usearch 2.21.4 → 2.25.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +65 -69
- package/binding.gyp +15 -37
- package/c/CMakeLists.txt +4 -5
- package/c/README.md +8 -8
- package/c/lib.cpp +32 -14
- package/c/test.c +124 -1
- package/c/usearch.h +24 -3
- package/cpp/CMakeLists.txt +4 -0
- package/cpp/README.md +5 -5
- package/cpp/bench.cpp +97 -116
- package/cpp/test.cpp +117 -20
- package/include/usearch/index.hpp +224 -48
- package/include/usearch/index_dense.hpp +105 -40
- package/include/usearch/index_plugins.hpp +1387 -204
- package/javascript/README.md +1 -1
- package/javascript/dist/cjs/usearch.d.ts +8 -3
- package/javascript/dist/cjs/usearch.js +12 -4
- package/javascript/dist/esm/usearch.d.ts +8 -3
- package/javascript/dist/esm/usearch.js +12 -4
- package/javascript/lib.cpp +17 -0
- package/javascript/usearch.test.js +117 -94
- package/javascript/usearch.ts +14 -6
- package/numkong/.clang-tidy +30 -0
- package/{simsimd → numkong}/.cmake-format.py +18 -0
- package/numkong/.editorconfig +12 -0
- package/numkong/.git-blame-ignore-revs +123 -0
- package/numkong/.mailmap +15 -0
- package/numkong/.spi.yml +11 -0
- package/numkong/.swift-format +14 -0
- package/numkong/CITATION.cff +81 -0
- package/numkong/CONTRIBUTING.md +500 -0
- package/numkong/Cargo.toml +54 -0
- package/numkong/MANIFEST.in +8 -0
- package/numkong/Package.swift +84 -0
- package/numkong/README.md +569 -0
- package/numkong/bench/README.md +217 -0
- package/numkong/bench/bench-browser.html +323 -0
- package/numkong/bench/bench.cpp +344 -0
- package/numkong/bench/bench.hpp +816 -0
- package/numkong/bench/bench.js +148 -0
- package/numkong/bench/bench.mjs +616 -0
- package/numkong/bench/bench_attention.cpp +113 -0
- package/numkong/bench/bench_cast.cpp +264 -0
- package/numkong/bench/bench_cross_amx.cpp +62 -0
- package/numkong/bench/bench_cross_arm.cpp +245 -0
- package/numkong/bench/bench_cross_blas.cpp +309 -0
- package/numkong/bench/bench_cross_loongarch.cpp +106 -0
- package/numkong/bench/bench_cross_power.cpp +84 -0
- package/numkong/bench/bench_cross_rvv.cpp +121 -0
- package/numkong/bench/bench_cross_serial.cpp +151 -0
- package/numkong/bench/bench_cross_sme.cpp +163 -0
- package/numkong/bench/bench_cross_wasm.cpp +142 -0
- package/numkong/bench/bench_cross_x86.cpp +455 -0
- package/numkong/bench/bench_curved.cpp +210 -0
- package/numkong/bench/bench_dot.cpp +315 -0
- package/numkong/bench/bench_each.cpp +503 -0
- package/numkong/bench/bench_geospatial.cpp +112 -0
- package/numkong/bench/bench_maxsim.cpp +154 -0
- package/numkong/bench/bench_mesh.cpp +148 -0
- package/numkong/bench/bench_probability.cpp +60 -0
- package/numkong/bench/bench_reduce.cpp +371 -0
- package/numkong/bench/bench_set.cpp +73 -0
- package/numkong/bench/bench_sparse.cpp +198 -0
- package/numkong/bench/bench_spatial.cpp +347 -0
- package/numkong/bench/bench_trigonometry.cpp +137 -0
- package/numkong/bench/swift/Bench.swift +506 -0
- package/numkong/binding.gyp +169 -0
- package/numkong/build.rs +484 -0
- package/numkong/c/dispatch.h +512 -0
- package/numkong/c/dispatch_bf16.c +447 -0
- package/numkong/c/dispatch_bf16c.c +52 -0
- package/numkong/c/dispatch_e2m3.c +296 -0
- package/numkong/c/dispatch_e3m2.c +284 -0
- package/numkong/c/dispatch_e4m3.c +318 -0
- package/numkong/c/dispatch_e5m2.c +316 -0
- package/numkong/c/dispatch_f16.c +452 -0
- package/numkong/c/dispatch_f16c.c +58 -0
- package/numkong/c/dispatch_f32.c +434 -0
- package/numkong/c/dispatch_f32c.c +99 -0
- package/numkong/c/dispatch_f64.c +348 -0
- package/numkong/c/dispatch_f64c.c +98 -0
- package/numkong/c/dispatch_i16.c +96 -0
- package/numkong/c/dispatch_i32.c +89 -0
- package/numkong/c/dispatch_i4.c +153 -0
- package/numkong/c/dispatch_i64.c +86 -0
- package/numkong/c/dispatch_i8.c +348 -0
- package/numkong/c/dispatch_other.c +348 -0
- package/numkong/c/dispatch_u1.c +193 -0
- package/numkong/c/dispatch_u16.c +124 -0
- package/numkong/c/dispatch_u32.c +118 -0
- package/numkong/c/dispatch_u4.c +153 -0
- package/numkong/c/dispatch_u64.c +102 -0
- package/numkong/c/dispatch_u8.c +364 -0
- package/numkong/c/numkong.c +940 -0
- package/numkong/cmake/nk_arm_isa_probes.cmake +61 -0
- package/numkong/cmake/nk_isa_probe.cmake +90 -0
- package/numkong/cmake/nk_loongarch_isa_probes.cmake +15 -0
- package/numkong/cmake/nk_math_lib.cmake +46 -0
- package/numkong/cmake/nk_power_isa_probes.cmake +15 -0
- package/numkong/cmake/nk_riscv_isa_probes.cmake +19 -0
- package/numkong/cmake/nk_x86_isa_probes.cmake +35 -0
- package/numkong/cmake/toolchain-aarch64-gnu.cmake +86 -0
- package/numkong/cmake/toolchain-android-arm64.cmake +25 -0
- package/numkong/cmake/toolchain-android-armv7.cmake +25 -0
- package/numkong/cmake/toolchain-loongarch64-gnu.cmake +68 -0
- package/numkong/cmake/toolchain-ppc64le-gnu.cmake +74 -0
- package/numkong/cmake/toolchain-riscv64-gnu.cmake +107 -0
- package/numkong/cmake/toolchain-riscv64-llvm.cmake +114 -0
- package/numkong/cmake/toolchain-wasi.cmake +77 -0
- package/numkong/cmake/toolchain-wasm.cmake +70 -0
- package/numkong/cmake/toolchain-wasm64.cmake +62 -0
- package/numkong/cmake/toolchain-x86_64-llvm.cmake +47 -0
- package/numkong/include/README.md +643 -0
- package/numkong/include/module.modulemap +129 -0
- package/numkong/include/numkong/attention/sapphireamx.h +1363 -0
- package/numkong/include/numkong/attention/sme.h +2075 -0
- package/numkong/include/numkong/attention.h +49 -0
- package/numkong/include/numkong/capabilities.h +930 -0
- package/numkong/include/numkong/cast/README.md +262 -0
- package/numkong/include/numkong/cast/diamond.h +64 -0
- package/numkong/include/numkong/cast/haswell.h +823 -0
- package/numkong/include/numkong/cast/icelake.h +475 -0
- package/numkong/include/numkong/cast/loongsonasx.h +252 -0
- package/numkong/include/numkong/cast/neon.h +1174 -0
- package/numkong/include/numkong/cast/powervsx.h +449 -0
- package/numkong/include/numkong/cast/rvv.h +970 -0
- package/numkong/include/numkong/cast/sapphire.h +262 -0
- package/numkong/include/numkong/cast/serial.h +2336 -0
- package/numkong/include/numkong/cast/skylake.h +915 -0
- package/numkong/include/numkong/cast/v128relaxed.h +537 -0
- package/numkong/include/numkong/cast.h +254 -0
- package/numkong/include/numkong/cast.hpp +44 -0
- package/numkong/include/numkong/curved/README.md +223 -0
- package/numkong/include/numkong/curved/genoa.h +182 -0
- package/numkong/include/numkong/curved/haswell.h +276 -0
- package/numkong/include/numkong/curved/neon.h +329 -0
- package/numkong/include/numkong/curved/neonbfdot.h +211 -0
- package/numkong/include/numkong/curved/rvv.h +305 -0
- package/numkong/include/numkong/curved/serial.h +207 -0
