visualifyjs 2.5.3-2.dev → 2.5.3

package/package.json

@@ -1,6 +1,6 @@
 {
     "name": "visualifyjs",
-    "version": "2.5.3-2.dev",
+    "version": "2.5.3",
     "main": "dist/visualify.js",
     "homepage": "https://visualify.pharmacy.arizona.edu",
     "license": "GNU General Public License v3.0",

package/src/core/components/parser.scatterBio.js

@@ -1,7 +1,7 @@
 /*
  * @Author       : Lihao leolihao@arizona.edu
  * @Date         : 2023-11-12 17:35:02
- * @FilePath     : /visualify.js/src/core/components/parser.scatterBio.js
+ * @FilePath     : /visualifyjs/src/core/components/parser.scatterBio.js
  * @Description  :
  * Copyright (c) 2023 by Lihao (leolihao@arizona.edu), All Rights Reserved.
  */
@@ -188,7 +188,7 @@ export const handleAPI = async (config, sharedData, bbox = false) => {
 			//console.log(`result for ${item} : `, result);
 			fetched_dat[item] = result;
 		} else if (id) {
-			//console.log(`dep2 id for ${item} : `, id, dependencies);
+			//console.log(`id for ${item} : `, id, dependencies);
 
 			const result = await simplefetch(href, {
 				id: dependencies[dep] + '/' + id,
@@ -255,8 +255,6 @@ export const parseData = (fetched, config, sharedData) => {
 		throw new Error('fetched data is not valid: ' + fetched);
 	}
 
-	//console.log(`fetched: `, fetched);
-
 	const metadata = fetched.metadata;
 	const genes = fetched.gene;
 
@@ -294,7 +292,7 @@ export const parseData = (fetched, config, sharedData) => {
 				config?.mapping?.axis,
 			),
 			legend: handleLegend(category),
-			visualMap: handleVisualMap(genes, config.visualmap),
+			visualMap: handleVisualMap(genes),
 			title: fetched?.fetched_ID?.gene ?? '',
 		};
 	} catch (error) {
@@ -543,13 +541,9 @@ const handleLegend = (category) => {
 	return legend;
 };
 
-const handleVisualMap = (genes, visualmap = {}) => {
+const handleVisualMap = (genes) => {
 	if (!genes) return [];
 	// Initialize max and min variables with the first value in the object
-
-	console.log(`visualmap in handleVisualMap: `, visualmap);
-
-
 	let maxValue = Number.NEGATIVE_INFINITY;
 	let minValue = Number.POSITIVE_INFINITY;
 	let visualMap = {};
@@ -580,8 +574,6 @@ const handleVisualMap = (genes, visualmap = {}) => {
 		writingMode: 'vertical-lr',
 	};
 
-	visualMap = { ...visualMap, ...visualmap };
-
 	//console.log(`handlesVisualMap: `, visualMap);
 	return visualMap;
 };

package/src/core/components/scatterL.js

@@ -1,7 +1,7 @@
 /*
  * @Author       : Lihao leolihao@arizona.edu
  * @Date         : 2023-11-06 17:23:59
- * @FilePath     : /visualify.js/src/core/components/scatterL.js
+ * @FilePath     : /visualifyjs/src/core/components/scatterL.js
  * @Description  :
  * Copyright (c) 2023 by Lihao (leolihao@arizona.edu), All Rights Reserved.
  */
@@ -32,7 +32,7 @@ function ScatterBio({ props, style }) {
 
 	useEffect(() => {
 		let option = parseConfig(props);
-		//console.log('option: ', option);
+		console.log('option: ', option);
 		let fetched_dat = null;
 
 		// Check if the sharedData has changed
@@ -68,7 +68,7 @@ function ScatterBio({ props, style }) {
 						sharedData,
 						ibox,
 					);
-					//console.log(fetched_dat, 'fetched_dat');
+					console.log(fetched_dat, 'fetched_dat');
 				}
 				var { series, legend, visualMap, title } = parseData(
 					fetched_dat,

package/src/core/modules/echartswitcher.js

@@ -1,7 +1,7 @@
 /*
  * @Author       : Lihao leolihao@arizona.edu
  * @Date         : 2023-12-01 14:21:40
- * @FilePath     : /visualify.js/src/core/modules/echartswitcher.js
+ * @FilePath     : /visualifyjs/src/core/modules/echartswitcher.js
  * @Description  :
  * Copyright (c) 2023 by Lihao (leolihao@arizona.edu), All Rights Reserved.
  */

package/src/core/parser/echart.general.js

@@ -1,7 +1,7 @@
 /*
  * @Author       : Lihao leolihao@arizona.edu
  * @Date         : 2023-12-02 11:56:41
- * @FilePath     : /visualify.js/src/core/parser/echart.general.js
+ * @FilePath     : /visualifyjs/src/core/parser/echart.general.js
  * @Description  :
  *
  * Copyright (c) 2023 by Lihao (leolihao@arizona.edu), All Rights Reserved.
@@ -33,14 +33,11 @@ const _parser_gereral = (options = {}, preset = {}) => {
 
 	if ('xAxis' in options) {
 		if (options.xAxis === false) parsedOptions.xAxis = { show: false };
-		else if (Array.isArray(options.xAxis)) {
+		else if (options.xAxis)
 			parsedOptions.xAxis = {
 				...parsedOptions?.xAxis,
 				data: options.xAxis,
 			};
-		} else {
-			parsedOptions.xAxis = options.xAxis;
-		}
 	}
 
 	if ('yAxis' in options) {
@@ -50,7 +47,6 @@ const _parser_gereral = (options = {}, preset = {}) => {
 				...parsedOptions?.yAxis,
 				data: options.yAxis,
 			};
-		else parsedOptions.yAxis = options.yAxis;
 	}
 
 	if ('xAxisLabel' in options) {