/color-contrast.js +535 -0
  113. package/src/a11y/index.js +197 -0
  114. package/src/a11y/keyboard-nav.js +523 -0
  115. package/src/a11y/styles.css +165 -0
  116. package/src/cli/commands/dev.js +214 -0
  117. package/src/cli/commands/docs.js +521 -0
  118. package/src/cli/commands/edit.js +379 -0
  119. package/src/cli/commands/init.js +213 -0
  120. package/src/cli/commands/portal.js +236 -0
  121. package/src/cli/dev-server.js +530 -0
  122. package/src/cli/hmr.js +456 -0
  123. package/src/cli/index.js +180 -0
  124. package/src/cli/utils/config.js +207 -0
  125. package/src/cli/utils/logger.js +241 -0
  126. package/src/config/defaults.ts +122 -0
  127. package/src/config/index.ts +72 -0
  128. package/src/config/loader.ts +478 -0
  129. package/src/config/schema.ts +227 -0
  130. package/src/config/validator.ts +337 -0
  131. package/src/core/appContext.js +34 -27
  132. package/src/core/components/Bar.js +383 -0
  133. package/src/core/components/Bar3D.js +473 -0
  134. package/src/core/components/LargeDatasetChart.js +296 -0
  135. package/src/core/components/Line3D.js +310 -0
  136. package/src/core/components/Scatter.js +392 -188
  137. package/src/core/components/Scatter3D.js +455 -0
  138. package/src/core/components/ScatterBio.js +601 -572
  139. package/src/core/components/Surface3D.js +326 -0
  140. package/src/core/components/ThreeCustom.js +648 -0
  141. package/src/core/components/ThreeScene.js +459 -0
  142. package/src/core/components/VisiumPlot.js +191 -165
  143. package/src/core/components/browser.js +42 -42
  144. package/src/core/components/dotplot.js +413 -413
  145. package/src/core/components/html.js +29 -29
  146. package/src/core/components/list.js +178 -178
  147. package/src/core/components/macaron.js +206 -201
  148. package/src/core/components/markdown.js +56 -56
  149. package/src/core/components/parser.scatterBio.js +582 -587
  150. package/src/core/components/ratio.js +82 -80
  151. package/src/core/components/scatterL.js +206 -173
  152. package/src/core/components/searchbar.js +156 -131
  153. package/src/core/components/selection.js +310 -193
  154. package/src/core/components/timeline.js +236 -281
  155. package/src/core/components/visium.js +114 -97
  156. package/src/core/data-processor.js +413 -0
  157. package/src/core/fetch/condfetch.js +82 -82
  158. package/src/core/fetch/fetch.js +92 -92
  159. package/src/core/fetch/json.js +29 -29
  160. package/src/core/fetch/vfetch.js +42 -42
  161. package/src/core/hmr-client.js +724 -0
  162. package/src/core/liveEditor.js +44 -44
  163. package/src/core/modules/codeEditorWithPreview.js +104 -104
  164. package/src/core/modules/echarts/common.js +20 -20
  165. package/src/core/modules/echarts/gl.js +228 -0
  166. package/src/core/modules/echarts/presetHandler.js +41 -41
  167. package/src/core/modules/echarts/presets/esodev.chromium.js +172 -172
  168. package/src/core/modules/echarts/presets/esodev.codex.js +130 -130
  169. package/src/core/modules/echarts/presets/esodev.visium.js +123 -123
  170. package/src/core/modules/echarts/presets/mmtrbc.js +186 -186
  171. package/src/core/modules/echarts.js +70 -71
  172. package/src/core/modules/echartsUtils.js +43 -43
  173. package/src/core/modules/echartswitcher.js +227 -152
  174. package/src/core/modules/replotly/presetHandler.js +24 -24
  175. package/src/core/modules/replotly/presets/minimum.js +18 -18
  176. package/src/core/modules/replotly/presets/mmtrbc.dot.js +114 -114
  177. package/src/core/modules/replotly/presets/mmtrbc.violin.js +100 -100
  178. package/src/core/modules/replotly.js +74 -71
  179. package/src/core/modules/threejs/Camera.js +373 -0
  180. package/src/core/modules/threejs/Lighting.js +459 -0
  181. package/src/core/modules/threejs/Renderer.js +364 -0