- package/numkong/include/numkong/curved/skylake.h +457 -0
- package/numkong/include/numkong/curved/smef64.h +530 -0
- package/numkong/include/numkong/curved.h +513 -0
- package/numkong/include/numkong/curved.hpp +144 -0
- package/numkong/include/numkong/dot/README.md +442 -0
- package/numkong/include/numkong/dot/alder.h +563 -0
- package/numkong/include/numkong/dot/diamond.h +158 -0
- package/numkong/include/numkong/dot/genoa.h +289 -0
- package/numkong/include/numkong/dot/haswell.h +1723 -0
- package/numkong/include/numkong/dot/icelake.h +997 -0
- package/numkong/include/numkong/dot/loongsonasx.h +671 -0
- package/numkong/include/numkong/dot/neon.h +869 -0
- package/numkong/include/numkong/dot/neonbfdot.h +243 -0
- package/numkong/include/numkong/dot/neonfhm.h +358 -0
- package/numkong/include/numkong/dot/neonfp8.h +323 -0
- package/numkong/include/numkong/dot/neonsdot.h +622 -0
- package/numkong/include/numkong/dot/powervsx.h +752 -0
- package/numkong/include/numkong/dot/rvv.h +722 -0
- package/numkong/include/numkong/dot/rvvbb.h +72 -0
- package/numkong/include/numkong/dot/rvvbf16.h +123 -0
- package/numkong/include/numkong/dot/rvvhalf.h +129 -0
- package/numkong/include/numkong/dot/sapphire.h +141 -0
- package/numkong/include/numkong/dot/serial.h +874 -0
- package/numkong/include/numkong/dot/sierra.h +405 -0
- package/numkong/include/numkong/dot/skylake.h +1116 -0
- package/numkong/include/numkong/dot/sve.h +420 -0
- package/numkong/include/numkong/dot/svebfdot.h +75 -0
- package/numkong/include/numkong/dot/svehalf.h +168 -0
- package/numkong/include/numkong/dot/svesdot.h +90 -0
- package/numkong/include/numkong/dot/v128relaxed.h +1293 -0
- package/numkong/include/numkong/dot.h +1136 -0
- package/numkong/include/numkong/dot.hpp +94 -0
- package/numkong/include/numkong/dots/README.md +496 -0
- package/numkong/include/numkong/dots/alder.h +117 -0
- package/numkong/include/numkong/dots/diamond.h +86 -0
- package/numkong/include/numkong/dots/genoa.h +100 -0
- package/numkong/include/numkong/dots/graniteamx.h +733 -0
- package/numkong/include/numkong/dots/haswell.h +310 -0
- package/numkong/include/numkong/dots/icelake.h +180 -0
- package/numkong/include/numkong/dots/loongsonasx.h +176 -0
- package/numkong/include/numkong/dots/neon.h +123 -0
- package/numkong/include/numkong/dots/neonbfdot.h +59 -0
- package/numkong/include/numkong/dots/neonfhm.h +96 -0
- package/numkong/include/numkong/dots/neonfp8.h +99 -0
- package/numkong/include/numkong/dots/neonsdot.h +144 -0
- package/numkong/include/numkong/dots/powervsx.h +194 -0
- package/numkong/include/numkong/dots/rvv.h +2593 -0
- package/numkong/include/numkong/dots/sapphireamx.h +4017 -0
- package/numkong/include/numkong/dots/serial.h +2867 -0
- package/numkong/include/numkong/dots/sierra.h +100 -0
- package/numkong/include/numkong/dots/skylake.h +207 -0
- package/numkong/include/numkong/dots/sme.h +5041 -0
- package/numkong/include/numkong/dots/smebi32.h +477 -0
- package/numkong/include/numkong/dots/smef64.h +1328 -0
- package/numkong/include/numkong/dots/smehalf.h +47 -0
- package/numkong/include/numkong/dots/v128relaxed.h +317 -0
- package/numkong/include/numkong/dots.h +3110 -0
- package/numkong/include/numkong/dots.hpp +641 -0
- package/numkong/include/numkong/each/README.md +465 -0
- package/numkong/include/numkong/each/haswell.h +1658 -0
- package/numkong/include/numkong/each/icelake.h +272 -0
- package/numkong/include/numkong/each/neon.h +1138 -0
- package/numkong/include/numkong/each/neonbfdot.h +211 -0
- package/numkong/include/numkong/each/neonhalf.h +318 -0
- package/numkong/include/numkong/each/rvv.h +1121 -0
- package/numkong/include/numkong/each/sapphire.h +343 -0
- package/numkong/include/numkong/each/serial.h +282 -0
- package/numkong/include/numkong/each/skylake.h +1562 -0
- package/numkong/include/numkong/each/v128relaxed.h +562 -0
- package/numkong/include/numkong/each.h +2232 -0
- package/numkong/include/numkong/each.hpp +434 -0
- package/numkong/include/numkong/geospatial/README.md +147 -0
- package/numkong/include/numkong/geospatial/haswell.h +633 -0
- package/numkong/include/numkong/geospatial/neon.h +615 -0
- package/numkong/include/numkong/geospatial/rvv.h +701 -0
- package/numkong/include/numkong/geospatial/serial.h +309 -0
- package/numkong/include/numkong/geospatial/skylake.h +613 -0
- package/numkong/include/numkong/geospatial/v128relaxed.h +652 -0
- package/numkong/include/numkong/geospatial.h +453 -0
- package/numkong/include/numkong/geospatial.hpp +235 -0
- package/numkong/include/numkong/matrix.hpp +336 -0
- package/numkong/include/numkong/maxsim/README.md +187 -0
- package/numkong/include/numkong/maxsim/alder.h +511 -0
- package/numkong/include/numkong/maxsim/genoa.h +115 -0
- package/numkong/include/numkong/maxsim/haswell.h +553 -0
- package/numkong/include/numkong/maxsim/icelake.h +480 -0
- package/numkong/include/numkong/maxsim/neonsdot.h +394 -0
- package/numkong/include/numkong/maxsim/sapphireamx.h +877 -0
- package/numkong/include/numkong/maxsim/serial.h +490 -0
- package/numkong/include/numkong/maxsim/sme.h +993 -0
- package/numkong/include/numkong/maxsim/v128relaxed.h +280 -0
- package/numkong/include/numkong/maxsim.h +571 -0
- package/numkong/include/numkong/maxsim.hpp +133 -0
- package/numkong/include/numkong/mesh/README.md +219 -0
- package/numkong/include/numkong/mesh/haswell.h +2013 -0
- package/numkong/include/numkong/mesh/neon.h +1821 -0
- package/numkong/include/numkong/mesh/neonbfdot.h +771 -0
- package/numkong/include/numkong/mesh/rvv.h +936 -0
- package/numkong/include/numkong/mesh/serial.h +721 -0
- package/numkong/include/numkong/mesh/skylake.h +2344 -0
- package/numkong/include/numkong/mesh/v128relaxed.h +1081 -0
- package/numkong/include/numkong/mesh.h +666 -0
- package/numkong/include/numkong/mesh.hpp +701 -0
- package/numkong/include/numkong/numkong.h +78 -0
- package/numkong/include/numkong/numkong.hpp +58 -0
- package/numkong/include/numkong/probability/README.md +177 -0
- package/numkong/include/numkong/probability/haswell.h +267 -0
- package/numkong/include/numkong/probability/neon.h +255 -0
- package/numkong/include/numkong/probability/rvv.h +414 -0
- package/numkong/include/numkong/probability/serial.h +181 -0
- package/numkong/include/numkong/probability/skylake.h +324 -0
- package/numkong/include/numkong/probability.h +380 -0
- package/numkong/include/numkong/probability.hpp +120 -0
- package/numkong/include/numkong/random.h +50 -0
- package/numkong/include/numkong/random.hpp +285 -0
- package/numkong/include/numkong/reduce/README.md +552 -0
- package/numkong/include/numkong/reduce/alder.h +636 -0
- package/numkong/include/numkong/reduce/genoa.h +201 -0
