vet-data-utils-ts 0.4.11 → 0.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +19 -7
- package/dist/clinical-terminology.d.ts +40 -0
- package/dist/clinical-terminology.js +42 -16
- package/dist/index.d.ts +1 -0
- package/dist/index.js +1 -0
- package/dist/research-study.d.ts +113 -0
- package/dist/research-study.js +401 -0
- package/package.json +5 -1
package/README.md
CHANGED
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@@ -8,22 +8,34 @@ Current surfaces cover the canonical animal-card DID, veterinary summary
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sections, animal-only emergency data, pseudonymous DigitalTwin search input and
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veterinary assistant intents.
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FHIR R5 ResearchStudy screens consume the exact 25 resource-specific search
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parameters and the separate associated-party projection from
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`vet-data-utils-ts/research-study`. The complete `associatedParty` object stays
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beside each flat projection so repeating roles, periods and classifiers cannot
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be attributed to the wrong party. A party classifier describes an organization
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category; it never represents Consent or CRUDS authorization. See
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[`docs/research-study-r5-contract.md`](docs/research-study-r5-contract.md).
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Reusable Communication screens receive immutable workflow presets from
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`vet-data-utils-ts/communication`. The research-agreement screen is fixed to
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FHIR `notification` plus HL7 v3 ActReason `HRESCH` and does not expose a topic
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picker. See [`docs/communication-inbox-filters.md`](docs/communication-inbox-filters.md).
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Veterinary clinical entry screens obtain
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`vet-data-utils-ts/clinical-terminology
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-
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Veterinary clinical entry screens obtain browser-safe source identifiers and
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response types from `vet-data-utils-ts/clinical-terminology`; the terminology
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server remains authoritative for each FHIR field. Observations and diagnostic
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reports use LOINC and conditions additionally support ICD-10. SNOMED GPS is
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globally available, while full SNOMED CT and the veterinary extension are
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offered only when the selected ISO country is an official member territory.
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These sources share one FHIR system URI, so portals must preserve the source
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scope returned by the server rather than authorizing from the URI. A returned candidate is never accepted
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automatically: the professional must review and select it before creating the
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FHIR resource. Membership does not replace national edition, attribution or
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affiliate-license requirements. See the [official member list](https://www.snomed.org/members).
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Veterinary immunizations use the distinct WHO ATCvet classification (group QI
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for immunologicals)
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-
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for immunologicals); ordinary human ATC is not substituted for it. Veterinary
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allergy product coding may also use ATCvet, while manifestations use an allowed
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SNOMED source.
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The deferred spreadsheet shape for member and employee role assignments is
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documented in [`docs/member-import-contract.md`](docs/member-import-contract.md).
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@@ -5,6 +5,44 @@ export declare const VeterinaryClinicalTerminologySystems: Readonly<{
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/** WHO Collaborating Centre ATCvet classification, distinct from human ATC. */
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readonly AtcVet: "http://www.whocc.no/atcvet";
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}>;
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/**
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* Source scopes are authorization/content boundaries, not Coding.system URIs.
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* GPS, full SNOMED CT and the veterinary extension intentionally share the
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* canonical SNOMED system URI.
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* https://www.snomed.org/gps
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*/
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export declare const VeterinaryTerminologySourceScopes: Readonly<{
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readonly Loinc: "LNC";
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readonly SnomedGps: "SNOMED_GPS";
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readonly SnomedCt: "SNOMED_CT";
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readonly SnomedVeterinary: "SNOMEDCT_VET";
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readonly Icd10: "ICD10";
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readonly AtcVet: "ATCVET";
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}>;
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export type VeterinaryTerminologySourceScope = typeof VeterinaryTerminologySourceScopes[keyof typeof VeterinaryTerminologySourceScopes];
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export type VeterinaryTerminologyCapability = Readonly<{
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type: 'terminology-capability';
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id: string;
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attributes: Readonly<{
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fhirVersion: 'R4';
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sector: string;
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jurisdiction: string;
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resourceType: VeterinaryCodedResourceType;
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elementPath: string;
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flatClaims?: Readonly<{
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code: string;
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text: string;
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display: string;
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}>;
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defaultSource: VeterinaryTerminologySourceScope;
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sources: readonly Readonly<{
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id: VeterinaryTerminologySourceScope;
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system: string;
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availability: 'hosted' | 'catalog';
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globallyUsable: boolean;
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}>[];
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}>;
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}>;
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/**
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* ISO 3166-1 alpha-2 territories enumerated by the official SNOMED
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* International member page on 2026-09-05.
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*/
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export declare const SnomedMemberCountryCodes: readonly ["AR", "BZ", "CA", "CL", "CR", "SV", "JM", "US", "UY", "AD", "AT", "BE", "HR", "CY", "CZ", "DK", "EE", "FI", "FR", "DE", "HU", "IS", "IE", "IL", "JO", "LV", "LT", "LU", "MT", "NL", "NO", "PT", "QA", "SI", "SA", "SK", "ZA", "ES", "SE", "CH", "AE", "GB", "AU", "BN", "HK", "IN", "ID", "MY", "MN", "NZ", "KR", "SG", "TH", "UZ"];
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export type VeterinaryCodedResourceType = 'Condition' | 'Procedure' | 'DiagnosticReport' | 'Observation' | 'AllergyIntolerance' | 'Immunization';
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/** Resource-level summary; field-level authority comes from the terminology API capability response. */
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export declare function veterinaryTerminologySourcesFor(resourceType: VeterinaryCodedResourceType, countryCode: string): readonly VeterinaryTerminologySourceScope[];
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export declare function veterinaryTerminologySystemsFor(resourceType: VeterinaryCodedResourceType, countryCode: string): readonly string[];
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@@ -5,6 +5,20 @@ export const VeterinaryClinicalTerminologySystems = Object.freeze({
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/** WHO Collaborating Centre ATCvet classification, distinct from human ATC. */
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AtcVet: 'http://www.whocc.no/atcvet',
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});
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/**
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* Source scopes are authorization/content boundaries, not Coding.system URIs.
