ultra-builder-pro-cli 0.25.1 → 0.26.0

package/adapters/grok.js

@@ -1,1567 +1,241 @@
 'use strict';
 
-/** Build a Grok Build native Ultra Builder Pro plugin. */
-
 const fs = require('node:fs');
 const os = require('node:os');
 const path = require('node:path');
-const crypto = require('node:crypto');
 const { spawnSync } = require('node:child_process');
 
 const {
-  applyNativeDoctor,
-  buildMcpRuntime,
-} = require('./_shared/codex-assets.cjs');
+  copyHooks,
+  copySkills,
+  inspectPlugin,
+  markManaged,
+  publishManagedTrees,
+  removeManaged,
+  writePluginProvenance,
+} = require('./_shared/plugin-core.cjs');
 const {
-  copyTree,
+  captureAbsent,
   ensureDir,
   isManaged,
-  markManaged,
+  managedMetadata,
+  pruneCreatedEmpty,
   removeTree,
   writeAtomic,
 } = require('./_shared/file-ops.cjs');
-const {
-  parse: parseFrontmatter,
-  serialize: serializeFrontmatter,
-} = require('./_shared/frontmatter.cjs');
-const {
-  adaptInteractionGuidance,
-} = require('./_shared/interaction-contract.cjs');
-const provenance = require('./_shared/provenance.cjs');
-const {
-  CORE_PUBLIC_SKILLS,
-  WORKFLOW_HOOK_FILES,
-  skillPolicy,
-  skillsForRuntime,
-} = require('./_shared/runtime-assets.cjs');
 
 const PLUGIN_NAME = 'ultra-builder-pro';
-const MCP_SERVER_NAME = PLUGIN_NAME;
-const PROVENANCE_FILE = 'provenance.json';
-const COMMAND_NAMES = CORE_PUBLIC_SKILLS;
-const SOURCE_ROOT_PARTS = ['.ubp', 'plugin-sources', PLUGIN_NAME];
-const BACKUP_ROOT_PARTS = ['.ubp', 'backups'];
 
 function resolveTarget(ctx = {}) {
   if (ctx.configDir) return path.resolve(ctx.configDir);
-  const configuredHome = [
-    ctx.grokHome,
-    ctx.grokEnv?.GROK_HOME,
-    ctx.env?.GROK_HOME,
-    process.env.GROK_HOME,
-  ].find((candidate) => typeof candidate === 'string' && candidate.trim());
-  if (configuredHome) return path.resolve(configuredHome);
-  return path.join(ctx.homeDir || os.homedir(), '.grok');
-}
-
-function resolvePluginRoot(ctx = {}) {
-  return path.join(resolveTarget(ctx), 'plugins', PLUGIN_NAME);
+  const configured = ctx.grokHome || ctx.grokEnv?.GROK_HOME || ctx.env?.GROK_HOME || process.env.GROK_HOME;
+  return configured ? path.resolve(configured) : path.join(ctx.homeDir || os.homedir(), '.grok');
 }
 
 function resolveSourceRoot(ctx = {}) {
-  return path.join(resolveTarget(ctx), ...SOURCE_ROOT_PARTS);
+  return path.join(resolveTarget(ctx), '.ubp', 'plugin-sources', PLUGIN_NAME);
 }
 
-function resolveBackupRoot(ctx = {}) {
-  return path.join(resolveTarget(ctx), ...BACKUP_ROOT_PARTS);
+function resolvePluginRoot(ctx = {}) {
+  return path.join(resolveTarget(ctx), 'plugins', PLUGIN_NAME);
 }
 
 function resolveRepoRoot(ctx = {}) {
   return ctx.repoRoot || path.resolve(__dirname, '..');
 }
 
-function copySkills(repoRoot, pluginRoot) {
-  const copied = [];
-  for (const name of skillsForRuntime('grok')) {
-    const source = path.join(repoRoot, 'skills', name);
-    if (!fs.existsSync(path.join(source, 'SKILL.md'))) {
-      throw new Error(`missing allowlisted Grok skill: ${name}`);
-    }
-    const files = copyTree(source, path.join(pluginRoot, 'skills', name), {
-      transform(buffer, relative) {
-        if (!relative.endsWith('.md')) return buffer;
-        let text = adaptInteractionGuidance(buffer.toString('utf8'), 'grok');
-        if (name === 'ultra-review') {
-          text = text.replace(
-            /(?:the current host's native|the host-native) bounded-worker\s+mechanism/g,
-            'Grok Build subagents using the installed read-only agent definitions',
-          );
-        }
-        if (relative !== 'SKILL.md') return Buffer.from(text);
-        const { fm, body } = parseFrontmatter(text);
-        if (!fm) throw new Error(`missing frontmatter in Grok skill: ${name}`);
-        const policy = skillPolicy(name);
-        return Buffer.from(serializeFrontmatter({
-          name,
-          description: fm.description,
-          'user-invocable': policy.userInvocable,
-          ...(policy.userInvocable ? { 'disable-model-invocation': true } : {}),
-        }, body));
-      },
-    });
-    copied.push(...files.map((relative) => path.join(name, relative)));
-  }
-  return copied;
-}
-
-function copyCommands(repoRoot, pluginRoot) {
-  const copied = [];
-  for (const name of COMMAND_NAMES) {
-    const source = path.join(repoRoot, 'commands', `${name}.md`);
-    if (!fs.existsSync(source)) throw new Error(`missing Grok command: ${name}.md`);
-    const target = path.join(pluginRoot, 'commands', `${name}.md`);
-    const text = adaptInteractionGuidance(fs.readFileSync(source, 'utf8'), 'grok');
-    writeAtomic(target, text);
-    copied.push(`${name}.md`);
+function assertPluginScope(ctx = {}) {
+  if (ctx.scope === 'local' && !ctx.configDir) {
+    throw new Error('Grok plugins are user-scoped; use global scope or an isolated configDir');
   }
-  return copied;
 }
 