  182. package/src/core/modules/threejs/Scene.js +266 -0
  183. package/src/core/modules/threejs/index.js +155 -0
  184. package/src/core/pages/404.js +50 -50
  185. package/src/core/pages/error.js +27 -27
  186. package/src/core/pages/jsonPage.js +62 -62
  187. package/src/core/pages/loading.js +44 -44
  188. package/src/core/parser/echart.data.js +204 -183
  189. package/src/core/parser/echart.features.js +125 -125
  190. package/src/core/parser/echart.general.js +147 -147
  191. package/src/core/parser/echart.hilbert.js +57 -57
  192. package/src/core/parser/echart.parser.js +210 -210
  193. package/src/core/parser/echart.series.js +67 -67
  194. package/src/core/parser/echart.types.js +76 -76
  195. package/src/core/parser/plotly.config.js +10 -10
  196. package/src/core/parser/plotly.data.js +132 -132
  197. package/src/core/parser/plotly.layout.js +9 -9
  198. package/src/core/parser/plotly.violin.js +18 -18
  199. package/src/core/recharts.js +361 -62
  200. package/src/core/router/alias.js +49 -49
  201. package/src/core/router/jsonRouter.js +31 -31
  202. package/src/core/themes/modern.js +32 -32
  203. package/src/core/themes/themeSelector.js +33 -33
  204. package/src/core/visualify.js +213 -47
  205. package/src/core/widgets/circularProgress.js +23 -23
  206. package/src/core/widgets/controller.js +116 -83
  207. package/src/core/widgets/errorBoundary.js +36 -36
  208. package/src/core/widgets/footer.js +185 -177
  209. package/src/core/widgets/header.js +238 -234
  210. package/src/core/widgets/layout/Grid.js +31 -31
  211. package/src/core/widgets/layout.js +36 -36
  212. package/src/core/widgets/mapping.js +56 -42
  213. package/src/core/workers/data-worker.js +349 -0
  214. package/src/core/workers/worker-pool.js +396 -0
  215. package/src/docsify/bundle.js +215 -0
  216. package/src/docsify/markdown.js +271 -0
  217. package/src/docsify/plugin.js +268 -0
  218. package/src/editor/README.md +172 -0
  219. package/src/editor/components/ChartBuilder.jsx +341 -0
  220. package/src/editor/components/ChartTypeSidebar.jsx +91 -0
  221. package/src/editor/components/Editor.jsx +367 -0
  222. package/src/editor/components/Preview.jsx +446 -0
  223. package/src/editor/components/PropertyPanel.jsx +468 -0
  224. package/src/editor/components/StatusBar.jsx +85 -0
  225. package/src/editor/context/EditorContext.js +248 -0
  226. package/src/editor/hooks/useDebounce.js +32 -0
  227. package/src/editor/index.js +315 -0
  228. package/src/editor/styles/editor.css +637 -0
  229. package/src/editor/utils/chartValidator.js +263 -0
  230. package/src/entries/charts3d.js +70 -0
  231. package/src/entries/core.js +78 -0
  232. package/src/entries/docs.js +154 -0
  233. package/src/entries/pages.js +93 -0
  234. package/src/entries/portal.js +204 -0
  235. package/src/entries/shared.js +50 -0
  236. package/src/i18n/formatters.js +455 -0
  237. package/src/i18n/index.js +169 -0
  238. package/src/i18n/locales/ar.json +137 -0
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  244. package/src/i18n/rtl.css +183 -0
  245. package/src/index.js +82 -62
  246. package/src/loader.js +103 -0
  247. package/src/setupTests.js +5 -5
  248. package/tsconfig.json +51 -0
  249. package/types/charts.d.ts +569 -0
  250. package/types/components.d.ts +441 -0
  251. package/types/config.d.ts +199 -0
  252. package/types/index.d.ts +353 -0
package/docs/migration/v3-migration.md ADDED
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+ # Migration Guide: Visualify.js v3.0.0
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+
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+ This guide will help you migrate from Visualify.js v2.x to v3.0.0. Version 3.0.0 introduces significant improvements including a unified CLI, configuration file support, and a cleaner command structure.
