vesper-memory 0.5.3 → 0.6.0

package/dist/consolidation/pipeline.js

@@ -4,16 +4,31 @@
  * Nightly process: working → semantic memory transformation.
  * Runs at 3 AM, extracts knowledge, applies decay, detects conflicts.
  */
+import Database from "better-sqlite3";
+import { randomUUID } from "node:crypto";
+import * as fs from "node:fs";
+import * as path from "node:path";
+import { ensureBackupsDirectory } from "../utils/paths.js";
 export class ConsolidationPipeline {
-    workingMemory;
     semanticMemory;
     skillLibrary;
     db;
-    constructor(workingMemory, semanticMemory, skillLibrary, db) {
-        this.workingMemory = workingMemory;
+    batchSize;
+    backupDirectory;
+    now;
+    backupRetentionDays;
+    constructor(workingMemory, semanticMemory, skillLibrary, db, options = {}) {
+        // Kept in the signature for API compatibility. Canonical ingestion no
+        // longer reads Redis through WorkingMemoryLayer.
+        void workingMemory;
         this.semanticMemory = semanticMemory;
         this.skillLibrary = skillLibrary;
         this.db = db;
+        this.batchSize = Math.max(1, Math.floor(options.batchSize ?? 100));
+        this.backupDirectory = options.backupDirectory;
+        this.now = options.now ?? (() => new Date());
+        this.backupRetentionDays = Math.max(1, options.backupRetentionDays ?? 7);
+        this.ensureDurabilitySchema();
     }
     /**
      * Run full consolidation cycle
@@ -21,7 +36,7 @@ export class ConsolidationPipeline {
      */
     async consolidate(namespace) {
         const startTime = Date.now();
-        console.error('[CONSOLIDATION] Starting consolidation cycle...');
+        console.error("[CONSOLIDATION] Starting consolidation cycle...");
         const stats = {
             memoriesProcessed: 0,
             entitiesExtracted: 0,
@@ -32,36 +47,40 @@ export class ConsolidationPipeline {
             duration: 0,
         };
         try {
-            // Determine namespaces to consolidate
-            const namespacesToProcess = namespace
-                ? [namespace]
-                : this.getDistinctNamespaces();
-            for (const ns of namespacesToProcess) {
-                // Step 1: Extract from working memory
-                const recentMemories = await this.workingMemory.getRecent(100, ns);
-                stats.memoriesProcessed += recentMemories.length;
-                for (const memory of recentMemories) {
-                    const extracted = this.extractKnowledge(memory);
-                    for (const entity of extracted.entities) {
-                        this.semanticMemory.upsertEntity(entity, ns);
-                        stats.entitiesExtracted++;
-                    }
-                    for (const rel of extracted.relationships) {
-                        this.semanticMemory.upsertRelationship(rel, ns);
-                        stats.relationshipsCreated++;
-                    }
+            // Step 1: Read a bounded batch from the canonical SQLite store. Redis is
+            // a cache and must not determine whether a durable memory is processed.
+            const canonicalMemories = this.getUnconsolidatedMemories(namespace);
+            const processedNamespaces = new Set();
+            for (const row of canonicalMemories) {
+                const ns = row.namespace || "default";
+                const memory = this.toConsolidationMemory(row);
+                try {
+                    const result = this.processMemory(row, memory, ns);
+                    stats.memoriesProcessed++;
+                    stats.entitiesExtracted += result.entitiesExtracted;
+                    stats.relationshipsCreated += result.relationshipsCreated;
+                    stats.skillsExtracted += result.skillsExtracted;
+                    processedNamespaces.add(ns);
+                }
+                catch (error) {
+                    // The per-memory transaction rolls back both derived work and the
+                    // checkpoint. A malformed or transiently failing row remains retryable.