- package/numkong/include/numkong/reduce/haswell.h +3785 -0
- package/numkong/include/numkong/reduce/icelake.h +549 -0
- package/numkong/include/numkong/reduce/neon.h +3980 -0
- package/numkong/include/numkong/reduce/neonbfdot.h +142 -0
- package/numkong/include/numkong/reduce/neonfhm.h +293 -0
- package/numkong/include/numkong/reduce/neonsdot.h +357 -0
- package/numkong/include/numkong/reduce/rvv.h +3533 -0
- package/numkong/include/numkong/reduce/serial.h +753 -0
- package/numkong/include/numkong/reduce/sierra.h +338 -0
- package/numkong/include/numkong/reduce/skylake.h +3794 -0
- package/numkong/include/numkong/reduce/sve.h +52 -0
- package/numkong/include/numkong/reduce/v128relaxed.h +2302 -0
- package/numkong/include/numkong/reduce.h +1582 -0
- package/numkong/include/numkong/reduce.hpp +778 -0
- package/numkong/include/numkong/scalar/README.md +89 -0
- package/numkong/include/numkong/scalar/haswell.h +122 -0
- package/numkong/include/numkong/scalar/loongsonasx.h +74 -0
- package/numkong/include/numkong/scalar/neon.h +122 -0
- package/numkong/include/numkong/scalar/neonhalf.h +70 -0
- package/numkong/include/numkong/scalar/powervsx.h +96 -0
- package/numkong/include/numkong/scalar/rvv.h +211 -0
- package/numkong/include/numkong/scalar/sapphire.h +74 -0
- package/numkong/include/numkong/scalar/serial.h +332 -0
- package/numkong/include/numkong/scalar/v128relaxed.h +56 -0
- package/numkong/include/numkong/scalar.h +696 -0
- package/numkong/include/numkong/set/README.md +179 -0
- package/numkong/include/numkong/set/haswell.h +334 -0
- package/numkong/include/numkong/set/icelake.h +485 -0
- package/numkong/include/numkong/set/loongsonasx.h +181 -0
- package/numkong/include/numkong/set/neon.h +363 -0
- package/numkong/include/numkong/set/powervsx.h +326 -0
- package/numkong/include/numkong/set/rvv.h +226 -0
- package/numkong/include/numkong/set/rvvbb.h +117 -0
- package/numkong/include/numkong/set/serial.h +174 -0
- package/numkong/include/numkong/set/sve.h +187 -0
- package/numkong/include/numkong/set/v128relaxed.h +240 -0
- package/numkong/include/numkong/set.h +471 -0
- package/numkong/include/numkong/set.hpp +114 -0
- package/numkong/include/numkong/sets/README.md +149 -0
- package/numkong/include/numkong/sets/haswell.h +63 -0
- package/numkong/include/numkong/sets/icelake.h +66 -0
- package/numkong/include/numkong/sets/loongsonasx.h +52 -0
- package/numkong/include/numkong/sets/neon.h +61 -0
- package/numkong/include/numkong/sets/powervsx.h +65 -0
- package/numkong/include/numkong/sets/serial.h +43 -0
- package/numkong/include/numkong/sets/smebi32.h +1135 -0
- package/numkong/include/numkong/sets/v128relaxed.h +58 -0
- package/numkong/include/numkong/sets.h +382 -0
- package/numkong/include/numkong/sparse/README.md +156 -0
- package/numkong/include/numkong/sparse/icelake.h +463 -0
- package/numkong/include/numkong/sparse/neon.h +288 -0
- package/numkong/include/numkong/sparse/serial.h +117 -0
- package/numkong/include/numkong/sparse/sve2.h +504 -0
- package/numkong/include/numkong/sparse/turin.h +322 -0
- package/numkong/include/numkong/sparse.h +363 -0
- package/numkong/include/numkong/sparse.hpp +113 -0
- package/numkong/include/numkong/spatial/README.md +439 -0
- package/numkong/include/numkong/spatial/alder.h +604 -0
- package/numkong/include/numkong/spatial/diamond.h +240 -0
- package/numkong/include/numkong/spatial/genoa.h +222 -0
- package/numkong/include/numkong/spatial/haswell.h +979 -0
- package/numkong/include/numkong/spatial/icelake.h +1067 -0
- package/numkong/include/numkong/spatial/loongsonasx.h +483 -0
- package/numkong/include/numkong/spatial/neon.h +846 -0
- package/numkong/include/numkong/spatial/neonbfdot.h +164 -0
- package/numkong/include/numkong/spatial/neonfp8.h +258 -0
- package/numkong/include/numkong/spatial/neonsdot.h +429 -0
- package/numkong/include/numkong/spatial/powervsx.h +738 -0
- package/numkong/include/numkong/spatial/rvv.h +991 -0
- package/numkong/include/numkong/spatial/rvvbf16.h +128 -0
- package/numkong/include/numkong/spatial/rvvhalf.h +120 -0
- package/numkong/include/numkong/spatial/serial.h +347 -0
- package/numkong/include/numkong/spatial/sierra.h +516 -0
- package/numkong/include/numkong/spatial/skylake.h +605 -0
- package/numkong/include/numkong/spatial/sve.h +246 -0
- package/numkong/include/numkong/spatial/svebfdot.h +125 -0
- package/numkong/include/numkong/spatial/svehalf.h +136 -0
- package/numkong/include/numkong/spatial/svesdot.h +143 -0
- package/numkong/include/numkong/spatial/v128relaxed.h +969 -0
- package/numkong/include/numkong/spatial.h +1681 -0
- package/numkong/include/numkong/spatial.hpp +183 -0
- package/numkong/include/numkong/spatials/README.md +580 -0
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//! Mesh superposition and alignment: Kabsch, Umeyama, RMSD.
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//! This module provides:
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//! - [`MeshAlignment`]: Computes optimal rigid-body alignment of 3D point sets
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//! # Algorithms
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//!
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//! All three entry points align point cloud A onto point cloud B by minimising
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//! residual squared distance, returning a [`MeshAlignmentResult`] that bundles the
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//! transformation (rotation matrix, scale, and the two centroids) together with
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//! the RMSD of the aligned pairs:
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//!
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//! points without solving for a transform — useful when the clouds are already
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//! aligned.
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//! - **Kabsch** solves the classic orthogonal Procrustes problem: assume both
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//! clouds have matching centroids, find the 3×3 rotation matrix `R` that
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//! minimises `Σᵢ ‖R·aᵢ − bᵢ‖²`. Scale is always reported as `1.0` (rigid body
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//! only). Uses an SVD of the cross-covariance matrix under the hood.
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//! - **Umeyama** extends Kabsch with a uniform scale factor — the same SVD core,
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//! same cloud align cleanly.