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+
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+ ## Table of Contents
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+
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+ - [Overview](#overview)
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+ - [From `@visualify/cli`](#from-visualifycli)
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+ - [From `window.$visualify`](#from-windowvisualify)
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+ - [Breaking Changes](#breaking-changes)
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+ - [Troubleshooting](#troubleshooting)
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+
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+ ---
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+
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+ ## Overview
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+
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+ ### What's Changing and Why
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+
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+ Visualify.js v3.0.0 represents a major architectural improvement focused on:
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+
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+ 1. **Unified Package**: The CLI has been merged into the core `visualifyjs` package. No more separate `@visualify/cli` installation.
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+ 2. **Configuration File**: Support for `visualify.json` configuration file instead of inline JavaScript configuration.
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+ 3. **Command Restructure**: Cleaner command namespace with `docs` and `portal` subcommands.
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+ 4. **Auto-Detection**: The `visualify dev` command now auto-detects your project type.
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+
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+ ### Timeline and Deprecation Notice
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+
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+ | Version | Status | Notes |
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+ |---------|--------|-------|
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+ | v2.x | Maintenance mode | Bug fixes only until 2026-06-01 |
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+ | v3.0.0 | Current | Active development |
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+ | v2.x | End of life | 2026-12-01 - No more updates |
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+
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+ **Important**: The `@visualify/cli` package is now deprecated and will not receive updates after 2026-06-01.
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+
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+ ### Quick Start for New Users
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+
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+ If you're starting a new project:
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+
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+ ```bash
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+ # Install the new unified package
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+ npm i -g visualifyjs
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+
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+ # Initialize a new docs project
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+ visualify init docs
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+
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+ # Or initialize a portal project
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+ visualify init portal
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+
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+ # Start development server
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+ visualify dev
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+ ```
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+
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+ ---
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+
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+ ## From `@visualify/cli`
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+
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+ ### Installation Change
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+
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+ **Before (v2.x):**
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+ ```bash
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+ npm i -g @visualify/cli
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+ ```
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+
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+ **After (v3.0.0):**
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+ ```bash
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+ npm i -g visualifyjs
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+ ```
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+
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+ ### Command Mapping
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+
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+ | Old Command | New Command | Notes |
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+ |-------------|-------------|-------|
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+ | `visualify init [path]` | `visualify init docs [path]` or `visualify init portal [path]` | Must specify template type |
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+ | `visualify serve [path]` | `visualify dev [path]` | Auto-detects mode |
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+ | `visualify start [path]` | `visualify dev portal [path]` | Explicit portal mode |
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+ | `visualify load-json <path>` | `visualify portal load-json <path>` | Now a subcommand |
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+ | `visualify mapping [options] <path>` | `visualify portal mapping [options] <path>` | Now a subcommand |
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+ | `visualify rtree2d [options] <path>` | `visualify portal rtree2d [options] <path>` | Now a subcommand |
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+
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+ ### Examples
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+
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+ #### Initializing a New Project
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+
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+ **Before:**
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+ ```bash
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+ visualify init ./my-project
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+ ```
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+
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+ **After:**
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+ ```bash
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+ # For documentation projects
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+ visualify init docs ./my-project
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+
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+ # For data portal projects
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+ visualify init portal ./my-project
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+
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+ # For both
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+ visualify init full ./my-project
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+ ```
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+
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+ #### Running Development Server
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+
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+ **Before:**
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+ ```bash
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+ # For docs
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+ visualify serve ./docs
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+
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+ # For portal
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+ visualify start ./portal
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+ ```
