varri-js 1.0.0 → 1.0.2

package/logo/vaRRI.logo.svg

@@ -0,0 +1,152 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<svg
+   xmlns:dc="http://purl.org/dc/elements/1.1/"
+   xmlns:cc="http://creativecommons.org/ns#"
+   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+   xmlns:svg="http://www.w3.org/2000/svg"
+   xmlns="http://www.w3.org/2000/svg"
+   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
+   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+   viewBox="0 0 200 200"
+   width="200"
+   height="200"
+   version="1.1"
+   id="svg871"
+   sodipodi:docname="vaRRI.logo.svg"
+   inkscape:version="1.0.2 (e86c870879, 2021-01-15)"
+   inkscape:export-filename="vaRRI.logo.40x40.png"
+   inkscape:export-xdpi="19.200001"
+   inkscape:export-ydpi="19.200001">
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+     id="metadata875">
+    <rdf:RDF>
+      <cc:Work
+         rdf:about="">
+        <dc:format>image/svg+xml</dc:format>
+        <dc:type
+           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
+        <dc:title />
+      </cc:Work>
+    </rdf:RDF>
+  </metadata>
+  <sodipodi:namedview
+     pagecolor="#ffffff"
+     bordercolor="#666666"
+     borderopacity="1"
+     objecttolerance="10"
+     gridtolerance="10"
+     guidetolerance="10"
+     inkscape:pageopacity="0"
+     inkscape:pageshadow="2"
+     inkscape:window-width="2452"
+     inkscape:window-height="1417"
+     id="namedview873"
+     showgrid="false"
+     showguides="true"
+     inkscape:guide-bbox="true"
+     fit-margin-top="0"
+     fit-margin-left="0"
+     fit-margin-right="0"
+     fit-margin-bottom="0"
+     inkscape:zoom="1.41"
+     inkscape:cx="-84.916804"
+     inkscape:cy="81.684705"
+     inkscape:window-x="2020"
+     inkscape:window-y="-8"
+     inkscape:window-maximized="1"
+     inkscape:current-layer="svg871"
+     lock-margins="true"
+     inkscape:document-rotation="0" />
+  <defs
+     id="defs857">
+    <!-- Stil-Definitionen -->
+    <style
+       id="style855">
+      .arc {
+        fill: none;
+        stroke: #06B6D4; /* Türkis / Cyan für die gebogenen Linien */
+        stroke-width: 16;
+        stroke-linecap: round;
+      }
+      .letter {
+        font-family: -apple-system, BlinkMacSystemFont, &quot;Segoe UI&quot;, Roboto, Helvetica, Arial, sans-serif;
+        font-weight: 800;
+        font-size: 80px;
+        fill: #0F172A; /* Dunkelblau / Marine */
+        text-anchor: middle;
+        dominant-baseline: central;
+      }
+      .brand-title {
+        font-family: -apple-system, BlinkMacSystemFont, &quot;Segoe UI&quot;, Roboto, Helvetica, Arial, sans-serif;
+        font-weight: 700;
+        font-size: 32px;
+        fill: #0F172A;
+        text-anchor: middle;
+      }
+      .brand-title-js {
+        fill: #06B6D4; /* Farb-Akzent für -js */
+      }
+      .brand-subtitle {
+        font-family: -apple-system, BlinkMacSystemFont, &quot;Segoe UI&quot;, Roboto, Helvetica, Arial, sans-serif;
+        font-weight: 500;
+        font-size: 13px;
+        fill: #64748B;
+        text-anchor: middle;
+        letter-spacing: 0.5px;
+      }
+    </style>
+  </defs>
+  <ellipse
+     style="fill:#ffffff;stroke:#ffffff;stroke-width:1;stroke-miterlimit:0;stop-color:#000000"
+     id="path1425"
+     cx="101.16312"
+     cy="100.20045"
+     rx="97.163124"
+     ry="98.200447" />
+  <!-- Hintergrund (Optional, leicht transparent/weiß) -->
+  <rect
+     width="100%"
+     height="100%"
+     fill="none"
+     id="rect859"
+     x="-112"
+     y="-102.12804" />
+  <!-- BILDMARKE -->
+  <path
+     class="arc"
+     d="m 31.334498,61.270222 a 87.285773,96.93923 0 0 1 139.657232,0"
+     id="path861"
+     style="stroke:#004fce;stroke-opacity:1" />
+  <path
+     class="arc"
+     d="m 31.334498,140.7604 a 87.285773,96.93923 0 0 0 139.657232,0"
+     id="path867"
+     style="fill:none;stroke:#e65c00;stroke-opacity:1" />
+  <g
+     id="g931"
+     transform="matrix(1.1507186,0,0,1.150894,-438.50844,-50.447334)"
+     style="fill:#4d4d4d;stroke-width:0.868952"
+     inkscape:export-xdpi="96"
+     inkscape:export-ydpi="96">
+    <g
+       aria-label="V"
+       id="text863-8"
+       style="font-weight:800;font-size:80px;font-family:'-apple-system', BlinkMacSystemFont, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif;dominant-baseline:central;text-anchor:middle;fill:#4d4d4d;stroke-width:0.868952"
+       class="letter">
+      <path
+         d="m 477.8096,100.47928 -19.29687,56.01563 h -14.29688 l -19.0625,-56.01563 h 13.59375 l 11.67969,38.98438 q 0.9375,3.16406 1.13281,5.58594 h 0.23438 q 0.27343,-2.61719 1.21093,-5.74219 l 11.60157,-38.82813 z"
+         style="font-weight:800;font-size:80px;font-family:'-apple-system', BlinkMacSystemFont, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif;dominant-baseline:central;text-anchor:middle;fill:#4d4d4d;stroke-width:0.868952"
+         id="path837" />
+    </g>
+    <g
+       aria-label="A"
+       id="text865-8"
+       style="font-weight:800;font-size:80px;font-family:'-apple-system', BlinkMacSystemFont, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif;dominant-baseline:central;text-anchor:middle;fill:#4d4d4d;stroke-width:0.868952"
+       class="letter">
+      <path
+         d="m 512.81976,169.40876 h -13.75 l -3.98437,-12.46094 h -19.92188 l -3.94531,12.46094 h -13.67187 l 20.39062,-56.01563 h 14.96094 z m -20.625,-22.14844 -6.01562,-18.82812 q -0.66406,-2.10938 -0.9375,-5.03907 h -0.3125 q -0.19531,2.46094 -0.97656,4.88282 l -6.09375,18.98437 z"
+         style="font-weight:800;font-size:80px;font-family:'-apple-system', BlinkMacSystemFont, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif;dominant-baseline:central;text-anchor:middle;fill:#4d4d4d;stroke-width:0.868952"
+         id="path840" />
+    </g>
+  </g>
+</svg>