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extern "C" {
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fn nk_rmsd_f32(
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a_centroid: *mut f32,
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rotation: *mut f32,
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scale: *mut f32,
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result: *mut f64,
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);
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fn nk_kabsch_f64(
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+
a: *const f64,
|
|
86
|
+
b: *const f64,
|
|
87
|
+
n: usize,
|
|
88
|
+
a_centroid: *mut f64,
|
|
89
|
+
b_centroid: *mut f64,
|
|
90
|
+
rotation: *mut f64,
|
|
91
|
+
scale: *mut f64,
|
|
92
|
+
result: *mut f64,
|
|
93
|
+
);
|
|
94
|
+
fn nk_kabsch_f16(
|
|
95
|
+
a: *const u16,
|
|
96
|
+
b: *const u16,
|
|
97
|
+
n: usize,
|
|
98
|
+
a_centroid: *mut f32,
|
|
99
|
+
b_centroid: *mut f32,
|
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100
|
+
rotation: *mut f32,
|
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101
|
+
scale: *mut f32,
|
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102
|
+
result: *mut f32,
|
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103
|
+
);
|
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104
|
+
fn nk_kabsch_bf16(
|
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105
|
+
a: *const u16,
|
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106
|
+
b: *const u16,
|
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107
|
+
n: usize,
|
|
108
|
+
a_centroid: *mut f32,
|
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109
|
+
b_centroid: *mut f32,
|
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110
|
+
rotation: *mut f32,
|
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111
|
+
scale: *mut f32,
|
|
112
|
+
result: *mut f32,
|
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113
|
+
);
|
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114
|
+
fn nk_umeyama_f32(
|
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115
|
+
a: *const f32,
|
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116
|
+
b: *const f32,
|
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117
|
+
n: usize,
|
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118
|
+
a_centroid: *mut f32,
|
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119
|
+
b_centroid: *mut f32,
|
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120
|
+
rotation: *mut f32,
|
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121
|
+
scale: *mut f32,
|
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122
|
+
result: *mut f64,
|
|
123
|
+
);
|
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124
|
+
fn nk_umeyama_f64(
|
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125
|
+
a: *const f64,
|
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126
|
+
b: *const f64,
|
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127
|
+
n: usize,
|
|
128
|
+
a_centroid: *mut f64,
|
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129
|
+
b_centroid: *mut f64,
|
|
130
|
+
rotation: *mut f64,
|
|
131
|
+
scale: *mut f64,
|
|
132
|
+
result: *mut f64,
|
|
133
|
+
);
|
|
134
|
+
fn nk_umeyama_f16(
|
|
135
|
+
a: *const u16,
|
|
136
|
+
b: *const u16,
|
|
137
|
+
n: usize,
|
|
138
|
+
a_centroid: *mut f32,
|
|
139
|
+
b_centroid: *mut f32,
|
|
140
|
+
rotation: *mut f32,
|
|
141
|
+
scale: *mut f32,
|
|
142
|
+
result: *mut f32,
|
|
143
|
+
);
|
|
144
|
+
fn nk_umeyama_bf16(
|
|
145
|
+
a: *const u16,
|
|
146
|
+
b: *const u16,
|
|
147
|
+
n: usize,
|
|
148
|
+
a_centroid: *mut f32,
|
|
149
|
+
b_centroid: *mut f32,
|
|
150
|
+
rotation: *mut f32,
|
|
151
|
+
scale: *mut f32,
|
|
152
|
+
result: *mut f32,
|
|
153
|
+
);
|
|
154
|
+
}
|
|
155
|
+
|
|
156
|
+
/// Result of mesh alignment operations (RMSD, Kabsch, Umeyama).
|
|
157
|
+
///
|
|
158
|
+
/// Contains the rigid-body transformation (rotation, scale, translation)
|
|
159
|
+
/// that best aligns point cloud A onto point cloud B, along with the
|
|
160
|
+
/// root-mean-square deviation of the aligned points.
|
|
161
|
+
#[derive(Debug, Clone, Copy, PartialEq)]
|
|
162
|
+
pub struct MeshAlignmentResult<TTransform, TMetric> {
|
|
163
|
+
/// 3×3 rotation matrix in row-major order.
|
|
164
|
+
pub rotation_matrix: [TTransform; 9],
|
|
165
|
+
/// Uniform scale factor (1.0 for Kabsch, free for Umeyama).
|
|
166
|
+
pub scale: TTransform,
|
|
167
|
+
/// Root-mean-square deviation after alignment.
|
|
168
|
+
pub rmsd: TMetric,
|
|
169
|
+
/// Centroid of point cloud A before alignment.
|
|
170
|
+
pub a_centroid: [TTransform; 3],
|
|
171
|
+
/// Centroid of point cloud B (target).
|
|
172
|
+
pub b_centroid: [TTransform; 3],
|
|
173
|
+
}
|
|
174
|
+
|
|
175
|
+
impl<TMetric> MeshAlignmentResult<f64, TMetric> {
|
|
176
|
+
#[inline]
|
|
177
|
+
pub fn transform_point(&self, point: [f64; 3]) -> [f64; 3] {
|
|
178
|
+
let centered = [
|
|
179
|
+
point[0] - self.a_centroid[0],
|
|
180
|
+
point[1] - self.a_centroid[1],
|
|
181
|
+
point[2] - self.a_centroid[2],
|
|
182
|
+
];
|
|
183
|
+
let rotation_matrix = &self.rotation_matrix;
|
|
184
|
+
[
|
|
185
|
+
self.scale
|
|
186
|
+
* (rotation_matrix[0] * centered[0]
|
|
187
|
+
+ rotation_matrix[1] * centered[1]
|
|
188
|
+
+ rotation_matrix[2] * centered[2])
|
|
189
|
+
+ self.b_centroid[0],
|
|
190
|
+
self.scale
|
|
191
|
+
* (rotation_matrix[3] * centered[0]
|
|
192
|
+
+ rotation_matrix[4] * centered[1]
|
|
193
|
+
+ rotation_matrix[5] * centered[2])
|
|
194
|
+
+ self.b_centroid[1],
|
|
195
|
+
self.scale
|
|
196
|
+
* (rotation_matrix[6] * centered[0]
|
|
197
|
+
+ rotation_matrix[7] * centered[1]
|
|
198
|
+
+ rotation_matrix[8] * centered[2])
|
|
199
|
+
+ self.b_centroid[2],
|
|
200
|
+
]
|
|
201
|
+
}
|
|
202
|
+
|
|
203
|
+
#[cfg(feature = "std")]
|
|
204
|
+
pub fn transform_points(&self, points: &[[f64; 3]]) -> Vec<[f64; 3]> {
|
|
205
|
+
points.iter().map(|&p| self.transform_point(p)).collect()
|
|
206
|
+
}
|
|
207
|
+
}
|
|
208
|
+
|
|
209
|
+
impl<TMetric> MeshAlignmentResult<f32, TMetric> {
|
|
210
|
+
#[inline]
|
|
211
|
+
pub fn transform_point(&self, point: [f32; 3]) -> [f32; 3] {
|
|
212
|
+
let centered = [
|
|
213
|
+
point[0] - self.a_centroid[0],
|
|
214
|
+
point[1] - self.a_centroid[1],
|
|
215
|
+
point[2] - self.a_centroid[2],
|
|
216
|
+
];
|
|
217
|
+
let rotation_matrix = &self.rotation_matrix;
|
|
218
|
+
[
|
|
219
|
+
self.scale
|
|
220
|
+
* (rotation_matrix[0] * centered[0]
|
|
221
|
+
+ rotation_matrix[1] * centered[1]
|
|
222
|
+
+ rotation_matrix[2] * centered[2])
|
|
223
|
+
+ self.b_centroid[0],
|
|
224
|
+
self.scale
|
|
225
|
+
* (rotation_matrix[3] * centered[0]
|
|
226
|
+
+ rotation_matrix[4] * centered[1]
|
|
227
|
+
+ rotation_matrix[5] * centered[2])
|
|
228
|
+
+ self.b_centroid[1],
|
|
229
|
+
self.scale
|
|
230
|
+
* (rotation_matrix[6] * centered[0]
|
|
231
|
+
+ rotation_matrix[7] * centered[1]
|
|
232
|
+
+ rotation_matrix[8] * centered[2])
|
|
233
|
+
+ self.b_centroid[2],
|
|
234
|
+
]
|
|
235
|
+
}
|
|
236
|
+
|
|
237
|
+
#[cfg(feature = "std")]
|
|
238
|
+
pub fn transform_points(&self, points: &[[f32; 3]]) -> Vec<[f32; 3]> {
|
|
239
|
+
points.iter().map(|&p| self.transform_point(p)).collect()
|
|
240
|
+
}
|
|
241
|
+
}
|
|
242
|
+
|
|
243
|
+
/// Mesh alignment operations for 3D point clouds.