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* GPS, full SNOMED CT and the veterinary extension intentionally share the
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* canonical SNOMED system URI.
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* https://www.snomed.org/gps
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*/
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export const VeterinaryTerminologySourceScopes = Object.freeze({
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Loinc: 'LNC',
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SnomedGps: 'SNOMED_GPS',
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SnomedCt: 'SNOMED_CT',
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SnomedVeterinary: 'SNOMEDCT_VET',
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Icd10: 'ICD10',
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AtcVet: 'ATCVET',
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});
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/**
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* ISO 3166-1 alpha-2 territories enumerated by the official SNOMED
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* International member page on 2026-09-05.
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'SI', 'SA', 'SK', 'ZA', 'ES', 'SE', 'CH', 'AE', 'GB',
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'AU', 'BN', 'HK', 'IN', 'ID', 'MY', 'MN', 'NZ', 'KR', 'SG', 'TH', 'UZ',
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]);
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/** Resource-level summary; field-level authority comes from the terminology API capability response. */
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export function veterinaryTerminologySourcesFor(resourceType, countryCode) {
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if (resourceType === 'Observation' || resourceType === 'DiagnosticReport') {
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return [
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return [VeterinaryTerminologySourceScopes.Loinc];
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}
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const permitsSnomed = SnomedMemberCountryCodes.includes(countryCode.toUpperCase());
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return
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const clinical = permitsSnomed
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? [
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VeterinaryTerminologySourceScopes.SnomedGps,
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VeterinaryTerminologySourceScopes.SnomedCt,
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VeterinaryTerminologySourceScopes.SnomedVeterinary,
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]
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: [VeterinaryTerminologySourceScopes.SnomedGps];
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if (resourceType === 'Condition')
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return [...clinical, VeterinaryTerminologySourceScopes.Icd10];
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if (resourceType === 'Immunization')
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return [VeterinaryTerminologySourceScopes.AtcVet, ...clinical];
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if (resourceType === 'AllergyIntolerance')
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return [...clinical, VeterinaryTerminologySourceScopes.AtcVet];
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return clinical;
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}
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export function veterinaryTerminologySystemsFor(resourceType, countryCode) {
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const sourceSystem = {
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[VeterinaryTerminologySourceScopes.Loinc]: VeterinaryClinicalTerminologySystems.Loinc,
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[VeterinaryTerminologySourceScopes.SnomedGps]: VeterinaryClinicalTerminologySystems.SnomedCt,
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[VeterinaryTerminologySourceScopes.SnomedCt]: VeterinaryClinicalTerminologySystems.SnomedCt,
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[VeterinaryTerminologySourceScopes.SnomedVeterinary]: VeterinaryClinicalTerminologySystems.SnomedCt,
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[VeterinaryTerminologySourceScopes.Icd10]: VeterinaryClinicalTerminologySystems.Icd10,
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[VeterinaryTerminologySourceScopes.AtcVet]: VeterinaryClinicalTerminologySystems.AtcVet,
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};
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return [...new Set(veterinaryTerminologySourcesFor(resourceType, countryCode).map((source) => sourceSystem[source]))];
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}
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package/dist/index.d.ts
CHANGED
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export * from './financial.js';
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export * from './iso-jurisdictions.js';
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export * from './organization-application.js';
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export * from './research-study.js';
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export * from './sectors.js';
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export * from './veterinary-sections.js';
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package/dist/index.js
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export * from './financial.js';
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export * from './iso-jurisdictions.js';
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export * from './organization-application.js';
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export * from './research-study.js';
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export * from './sectors.js';
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export * from './veterinary-sections.js';
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@@ -0,0 +1,113 @@
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/**
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* Browser-safe FHIR R5 ResearchStudy flat-claim contract.
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*
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* The standard catalogue is copied from the R5 SearchParameter definitions,
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* not inferred from similarly named resource elements. In particular, the
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* `date` SearchParameter targets `ResearchStudy.period`, not the publication
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* date element. Associated-party projections are indexed separately because
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* base R5 defines no ResearchStudy party SearchParameter.
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*
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* @see https://hl7.org/fhir/R5/researchstudy.html
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* @see https://hl7.org/fhir/R5/researchstudy-search.html
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*/
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export declare const ResearchStudyR5Version: "5.0.0";
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/**
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* Immutable codes defined by the FHIR R5 5.0.0 ResearchStudy party-role code
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* system. The element binding remains extensible; this catalogue is the closed
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* set a portal may offer by default, not a validator for every conformant
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* external Coding.