+                    console.error(`[CONSOLIDATION] Failed memory ${row.id}; leaving unconsolidated:`, error instanceof Error ? error.message : String(error));
                 }
+            }
+            const namespacesToMaintain = namespace
+                ? [namespace]
+                : Array.from(new Set([...this.getDistinctNamespaces(), ...processedNamespaces]));
+            for (const ns of namespacesToMaintain) {
                 // Step 2: Apply temporal decay
-                this.semanticMemory.applyTemporalDecay(ns);
+                this.semanticMemory.applyTemporalDecay(ns, this.now());
                 // Step 3: Detect conflicts
                 stats.conflictsDetected += this.detectConflicts(ns);
                 // Step 4: Prune low-value memories
                 stats.memoriesPruned += this.pruneMemories(ns);
-                // Step 5: Extract skills (simplified)
-                stats.skillsExtracted += this.extractSkills(recentMemories, ns);
             }
             // Step 6: Create backup
-            this.createBackup();
+            await this.createBackup();
             stats.duration = Date.now() - startTime;
             console.error(`[CONSOLIDATION] Complete! Processed ${stats.memoriesProcessed} memories in ${stats.duration}ms`);
             console.error(`[CONSOLIDATION] Extracted ${stats.entitiesExtracted} entities, ${stats.relationshipsCreated} relationships`);
@@ -69,10 +88,112 @@ export class ConsolidationPipeline {
             return stats;
         }
         catch (error) {
-            console.error('[CONSOLIDATION] Error:', error);
+            console.error("[CONSOLIDATION] Error:", error);
             throw error;
         }
     }
+    ensureDurabilitySchema() {
+        const memoryColumns = this.db.pragma("table_info(memories)");
+        if (memoryColumns.length > 0 &&
+            !memoryColumns.some((column) => column.name === "consolidated_at")) {
+            this.db.exec("ALTER TABLE memories ADD COLUMN consolidated_at INTEGER");
+        }
+        const conflictColumns = this.db.pragma("table_info(conflicts)");
+        if (conflictColumns.length > 0) {
+            if (!conflictColumns.some((column) => column.name === "entity_id")) {
+                this.db.exec("ALTER TABLE conflicts ADD COLUMN entity_id TEXT");
+            }
+            if (!conflictColumns.some((column) => column.name === "property")) {
+                this.db.exec("ALTER TABLE conflicts ADD COLUMN property TEXT");
+            }
+        }
+        this.db.exec(`
+      CREATE INDEX IF NOT EXISTS idx_memories_consolidation
+      ON memories(namespace, consolidated_at, created_at)
+    `);
+    }
+    getUnconsolidatedMemories(namespace) {
+        if (namespace) {
+            return this.db
+                .prepare(`
+        SELECT id, content, memory_type, created_at, metadata, namespace
+        FROM memories
+        WHERE consolidated_at IS NULL
+          AND COALESCE(namespace, 'default') = ?
+        ORDER BY created_at ASC, id ASC
+        LIMIT ?
+      `)
+                .all(namespace, this.batchSize);
+        }
+        return this.db
+            .prepare(`
+      SELECT id, content, memory_type, created_at, metadata, namespace
+      FROM memories
+      WHERE consolidated_at IS NULL
+      ORDER BY created_at ASC, id ASC
+      LIMIT ?
+    `)
+            .all(this.batchSize);
+    }
+    toConsolidationMemory(row) {
+        let metadata = {};
+        if (row.metadata) {
+            try {
+                const parsed = JSON.parse(row.metadata);
+                if (parsed && typeof parsed === "object" && !Array.isArray(parsed)) {
+                    metadata = parsed;
+                }
+            }
+            catch {
+                // Invalid optional metadata must not make the canonical content unusable.