-function copyAgents(repoRoot, pluginRoot) {
-  const copied = [];
-  const sourceRoot = path.join(repoRoot, 'agents');
-  for (const file of fs.readdirSync(sourceRoot).filter((name) => name.endsWith('.md')).sort()) {
-    const { fm, body } = parseFrontmatter(
-      fs.readFileSync(path.join(sourceRoot, file), 'utf8'),
-    );
-    if (!fm?.name || !fm?.description) {
-      throw new Error(`invalid Grok agent frontmatter: ${file}`);
-    }
-    const next = { ...fm };
-    delete next.model;
-    delete next.maxTurns;
-    delete next.permissionMode;
-    delete next.mcpServers;
-    delete next.hooks;
-    next.mcpInheritance = 'all';
-    const instructions = [
-      'Use the immutable Worker Packet supplied by the parent. Echo its exact packet_digest.',
-      'Do not call Ultra MCP write tools or mutate another worker artifact.',
-      '',
-      adaptInteractionGuidance(body, 'grok').trim(),
-      '',
-    ].join('\n');
-    writeAtomic(
-      path.join(pluginRoot, 'agents', file),
-      serializeFrontmatter(next, instructions),
-    );
-    copied.push(file);
-  }
-  return copied;
-}
-
-function hookCommand(feature, ...args) {
+function hookCommand(name) {
   return {
     type: 'command',
-    command: [
-      'python3 "${GROK_PLUGIN_ROOT}/hooks/adapters/grok.py"',
-      JSON.stringify(feature),
-      ...args.map((arg) => JSON.stringify(arg)),
-    ].join(' '),
+    command: `python3 "\${GROK_PLUGIN_ROOT}/hooks/adapters/grok.py" ${JSON.stringify(name)}`,
     timeout: 10,
   };
 }
 
 function buildHooksManifest() {
   return {
-    description: [
-      'Ultra hooks are observational except for exact managed-file protection.',
-      'Grok ignores SessionStart/PostCompact stdout, so Skills read ultra.context explicitly.',
-    ].join(' '),
+    description: 'Ultra file-first context sensors and narrow effect protection.',
     hooks: {
-      SessionStart: [{
-        matcher: 'startup|resume|clear|compact',
-        hooks: [hookCommand('health_check.py')],
-      }],
-      PreToolUse: [{
-        matcher: 'Edit|Write|MultiEdit|search_replace|apply_patch',
-        hooks: [hookCommand('active_task_context.py')],
-      }],
-      PreCompact: [{
-        matcher: 'manual|auto',
-        hooks: [hookCommand('workflow_checkpoint.py')],
-      }],
-      Stop: [{
-        hooks: [hookCommand('pre_stop_check.py')],
-      }],
-      SubagentStart: [{
-        hooks: [hookCommand('subagent_tracker.py', 'start')],
-      }],
-      SubagentStop: [{
-        hooks: [hookCommand('subagent_tracker.py', 'stop')],
-      }],
+      SessionStart: [
+        { matcher: 'startup|resume|clear', hooks: [hookCommand('session_context.py')] },
+        { matcher: 'compact', hooks: [hookCommand('compact_context.py')] },
+      ],
+      PreToolUse: [
+        { matcher: 'Write|Edit|Grep|apply_patch', hooks: [hookCommand('mid_workflow_recall.py')] },
+        { matcher: 'Bash', hooks: [hookCommand('block_dangerous_commands.py')] },
+      ],
+      PostToolUse: [
+        { matcher: 'Write|Edit|apply_patch', hooks: [hookCommand('post_edit_guard.py')] },
+      ],
+      PreCompact: [{ matcher: 'manual|auto', hooks: [hookCommand('compact_context.py')] }],
     },
   };
 }
 