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*
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* @see https://hl7.org/fhir/R5/codesystem-research-study-party-role.html
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*/
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export declare const ResearchStudyR5PartyRoleSystem: "http://hl7.org/fhir/research-study-party-role";
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export declare const ResearchStudyR5PartyRoleCodes: readonly ["sponsor", "lead-sponsor", "sponsor-investigator", "primary-investigator", "collaborator", "funding-source", "general-contact", "recruitment-contact", "sub-investigator", "study-director", "study-chair", "irb"];
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export type ResearchStudyR5PartyRoleCode = (typeof ResearchStudyR5PartyRoleCodes)[number];
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export declare const ResearchStudyAssociatedPartyBindings: Readonly<{
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readonly role: Readonly<{
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valueSet: "http://hl7.org/fhir/ValueSet/research-study-party-role";
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strength: "extensible";
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}>;
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readonly classifier: Readonly<{
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valueSet: "http://hl7.org/fhir/ValueSet/research-study-party-organization-type";
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strength: "example";
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}>;
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}>;
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export type ResearchStudySearchParameterType = 'composite' | 'date' | 'number' | 'reference' | 'string' | 'token';
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export type ResearchStudyR5SearchParameter = Readonly<{
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code: string;
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type: ResearchStudySearchParameterType;
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expression: string;
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components: readonly string[];
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}>;
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/** Exact resource-specific SearchParameters published by FHIR R5 5.0.0. */
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export declare const ResearchStudyR5SearchParameterCatalog: readonly ResearchStudyR5SearchParameter[];
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declare const standardSearchClaims: readonly `ResearchStudy.${string}`[];
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declare const associatedPartyClaims: readonly ["ResearchStudy.associated-party-name", "ResearchStudy.associated-party-role", "ResearchStudy.associated-party-period-start", "ResearchStudy.associated-party-period-end", "ResearchStudy.associated-party-classifier", "ResearchStudy.associated-party-party"];
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/**
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* Governed flat claims for ResearchStudy.
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*
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* `standardSearch` contains only official R5 SearchParameters. The
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* `associatedParty` list is an explicit operational projection of the R5
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* backbone element; none of those names is advertised as a standard search
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* parameter and `classifier` never carries CRUD or authorization policy.
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*/
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export declare const ResearchStudyFlatClaimCatalog: Readonly<{
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standardSearch: readonly `ResearchStudy.${string}`[];
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associatedParty: readonly ["ResearchStudy.associated-party-name", "ResearchStudy.associated-party-role", "ResearchStudy.associated-party-period-start", "ResearchStudy.associated-party-period-end", "ResearchStudy.associated-party-classifier", "ResearchStudy.associated-party-party"];
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all: readonly `ResearchStudy.${string}`[];
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}>;
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export type ResearchStudyCoding = Readonly<{
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system?: string;
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code?: string;
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display?: string;
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}>;
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export type ResearchStudyCodeableConcept = Readonly<{
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coding?: readonly ResearchStudyCoding[];
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text?: string;
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}>;
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export type ResearchStudyPeriod = Readonly<{
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start?: string;
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end?: string;
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}>;
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export type ResearchStudyAssociatedPartyReferenceType = 'Organization' | 'Practitioner' | 'PractitionerRole';
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export type ResearchStudyAssociatedPartyReference = Readonly<{
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reference: string;
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type?: ResearchStudyAssociatedPartyReferenceType;
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display?: string;
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}>;
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export type ResearchStudyAssociatedParty = Readonly<{
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name?: string;
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role: ResearchStudyCodeableConcept;
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period?: readonly ResearchStudyPeriod[];
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classifier?: readonly ResearchStudyCodeableConcept[];
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party?: ResearchStudyAssociatedPartyReference;
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}>;
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export type ResearchStudyAssociatedPartyClaimProjection = Readonly<{
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/** The complete party is retained beside its derived claims to preserve correlation. */
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associatedParty: ResearchStudyAssociatedParty;
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claims: Readonly<Record<(typeof associatedPartyClaims)[number], readonly string[]>>;
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}>;
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export type ResearchStudyR5SearchClaim = (typeof standardSearchClaims)[number];
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export type ResearchStudyR5SearchClaims = Readonly<Partial<Record<ResearchStudyR5SearchClaim, readonly string[]>>>;
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/**
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* Projects the official resource-specific R5 SearchParameters from one native
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* ResearchStudy into flat `resource.meta.claims`. Composite values use FHIR's
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* `$` component separator; associatedParty remains a separate projection and
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* never becomes authorization data.
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*
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* @see https://hl7.org/fhir/R5/researchstudy-search.html
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*/
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export declare function projectResearchStudyR5SearchClaims(input: unknown): ResearchStudyR5SearchClaims;
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/**
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* Normalizes the R5 `associatedParty[]` backbone without flattening parties
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* into unrelated parallel arrays. This function validates data shape only; it
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* does not grant study access or interpret classifier values as permissions.
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*/
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export declare function normalizeResearchStudyAssociatedParties(input: unknown): readonly ResearchStudyAssociatedParty[];
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/**
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* Produces one flat-claim map per associated party. Keeping the normalized
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* party beside each map preserves the party/role/period/classifier boundary
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* required when a later Bundle PATCH changes one party.
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*/
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export declare function projectResearchStudyAssociatedPartyClaims(input: unknown): readonly ResearchStudyAssociatedPartyClaimProjection[];
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export {};
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@@ -0,0 +1,401 @@
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1
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/**
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2
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* Browser-safe FHIR R5 ResearchStudy flat-claim contract.
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3
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+
*
|
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4
|
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* The standard catalogue is copied from the R5 SearchParameter definitions,
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5
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* not inferred from similarly named resource elements. In particular, the
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6
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* `date` SearchParameter targets `ResearchStudy.period`, not the publication
|
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7
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* date element. Associated-party projections are indexed separately because
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8
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* base R5 defines no ResearchStudy party SearchParameter.