+            }
+        }
+        const stringArray = (value) => Array.isArray(value)
+            ? value.filter((item) => typeof item === "string" && item.trim().length > 0)
+            : [];
+        const timestamp = typeof row.created_at === "number" ? new Date(row.created_at) : new Date(row.created_at);
+        return {
+            conversationId: row.id,
+            timestamp: Number.isNaN(timestamp.getTime()) ? this.now() : timestamp,
+            fullText: row.content,
+            keyEntities: stringArray(metadata.keyEntities ?? metadata.key_entities),
+            topics: stringArray(metadata.topics),
+            userIntent: typeof metadata.userIntent === "string"
+                ? metadata.userIntent
+                : typeof metadata.user_intent === "string"
+                    ? metadata.user_intent
+                    : "",
+        };
+    }
+    processMemory(row, memory, namespace) {
+        return this.db.transaction(() => {
+            const extracted = this.extractKnowledge(memory);
+            for (const entity of extracted.entities) {
+                this.semanticMemory.upsertEntity(entity, namespace);
+            }
+            for (const rel of extracted.relationships) {
+                this.semanticMemory.upsertRelationship(rel, namespace);
+            }
+            const skillsExtracted = this.extractSkills([memory], namespace);
+            const checkpoint = this.db
+                .prepare(`
+        UPDATE memories
+        SET consolidated_at = ?
+        WHERE id = ?
+          AND COALESCE(namespace, 'default') = ?
+          AND consolidated_at IS NULL
+      `)
+                .run(this.now().getTime(), row.id, namespace);
+            if (checkpoint.changes !== 1) {
+                throw new Error("Canonical memory checkpoint was not acquired");
+            }
+            return {
+                entitiesExtracted: extracted.entities.length,
+                relationshipsCreated: extracted.relationships.length,
+                skillsExtracted,
+            };
+        })();
+    }
     /**
      * Extract entities and relationships from memory
      * Simple keyword-based extraction (will enhance with LLM later)
@@ -85,23 +206,19 @@ export class ConsolidationPipeline {
             for (const entityName of memory.keyEntities) {
                 entities.push({
                     name: entityName,
-                    type: 'concept',
+                    type: "concept",
                     confidence: 0.8,
                 });
             }
         }
         // Extract preferences
-        const prefPatterns = [
-            /prefer (\w+)/gi,
-            /like (\w+)/gi,
-            /favorite is (\w+)/gi,
-        ];
+        const prefPatterns = [/prefer (\w+)/gi, /like (\w+)/gi, /favorite is (\w+)/gi];
         for (const pattern of prefPatterns) {
             const matches = memory.fullText.matchAll(pattern);
             for (const match of matches) {
                 entities.push({
                     name: match[1],
-                    type: 'preference',
+                    type: "preference",
                     confidence: 0.9,
                 });
             }
@@ -112,19 +229,27 @@ export class ConsolidationPipeline {
      * Get distinct namespaces from memories table
      */
     getDistinctNamespaces() {
-        const rows = this.db.prepare("SELECT DISTINCT namespace FROM memories WHERE namespace IS NOT NULL").all();
+        const rows = this.db
+            .prepare(`SELECT namespace FROM (
+        SELECT COALESCE(namespace, 'default') AS namespace FROM memories
+        UNION
+        SELECT COALESCE(namespace, 'default') AS namespace FROM relationships
+      ) ORDER BY namespace`)
+            .all();
         if (rows.length === 0)
-            return ['default'];
-        return rows.map(r => r.namespace);
+            return ["default"];
+        return rows.map((r) => r.namespace);
     }
     /**
      * Detect simple conflicts (temporal impossibilities, contradictions)
      */
-    detectConflicts(namespace = 'default') {
+    detectConflicts(namespace = "default") {
         let detected = 0;
         // Temporal conflicts: same property, overlapping time ranges, different values
-        const conflicts = this.db.prepare(`
-      SELECT f1.id as id1, f2.id as id2, f1.property, f1.value as val1, f2.value as val2
+        const conflicts = this.db
+            .prepare(`
+      SELECT f1.id as id1, f2.id as id2, f1.entity_id, f1.property,
+             f1.value as val1, f2.value as val2
       FROM facts f1
       JOIN facts f2 ON f1.entity_id = f2.entity_id AND f1.property = f2.property
       WHERE f1.id < f2.id
@@ -132,19 +257,26 @@ export class ConsolidationPipeline {
         AND f1.valid_until IS NULL
         AND f2.valid_until IS NULL
         AND f1.namespace = ? AND f2.namespace = ?