-function copyHooks(repoRoot, pluginRoot) {
-  const copied = [];
-  ensureDir(path.join(pluginRoot, 'hooks', 'adapters'));
-  for (const name of WORKFLOW_HOOK_FILES) {
-    const source = path.join(repoRoot, 'hooks', name);
-    if (!fs.existsSync(source)) throw new Error(`missing allowlisted Grok hook: ${name}`);
-    fs.copyFileSync(source, path.join(pluginRoot, 'hooks', name));
-    copied.push(name);
-  }
-  fs.copyFileSync(
-    path.join(repoRoot, 'hooks', 'adapters', 'grok.py'),
-    path.join(pluginRoot, 'hooks', 'adapters', 'grok.py'),
-  );
-  copied.push(path.join('adapters', 'grok.py'));
-  writeAtomic(
-    path.join(pluginRoot, 'hooks', 'hooks.json'),
-    `${JSON.stringify(buildHooksManifest(), null, 2)}\n`,
-  );
-  return copied;
-}
-
-function writeManifests(repoRoot, pluginRoot) {
+function buildStaging(repoRoot, staging, publishedRoot) {
+  const skills = copySkills({ runtime: 'grok', repoRoot, skillRoot: path.join(staging, 'skills') });
+  copyHooks({
+    runtime: 'grok', repoRoot, hookRoot: path.join(staging, 'hooks'),
+    hooksManifest: buildHooksManifest(),
+  });
   const pkg = JSON.parse(fs.readFileSync(path.join(repoRoot, 'package.json'), 'utf8'));
-  const repository = typeof pkg.repository === 'string'
-    ? pkg.repository.replace(/^git\+/, '').replace(/\.git$/, '')
-    : String(pkg.repository?.url || '').replace(/^git\+/, '').replace(/\.git$/, '');
-  writeAtomic(path.join(pluginRoot, 'plugin.json'), `${JSON.stringify({
+  writeAtomic(path.join(staging, 'plugin.json'), `${JSON.stringify({
     name: PLUGIN_NAME,
     version: pkg.version,
-    description: 'Grok Build native Ultra workflows, Worker Packets, observational hooks, and a project-local MCP safety kernel.',
-    author: { name: typeof pkg.author === 'string' ? pkg.author : 'Ultra Builder Pro contributors' },
+    description: 'File-first Ultra Builder Pro workflows for Grok Build.',
+    author: { name: pkg.author },
     homepage: pkg.homepage,
-    repository,
-    license: pkg.license || 'MIT',
+    repository: pkg.repository?.url || pkg.repository,
+    license: pkg.license,
   }, null, 2)}\n`);
-  const launcher = '${GROK_PLUGIN_ROOT}/runtime/launch.cjs';
-  writeAtomic(path.join(pluginRoot, '.mcp.json'), `${JSON.stringify({
-    mcpServers: {
-      [MCP_SERVER_NAME]: {
-        type: 'stdio',
-        command: process.platform === 'win32' ? 'node.exe' : '/usr/bin/env',
-        args: process.platform === 'win32' ? [launcher] : ['node', launcher],
-      },
-    },
-  }, null, 2)}\n`);
-}
-
-function grokFailure(code, message, details = {}) {
-  const error = new Error(message);
-  error.code = code;
-  error.details = details;
-  return error;
-}
-
-function resolveGrokBinary(ctx = {}) {
-  const executable = process.platform === 'win32' ? 'grok.exe' : 'grok';
-  if (ctx.grokBin) {
-    return fs.existsSync(ctx.grokBin) ? path.resolve(ctx.grokBin) : null;
-  }
-  const candidates = [
-    ctx.grokEnv?.GROK_BIN,
-    ctx.env?.GROK_BIN,
-    process.env.GROK_BIN,
-    path.join(resolveTarget(ctx), 'bin', executable),
-  ].filter(Boolean);
-  for (const candidate of candidates) {
-    if (fs.existsSync(candidate)) return path.resolve(candidate);
-  }
-  const probe = spawnSync(executable, ['--version'], {
-    encoding: 'utf8',
-    timeout: 10_000,
-    stdio: ['ignore', 'pipe', 'pipe'],
-  });
-  return probe.status === 0 ? executable : null;
-}
-
-function nativeEnvironment(ctx = {}) {
-  return {
-    ...process.env,
-    ...(ctx.env || {}),
-    ...(ctx.grokEnv || {}),
-    GROK_HOME: resolveTarget(ctx),
-  };
-}
-
-function runGrok(ctx, args, {
-  timeout = 60_000,
-  json = false,
-  allowFailure = false,
-} = {}) {
-  const binary = resolveGrokBinary(ctx);
-  if (!binary) {
-    throw grokFailure(
-      'GROK_CLI_UNAVAILABLE',
-      'Grok CLI is required for native plugin registration; install Grok Build or pass grokBin',
-    );
-  }
-  const result = spawnSync(binary, args, {
-    cwd: ctx.cwd || process.cwd(),
-    env: nativeEnvironment(ctx),
-    encoding: 'utf8',
-    timeout,
-    maxBuffer: 32 * 1024 * 1024,
-    stdio: ['ignore', 'pipe', 'pipe'],
-  });
-  if (result.error) throw result.error;
-  if (result.status !== 0 && !allowFailure) {
-    const detail = (result.stderr || result.stdout || '').trim();
-    throw grokFailure(
-      'GROK_CLI_COMMAND_FAILED',
-      `grok ${args.join(' ')} failed${detail ? `: ${detail}` : ''}`,
-      { args, status: result.status },
-    );
-  }
-  let payload = null;
-  if (json && result.status === 0) {
-    try {
-      payload = JSON.parse(result.stdout || 'null');
-    } catch (error) {
-      throw grokFailure(
-        'GROK_CLI_INVALID_JSON',
-        `grok ${args.join(' ')} returned invalid JSON: ${error.message}`,
-      );
-    }
-  }
-  return {
-    binary,
-    status: result.status,
-    stdout: result.stdout || '',
-    stderr: result.stderr || '',
-    payload,
-  };
-}
-
-function probeNativeCapabilities(ctx = {}) {
-  const binary = resolveGrokBinary(ctx);
-  if (!binary) return { status: 'unavailable', binary: null, capabilities: {} };
-  const commands = [
-    { key: 'plugin_install', args: ['plugin', 'install', '--help'], required: ['--trust'] },
-    { key: 'plugin_list', args: ['plugin', 'list', '--help'], required: ['--json'] },
-    { key: 'plugin_details', args: ['plugin', 'details', '--help'], required: [] },
-    { key: 'plugin_enable', args: ['plugin', 'enable', '--help'], required: [] },
-    {
-      key: 'plugin_uninstall',
-      args: ['plugin', 'uninstall', '--help'],
-      required: ['--confirm', '--keep-data'],
-    },
-    { key: 'inspect', args: ['inspect', '--help'], required: ['--json'] },
-    { key: 'mcp_doctor', args: ['mcp', 'doctor', '--help'], required: ['--json'] },
-  ];
-  const capabilities = {};
-  for (const command of commands) {
-    const result = runGrok(ctx, command.args, { timeout: 15_000 });
-    const output = `${result.stdout}\n${result.stderr}`;
-    const missing = command.required.filter((flag) => !output.includes(flag));
-    if (missing.length > 0) {
-      throw grokFailure(
-        'GROK_CLI_CAPABILITY_MISSING',
-        `installed Grok CLI does not expose ${command.key}: missing ${missing.join(', ')}`,
-        { command: command.args, missing },
-      );
-    }
-    capabilities[command.key] = true;
-  }
-  const version = runGrok(ctx, ['--version'], { timeout: 10_000 }).stdout.trim();
-  return { status: 'pass', binary, version, capabilities };
-}
-
-function validatePlugin(pluginRoot, ctx = {}) {
-  const capabilities = probeNativeCapabilities(ctx);
-  if (capabilities.status === 'unavailable') {
-    return { status: 'unavailable', binary: null };
-  }
-  const result = runGrok(ctx, ['plugin', 'validate', pluginRoot], { timeout: 30_000 });
-  return {
-    status: 'pass',
-    binary: result.binary,
-    output: result.stdout.trim(),