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*
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* @see https://hl7.org/fhir/R5/researchstudy.html
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* @see https://hl7.org/fhir/R5/researchstudy-search.html
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*/
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export const ResearchStudyR5Version = '5.0.0';
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/**
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* Immutable codes defined by the FHIR R5 5.0.0 ResearchStudy party-role code
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* system. The element binding remains extensible; this catalogue is the closed
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* set a portal may offer by default, not a validator for every conformant
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* external Coding.
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*
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* @see https://hl7.org/fhir/R5/codesystem-research-study-party-role.html
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*/
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export const ResearchStudyR5PartyRoleSystem = 'http://hl7.org/fhir/research-study-party-role';
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export const ResearchStudyR5PartyRoleCodes = Object.freeze([
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'sponsor',
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'lead-sponsor',
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'sponsor-investigator',
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'primary-investigator',
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'collaborator',
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'funding-source',
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'general-contact',
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'recruitment-contact',
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'sub-investigator',
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'study-director',
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'study-chair',
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'irb',
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]);
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export const ResearchStudyAssociatedPartyBindings = Object.freeze({
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role: Object.freeze({
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valueSet: 'http://hl7.org/fhir/ValueSet/research-study-party-role',
|
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strength: 'extensible',
|
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+
}),
|
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|
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classifier: Object.freeze({
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valueSet: 'http://hl7.org/fhir/ValueSet/research-study-party-organization-type',
|
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|
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strength: 'example',
|
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|
+
}),
|
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|
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});
|
|
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|
+
const searchParameter = (code, type, expression, components = []) => Object.freeze({
|
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|
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code,
|
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type,
|
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expression,
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51
|
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components: Object.freeze([...components]),
|
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|
+
});
|
|
53
|
+
/** Exact resource-specific SearchParameters published by FHIR R5 5.0.0. */
|
|
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|
+
export const ResearchStudyR5SearchParameterCatalog = Object.freeze([
|
|
55
|
+
searchParameter('classifier', 'token', 'ResearchStudy.classifier'),
|
|
56
|
+
searchParameter('condition', 'token', 'ResearchStudy.condition'),
|
|
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|
+
searchParameter('date', 'date', 'ResearchStudy.period'),
|
|
58
|
+
searchParameter('description', 'string', 'ResearchStudy.description'),
|
|
59
|
+
searchParameter('eligibility', 'reference', 'ResearchStudy.recruitment.eligibility'),
|
|
60
|
+
searchParameter('focus-code', 'token', 'ResearchStudy.focus.concept'),
|
|
61
|
+
searchParameter('focus-reference', 'reference', 'ResearchStudy.focus.reference'),
|
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62
|
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searchParameter('identifier', 'token', 'ResearchStudy.identifier'),
|
|
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|
+
searchParameter('keyword', 'token', 'ResearchStudy.keyword'),
|
|
64
|
+
searchParameter('name', 'string', 'ResearchStudy.name'),
|
|
65
|
+
searchParameter('objective-description', 'string', 'ResearchStudy.objective.description'),
|
|
66
|
+
searchParameter('objective-type', 'token', 'ResearchStudy.objective.type'),
|
|
67
|
+
searchParameter('part-of', 'reference', 'ResearchStudy.partOf'),
|
|
68
|
+
searchParameter('phase', 'token', 'ResearchStudy.phase'),
|
|
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|
+
searchParameter('progress-status-state-actual', 'composite', 'ResearchStudy.progressStatus', [
|
|
70
|
+
'http://hl7.org/fhir/SearchParameter/ResearchStudy-state',
|
|
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|
+
'http://hl7.org/fhir/SearchParameter/ResearchStudy-actual',
|
|
72
|
+
]),
|
|
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|
+
searchParameter('progress-status-state-period', 'composite', 'ResearchStudy.progressStatus', [
|
|
74
|
+
'http://hl7.org/fhir/SearchParameter/ResearchStudy-state',
|
|
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|
+
'http://hl7.org/fhir/SearchParameter/ResearchStudy-period',
|
|
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|
+
]),
|
|
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|
+
searchParameter('progress-status-state-period-actual', 'composite', 'ResearchStudy.progressStatus', [
|
|
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|
+
'http://hl7.org/fhir/SearchParameter/ResearchStudy-state',
|
|
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|
+
'http://hl7.org/fhir/SearchParameter/ResearchStudy-period',
|
|
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|
+
'http://hl7.org/fhir/SearchParameter/ResearchStudy-actual',
|
|
81
|
+
]),
|
|
82
|
+
searchParameter('protocol', 'reference', 'ResearchStudy.protocol'),
|
|
83
|
+
searchParameter('recruitment-actual', 'number', 'ResearchStudy.recruitment.actualNumber'),
|
|
84
|
+
searchParameter('recruitment-target', 'number', 'ResearchStudy.recruitment.targetNumber'),
|
|
85
|
+
searchParameter('region', 'token', 'ResearchStudy.region'),
|
|
86
|
+
searchParameter('site', 'reference', 'ResearchStudy.site'),
|
|
87
|
+
searchParameter('status', 'token', 'ResearchStudy.status'),
|
|
88
|
+
searchParameter('study-design', 'token', 'ResearchStudy.studyDesign'),
|
|
89
|
+
searchParameter('title', 'string', 'ResearchStudy.title'),
|
|
90
|
+
]);
|
|
91
|
+
const standardSearchClaims = Object.freeze(ResearchStudyR5SearchParameterCatalog.map(parameter => `ResearchStudy.${parameter.code}`));
|
|
92
|
+
const associatedPartyClaims = Object.freeze([
|
|
93
|
+
'ResearchStudy.associated-party-name',
|
|
94
|
+
'ResearchStudy.associated-party-role',
|
|
95
|
+
'ResearchStudy.associated-party-period-start',
|
|
96
|
+
'ResearchStudy.associated-party-period-end',
|
|
97
|
+
'ResearchStudy.associated-party-classifier',
|
|
98
|
+
'ResearchStudy.associated-party-party',
|
|
99
|
+
]);
|
|
100
|
+
/**
|
|
101
|
+
* Governed flat claims for ResearchStudy.