|
|
244
|
+
pub trait MeshAlignment: Sized {
|
|
245
|
+
type Transform: Default + Copy;
|
|
246
|
+
type Metric: Default + Copy;
|
|
247
|
+
|
|
248
|
+
/// Root-mean-square deviation between two point-for-point correspondent
|
|
249
|
+
/// clouds, without solving for a transform. Returns `None` if the lengths
|
|
250
|
+
/// differ or are below the 3-point minimum.
|
|
251
|
+
fn rmsd(
|
|
252
|
+
a: &[[Self; 3]],
|
|
253
|
+
b: &[[Self; 3]],
|
|
254
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>>;
|
|
255
|
+
|
|
256
|
+
/// Kabsch rigid-body alignment: recovers the best-fit 3×3 rotation matrix
|
|
257
|
+
/// (no scaling) that aligns `a` onto `b`, plus the residual RMSD. The
|
|
258
|
+
/// returned struct's `scale` is always `1.0` by construction.
|
|
259
|
+
///
|
|
260
|
+
/// Returns `None` if `a.len() != b.len()` or if either cloud has fewer than
|
|
261
|
+
/// three points (degenerate SVD).
|
|
262
|
+
///
|
|
263
|
+
/// # Examples
|
|
264
|
+
///
|
|
265
|
+
/// ```
|
|
266
|
+
/// use numkong::MeshAlignment;
|
|
267
|
+
/// let reference: &[[f64; 3]] = &[
|
|
268
|
+
/// [0.0, 0.0, 0.0],
|
|
269
|
+
/// [1.0, 0.0, 0.0],
|
|
270
|
+
/// [0.0, 1.0, 0.0],
|
|
271
|
+
/// [0.0, 0.0, 1.0],
|
|
272
|
+
/// ];
|
|
273
|
+
/// // Aligning a cloud to itself yields identity rotation and zero RMSD.
|
|
274
|
+
/// let fit = f64::kabsch(reference, reference).unwrap();
|
|
275
|
+
/// assert!((fit.scale - 1.0).abs() < 1e-9);
|
|
276
|
+
/// assert!(fit.rmsd.abs() < 1e-9);
|
|
277
|
+
/// ```
|
|
278
|
+
fn kabsch(
|
|
279
|
+
a: &[[Self; 3]],
|
|
280
|
+
b: &[[Self; 3]],
|
|
281
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>>;
|
|
282
|
+
|
|
283
|
+
/// Umeyama similarity alignment: like Kabsch but also recovers an optimal
|
|
284
|
+
/// uniform scale factor `s > 0`. Useful when the two clouds are related by
|
|
285
|
+
/// rotation **and** scaling.
|
|
286
|
+
fn umeyama(
|
|
287
|
+
a: &[[Self; 3]],
|
|
288
|
+
b: &[[Self; 3]],
|
|
289
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>>;
|
|
290
|
+
}
|
|
291
|
+
|
|
292
|
+
impl MeshAlignment for f64 {
|
|
293
|
+
type Transform = f64;
|
|
294
|
+
type Metric = f64;
|
|
295
|
+
|
|
296
|
+
fn rmsd(
|
|
297
|
+
a: &[[Self; 3]],
|
|
298
|
+
b: &[[Self; 3]],
|
|
299
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
300
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
301
|
+
return None;
|
|
302
|
+
}
|
|
303
|
+
let mut result = MeshAlignmentResult {
|
|
304
|
+
rotation_matrix: [0.0; 9],
|
|
305
|
+
scale: 0.0,
|
|
306
|
+
rmsd: 0.0,
|
|
307
|
+
a_centroid: [0.0; 3],
|
|
308
|
+
b_centroid: [0.0; 3],
|
|
309
|
+
};
|
|
310
|
+
unsafe {
|
|
311
|
+
nk_rmsd_f64(
|
|
312
|
+
a.as_ptr() as *const f64,
|
|
313
|
+
b.as_ptr() as *const f64,
|
|
314
|
+
a.len(),
|
|
315
|
+
result.a_centroid.as_mut_ptr(),
|
|
316
|
+
result.b_centroid.as_mut_ptr(),
|
|
317
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
318
|
+
&mut result.scale,
|
|
319
|
+
&mut result.rmsd,
|
|
320
|
+
)
|
|
321
|
+
};
|
|
322
|
+
Some(result)
|
|
323
|
+
}
|
|
324
|
+
|
|
325
|
+
fn kabsch(
|
|
326
|
+
a: &[[Self; 3]],
|
|
327
|
+
b: &[[Self; 3]],
|
|
328
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
329
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
330
|
+
return None;
|
|
331
|
+
}
|
|
332
|
+
let mut result = MeshAlignmentResult {
|
|
333
|
+
rotation_matrix: [0.0; 9],
|
|
334
|
+
scale: 0.0,
|
|
335
|
+
rmsd: 0.0,
|
|
336
|
+
a_centroid: [0.0; 3],
|
|
337
|
+
b_centroid: [0.0; 3],
|
|
338
|
+
};
|
|
339
|
+
unsafe {
|
|
340
|
+
nk_kabsch_f64(
|
|
341
|
+
a.as_ptr() as *const f64,
|
|
342
|
+
b.as_ptr() as *const f64,
|
|
343
|
+
a.len(),
|
|
344
|
+
result.a_centroid.as_mut_ptr(),
|
|
345
|
+
result.b_centroid.as_mut_ptr(),
|
|
346
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
347
|
+
&mut result.scale,
|
|
348
|
+
&mut result.rmsd,
|
|
349
|
+
)
|
|
350
|
+
};
|
|
351
|
+
Some(result)
|
|
352
|
+
}
|
|
353
|
+
|
|
354
|
+
fn umeyama(
|
|
355
|
+
a: &[[Self; 3]],
|
|
356
|
+
b: &[[Self; 3]],
|
|
357
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
358
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
359
|
+
return None;
|
|
360
|
+
}
|
|
361
|
+
let mut result = MeshAlignmentResult {
|
|
362
|
+
rotation_matrix: [0.0; 9],
|
|
363
|
+
scale: 0.0,
|
|
364
|
+
rmsd: 0.0,
|
|
365
|
+
a_centroid: [0.0; 3],
|
|
366
|
+
b_centroid: [0.0; 3],
|
|
367
|
+
};
|
|
368
|
+
unsafe {
|
|
369
|
+
nk_umeyama_f64(
|
|
370
|
+
a.as_ptr() as *const f64,
|
|
371
|
+
b.as_ptr() as *const f64,
|
|
372
|
+
a.len(),
|
|
373
|
+
result.a_centroid.as_mut_ptr(),
|
|
374
|
+
result.b_centroid.as_mut_ptr(),
|
|
375
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
376
|
+
&mut result.scale,
|
|
377
|
+
&mut result.rmsd,
|
|
378
|
+
)
|
|
379
|
+
};
|
|
380
|
+
Some(result)
|
|
381
|
+
}
|
|
382
|
+
}
|
|
383
|
+
|
|
384
|
+
impl MeshAlignment for f32 {
|
|
385
|
+
type Transform = f32;
|
|
386
|
+
type Metric = f64;
|
|
387
|
+
|
|
388
|
+