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+
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+ **After:**
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+ ```bash
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+ # Auto-detects mode from visualify.json or project structure
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+ visualify dev
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+
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+ # Explicit docs mode
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+ visualify dev docs
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+
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+ # Explicit portal mode
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+ visualify dev portal
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+ ```
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+
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+ #### Portal Data Commands
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+
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+ **Before:**
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+ ```bash
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+ visualify load-json ./data/points.json
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+ visualify mapping --key id ./data/mapping.csv
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+ visualify rtree2d --output ./rtree ./data/spatial.json
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+ ```
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+
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+ **After:**
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+ ```bash
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+ visualify portal load-json ./data/points.json
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+ visualify portal mapping --key id ./data/mapping.csv
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+ visualify portal rtree2d --output ./rtree ./data/spatial.json
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+ ```
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+
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+ ---
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+
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+ ## From `window.$visualify`
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+
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+ ### Configuration File Migration
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+
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+ **Before (inline HTML configuration):**
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+ ```html
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+ <!DOCTYPE html>
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+ <html>
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+ <head>
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+ <meta charset="UTF-8">
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+ <title>My Visualify Site</title>
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+ </head>
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+ <body>
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+ <div id="root"></div>
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+ <script>
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+ window.$visualify = {
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+ mode: 'pages',
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+ el: '#root',
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+ theme: 'modern',
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+ homepage: 'home.json',
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+ repo: 'https://github.com/username/repo',
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+ alias: {
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+ '/docsify': 'https://docsify.js.org/#/configuration?id=alias'
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+ }
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+ };
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+ </script>
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+ <script src="https://cdn.jsdelivr.net/npm/visualifyjs"></script>
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+ </body>
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+ </html>
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+ ```
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+
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+ **After (visualify.json configuration):**
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+ ```json
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+ {
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+ "version": "3.0.0",
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+ "mode": "portal",
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+ "el": "#root",
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+ "portal": {
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+ "homepage": "home.json",
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+ "theme": "modern",
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+ "repo": "https://github.com/username/repo",
184
+ "alias": {
185
+ "/docsify": "https://docsify.js.org/#/configuration?id=alias"
186
+ }
187
+ }
188
+ }
189
+ ```
190
+
191
+ And your `index.html` becomes simpler:
192
+ ```html
193
+ <!DOCTYPE html>
194
+ <html>
195
+ <head>
196
+ <meta charset="UTF-8">
197
+ <title>My Visualify Site</title>
198
+ </head>
199
+ <body>
200
+ <div id="root"></div>
201
+ <script src="https://cdn.jsdelivr.net/npm/visualifyjs"></script>
202
+ </body>
203
+ </html>
204
+ ```
205
+
206
+ ### Mode Changes
207
+
208
+ | Old Mode | New Mode | Notes |
209
+ |----------|----------|-------|
210
+ | `pages` | `portal` | Renamed for clarity |
211
+ | `charts` | `docs` | Renamed to reflect documentation focus |
212
+
213
+ **Before:**
214
+ ```js
215
+ window.$visualify = {
216
+ mode: 'pages', // or 'charts'
217
+ // ...
218
+ };
219
+ ```
220
+
221
+ **After:**
222
+ ```json
223
+ {
224
+ "version": "3.0.0",
225
+ "mode": "portal"
226
+ }
227
+ ```
228
+
229
+ Or for documentation mode:
230
+ ```json
231
+ {
232
+ "version": "3.0.0",
233
+ "mode": "docs"
234
+ }
235
+ ```
236
+
237
+ ### Property Mapping
238
+
239
+ | Old Property | New Location | Notes |
240
+ |--------------|--------------|-------|
241
+ | `mode` | `mode` | Now uses `"portal"` or `"docs"` |
242
+ | `el` | `el` | Unchanged |
243
+ | `theme` | `portal.theme` / `docs.theme` | Mode-specific |
244
+ | `homepage` | `portal.homepage` / `docs.homepage` | Mode-specific |
245
+ | `repo` | `portal.repo` / `docs.repo` | Mode-specific |
246
+ | `alias` | `portal.alias` / `docs.alias` | Mode-specific |
247
+
248
+ ---
249
+
250
+ ## Breaking Changes
251
+
252
+ ### Critical (Will Break Your Build)
253
+
254
+ 1. **Package Name Change**
255
+ - Old: `@visualify/cli`
256
+ - New: `visualifyjs`
257
+ - Action: Uninstall old package, install new package
258
+
259
+ 2. **Mode Values Changed**
260
+ - Old: `mode: 'pages'` or `mode: 'charts'`
261
+ - New: `mode: 'portal'` or `mode: 'docs'`
262
+ - Action: Update your configuration
263
+
264
+ 3. **Command Structure**
265
+ - Portal commands now require `portal` prefix
266
+ - Action: Update your scripts and CI/CD pipelines
267
+
268
+ ### Major (Requires Code Changes)
269
+
270
+ 1. **Configuration Location**
271
+ - Old: Inline `window.$visualify` in HTML
272
+ - New: External `visualify.json` file
273
+ - Action: Extract configuration to JSON file
274
+
275
+ 2. **Init Command Requires Template**
276
+ - Old: `visualify init [path]`
277
+ - New: `visualify init <template> [path]`
278
+ - Action: Specify `docs`, `portal`, or `full` template
279
+
280
+ 3. **Serve/Start Commands Merged**
281
+ - Old: `visualify serve` and `visualify start`
282
+ - New: `visualify dev` with auto-detection or explicit mode
283
+ - Action: Update your npm scripts
284
+
285
+ ### Minor (Behavior Changes)
286
+
287
+ 1. **Default Port**
288
+ - The development server may use different default ports
289
+ - Use `--port` flag to specify explicitly
290
+
291
+ 2. **Build Output**
292
+ - Build output structure has changed for separate entry points
293
+ - Review your deployment configuration
294
+
295
+ ---
296
+
297
+ ## Troubleshooting
298
+
299
+ ### Common Migration Issues
300
+
301
+ #### Issue: "Command not found: visualify"
302
+
303
+ **Cause**: Old package still installed or not properly linked.