|
|
102
|
+
*
|
|
103
|
+
* `standardSearch` contains only official R5 SearchParameters. The
|
|
104
|
+
* `associatedParty` list is an explicit operational projection of the R5
|
|
105
|
+
* backbone element; none of those names is advertised as a standard search
|
|
106
|
+
* parameter and `classifier` never carries CRUD or authorization policy.
|
|
107
|
+
*/
|
|
108
|
+
export const ResearchStudyFlatClaimCatalog = Object.freeze({
|
|
109
|
+
standardSearch: standardSearchClaims,
|
|
110
|
+
associatedParty: associatedPartyClaims,
|
|
111
|
+
all: Object.freeze([...standardSearchClaims, ...associatedPartyClaims]),
|
|
112
|
+
});
|
|
113
|
+
/**
|
|
114
|
+
* Projects the official resource-specific R5 SearchParameters from one native
|
|
115
|
+
* ResearchStudy into flat `resource.meta.claims`. Composite values use FHIR's
|
|
116
|
+
* `$` component separator; associatedParty remains a separate projection and
|
|
117
|
+
* never becomes authorization data.
|
|
118
|
+
*
|
|
119
|
+
* @see https://hl7.org/fhir/R5/researchstudy-search.html
|
|
120
|
+
*/
|
|
121
|
+
export function projectResearchStudyR5SearchClaims(input) {
|
|
122
|
+
if (!isRecord(input) || input.resourceType !== 'ResearchStudy') {
|
|
123
|
+
throw new TypeError('research_study_resource_invalid');
|
|
124
|
+
}
|
|
125
|
+
const claims = {};
|
|
126
|
+
addClaim(claims, 'ResearchStudy.classifier', conceptsValue(input.classifier, 'research_study_classifier_invalid'));
|
|
127
|
+
addClaim(claims, 'ResearchStudy.condition', conceptsValue(input.condition, 'research_study_condition_invalid'));
|
|
128
|
+
addClaim(claims, 'ResearchStudy.date', periodValues(input.period, 'research_study_period_invalid'));
|
|
129
|
+
addClaim(claims, 'ResearchStudy.description', strings(input.description));
|
|
130
|
+
addClaim(claims, 'ResearchStudy.eligibility', references(input.recruitment, 'eligibility'));
|
|
131
|
+
addClaim(claims, 'ResearchStudy.focus-code', codeableReferences(input.focus, 'concept'));
|
|
132
|
+
addClaim(claims, 'ResearchStudy.focus-reference', codeableReferences(input.focus, 'reference'));
|
|
133
|
+
addClaim(claims, 'ResearchStudy.identifier', identifiers(input.identifier));
|
|
134
|
+
addClaim(claims, 'ResearchStudy.keyword', conceptsValue(input.keyword, 'research_study_keyword_invalid'));
|
|
135
|
+
addClaim(claims, 'ResearchStudy.name', strings(input.name));
|
|
136
|
+
addClaim(claims, 'ResearchStudy.objective-description', backboneStrings(input.objective, 'description'));
|
|
137
|
+
addClaim(claims, 'ResearchStudy.objective-type', backboneConcepts(input.objective, 'type'));
|
|
138
|
+
addClaim(claims, 'ResearchStudy.part-of', references(input.partOf));
|
|
139
|
+
addClaim(claims, 'ResearchStudy.phase', conceptsValue(input.phase, 'research_study_phase_invalid'));
|
|
140
|
+
const progress = progressStatusValues(input.progressStatus);
|
|
141
|
+
addClaim(claims, 'ResearchStudy.progress-status-state-actual', progress.stateActual);
|
|
142
|
+
addClaim(claims, 'ResearchStudy.progress-status-state-period', progress.statePeriod);
|
|
143
|
+
addClaim(claims, 'ResearchStudy.progress-status-state-period-actual', progress.statePeriodActual);
|
|
144
|
+
addClaim(claims, 'ResearchStudy.protocol', references(input.protocol));
|
|
145
|
+
addClaim(claims, 'ResearchStudy.recruitment-actual', nestedNumber(input.recruitment, 'actualNumber'));
|
|
146
|
+
addClaim(claims, 'ResearchStudy.recruitment-target', nestedNumber(input.recruitment, 'targetNumber'));
|
|
147
|
+
addClaim(claims, 'ResearchStudy.region', conceptsValue(input.region, 'research_study_region_invalid'));
|
|
148
|
+
addClaim(claims, 'ResearchStudy.site', references(input.site));
|
|
149
|
+
addClaim(claims, 'ResearchStudy.status', strings(input.status));
|
|
150
|
+
addClaim(claims, 'ResearchStudy.study-design', conceptsValue(input.studyDesign, 'research_study_design_invalid'));
|
|
151
|
+
addClaim(claims, 'ResearchStudy.title', strings(input.title));
|
|
152
|
+
return Object.freeze(claims);
|
|
153
|
+
}
|
|
154
|
+
/**
|
|
155
|
+
* Normalizes the R5 `associatedParty[]` backbone without flattening parties
|
|
156
|
+
* into unrelated parallel arrays. This function validates data shape only; it
|
|
157
|
+
* does not grant study access or interpret classifier values as permissions.