-    `).all(namespace, namespace);
+    `)
+            .all(namespace, namespace);
         for (const conflict of conflicts) {
             // Check if already flagged
-            const existing = this.db.prepare('SELECT * FROM conflicts WHERE fact_id_1 = ? AND fact_id_2 = ?').get(conflict.id1, conflict.id2);
+            const existing = this.db
+                .prepare("SELECT * FROM conflicts WHERE fact_id_1 = ? AND fact_id_2 = ?")
+                .get(conflict.id1, conflict.id2);
             if (!existing) {
-                const conflictId = 'conflict_' + Date.now() + '_' + Math.random().toString(36).substr(2, 9);
-                this.db.prepare(`
-          INSERT INTO conflicts (id, fact_id_1, fact_id_2, conflict_type, description, severity, resolution_status, namespace)
-          VALUES (?, ?, ?, ?, ?, ?, ?, ?)
-        `).run(conflictId, conflict.id1, conflict.id2, 'contradiction', `Conflicting values for ${conflict.property}: "${conflict.val1}" vs "${conflict.val2}"`, 'medium', 'flagged', namespace);
+                const conflictId = "conflict_" + Date.now() + "_" + Math.random().toString(36).substr(2, 9);
+                this.db
+                    .prepare(`
+          INSERT INTO conflicts (
+            id, fact_id_1, fact_id_2, conflict_type, entity_id, property,
+            description, severity, resolution_status, namespace
+          ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+        `)
+                    .run(conflictId, conflict.id1, conflict.id2, "contradiction", conflict.entity_id, conflict.property, `Conflicting values for ${conflict.property}: "${conflict.val1}" vs "${conflict.val2}"`, "medium", "flagged", namespace);
                 // Lower confidence on both facts
-                this.db.prepare('UPDATE facts SET confidence = 0.5 WHERE id = ?').run(conflict.id1);
-                this.db.prepare('UPDATE facts SET confidence = 0.5 WHERE id = ?').run(conflict.id2);
+                this.db.prepare("UPDATE facts SET confidence = 0.5 WHERE id = ?").run(conflict.id1);
+                this.db.prepare("UPDATE facts SET confidence = 0.5 WHERE id = ?").run(conflict.id2);
                 detected++;
             }
         }
@@ -153,9 +285,10 @@ export class ConsolidationPipeline {
     /**
      * Prune low-value memories
      */
-    pruneMemories(namespace = 'default') {
+    pruneMemories(namespace = "default") {
         // Find relationships to prune (weak relationships with low-access entities)
-        const toPrune = this.db.prepare(`
+        const toPrune = this.db
+            .prepare(`
       SELECT r.id
       FROM relationships r
       INNER JOIN entities source ON r.source_id = source.id
@@ -164,11 +297,12 @@ export class ConsolidationPipeline {
         AND source.access_count < 3
         AND target.access_count < 3
         AND r.namespace = ?
-    `).all(namespace);
+    `)
+            .all(namespace);
         // Delete them
         let deleted = 0;
         for (const row of toPrune) {
-            this.db.prepare('DELETE FROM relationships WHERE id = ?').run(row.id);
+            this.db.prepare("DELETE FROM relationships WHERE id = ?").run(row.id);
             deleted++;
         }
         return deleted;
@@ -176,19 +310,19 @@ export class ConsolidationPipeline {
     /**
      * Extract skills from positive interactions
      */
-    extractSkills(memories, namespace = 'default') {
+    extractSkills(memories, namespace = "default") {
         let extracted = 0;
         for (const memory of memories) {
             // Look for repeated patterns
-            if (memory.topics && memory.topics.includes('analysis')) {
+            if (memory.topics && memory.topics.includes("analysis")) {
                 // Check if skill already exists
-                const existing = this.skillLibrary.search('data analysis', 1, namespace);
+                const existing = this.skillLibrary.search("data analysis", 1, namespace);
                 if (existing.length === 0) {
                     this.skillLibrary.addSkill({
-                        name: 'Data Analysis',
-                        description: 'Analyze datasets and provide insights',
-                        category: 'analysis',
-                        triggers: ['analyze', 'data', 'insights'],
+                        name: "Data Analysis",
+                        description: "Analyze datasets and provide insights",
+                        category: "analysis",
+                        triggers: ["analyze", "data", "insights"],
                     }, namespace);
                     extracted++;
                 }
@@ -199,13 +333,122 @@ export class ConsolidationPipeline {
     /**
      * Create backup for rollback capability
      */
-    createBackup() {
-        const backupId = 'backup_' + Date.now() + '_' + Math.random().toString(36).substr(2, 9);
-        const now = new Date().toISOString();
-        this.db.prepare(`
-      INSERT INTO backup_metadata (id, backup_timestamp, backup_type, status, backup_path, created_at, expires_at)
-      VALUES (?, ?, ?, ?, ?, ?, ?)