fn rmsd(
|
|
389
|
+
a: &[[Self; 3]],
|
|
390
|
+
b: &[[Self; 3]],
|
|
391
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
392
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
393
|
+
return None;
|
|
394
|
+
}
|
|
395
|
+
let mut result = MeshAlignmentResult {
|
|
396
|
+
rotation_matrix: [0.0; 9],
|
|
397
|
+
scale: 0.0,
|
|
398
|
+
rmsd: 0.0,
|
|
399
|
+
a_centroid: [0.0; 3],
|
|
400
|
+
b_centroid: [0.0; 3],
|
|
401
|
+
};
|
|
402
|
+
unsafe {
|
|
403
|
+
nk_rmsd_f32(
|
|
404
|
+
a.as_ptr() as *const f32,
|
|
405
|
+
b.as_ptr() as *const f32,
|
|
406
|
+
a.len(),
|
|
407
|
+
result.a_centroid.as_mut_ptr(),
|
|
408
|
+
result.b_centroid.as_mut_ptr(),
|
|
409
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
410
|
+
&mut result.scale,
|
|
411
|
+
&mut result.rmsd,
|
|
412
|
+
)
|
|
413
|
+
};
|
|
414
|
+
Some(result)
|
|
415
|
+
}
|
|
416
|
+
|
|
417
|
+
fn kabsch(
|
|
418
|
+
a: &[[Self; 3]],
|
|
419
|
+
b: &[[Self; 3]],
|
|
420
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
421
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
422
|
+
return None;
|
|
423
|
+
}
|
|
424
|
+
let mut result = MeshAlignmentResult {
|
|
425
|
+
rotation_matrix: [0.0; 9],
|
|
426
|
+
scale: 0.0,
|
|
427
|
+
rmsd: 0.0,
|
|
428
|
+
a_centroid: [0.0; 3],
|
|
429
|
+
b_centroid: [0.0; 3],
|
|
430
|
+
};
|
|
431
|
+
unsafe {
|
|
432
|
+
nk_kabsch_f32(
|
|
433
|
+
a.as_ptr() as *const f32,
|
|
434
|
+
b.as_ptr() as *const f32,
|
|
435
|
+
a.len(),
|
|
436
|
+
result.a_centroid.as_mut_ptr(),
|
|
437
|
+
result.b_centroid.as_mut_ptr(),
|
|
438
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
439
|
+
&mut result.scale,
|
|
440
|
+
&mut result.rmsd,
|
|
441
|
+
)
|
|
442
|
+
};
|
|
443
|
+
Some(result)
|
|
444
|
+
}
|
|
445
|
+
|
|
446
|
+
fn umeyama(
|
|
447
|
+
a: &[[Self; 3]],
|
|
448
|
+
b: &[[Self; 3]],
|
|
449
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
450
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
451
|
+
return None;
|
|
452
|
+
}
|
|
453
|
+
let mut result = MeshAlignmentResult {
|
|
454
|
+
rotation_matrix: [0.0; 9],
|
|
455
|
+
scale: 0.0,
|
|
456
|
+
rmsd: 0.0,
|
|
457
|
+
a_centroid: [0.0; 3],
|
|
458
|
+
b_centroid: [0.0; 3],
|
|
459
|
+
};
|
|
460
|
+
unsafe {
|
|
461
|
+
nk_umeyama_f32(
|
|
462
|
+
a.as_ptr() as *const f32,
|
|
463
|
+
b.as_ptr() as *const f32,
|
|
464
|
+
a.len(),
|
|
465
|
+
result.a_centroid.as_mut_ptr(),
|
|
466
|
+
result.b_centroid.as_mut_ptr(),
|
|
467
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
468
|
+
&mut result.scale,
|
|
469
|
+
&mut result.rmsd,
|
|
470
|
+
)
|
|
471
|
+
};
|
|
472
|
+
Some(result)
|
|
473
|
+
}
|
|
474
|
+
}
|
|
475
|
+
|
|
476
|
+
impl MeshAlignment for f16 {
|
|
477
|
+
type Transform = f32;
|
|
478
|
+
type Metric = f32;
|
|
479
|
+
|
|
480
|
+
fn rmsd(
|
|
481
|
+
a: &[[Self; 3]],
|
|
482
|
+
b: &[[Self; 3]],
|
|
483
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
484
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
485
|
+
return None;
|
|
486
|
+
}
|
|
487
|
+
let mut result = MeshAlignmentResult {
|
|
488
|
+
rotation_matrix: [0.0; 9],
|
|
489
|
+
scale: 0.0,
|
|
490
|
+
rmsd: 0.0,
|
|
491
|
+
a_centroid: [0.0; 3],
|
|
492
|
+
b_centroid: [0.0; 3],
|
|
493
|
+
};
|
|
494
|
+
unsafe {
|
|
495
|
+
nk_rmsd_f16(
|
|
496
|
+
a.as_ptr() as *const u16,
|
|
497
|
+
b.as_ptr() as *const u16,
|
|
498
|
+
a.len(),
|
|
499
|
+
result.a_centroid.as_mut_ptr(),
|
|
500
|
+
result.b_centroid.as_mut_ptr(),
|
|
501
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
502
|
+
&mut result.scale,
|
|
503
|
+
&mut result.rmsd,
|
|
504
|
+
)
|
|
505
|
+
};
|
|
506
|
+
Some(result)
|
|
507
|
+
}
|
|
508
|
+
|
|
509
|
+
fn kabsch(
|
|
510
|
+
a: &[[Self; 3]],
|
|
511
|
+
b: &[[Self; 3]],
|
|
512
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
513
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
514
|
+
return None;
|
|
515
|
+
}
|
|
516
|
+
let mut result = MeshAlignmentResult {
|
|
517
|
+
rotation_matrix: [0.0; 9],
|
|
518
|
+
scale: 0.0,
|
|
519
|
+
rmsd: 0.0,
|
|
520
|
+
a_centroid: [0.0; 3],
|
|
521
|
+
b_centroid: [0.0; 3],
|
|
522
|
+
};
|
|
523
|
+
unsafe {
|
|
524
|
+
nk_kabsch_f16(
|
|
525
|
+
a.as_ptr() as *const u16,
|
|
526
|
+
b.as_ptr() as *const u16,
|
|
527
|
+
a.len(),
|
|
528
|
+
result.a_centroid.as_mut_ptr(),
|
|
529
|
+
result.b_centroid.as_mut_ptr(),
|
|
530
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
531
|
+
&mut result.scale,
|
|
532
|
+
&mut result.rmsd,
|
|
533
|
+
)
|
|
534
|
+
};
|
|
535
|
+
Some(result)
|
|
536
|
+
}
|
|
537
|
+
|
|
538
|
+
fn umeyama(
|
|
539
|
+
a: &[[Self; 3]],
|
|
540
|
+
b: &[[Self; 3]],
|
|
541
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
542
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
543
|
+
return None;
|
|
544
|
+
}
|
|
545
|
+
let mut result = MeshAlignmentResult {
|
|
546
|
+
rotation_matrix: [0.0; 9],
|
|
547
|
+
scale: 0.0,
|
|
548
|
+
rmsd: 0.0,
|
|
549
|
+
a_centroid: [0.0; 3],
|
|
550
|
+
b_centroid: [0.0; 3],
|
|
551