|
|
158
|
+
*/
|
|
159
|
+
export function normalizeResearchStudyAssociatedParties(input) {
|
|
160
|
+
if (!Array.isArray(input))
|
|
161
|
+
throw new TypeError('research_study_associated_parties_invalid');
|
|
162
|
+
return Object.freeze(input.map((value, index) => normalizeAssociatedParty(value, index)));
|
|
163
|
+
}
|
|
164
|
+
/**
|
|
165
|
+
* Produces one flat-claim map per associated party. Keeping the normalized
|
|
166
|
+
* party beside each map preserves the party/role/period/classifier boundary
|
|
167
|
+
* required when a later Bundle PATCH changes one party.
|
|
168
|
+
*/
|
|
169
|
+
export function projectResearchStudyAssociatedPartyClaims(input) {
|
|
170
|
+
const parties = normalizeResearchStudyAssociatedParties(input);
|
|
171
|
+
return Object.freeze(parties.map(party => Object.freeze({
|
|
172
|
+
associatedParty: party,
|
|
173
|
+
claims: Object.freeze({
|
|
174
|
+
'ResearchStudy.associated-party-name': Object.freeze(party.name ? [party.name] : []),
|
|
175
|
+
'ResearchStudy.associated-party-role': Object.freeze(conceptValues([party.role])),
|
|
176
|
+
'ResearchStudy.associated-party-period-start': Object.freeze((party.period || []).flatMap(period => period.start ? [period.start] : [])),
|
|
177
|
+
'ResearchStudy.associated-party-period-end': Object.freeze((party.period || []).flatMap(period => period.end ? [period.end] : [])),
|
|
178
|
+
'ResearchStudy.associated-party-classifier': Object.freeze(conceptValues(party.classifier || [])),
|
|
179
|
+
'ResearchStudy.associated-party-party': Object.freeze(party.party ? [party.party.reference] : []),
|
|
180
|
+
}),
|
|
181
|
+
})));
|
|
182
|
+
}
|
|
183
|
+
function normalizeAssociatedParty(value, index) {
|
|
184
|
+
if (!isRecord(value))
|
|
185
|
+
throw new TypeError(`research_study_associated_party_${index}_invalid`);
|
|
186
|
+
const role = normalizeConcept(value.role, `research_study_associated_party_${index}_role_required`);
|
|
187
|
+
const name = optionalString(value.name);
|
|
188
|
+
const period = value.period === undefined
|
|
189
|
+
? undefined
|
|
190
|
+
: normalizePeriods(value.period, index);
|
|
191
|
+
const classifier = value.classifier === undefined
|
|
192
|
+
? undefined
|
|
193
|
+
: normalizeConcepts(value.classifier, `research_study_associated_party_${index}_classifier_invalid`);
|
|
194
|
+
const party = value.party === undefined ? undefined : normalizePartyReference(value.party, index);
|
|
195
|
+
return Object.freeze({
|
|
196
|
+
...(name ? { name } : {}),
|
|
197
|
+
role,
|
|
198
|
+
...(period ? { period } : {}),
|
|
199
|
+
...(classifier ? { classifier } : {}),
|
|
200
|
+
...(party ? { party } : {}),
|
|
201
|
+
});
|
|
202
|
+
}
|
|
203
|
+
function normalizeConcepts(value, error) {
|
|
204
|
+
if (!Array.isArray(value))
|
|
205
|
+
throw new TypeError(error);
|
|
206
|
+
return Object.freeze(value.map(item => normalizeConcept(item, error)));
|
|
207
|
+
}
|
|
208
|
+
function normalizeConcept(value, error) {
|
|
209
|
+
if (!isRecord(value))
|
|
210
|
+
throw new TypeError(error);
|
|
211
|
+
const text = optionalString(value.text);
|
|
212
|
+
let coding;
|
|
213
|
+
if (value.coding !== undefined) {
|
|
214
|
+
if (!Array.isArray(value.coding))
|
|
215
|
+
throw new TypeError(error);
|
|
216
|
+
coding = Object.freeze(value.coding.map(item => normalizeCoding(item, error)));
|
|
217
|
+
}
|
|
218
|
+
if (!text && (!coding || coding.length === 0 || !coding.some(item => item.code)))
|
|
219
|
+
throw new TypeError(error);
|
|
220
|
+
return Object.freeze({ ...(coding ? { coding } : {}), ...(text ? { text } : {}) });
|
|
221
|
+
}
|
|
222
|
+
function normalizeCoding(value, error) {
|
|
223
|
+
if (!isRecord(value))
|
|
224
|
+
throw new TypeError(error);
|
|
225
|
+
const system = optionalString(value.system);
|
|
226
|
+
const code = optionalString(value.code);
|
|
227
|
+
const display = optionalString(value.display);
|
|
228
|
+
if (!code && !display)
|
|
229
|
+
throw new TypeError(error);
|
|
230
|
+
return Object.freeze({ ...(system ? { system } : {}), ...(code ? { code } : {}), ...(display ? { display } : {}) });
|
|
231
|
+
}
|
|
232
|
+
function normalizePeriods(value, index) {
|
|
233
|
+
if (!Array.isArray(value))
|
|
234
|
+
throw new TypeError(`research_study_associated_party_${index}_period_invalid`);