304
+
305
+ **Solution**:
306
+ ```bash
307
+ # Uninstall old package
308
+ npm uninstall -g @visualify/cli
309
+
310
+ # Clear npm cache
311
+ npm cache clean --force
312
+
313
+ # Install new package
314
+ npm i -g visualifyjs
315
+
316
+ # Verify installation
317
+ visualify --version
318
+ ```
319
+
320
+ #### Issue: "Cannot find module 'visualify.json'"
321
+
322
+ **Cause**: Configuration file is missing or in wrong location.
323
+
324
+ **Solution**:
325
+ Ensure `visualify.json` exists in your project root:
326
+ ```bash
327
+ ls visualify.json
328
+
329
+ # If missing, create one
330
+ echo '{"version": "3.0.0", "mode": "portal"}' > visualify.json
331
+ ```
332
+
333
+ #### Issue: "Invalid mode: 'pages'"
334
+
335
+ **Cause**: Using old mode values.
336
+
337
+ **Solution**:
338
+ Update your `visualify.json`:
339
+ ```json
340
+ {
341
+ "version": "3.0.0",
342
+ "mode": "portal"
343
+ }
344
+ ```
345
+
346
+ #### Issue: Portal commands not working
347
+
348
+ **Cause**: Missing `portal` prefix in commands.
349
+
350
+ **Solution**:
351
+ ```bash
352
+ # Wrong
353
+ visualify load-json ./data.json
354
+
355
+ # Correct
356
+ visualify portal load-json ./data.json
357
+ ```
358
+
359
+ #### Issue: "visualify dev" not detecting mode
360
+
361
+ **Cause**: Missing or invalid `visualify.json`.
362
+
363
+ **Solution**:
364
+ 1. Create a `visualify.json` with explicit mode
365
+ 2. Or specify mode explicitly: `visualify dev portal`
366
+
367
+ ### Getting Help
368
+
369
+ - **Documentation**: [https://visualify.pharmacy.arizona.edu](https://visualify.pharmacy.arizona.edu)
370
+ - **Issues**: [GitHub Issues](https://github.com/visualify/visualify.js/issues)
371
+ - **Discussions**: [GitHub Discussions](https://github.com/visualify/visualify.js/discussions)
372
+
373
+ ### Migration Checklist
374
+
375
+ - [ ] Uninstall `@visualify/cli` package
376
+ - [ ] Install `visualifyjs` package globally
377
+ - [ ] Create `visualify.json` configuration file
378
+ - [ ] Migrate `window.$visualify` settings to `visualify.json`
379
+ - [ ] Update mode values (`pages` → `portal`, `charts` → `docs`)
380
+ - [ ] Update npm scripts with new command syntax
381
+ - [ ] Update CI/CD pipelines with new commands
382
+ - [ ] Test `visualify dev` command
383
+ - [ ] Test portal subcommands (`visualify portal *`)
384
+ - [ ] Verify build output
385
+
386
+ ---
387
+
388
+ ## Additional Resources
389
+
390
+ - [Configuration Reference](../configuration/visualify-json.md)
391
+ - [CLI Command Reference](../cli/commands.md)
392
+ - [Full Documentation](https://visualify.pharmacy.arizona.edu)