|
+
};
|
|
552
|
+
unsafe {
|
|
553
|
+
nk_umeyama_f16(
|
|
554
|
+
a.as_ptr() as *const u16,
|
|
555
|
+
b.as_ptr() as *const u16,
|
|
556
|
+
a.len(),
|
|
557
|
+
result.a_centroid.as_mut_ptr(),
|
|
558
|
+
result.b_centroid.as_mut_ptr(),
|
|
559
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
560
|
+
&mut result.scale,
|
|
561
|
+
&mut result.rmsd,
|
|
562
|
+
)
|
|
563
|
+
};
|
|
564
|
+
Some(result)
|
|
565
|
+
}
|
|
566
|
+
}
|
|
567
|
+
|
|
568
|
+
impl MeshAlignment for bf16 {
|
|
569
|
+
type Transform = f32;
|
|
570
|
+
type Metric = f32;
|
|
571
|
+
|
|
572
|
+
fn rmsd(
|
|
573
|
+
a: &[[Self; 3]],
|
|
574
|
+
b: &[[Self; 3]],
|
|
575
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
576
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
577
|
+
return None;
|
|
578
|
+
}
|
|
579
|
+
let mut result = MeshAlignmentResult {
|
|
580
|
+
rotation_matrix: [0.0; 9],
|
|
581
|
+
scale: 0.0,
|
|
582
|
+
rmsd: 0.0,
|
|
583
|
+
a_centroid: [0.0; 3],
|
|
584
|
+
b_centroid: [0.0; 3],
|
|
585
|
+
};
|
|
586
|
+
unsafe {
|
|
587
|
+
nk_rmsd_bf16(
|
|
588
|
+
a.as_ptr() as *const u16,
|
|
589
|
+
b.as_ptr() as *const u16,
|
|
590
|
+
a.len(),
|
|
591
|
+
result.a_centroid.as_mut_ptr(),
|
|
592
|
+
result.b_centroid.as_mut_ptr(),
|
|
593
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
594
|
+
&mut result.scale,
|
|
595
|
+
&mut result.rmsd,
|
|
596
|
+
)
|
|
597
|
+
};
|
|
598
|
+
Some(result)
|
|
599
|
+
}
|
|
600
|
+
|
|
601
|
+
fn kabsch(
|
|
602
|
+
a: &[[Self; 3]],
|
|
603
|
+
b: &[[Self; 3]],
|
|
604
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
605
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
606
|
+
return None;
|
|
607
|
+
}
|
|
608
|
+
let mut result = MeshAlignmentResult {
|
|
609
|
+
rotation_matrix: [0.0; 9],
|
|
610
|
+
scale: 0.0,
|
|
611
|
+
rmsd: 0.0,
|
|
612
|
+
a_centroid: [0.0; 3],
|
|
613
|
+
b_centroid: [0.0; 3],
|
|
614
|
+
};
|
|
615
|
+
unsafe {
|
|
616
|
+
nk_kabsch_bf16(
|
|
617
|
+
a.as_ptr() as *const u16,
|
|
618
|
+
b.as_ptr() as *const u16,
|
|
619
|
+
a.len(),
|
|
620
|
+
result.a_centroid.as_mut_ptr(),
|
|
621
|
+
result.b_centroid.as_mut_ptr(),
|
|
622
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
623
|
+
&mut result.scale,
|
|
624
|
+
&mut result.rmsd,
|
|
625
|
+
)
|
|
626
|
+
};
|
|
627
|
+
Some(result)
|
|
628
|
+
}
|
|
629
|
+
|
|
630
|
+
fn umeyama(
|
|
631
|
+
a: &[[Self; 3]],
|
|
632
|
+
b: &[[Self; 3]],
|
|
633
|
+
) -> Option<MeshAlignmentResult<Self::Transform, Self::Metric>> {
|
|
634
|
+
if a.len() != b.len() || a.len() < 3 {
|
|
635
|
+
return None;
|
|
636
|
+
}
|
|
637
|
+
let mut result = MeshAlignmentResult {
|
|
638
|
+
rotation_matrix: [0.0; 9],
|
|
639
|
+
scale: 0.0,
|
|
640
|
+
rmsd: 0.0,
|
|
641
|
+
a_centroid: [0.0; 3],
|
|
642
|
+
b_centroid: [0.0; 3],
|
|
643
|
+
};
|
|
644
|
+
unsafe {
|
|
645
|
+
nk_umeyama_bf16(
|
|
646
|
+
a.as_ptr() as *const u16,
|
|
647
|
+
b.as_ptr() as *const u16,
|
|
648
|
+
a.len(),
|
|
649
|
+
result.a_centroid.as_mut_ptr(),
|
|
650
|
+
result.b_centroid.as_mut_ptr(),
|
|
651
|
+
result.rotation_matrix.as_mut_ptr(),
|
|
652
|
+
&mut result.scale,
|
|
653
|
+
&mut result.rmsd,
|
|
654
|
+
)
|
|
655
|
+
};
|
|
656
|
+
Some(result)
|
|
657
|
+
}
|
|
658
|
+
}
|
|
659
|
+
|
|
660
|
+
#[cfg(test)]
|
|
661
|
+
mod tests {
|
|
662
|
+
use super::*;
|
|
663
|
+
use crate::types::{assert_close, FloatLike, NumberLike, TestableType};
|
|
664
|
+
/// Convert a point cloud from f32 to Scalar.
|
|
665
|
+
pub(crate) fn convert_cloud<Scalar: FloatLike>(cloud: &[[f32; 3]]) -> Vec<[Scalar; 3]> {
|
|
666
|
+
cloud
|
|
667
|
+
.iter()
|
|
668
|
+
.map(|p| {
|
|
669
|
+
[
|
|
670
|
+
Scalar::from_f32(p[0]),
|
|
671
|
+
Scalar::from_f32(p[1]),
|
|
672
|
+
Scalar::from_f32(p[2]),
|
|
673
|
+
]
|
|
674
|
+
})
|
|
675
|
+
.collect()
|
|
676
|
+
}
|
|
677
|
+
|
|
678
|
+
fn check_kabsch_identical<Scalar>(cloud: &[[f32; 3]])
|
|
679
|
+
where
|
|
680
|
+
Scalar: FloatLike + TestableType + MeshAlignment,
|
|
681
|
+
Scalar::Transform: NumberLike,
|
|
682
|
+
Scalar::Metric: FloatLike,
|
|
683
|
+
{
|
|
684
|
+
let cloud_t = convert_cloud::<Scalar>(cloud);
|
|
685
|
+
let result = Scalar::kabsch(&cloud_t, &cloud_t).unwrap();
|
|
686
|
+
let tol = Scalar::atol() + Scalar::rtol();
|
|
687
|
+
assert_close(
|
|
688
|
+
NumberLike::to_f64(result.scale),
|
|
689
|
+
1.0,
|
|
690
|
+
tol,
|
|
691
|
+
0.0,
|
|
692
|
+
&format!("kabsch<{}> scale", core::any::type_name::<Scalar>()),
|
|
693
|
+
);
|
|
694
|
+
assert_close(
|
|
695
|
+
NumberLike::to_f64(result.rmsd),
|
|
696
|
+
0.0,
|
|
697
|
+
tol,
|
|
698
|
+
0.0,
|
|
699
|
+
&format!("kabsch<{}> rmsd", core::any::type_name::<Scalar>()),
|
|
700
|
+
);
|
|
701
|
+
}
|
|
702
|
+
|
|
703
|
+
fn check_umeyama_scaled<Scalar>(cloud: &[[f32; 3]], scaled: &[[f32; 3]])
|
|
704
|
+
where
|
|
705
|
+
Scalar: FloatLike + TestableType + MeshAlignment,
|
|
706
|
+
Scalar::Transform: NumberLike,
|
|
707
|
+
Scalar::Metric: FloatLike,
|
|
708
|
+
{
|
|
709
|
+