|
|
235
|
+
return Object.freeze(value.map(item => {
|
|
236
|
+
if (!isRecord(item))
|
|
237
|
+
throw new TypeError(`research_study_associated_party_${index}_period_invalid`);
|
|
238
|
+
const start = optionalString(item.start);
|
|
239
|
+
const end = optionalString(item.end);
|
|
240
|
+
if (!start && !end)
|
|
241
|
+
throw new TypeError(`research_study_associated_party_${index}_period_invalid`);
|
|
242
|
+
if ((start && !isFhirDateTime(start)) || (end && !isFhirDateTime(end))) {
|
|
243
|
+
throw new TypeError(`research_study_associated_party_${index}_period_invalid`);
|
|
244
|
+
}
|
|
245
|
+
if (start && end && Date.parse(end) < Date.parse(start)) {
|
|
246
|
+
throw new TypeError(`research_study_associated_party_${index}_period_invalid`);
|
|
247
|
+
}
|
|
248
|
+
return Object.freeze({ ...(start ? { start } : {}), ...(end ? { end } : {}) });
|
|
249
|
+
}));
|
|
250
|
+
}
|
|
251
|
+
function normalizePartyReference(value, index) {
|
|
252
|
+
const error = `research_study_associated_party_${index}_party_reference_invalid`;
|
|
253
|
+
if (!isRecord(value))
|
|
254
|
+
throw new TypeError(error);
|
|
255
|
+
const reference = optionalString(value.reference);
|
|
256
|
+
const type = optionalString(value.type);
|
|
257
|
+
const display = optionalString(value.display);
|
|
258
|
+
if (!reference)
|
|
259
|
+
throw new TypeError(error);
|
|
260
|
+
const allowed = ['Organization', 'Practitioner', 'PractitionerRole'];
|
|
261
|
+
if (type && !allowed.includes(type))
|
|
262
|
+
throw new TypeError(error);
|
|
263
|
+
const relativeType = reference.match(/^(Organization|Practitioner|PractitionerRole|[A-Z][A-Za-z]+)\//)?.[1];
|
|
264
|
+
if (relativeType && !allowed.includes(relativeType))
|
|
265
|
+
throw new TypeError(error);
|
|
266
|
+
return Object.freeze({
|
|
267
|
+
reference,
|
|
268
|
+
...(type ? { type: type } : {}),
|
|
269
|
+
...(display ? { display } : {}),
|
|
270
|
+
});
|
|
271
|
+
}
|
|
272
|
+
function conceptValues(concepts) {
|
|
273
|
+
return concepts.flatMap(concept => {
|
|
274
|
+
const coded = (concept.coding || []).flatMap(coding => coding.code
|
|
275
|
+
? [`${coding.system ? `${coding.system}|` : ''}${coding.code}`]
|
|
276
|
+
: []);
|
|
277
|
+
return coded.length > 0 ? coded : concept.text ? [concept.text] : [];
|
|
278
|
+
});
|
|
279
|
+
}
|
|
280
|
+
function addClaim(claims, name, values) {
|
|
281
|
+
if (values.length > 0)
|
|
282
|
+
claims[name] = Object.freeze([...values]);
|
|
283
|
+
}
|
|
284
|
+
function strings(value) {
|
|
285
|
+
const result = optionalString(value);
|
|
286
|
+
return result ? [result] : [];
|
|
287
|
+
}
|
|
288
|
+
function conceptsValue(value, error) {
|
|
289
|
+
if (value === undefined)
|
|
290
|
+
return [];
|
|
291
|
+
const concepts = Array.isArray(value)
|
|
292
|
+
? normalizeConcepts(value, error)
|
|
293
|
+
: Object.freeze([normalizeConcept(value, error)]);
|
|
294
|
+
return conceptValues(concepts);
|
|
295
|
+
}
|
|
296
|
+
function references(value, nestedKey) {
|
|
297
|
+
let candidate = value;
|
|
298
|
+
if (nestedKey) {
|
|
299
|
+
if (!isRecord(value))
|
|
300
|
+
return [];
|
|
301
|
+
candidate = value[nestedKey];
|
|
302
|
+
}
|
|
303
|
+
if (candidate === undefined)
|
|
304
|
+
return [];
|
|
305
|
+
const items = Array.isArray(candidate) ? candidate : [candidate];
|
|
306
|
+
return items.flatMap(item => isRecord(item) && optionalString(item.reference) ? [String(item.reference).trim()] : []);
|
|
307
|
+
}
|
|
308
|
+
function identifiers(value) {
|
|
309
|
+
if (value === undefined)
|
|
310
|
+
return [];
|
|
311
|
+
if (!Array.isArray(value))
|
|
312
|
+
throw new TypeError('research_study_identifier_invalid');
|
|
313
|
+
return value.flatMap(item => {
|
|
314
|
+
if (!isRecord(item))
|
|
315
|
+
throw new TypeError('research_study_identifier_invalid');
|
|
316
|
+
const system = optionalString(item.system);
|
|
317
|
+
const identifier = optionalString(item.value);
|
|
318
|
+
return identifier ? [`${system ? `${system}|` : ''}${identifier}`] : [];
|
|
319
|
+
});
|
|
320
|
+
}
|
|
321
|
+
function periodValues(value, error) {
|
|
322
|
+
if (value === undefined)
|
|
323
|
+
return [];
|
|
324
|
+
if (!isRecord(value))
|
|
325
|
+
throw new TypeError(error);
|
|
326
|
+