-    `).run(backupId, now, 'consolidation', 'completed', './backups/' + backupId + '.db', now, new Date(Date.now() + 7 * 24 * 60 * 60 * 1000).toISOString());
+    async createBackup() {
+        const backupId = `backup_${this.now().getTime()}_${randomUUID()}`;
+        const now = this.now();
+        const nowIso = now.toISOString();
+        const expiresAt = new Date(now.getTime() + this.backupRetentionDays * 24 * 60 * 60 * 1000).toISOString();
+        const backupDirectory = this.backupDirectory
+            ? path.resolve(this.backupDirectory)
+            : ensureBackupsDirectory();
+        fs.mkdirSync(backupDirectory, { recursive: true, mode: 0o700 });
+        const backupDirectoryStats = fs.lstatSync(backupDirectory);
+        if (backupDirectoryStats.isSymbolicLink() || !backupDirectoryStats.isDirectory()) {
+            throw new Error(`Backup destination is not a secure directory: ${backupDirectory}`);
+        }
+        fs.chmodSync(backupDirectory, 0o700);
+        const backupPath = path.join(backupDirectory, `${backupId}.db`);
+        await this.db.backup(backupPath);
+        fs.chmodSync(backupPath, 0o600);
+        const fileStats = fs.statSync(backupPath);
+        if (!fileStats.isFile() || fileStats.size === 0) {
+            throw new Error(`SQLite backup was not created at ${backupPath}`);
+        }
+        const verificationDb = new Database(backupPath, { readonly: true, fileMustExist: true });
+        try {
+            const quickCheck = verificationDb.pragma("quick_check", { simple: true });
+            if (quickCheck !== "ok") {
+                throw new Error(`SQLite backup verification failed: ${String(quickCheck)}`);
+            }
+        }
+        finally {
+            verificationDb.close();
+        }
+        const counts = {
+            memories: this.tableCount("memories"),
+            entities: this.tableCount("entities"),
+            relationships: this.tableCount("relationships"),
+            facts: this.tableCount("facts"),
+            skills: this.tableCount("skills"),
+        };
+        this.insertBackupMetadata({
+            id: backupId,
+            path: backupPath,
+            createdAt: nowIso,
+            expiresAt,
+            size: fileStats.size,
+            counts,
+        });
+        this.removeExpiredBackups(backupDirectory, now);
+    }
+    removeExpiredBackups(backupDirectory, now) {
+        const root = path.resolve(backupDirectory);
+        const rows = this.db
+            .prepare(`SELECT id, backup_path FROM backup_metadata
+         WHERE expires_at IS NOT NULL AND expires_at <= ?`)
+            .all(now.toISOString());
+        const removeMetadata = this.db.prepare("DELETE FROM backup_metadata WHERE id = ?");
+        for (const row of rows) {
+            if (!row.backup_path) {
+                removeMetadata.run(row.id);
+                continue;
+            }
+            const candidate = path.resolve(row.backup_path);
+            const isInsideRoot = candidate.startsWith(`${root}${path.sep}`);
+            if (!isInsideRoot || path.dirname(candidate) !== root) {
+                console.error(`[CONSOLIDATION] Refusing to delete backup outside configured directory: ${candidate}`);
+                continue;
+            }
+            if (fs.existsSync(candidate)) {
+                const stats = fs.lstatSync(candidate);
+                if (stats.isSymbolicLink() || !stats.isFile()) {
+                    console.error(`[CONSOLIDATION] Refusing to delete unsafe backup path: ${candidate}`);
+                    continue;
+                }
+                fs.unlinkSync(candidate);
+            }
+            removeMetadata.run(row.id);
+        }
+    }
+    tableCount(table) {
+        const exists = this.db
+            .prepare("SELECT 1 FROM sqlite_master WHERE type = 'table' AND name = ?")