-    version: capabilities.version,
-  };
-}
-
-function pluginList(ctx = {}) {
-  const result = runGrok(ctx, ['plugin', 'list', '--json'], { json: true });
-  if (!Array.isArray(result.payload)) {
-    throw grokFailure('GROK_PLUGIN_LIST_INVALID', 'grok plugin list --json must return an array');
-  }
-  return result.payload;
-}
-
-function installedPlugin(ctx = {}) {
-  const matches = pluginList(ctx).filter((entry) => entry?.name === PLUGIN_NAME);
-  if (matches.length > 1) {
-    throw grokFailure(
-      'GROK_PLUGIN_REGISTRY_CONFLICT',
-      `Grok registered ${matches.length} Ultra Builder Pro plugin entries`,
-    );
-  }
-  const registered = matches[0] || null;
-  if (
-    registered
-    && (
-      registered.status !== 'installed'
-      || typeof registered.path !== 'string'
-      || !registered.path.trim()
-    )
-  ) {
-    throw grokFailure(
-      'GROK_PLUGIN_REGISTRY_INVALID',
-      'Grok returned an invalid Ultra Builder Pro registry entry',
-    );
-  }
-  return registered;
-}
-
-function parseActivationArray(section, key, file) {
-  const declaration = new RegExp(`(?:^|\\n)\\s*${key}\\s*=`, 'g');
-  const assignment = new RegExp(
-    `(?:^|\\n)\\s*${key}\\s*=\\s*(\\[[\\s\\S]*?\\])\\s*(?:#.*)?(?=\\n|$)`,
-    'g',
-  );
-  const declarations = [...section.matchAll(declaration)];
-  const assignments = [...section.matchAll(assignment)];
-  if (declarations.length === 0) return null;
-  if (declarations.length !== 1 || assignments.length !== 1) {
-    throw grokFailure(
-      'GROK_PLUGIN_ACTIVATION_REGISTRY_INVALID',
-      `Grok activation registry has an invalid plugins.${key} declaration: ${file}`,
-      { file, key },
-    );
-  }
-  let values;
-  try {
-    values = JSON.parse(assignments[0][1]);
-  } catch (error) {
-    throw grokFailure(
-      'GROK_PLUGIN_ACTIVATION_REGISTRY_INVALID',
-      `Grok activation registry has an unreadable plugins.${key} array: ${file}`,
-      { file, key, cause_code: error.code || null },
-    );
-  }
-  if (!Array.isArray(values) || values.some((value) => typeof value !== 'string')) {
-    throw grokFailure(
-      'GROK_PLUGIN_ACTIVATION_REGISTRY_INVALID',
-      `Grok activation registry plugins.${key} must be a string array: ${file}`,
-      { file, key },
-    );
-  }
-  return values;
-}
-
-function registeredActivationState(ctx) {
-  const file = path.join(resolveTarget(ctx), 'config.toml');
-  if (!fs.existsSync(file)) return null;
-  const text = fs.readFileSync(file, 'utf8');
-  const lines = text.split(/\r?\n/);
-  const sectionIndexes = lines
-    .map((line, index) => (/^\s*\[plugins\]\s*(?:#.*)?$/.test(line) ? index : -1))
-    .filter((index) => index >= 0);
-  if (sectionIndexes.length === 0) return null;
-  if (sectionIndexes.length !== 1) {
-    throw grokFailure(
-      'GROK_PLUGIN_ACTIVATION_REGISTRY_INVALID',
-      `Grok activation registry contains multiple [plugins] sections: ${file}`,
-      { file },
-    );
-  }
-  const start = sectionIndexes[0] + 1;
-  let end = lines.length;
-  for (let index = start; index < lines.length; index += 1) {
-    if (/^\s*\[.+\]\s*(?:#.*)?$/.test(lines[index])) {
-      end = index;
-      break;
-    }
-  }
-  const section = lines.slice(start, end).join('\n');
-  const enabled = parseActivationArray(section, 'enabled', file);
-  const disabled = parseActivationArray(section, 'disabled', file);
-  const listedEnabled = enabled?.includes(PLUGIN_NAME) === true;
-  const listedDisabled = disabled?.includes(PLUGIN_NAME) === true;
-  if (listedEnabled && listedDisabled) {
-    throw grokFailure(
-      'GROK_PLUGIN_ACTIVATION_REGISTRY_INVALID',
-      `Grok activation registry lists ${PLUGIN_NAME} as both enabled and disabled`,
-      { file },
-    );
-  }
-  if (listedEnabled) return true;
-  if (listedDisabled) return false;
-  return null;
-}
-
-function resolveNativeInstallPath(plugin) {
-  if (typeof plugin?.path !== 'string' || !plugin.path.trim()) {
-    throw grokFailure(
-      'GROK_PLUGIN_PATH_MISSING',
-      'Grok registry did not return an installed path for Ultra Builder Pro',
-    );
-  }
-  const target = path.resolve(plugin.path);
-  if (!fs.existsSync(target)) {
-    throw grokFailure('GROK_PLUGIN_PATH_MISSING', `Grok registered plugin path is missing: ${target}`);
-  }
-  const canonicalTarget = fs.realpathSync(target);
-  if (!fs.statSync(canonicalTarget).isDirectory()) {
-    throw grokFailure(
-      'GROK_PLUGIN_PATH_MISSING',
-      `Grok registered plugin path is not a directory: ${canonicalTarget}`,
-    );
-  }
-  return canonicalTarget;
-}
-
-function assertRegisteredSource(ctx, plugin, {
-  expectedPackageName,
-  expectedPackageVersion,
-  sourceRoot = resolveSourceRoot(ctx),
-} = {}) {
-  if (typeof plugin?.source !== 'string' || !plugin.source.trim()) {
-    throw grokFailure(
-      'GROK_PLUGIN_SOURCE_MISSING',
-      'Grok registry did not return the source used to install Ultra Builder Pro',
-    );
-  }
-  const expectedSource = path.resolve(sourceRoot);
-  const registeredSource = path.resolve(plugin.source);
-  if (!fs.existsSync(expectedSource) || !fs.existsSync(registeredSource)) {
-    throw grokFailure(
-      'GROK_PLUGIN_SOURCE_MISSING',
-      `Grok registered plugin source is missing: ${registeredSource}`,
-      { expected: expectedSource, actual: registeredSource },
-    );
-  }
-  const canonicalExpected = fs.realpathSync(expectedSource);
-  const canonicalSource = fs.realpathSync(registeredSource);
-  if (canonicalSource !== canonicalExpected) {
-    throw grokFailure(
-      'GROK_PLUGIN_SOURCE_MISMATCH',
-      `Grok registered ${canonicalSource}, expected managed source ${canonicalExpected}`,
-      { expected: canonicalExpected, actual: canonicalSource },
-    );
-  }
-  const report = assertManagedProvenance(canonicalSource, 'registered Grok source', {
-    expectedPackageName,
-    expectedPackageVersion,
-  });
-  return { path: canonicalSource, report };
-}
-
-function assertNativeInstallPath(ctx, plugin, {
-  expectedPackageName = null,
-  expectedPackageVersion = null,
-  sourceRoot = resolveSourceRoot(ctx),
-} = {}) {
-  const packageInfo = expectedPackageName
-    ? null
-    : provenance.packageSource(resolveRepoRoot(ctx)).packageInfo;
-  const packageName = expectedPackageName || packageInfo.name;
-  const packageVersion = expectedPackageVersion || plugin?.version;
-  if (typeof packageVersion !== 'string' || !packageVersion.trim()) {
-    throw grokFailure(
-      'GROK_PLUGIN_VERSION_MISSING',
-      'Grok registry did not return an Ultra Builder Pro package version',
-    );
-  }
-  if (plugin.version !== packageVersion) {
-    throw grokFailure(
-      'GROK_PLUGIN_VERSION_MISMATCH',
-      `Grok registered Ultra Builder Pro ${plugin.version || '<missing>'}, expected ${packageVersion}`,
-      { expected: packageVersion, actual: plugin.version || null },