const start = optionalString(value.start);
|
|
327
|
+
const end = optionalString(value.end);
|
|
328
|
+
if ((start && !isFhirDateTime(start)) || (end && !isFhirDateTime(end)))
|
|
329
|
+
throw new TypeError(error);
|
|
330
|
+
return [start, end].filter((item) => Boolean(item));
|
|
331
|
+
}
|
|
332
|
+
function codeableReferences(value, key) {
|
|
333
|
+
if (value === undefined)
|
|
334
|
+
return [];
|
|
335
|
+
if (!Array.isArray(value))
|
|
336
|
+
throw new TypeError('research_study_focus_invalid');
|
|
337
|
+
return value.flatMap(item => {
|
|
338
|
+
if (!isRecord(item))
|
|
339
|
+
throw new TypeError('research_study_focus_invalid');
|
|
340
|
+
return key === 'concept'
|
|
341
|
+
? conceptsValue(item.concept, 'research_study_focus_invalid')
|
|
342
|
+
: references(item.reference);
|
|
343
|
+
});
|
|
344
|
+
}
|
|
345
|
+
function backboneStrings(value, key) {
|
|
346
|
+
if (value === undefined)
|
|
347
|
+
return [];
|
|
348
|
+
if (!Array.isArray(value))
|
|
349
|
+
throw new TypeError('research_study_backbone_invalid');
|
|
350
|
+
return value.flatMap(item => isRecord(item) ? strings(item[key]) : []);
|
|
351
|
+
}
|
|
352
|
+
function backboneConcepts(value, key) {
|
|
353
|
+
if (value === undefined)
|
|
354
|
+
return [];
|
|
355
|
+
if (!Array.isArray(value))
|
|
356
|
+
throw new TypeError('research_study_backbone_invalid');
|
|
357
|
+
return value.flatMap(item => isRecord(item) ? conceptsValue(item[key], 'research_study_backbone_invalid') : []);
|
|
358
|
+
}
|
|
359
|
+
function nestedNumber(value, key) {
|
|
360
|
+
if (!isRecord(value) || value[key] === undefined)
|
|
361
|
+
return [];
|
|
362
|
+
const number = Number(value[key]);
|
|
363
|
+
if (!Number.isInteger(number) || number < 0)
|
|
364
|
+
throw new TypeError('research_study_recruitment_invalid');
|
|
365
|
+
return [String(number)];
|
|
366
|
+
}
|
|
367
|
+
function progressStatusValues(value) {
|
|
368
|
+
const result = { stateActual: [], statePeriod: [], statePeriodActual: [] };
|
|
369
|
+
if (value === undefined)
|
|
370
|
+
return result;
|
|
371
|
+
if (!Array.isArray(value))
|
|
372
|
+
throw new TypeError('research_study_progress_status_invalid');
|
|
373
|
+
for (const item of value) {
|
|
374
|
+
if (!isRecord(item))
|
|
375
|
+
throw new TypeError('research_study_progress_status_invalid');
|
|
376
|
+
const states = conceptsValue(item.state, 'research_study_progress_status_invalid');
|
|
377
|
+
const dates = periodValues(item.period, 'research_study_progress_status_invalid');
|
|
378
|
+
const actual = typeof item.actual === 'boolean' ? String(item.actual) : undefined;
|
|
379
|
+
for (const state of states) {
|
|
380
|
+
if (actual)
|
|
381
|
+
result.stateActual.push(`${state}$${actual}`);
|
|
382
|
+
for (const date of dates) {
|
|
383
|
+
result.statePeriod.push(`${state}$${date}`);
|
|
384
|
+
if (actual)
|
|
385
|
+
result.statePeriodActual.push(`${state}$${date}$${actual}`);
|
|
386
|
+
}
|
|
387
|
+
}
|
|
388
|
+
}
|
|
389
|
+
return result;
|
|
390
|
+
}
|
|
391
|
+
function optionalString(value) {
|
|
392
|
+
const normalized = typeof value === 'string' ? value.trim() : '';
|
|
393
|
+
return normalized || undefined;
|
|
394
|
+
}
|
|
395
|
+
function isFhirDateTime(value) {
|
|
396
|
+
return /^\d{4}(?:-\d{2}(?:-\d{2}(?:T\d{2}:\d{2}:\d{2}(?:\.\d+)?(?:Z|[+-]\d{2}:\d{2}))?)?)?$/.test(value)
|
|
397
|
+
&& !Number.isNaN(Date.parse(value));
|
|
398
|
+
}
|
|
399
|
+
function isRecord(value) {
|
|
400
|
+
return typeof value === 'object' && value !== null && !Array.isArray(value);
|
|
401
|
+
}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "vet-data-utils-ts",
|
|
3
|
-
"version": "0.
|
|
3
|
+
"version": "0.5.0",
|
|
4
4
|
"description": "Browser-safe governed VetChain data contracts",
|
|
5
5
|
"license": "Apache-2.0",
|
|
6
6
|
"author": "Connecting Solution & Applications Ltd",
|
|
@@ -44,6 +44,10 @@
|
|
|
44
44
|
"types": "./dist/organization-application.d.ts",
|
|
45
45
|
"default": "./dist/organization-application.js"
|
|
46
46
|
},
|
|
47
|
+
"./research-study": {
|
|
48
|
+
"types": "./dist/research-study.d.ts",
|
|
49
|
+
"default": "./dist/research-study.js"
|
|
50
|
+
},
|
|
47
51
|
"./sectors": {
|
|
48
52
|
"types": "./dist/sectors.d.ts",
|
|
49
53
|
"default": "./dist/sectors.js"
|