package/package.json

@@ -1,16 +1,16 @@
 {
   "name": "varri-js",
-  "version": "1.0.0",
-  "description": "Browser library for visualising and annotating RNA-RNA interactions",
+  "version": "1.0.2",
+  "description": "Browser viewer and JavaScript library for visualising and annotating RNA-RNA interactions",
   "license": "MIT",
   "author": "Bioinformatics Group, University of Freiburg",
-  "homepage": "https://backofenlab.github.io/vaRRI-js/",
+  "homepage": "https://backofenlab.github.io/vaRRI/",
   "repository": {
     "type": "git",
-    "url": "git+https://github.com/BackofenLab/vaRRI-js.git"
+    "url": "git+https://github.com/BackofenLab/vaRRI.git"
   },
   "bugs": {
-    "url": "https://github.com/BackofenLab/vaRRI-js/issues"
+    "url": "https://github.com/BackofenLab/vaRRI/issues"
   },
   "keywords": [
     "bioinformatics",
@@ -25,6 +25,12 @@
   "jsdelivr": "dist/vaRRI.min.js",
   "exports": {
     ".": "./src/vaRRI.js",
+    "./index.html": "./index.html",
+    "./index.js": "./index.js",
+    "./style.css": "./style.css",
+    "./example-data.js": "./example-data.js",
+    "./README.html": "./README.html",
+    "./citation.html": "./citation.html",
     "./vaRRI.js": "./src/vaRRI.js",
     "./dist/vaRRI.min.js": "./dist/vaRRI.min.js",
     "./dist/vaRRI.min.js.map": "./dist/vaRRI.min.js.map",
@@ -36,6 +42,17 @@
     "./package.json": "./package.json"
   },
   "files": [
+    "index.html",
+    "index.js",
+    "style.css",
+    "example-data.js",
+    "README.html",
+    "citation.html",
+    "CITATION.bib",
+    "CITATION.cff",
+    "logo/",
+    "doc/",
+    "docu.free-trailing-ends.md",
     "dist/",
     "fornac/",
     "src/README.md",
@@ -49,6 +66,7 @@
     "build": "esbuild src/vaRRI.js --minify --sourcemap --outfile=dist/vaRRI.min.js",
     "test": "jest",
     "test:ci": "jest --runInBand",
+    "test:package": "node scripts/check-package.cjs",
     "prepack": "npm run build"
   },
   "jest": {

package/src/README.md

@@ -1,4 +1,4 @@
-# vaRRI-js JavaScript API
+# vaRRI JavaScript API
 
 `src/vaRRI.js` exposes one global object, `window.vaRRI`. In CommonJS test
 code, `require('./src/vaRRI.js')` returns the same object.