-    );
-  }
-  const target = resolveNativeInstallPath(plugin);
-  if (!isManaged(target)) {
-    throw grokFailure(
-      'GROK_PLUGIN_PATH_UNSAFE',
-      `Grok registry returned an unmanaged plugin path: ${target}`,
-      { path: target },
-    );
-  }
-  assertManagedProvenance(target, 'registered Grok target', {
-    expectedPackageName: packageName,
-    expectedPackageVersion: packageVersion,
-  });
-  assertRegisteredSource(ctx, plugin, {
-    expectedPackageName: packageName,
-    expectedPackageVersion: packageVersion,
-    sourceRoot,
-  });
-  return target;
-}
-
-function assertConsumerPath(expectedTarget, reportedPath, label, ctx = {}) {
-  if (typeof reportedPath !== 'string' || !reportedPath.trim()) {
-    throw grokFailure(
-      'GROK_PLUGIN_CONSUMER_PATH_MISSING',
-      `Grok ${label} did not report the registered plugin path`,
-      { expected: expectedTarget, actual: reportedPath || null, label },
-    );
-  }
-  const absolute = path.resolve(ctx.cwd || process.cwd(), reportedPath);
-  let canonical;
-  try {
-    canonical = fs.realpathSync(absolute);
-  } catch (error) {
-    throw grokFailure(
-      'GROK_PLUGIN_PATH_SHADOWED',
-      `Grok ${label} resolved a missing path instead of the registered plugin: ${absolute}`,
-      { expected: expectedTarget, actual: absolute, label, cause_code: error.code || null },
-    );
-  }
-  if (canonical !== expectedTarget) {
-    throw grokFailure(
-      'GROK_PLUGIN_PATH_SHADOWED',
-      `Grok ${label} resolved ${canonical}, expected registered target ${expectedTarget}`,
-      { expected: expectedTarget, actual: canonical, label },
-    );
-  }
-  return canonical;
-}
-
-function nativeActivationState(ctx, target) {
-  const registeredState = registeredActivationState(ctx);
-  if (registeredState !== null) return registeredState;
-  const inspect = runGrok(ctx, ['inspect', '--json'], { json: true }).payload;
-  const matches = (Array.isArray(inspect?.plugins) ? inspect.plugins : [])
-    .filter((entry) => entry?.name === PLUGIN_NAME);
-  if (matches.length !== 1) {
-    throw grokFailure(
-      'GROK_PLUGIN_ACTIVATION_STATE_INVALID',
-      `Grok inspect returned ${matches.length} Ultra Builder Pro plugin entries`,
-      { expected: 1, actual: matches.length },
-    );
-  }
-  const plugin = matches[0];
-  assertConsumerPath(target, plugin.path, 'inspect plugin activation', ctx);
-  if (typeof plugin.enabled !== 'boolean') {
-    throw grokFailure(
-      'GROK_PLUGIN_ACTIVATION_STATE_INVALID',
-      'Grok inspect did not report a boolean Ultra Builder Pro activation state',
-      { actual: plugin.enabled ?? null },
-    );
-  }
-  return plugin.enabled;
-}
-
-function restoreNativeActivation(ctx, target, enabled) {
-  runGrok(ctx, ['plugin', enabled ? 'enable' : 'disable', PLUGIN_NAME]);
-  const restored = nativeActivationState(ctx, target);
-  if (restored !== enabled) {
-    throw grokFailure(
-      'GROK_ROLLBACK_ACTIVATION_MISMATCH',
-      `Grok restored Ultra Builder Pro with enabled=${restored}, expected enabled=${enabled}`,
-      { expected: enabled, actual: restored },
-    );
-  }
-  return restored;
-}
-
-function nativeConsumerState(ctx = {}, registered = null) {
-  const registryEntry = registered || installedPlugin(ctx);
-  const target = registryEntry ? assertNativeInstallPath(ctx, registryEntry) : null;
-  const inspect = runGrok(ctx, ['inspect', '--json'], { json: true }).payload;
-  const plugins = Array.isArray(inspect?.plugins) ? inspect.plugins : [];
-  const servers = Array.isArray(inspect?.mcpServers) ? inspect.mcpServers : [];
-  const matchingPlugins = plugins.filter((entry) => entry?.name === PLUGIN_NAME);
-  const matchingServers = servers.filter((entry) => (
-    entry?.name === MCP_SERVER_NAME
-    && entry?.source?.type === 'plugin'
-    && entry?.source?.plugin_name === PLUGIN_NAME
-  ));
-  if (target) {
-    for (const pluginEntry of matchingPlugins) {
-      assertConsumerPath(target, pluginEntry.path, 'inspect plugin', ctx);
-    }
-    for (const serverEntry of matchingServers) {
-      assertConsumerPath(target, serverEntry.source.path, 'inspect plugin MCP source', ctx);
-    }
-  }
-  const plugin = matchingPlugins[0] || null;
-  const mcp = matchingServers[0] || null;
-  const doctor = runGrok(
-    ctx,
-    ['mcp', 'doctor', MCP_SERVER_NAME, '--json'],
-    { json: true, timeout: 60_000 },
-  ).payload;
-  const doctorServers = Array.isArray(doctor?.servers) ? doctor.servers : [];
-  const doctorServer = doctorServers.find((entry) => {
-    if (entry?.name !== MCP_SERVER_NAME) return false;
-    if (typeof entry.source === 'string') return entry.source.includes(PLUGIN_NAME);
-    return entry?.source?.plugin_name === PLUGIN_NAME;
-  }) || null;
-  return {
-    inspect,
-    doctor,
-    plugin,
-    mcp,
-    doctorServer,
-    target,
-    healthy: Boolean(plugin && mcp && doctorServer?.healthy === true),
-  };
-}
-
-function buildStaging(repoRoot, staging, ctx) {
-  const copied = {
-    commands: copyCommands(repoRoot, staging),
-    skills: copySkills(repoRoot, staging),
-    agents: copyAgents(repoRoot, staging),
-    hooks: copyHooks(repoRoot, staging),
-  };
-  const runtime = buildMcpRuntime(repoRoot, staging, { runtime: 'grok' });
-  writeManifests(repoRoot, staging);
-  if (fs.existsSync(path.join(repoRoot, 'LICENSE'))) {
-    fs.copyFileSync(path.join(repoRoot, 'LICENSE'), path.join(staging, 'LICENSE'));
-  }
-  markManaged(staging, { adapter: 'grok', plugin: PLUGIN_NAME });
-  const validation = validatePlugin(staging, ctx);
-  return { copied, validation };
-}
-
-function writeProvenance(repoRoot, pluginRoot) {
-  const source = provenance.packageSource(repoRoot);
-  const file = path.join(pluginRoot, PROVENANCE_FILE);
-  const manifest = provenance.writeProvenance({
-    file,
-    adapter: 'grok',
-    ...source,
-    roots: { plugin: pluginRoot },
-    assets: provenance.assetRefsForTree('plugin', pluginRoot, {
-      exclude: ['.ubp-managed', PROVENANCE_FILE],
-    }),
+  markManaged(staging, { adapter: 'grok', plugin: PLUGIN_NAME, version: pkg.version });
+  writePluginProvenance({
+    adapter: 'grok', repoRoot, stagingRoot: staging, publishedRoot,
     contracts: {
       plugin_manifest: { root: 'plugin', path: 'plugin.json' },
-      mcp_registration: { root: 'plugin', path: '.mcp.json' },
-      mcp_launcher: { root: 'plugin', path: 'runtime/launch.cjs' },
-      native_runtime: { root: 'plugin', path: 'runtime/native-runtime.json' },
-      context_envelope_helper: { root: 'plugin', path: 'runtime/hook-context.cjs' },
       hooks_manifest: { root: 'plugin', path: 'hooks/hooks.json' },
-      hook_adapter: { root: 'plugin', path: path.join('hooks', 'adapters', 'grok.py') },
+      hook_adapter: { root: 'plugin', path: 'hooks/adapters/grok.py' },
     },
   });
-  return { file, manifest };
+  return { skills };
 }
 