let cloud_t = convert_cloud::<Scalar>(cloud);
|
|
710
|
+
let scaled_t = convert_cloud::<Scalar>(scaled);
|
|
711
|
+
let result = Scalar::umeyama(&cloud_t, &scaled_t).unwrap();
|
|
712
|
+
let scale = NumberLike::to_f64(result.scale);
|
|
713
|
+
assert!(
|
|
714
|
+
scale > 1.0 && scale < 3.0,
|
|
715
|
+
"umeyama<{}> scale: expected ~2.0, got {}",
|
|
716
|
+
core::any::type_name::<Scalar>(),
|
|
717
|
+
scale
|
|
718
|
+
);
|
|
719
|
+
}
|
|
720
|
+
|
|
721
|
+
fn check_rmsd_identical<Scalar>(cloud: &[[f32; 3]])
|
|
722
|
+
where
|
|
723
|
+
Scalar: FloatLike + TestableType + MeshAlignment,
|
|
724
|
+
Scalar::Transform: NumberLike,
|
|
725
|
+
Scalar::Metric: FloatLike,
|
|
726
|
+
{
|
|
727
|
+
let cloud_t = convert_cloud::<Scalar>(cloud);
|
|
728
|
+
let result = Scalar::rmsd(&cloud_t, &cloud_t).unwrap();
|
|
729
|
+
let tol = Scalar::atol() + Scalar::rtol();
|
|
730
|
+
assert_close(
|
|
731
|
+
NumberLike::to_f64(result.scale),
|
|
732
|
+
1.0,
|
|
733
|
+
tol,
|
|
734
|
+
0.0,
|
|
735
|
+
&format!("rmsd<{}> scale", core::any::type_name::<Scalar>()),
|
|
736
|
+
);
|
|
737
|
+
assert_close(
|
|
738
|
+
NumberLike::to_f64(result.rmsd),
|
|
739
|
+
0.0,
|
|
740
|
+
tol,
|
|
741
|
+
0.0,
|
|
742
|
+
&format!("rmsd<{}> rmsd", core::any::type_name::<Scalar>()),
|
|
743
|
+
);
|
|
744
|
+
}
|
|
745
|
+
|
|
746
|
+
#[test]
|
|
747
|
+
fn mesh_alignment() {
|
|
748
|
+
let cloud: &[[f32; 3]] = &[
|
|
749
|
+
[0.0, 0.0, 0.0],
|
|
750
|
+
[1.0, 0.0, 0.0],
|
|
751
|
+
[0.0, 2.0, 0.0],
|
|
752
|
+
[0.0, 0.0, 3.0],
|
|
753
|
+
];
|
|
754
|
+
let scaled: &[[f32; 3]] = &[
|
|
755
|
+
[0.0, 0.0, 0.0],
|
|
756
|
+
[2.0, 0.0, 0.0],
|
|
757
|
+
[0.0, 4.0, 0.0],
|
|
758
|
+
[0.0, 0.0, 6.0],
|
|
759
|
+
];
|
|
760
|
+
let tri: &[[f32; 3]] = &[[1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0]];
|
|
761
|
+
|
|
762
|
+
// Kabsch — identical clouds
|
|
763
|
+
check_kabsch_identical::<f64>(cloud);
|
|
764
|
+
check_kabsch_identical::<f32>(cloud);
|
|
765
|
+
|
|
766
|
+
// Umeyama — 2x scaled
|
|
767
|
+
check_umeyama_scaled::<f64>(cloud, scaled);
|
|
768
|
+
check_umeyama_scaled::<f32>(cloud, scaled);
|
|
769
|
+
|
|
770
|
+
// RMSD — identical
|
|
771
|
+
check_rmsd_identical::<f64>(tri);
|
|
772
|
+
check_rmsd_identical::<f32>(tri);
|
|
773
|
+
}
|
|
774
|
+
|
|
775
|
+
#[test]
|
|
776
|
+
fn mesh_alignment_edge_cases() {
|
|
777
|
+
let tri: &[[f64; 3]] = &[[1.0, 0.0, 0.0], [0.0, 1.0, 0.0], [0.0, 0.0, 1.0]];
|
|
778
|
+
let pair: &[[f64; 3]] = &[[1.0, 0.0, 0.0], [0.0, 1.0, 0.0]];
|
|
779
|
+
|
|
780
|
+
// Length mismatch
|
|
781
|
+
assert!(f64::kabsch(tri, pair).is_none());
|
|
782
|
+
assert!(f64::rmsd(tri, pair).is_none());
|
|
783
|
+
assert!(f64::umeyama(tri, pair).is_none());
|
|
784
|
+
|
|
785
|
+
// Too few points
|
|
786
|
+
assert!(f64::kabsch(pair, pair).is_none());
|
|
787
|
+
|
|
788
|
+
// Kabsch on random-ish clouds: check outputs are finite and scale == 1.
|
|
789
|
+
// The underlying SVD solver (Jacobi, 16 fixed iterations) is only approximate,
|
|
790
|
+
// so we verify structural properties rather than exact transform recovery.
|
|
791
|
+
let cloud_a: &[[f64; 3]] = &[
|
|
792
|
+
[2.0, 0.0, 0.0],
|
|
793
|
+
[0.0, 2.0, 0.0],
|
|
794
|
+
[0.0, 0.0, 2.0],
|
|
795
|
+
[1.0, 1.0, 1.0],
|
|
796
|
+
[-1.0, 0.0, 1.0],
|
|
797
|
+
];
|
|
798
|
+
let cloud_b: &[[f64; 3]] = &[
|
|
799
|
+
[0.0, 2.0, 0.5],
|
|
800
|
+
[-2.0, 0.1, 0.0],
|
|
801
|
+
[0.3, 0.0, 2.0],
|
|
802
|
+
[-1.0, 1.2, 1.0],
|
|
803
|
+
[0.0, -1.0, 1.5],
|
|
804
|
+
];
|
|
805
|
+
let result = f64::kabsch(cloud_a, cloud_b).unwrap();
|
|
806
|
+
|
|
807
|
+
// Scale must be 1.0 (Kabsch is rigid, no scaling)
|
|
808
|
+
assert!(
|
|
809
|
+
(result.scale - 1.0).abs() < 1e-6,
|
|
810
|
+
"Expected scale ~1.0, got {}",
|
|
811
|
+
result.scale
|
|
812
|
+
);
|
|
813
|
+
// RMSD must be finite and non-negative
|
|
814
|
+
assert!(result.rmsd.is_finite() && result.rmsd >= 0.0);
|
|
815
|
+
// Rotation determinant must be ±1 (orthogonal matrix)
|
|
816
|
+
let rotation_matrix = &result.rotation_matrix;
|
|
817
|
+
let det = rotation_matrix[0]
|
|
818
|
+
* (rotation_matrix[4] * rotation_matrix[8] - rotation_matrix[5] * rotation_matrix[7])
|
|
819
|
+
- rotation_matrix[1]
|
|
820
|
+
* (rotation_matrix[3] * rotation_matrix[8]
|
|
821
|
+
- rotation_matrix[5] * rotation_matrix[6])
|
|
822
|
+
+ rotation_matrix[2]
|
|
823
|
+
* (rotation_matrix[3] * rotation_matrix[7]
|
|
824
|
+
- rotation_matrix[4] * rotation_matrix[6]);
|
|
825
|
+
assert!(
|
|
826
|
+
(det.abs() - 1.0).abs() < 0.01,
|
|
827
|
+
"Expected det(R) ~±1.0, got {}",
|
|
828
|
+
det
|
|
829
|
+
);
|
|
830
|
+
// Centroids must be finite
|
|
831
|
+
assert!(result.a_centroid.iter().all(|c| c.is_finite()));
|
|
832
|
+
assert!(result.b_centroid.iter().all(|c| c.is_finite()));
|
|
833
|
+
// transform_point must produce finite output
|
|
834
|
+
let transformed = result.transform_point([1.0, 2.0, 3.0]);
|
|
835
|
+
assert!(transformed.iter().all(|c| c.is_finite()));
|
|
836
|
+
}
|
|
837
|
+
}
|