+            .get(table);
+        if (!exists)
+            return 0;
+        return this.db.prepare(`SELECT COUNT(*) AS count FROM ${table}`).get()
+            .count;
+    }
+    insertBackupMetadata(backup) {
+        const available = new Set(this.db.pragma("table_info(backup_metadata)").map((column) => column.name));
+        if (available.size === 0) {
+            throw new Error("backup_metadata table is missing");
+        }
+        const candidates = [
+            ["id", backup.id],
+            ["backup_timestamp", backup.createdAt],
+            ["backup_type", "consolidation"],
+            ["status", "completed"],
+            ["backup_path", backup.path],
+            ["file_size_bytes", backup.size],
+            ["num_memories", backup.counts.memories],
+            ["num_entities", backup.counts.entities],
+            ["entities_count", backup.counts.entities],
+            ["num_relationships", backup.counts.relationships],
+            ["relationships_count", backup.counts.relationships],
+            ["facts_count", backup.counts.facts],
+            ["skills_count", backup.counts.skills],
+            ["created_at", backup.createdAt],
+            ["expires_at", backup.expiresAt],
+            ["notes", "Verified with PRAGMA quick_check after better-sqlite3 backup"],
+            ["metadata", JSON.stringify({ verified: true, method: "better-sqlite3.backup" })],
+        ];
+        const values = candidates.filter(([column]) => available.has(column));
+        const columns = values.map(([column]) => column);
+        const placeholders = columns.map(() => "?").join(", ");
+        this.db
+            .prepare(`INSERT INTO backup_metadata (${columns.join(", ")}) VALUES (${placeholders})`)
+            .run(...values.map(([, value]) => value));
     }
 }
 //# sourceMappingURL=pipeline.js.map

package/dist/consolidation/pipeline.js.map

@@ -1 +1 @@
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package/dist/memory-layers/semantic-memory.d.ts

@@ -4,11 +4,11 @@
  * SQLite knowledge graph with HippoRAG Personalized PageRank.
  * v0.5.0: Added namespace parameter for multi-agent isolation.
  */
-import Database from 'better-sqlite3';
+import Database from "better-sqlite3";
 export interface Entity {
     id: string;
     name: string;
-    type: 'person' | 'project' | 'concept' | 'preference';
+    type: "person" | "project" | "concept" | "preference";
     description?: string;
     confidence: number;
 }
@@ -46,6 +46,11 @@ export interface PageRankWithFactsResult {
 export declare class SemanticMemoryLayer {
     private db;
     constructor(db: Database.Database);
+    /**
+     * Older databases predate incremental decay. Keep the migration next to the
+     * behavior so every caller gets the non-compounding semantics.
+     */
+    private ensureDecayCursor;
     upsertEntity(entity: Partial<Entity> & {
         name: string;
         type: string;
@@ -59,7 +64,7 @@ export declare class SemanticMemoryLayer {
     }, namespace?: string): void;
     personalizedPageRank(entityId: string, depth?: number, namespace?: string): any[];
     personalizedPageRankWithFacts(entityId: string, depth?: number, namespace?: string): PageRankWithFactsResult;
-    applyTemporalDecay(namespace?: string): number;
+    applyTemporalDecay(namespace?: string, now?: Date): number;
     getPreferences(domain?: string, namespace?: string): any[];
     getByTimeRange(start?: Date, end?: Date, namespace?: string): any[];
 }

package/dist/memory-layers/semantic-memory.d.ts.map

@@ -1 +1 @@
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