-function managedCopy(source, target) {
-  ensureDir(path.dirname(target));
-  fs.cpSync(source, target, { recursive: true, force: false, errorOnExist: true });
+function shouldRunHostCli(ctx = {}) {
+  if (typeof ctx.runHostCli === 'boolean') return ctx.runHostCli;
+  return ctx.scope === 'global' && !ctx.configDir;
 }
 
-function rebaseProvenanceRoot(pluginRoot) {
-  const file = path.join(pluginRoot, PROVENANCE_FILE);
-  if (!fs.existsSync(file)) return null;
-  const manifest = JSON.parse(fs.readFileSync(file, 'utf8'));
-  if (!manifest.roots || typeof manifest.roots !== 'object') {
-    throw grokFailure(
-      'GROK_ROLLBACK_SOURCE_INVALID',
-      `rollback source has invalid provenance roots: ${file}`,
-    );
-  }
-  manifest.roots.plugin = path.resolve(pluginRoot);
-  writeAtomic(file, `${JSON.stringify(manifest, null, 2)}\n`);
-  return manifest;
-}
-
-function sourceMatchesRegistration(source, registered) {
-  try {
-    const manifest = JSON.parse(fs.readFileSync(path.join(source, 'plugin.json'), 'utf8'));
-    return (
-      manifest.name === PLUGIN_NAME
-      && (!registered.version || manifest.version === registered.version)
-    );
-  } catch {
-    return false;
-  }
-}
-
-function ensureRecoverySource(registered, sourceRoot, nativeBackup) {
-  const declaredSource = typeof registered.source === 'string'
-    ? path.resolve(registered.source)
-    : null;
-  if (
-    declaredSource
-    && fs.existsSync(declaredSource)
-    && isManaged(declaredSource)
-    && sourceMatchesRegistration(declaredSource, registered)
-  ) {
-    return declaredSource;
-  }
-  if (
-    fs.existsSync(sourceRoot)
-    && isManaged(sourceRoot)
-    && sourceMatchesRegistration(sourceRoot, registered)
-  ) {
-    return sourceRoot;
-  }
-  if (fs.existsSync(sourceRoot)) {
-    throw grokFailure(
-      'GROK_ROLLBACK_SOURCE_CONFLICT',
-      `cannot reconstruct the prior Grok source over existing bytes: ${sourceRoot}`,
-    );
-  }
-  if (!nativeBackup || !fs.existsSync(nativeBackup)) {
-    throw grokFailure(
-      'GROK_ROLLBACK_SOURCE_MISSING',
-      'the previous Grok plugin source is unavailable and cannot be reconstructed safely',
-    );
-  }
-  managedCopy(nativeBackup, sourceRoot);
-  rebaseProvenanceRoot(sourceRoot);
-  return sourceRoot;
-}
-
-function nativeUninstall(ctx, { allowMissing = false } = {}) {
-  const entry = installedPlugin(ctx);
-  if (!entry) {
-    if (allowMissing) return null;
-    throw grokFailure('GROK_PLUGIN_NOT_REGISTERED', 'Ultra Builder Pro is not registered by Grok');
-  }
-  runGrok(ctx, ['plugin', 'uninstall', PLUGIN_NAME, '--confirm', '--keep-data']);
-  return entry;
-}
-
-function restoreNativeRegistration(ctx, source, {
-  verifyConsumer = true,
-  enabled = true,
-} = {}) {
-  if (!source || !fs.existsSync(source)) {
-    throw grokFailure(
-      'GROK_ROLLBACK_SOURCE_MISSING',
-      `cannot restore Grok registration from missing source: ${source || '<none>'}`,
-    );
-  }
-  const current = installedPlugin(ctx);
-  if (current) nativeUninstall(ctx, { allowMissing: true });
-  runGrok(ctx, ['plugin', 'install', source, '--trust']);
-  const registered = installedPlugin(ctx);
-  if (!registered) {
-    throw grokFailure(
-      'GROK_ROLLBACK_NOT_REGISTERED',
-      'Grok did not register the restored Ultra Builder Pro source',
-    );
-  }
-  const finalized = finalizeNativeRegistration(
-    ctx,
-    resolveRepoRoot(ctx),
-    source,
-    registered,
-    { expectedPackageVersion: registered.version },
-  );
-  const target = finalized.target;
-  if (
-    typeof registered.source === 'string'
-    && path.resolve(registered.source) !== path.resolve(source)
-  ) {
-    throw grokFailure(
-      'GROK_ROLLBACK_SOURCE_MISMATCH',
-      `Grok restored Ultra from ${registered.source}, expected ${source}`,
-    );
-  }
-  runGrok(ctx, ['plugin', 'details', PLUGIN_NAME]);
-  restoreNativeActivation(ctx, target, enabled);
-  let consumer = null;
-  if (verifyConsumer) {
-    consumer = nativeConsumerState(ctx, registered);
-    if (!consumer.healthy) {
-      throw grokFailure(
-        'GROK_ROLLBACK_NOT_ACTIVE',
-        'restored Grok plugin did not pass native inspect and MCP Doctor',
-      );
-    }
-  }
-  return { registered, target, consumer };
-}
-
-function combinedRollbackFailure(originalError, rollbackError, recovery = {}) {
-  const error = grokFailure(
-    'GROK_INSTALL_ROLLBACK_FAILED',
-    [
-      `Grok install failed: ${originalError.message}`,
-      `rollback failed: ${rollbackError.message}`,
-    ].join('; '),
-    {
-      original_code: originalError.code || null,
-      rollback_code: rollbackError.code || null,
-      ...recovery,
-    },
-  );
-  error.cause = originalError;
-  error.original_error = originalError.message;
-  error.rollback_error = rollbackError.message;
-  return error;
-}
-
-function combinedUninstallRollbackFailure(originalError, rollbackError, recovery = {}) {
-  const error = grokFailure(
-    'GROK_UNINSTALL_ROLLBACK_FAILED',
-    [
-      `Grok uninstall failed: ${originalError.message}`,
-      `rollback failed: ${rollbackError.message}`,
-    ].join('; '),
-    {
-      original_code: originalError.code || null,
-      rollback_code: rollbackError.code || null,
-      ...recovery,
-    },
-  );
-  error.cause = originalError;
-  error.original_error = originalError.message;
-  error.rollback_error = rollbackError.message;
-  return error;
-}
-
-function assertOwnedForUninstall(target, label) {
-  if (!fs.existsSync(target)) return;
-  if (!isManaged(target)) {
-    throw grokFailure(
-      'GROK_UNINSTALL_OWNERSHIP_CONFLICT',
-      `refusing to uninstall because ${label} is not owned by Ultra: ${target}`,
-      { label, path: target },
-    );
-  }
-}
-
-function assertManagedProvenance(target, label, {
-  expectedPackageName,
-  expectedPackageVersion = null,
-  allowMarkerOnly = false,
-} = {}) {
-  if (!fs.existsSync(target)) return null;
-  const stat = fs.lstatSync(target);
-  if (!stat.isDirectory()) {
-    throw grokFailure(
-      'GROK_MANAGED_ROOT_INVALID',
-      `${label} is not a managed directory: ${target}`,
-      { label, path: target },
-    );
-  }
-  if (!isManaged(target)) {
-    throw grokFailure(
-      'GROK_MANAGED_ROOT_UNOWNED',
-      `${label} is not owned by Ultra: ${target}`,
-      { label, path: target },
-    );
-  }
-  const file = path.join(target, PROVENANCE_FILE);
-  if (allowMarkerOnly && !fs.existsSync(file)) {
-    return { status: 'legacy', path: target };
-  }
-  const report = provenance.inspectProvenance({
-    file,
-    expectedAdapter: 'grok',
-    expectedPackageVersion,
+function runGrok(ctx, args) {
+  const result = spawnSync(ctx.grokBin || 'grok', args, {
+    encoding: 'utf8', timeout: ctx.hostCliTimeoutMs || 30000,
+    env: { ...process.env, GROK_HOME: resolveTarget(ctx) },
   });
-  if (report.status !== 'healthy' || report.package?.name !== expectedPackageName) {
-    throw grokFailure(
-      'GROK_MANAGED_ROOT_PROVENANCE_INVALID',
-      `${label} failed Ultra provenance verification: ${target}`,
-      { label, path: target, issues: report.issues },
-    );
-  }
-  const manifest = JSON.parse(fs.readFileSync(file, 'utf8'));
-  const declaredRoot = path.resolve(manifest.roots?.plugin || '');
-  const canonicalDeclaredRoot = fs.existsSync(declaredRoot)
-    ? fs.realpathSync(declaredRoot)
-    : declaredRoot;
-  const canonicalTarget = fs.realpathSync(target);
-  if (canonicalDeclaredRoot !== canonicalTarget) {
-    throw grokFailure(
-      'GROK_MANAGED_ROOT_PROVENANCE_INVALID',
-      `${label} provenance is bound to a different root: ${target}`,
-      {
-        label,
-        path: target,
-        declared_root: manifest.roots?.plugin || null,
-      },
-    );
-  }
-  return report;
-}
-
-function finalizeNativeRegistration(ctx, repoRoot, sourceRoot, registered, {
-  expectedPackageVersion = null,
-} = {}) {
-  const packageInfo = provenance.packageSource(repoRoot).packageInfo;
-  const packageVersion = expectedPackageVersion || packageInfo.version;
-  if (registered.version !== packageVersion) {
-    throw grokFailure(
-      'GROK_PLUGIN_VERSION_MISMATCH',
-      `Grok installed Ultra Builder Pro ${registered.version || '<missing>'}, expected ${packageVersion}`,
-      { expected: packageVersion, actual: registered.version || null },
-    );
-  }
-  const target = resolveNativeInstallPath(registered);
-  if (!isManaged(target)) {
-    throw grokFailure(
-      'GROK_PLUGIN_PATH_UNSAFE',
-      `Grok registry returned an unmanaged plugin path: ${target}`,
-      { path: target },
-    );
-  }
-  const source = assertRegisteredSource(ctx, registered, {
-    expectedPackageName: packageInfo.name,
-    expectedPackageVersion: packageVersion,
-    sourceRoot,
-  });
-  const file = path.join(target, PROVENANCE_FILE);
-  let copiedManifest;
-  try {
-    copiedManifest = JSON.parse(fs.readFileSync(file, 'utf8'));
-  } catch (error) {
-    throw grokFailure(
-      'GROK_PLUGIN_TARGET_PROVENANCE_INVALID',
-      `Grok installed target has invalid copied provenance: ${target}`,
-      { path: target, cause_code: error.code || null },
-    );
-  }
-  const declaredRoot = path.resolve(copiedManifest.roots?.plugin || '');
-  const canonicalDeclaredRoot = fs.existsSync(declaredRoot)
-    ? fs.realpathSync(declaredRoot)
-    : declaredRoot;
-  if (
-    canonicalDeclaredRoot !== source.path
-    && canonicalDeclaredRoot !== target
-  ) {
-    throw grokFailure(
-      'GROK_PLUGIN_TARGET_PROVENANCE_INVALID',
-      `Grok installed target provenance is not derived from its registered source: ${target}`,
-      { path: target, declared_root: copiedManifest.roots?.plugin || null },
-    );
-  }
-  if (
-    typeof copiedManifest.content?.digest !== 'string'
-    || copiedManifest.content.digest !== source.report.content_digest
-  ) {
-    throw grokFailure(
-      'GROK_PLUGIN_TARGET_PROVENANCE_INVALID',
-      `Grok installed target does not match its registered source provenance: ${target}`,
-      {
-        path: target,
-        expected_digest: source.report.content_digest,
-        actual_digest: copiedManifest.content?.digest || null,
-      },
-    );
-  }
-  const manifest = rebaseProvenanceRoot(target);
-  const targetReport = assertManagedProvenance(target, 'registered Grok target', {
-    expectedPackageName: packageInfo.name,
-    expectedPackageVersion: packageVersion,
-  });
-  if (targetReport.content_digest !== source.report.content_digest) {
-    throw grokFailure(
-      'GROK_PLUGIN_TARGET_PROVENANCE_INVALID',
-      `Grok installed target assets differ from its registered source: ${target}`,
-      {
-        path: target,
-        expected_digest: source.report.content_digest,
-        actual_digest: targetReport.content_digest,
-      },
-    );
-  }
-  assertNativeInstallPath(ctx, registered, {
-    expectedPackageName: packageInfo.name,
-    expectedPackageVersion: packageVersion,
-    sourceRoot,
-  });
-  return { target, provenance: { file, manifest } };
+  if (result.error) throw result.error;
+  if (result.status !== 0) throw new Error((result.stderr || result.stdout || '').trim() || `grok ${args.join(' ')} failed`);
+  return result.stdout;
 }
 
-function installPreflight(ctx, repoRoot, sourceRoot, legacyRoot) {
-  try {
-    const packageInfo = provenance.packageSource(repoRoot).packageInfo;
-    const registered = installedPlugin(ctx);
-    let installedRoot = null;
-    if (registered) {
-      installedRoot = assertNativeInstallPath(ctx, registered, {
-        expectedPackageName: packageInfo.name,
-        expectedPackageVersion: registered.version,
-        sourceRoot,
-      });
-      const consumer = nativeConsumerState(ctx, registered);
-      if (!consumer.healthy) {
-        throw grokFailure(
-          'GROK_PLUGIN_MCP_INACTIVE',
-          'existing Grok registration did not pass native inspect and MCP Doctor',
-        );
-      }
-    } else {
-      assertManagedProvenance(sourceRoot, 'current Grok source', {
-        expectedPackageName: packageInfo.name,
-        expectedPackageVersion: null,
-      });
-    }
-    assertManagedProvenance(legacyRoot, 'legacy Grok plugin', {
-      expectedPackageName: packageInfo.name,
-      allowMarkerOnly: true,
-    });
-    return { registered, installedRoot };
-  } catch (error) {
-    const failure = grokFailure(
-      'GROK_INSTALL_PREFLIGHT_FAILED',
-      `Grok install preflight failed: ${error.message}`,
-      { cause_code: error.code || null, ...(error.details || {}) },
-    );
-    failure.cause = error;
-    throw failure;
-  }
+function installedPlugin(ctx) {
+  const value = JSON.parse(runGrok(ctx, ['plugin', 'list', '--json']));
+  if (!Array.isArray(value)) throw new Error('grok plugin list --json must return an array');
+  return value.find((entry) => entry?.name === PLUGIN_NAME) || null;
 }
 
 function install(ctx = {}) {
+  assertPluginScope(ctx);
   const sourceRoot = resolveSourceRoot(ctx);
-  const legacyRoot = resolvePluginRoot(ctx);
+  const configRoot = resolveTarget(ctx);
   const repoRoot = resolveRepoRoot(ctx);
-  const capability = probeNativeCapabilities(ctx);
-  if (capability.status !== 'pass') {
-    throw grokFailure(
-      'GROK_CLI_UNAVAILABLE',
-      'Grok CLI is required for formal plugin installation; no files were changed',
-    );
-  }
-  const preflight = installPreflight(ctx, repoRoot, sourceRoot, legacyRoot);
-  const sourceParent = path.dirname(sourceRoot);
-  ensureDir(sourceParent);
-  const staging = fs.mkdtempSync(path.join(sourceParent, `${PLUGIN_NAME}-staging-`));
-  const sourceBackup = `${staging}-source-previous`;
-  const backupRoot = resolveBackupRoot(ctx);
-  const transactionId = crypto.randomUUID();
-  const legacyBackup = path.join(backupRoot, `legacy-plugin-${transactionId}`);
-  const nativeBackup = path.join(backupRoot, `native-plugin-${transactionId}`);
-  let sourceMoved = false;
-  let sourcePublished = false;
-  let legacyMoved = false;
-  let nativeSnapshot = false;
-  let registryMutationStarted = false;
-  const originalNative = preflight.registered;
-  let built;
-
+  const cleanupAbsent = managedMetadata(sourceRoot)?.cleanup_absent
+    || captureAbsent(configRoot, ['.', '.ubp', path.join('.ubp', 'plugin-sources'), 'plugins']);
+  ensureDir(path.dirname(sourceRoot));
+  const staging = fs.mkdtempSync(path.join(path.dirname(sourceRoot), `.${PLUGIN_NAME}-staging-`));
+  const recovery = fs.existsSync(sourceRoot)
+    ? fs.mkdtempSync(path.join(path.dirname(sourceRoot), `.${PLUGIN_NAME}-recovery-`))
+    : null;
+  if (recovery) fs.cpSync(sourceRoot, recovery, { recursive: true });
+  let previousRegistration = null;
   try {
-    built = buildStaging(repoRoot, staging, ctx);
-    if (fs.existsSync(sourceRoot)) {
-      if (!isManaged(sourceRoot)) {
-        throw grokFailure(
-          'GROK_SOURCE_UNMANAGED',
-          `refusing to replace unmanaged Grok plugin source: ${sourceRoot}`,
-        );
-      }
-      fs.renameSync(sourceRoot, sourceBackup);
-      sourceMoved = true;
-    }
-    fs.renameSync(staging, sourceRoot);
-    sourcePublished = true;
-    writeProvenance(repoRoot, sourceRoot);
-
-    if (originalNative) {
-      const installedRoot = preflight.installedRoot;
-      if (!isManaged(installedRoot)) {
-        throw grokFailure(
-          'GROK_PLUGIN_OWNERSHIP_CONFLICT',
-          `refusing to replace an installed Grok plugin not owned by Ultra: ${installedRoot}`,
-        );
-      }
-      ensureDir(backupRoot);
-      managedCopy(installedRoot, nativeBackup);
-      nativeSnapshot = true;
-    }
-
-    if (fs.existsSync(legacyRoot)) {
-      if (!isManaged(legacyRoot)) {
-        throw grokFailure(
-          'GROK_LEGACY_PLUGIN_UNMANAGED',
-          `refusing to migrate unmanaged Grok plugin: ${legacyRoot}`,
-        );
-      }
-      ensureDir(backupRoot);
-      fs.renameSync(legacyRoot, legacyBackup);
-      legacyMoved = true;
-    }
-
-    if (originalNative) {
-      registryMutationStarted = true;
-      nativeUninstall(ctx);
-    }
-    registryMutationStarted = true;
-    runGrok(ctx, ['plugin', 'install', sourceRoot, '--trust']);
-    runGrok(ctx, ['plugin', 'enable', PLUGIN_NAME]);
-    const registered = installedPlugin(ctx);
-    if (!registered) {
-      throw grokFailure(
-        'GROK_PLUGIN_NOT_REGISTERED',
-        'Grok accepted the plugin install command but did not register Ultra Builder Pro',
-      );
-    }
-    const finalized = finalizeNativeRegistration(ctx, repoRoot, sourceRoot, registered);
-    const target = finalized.target;
-    const provenanceReport = finalized.provenance;
-    const consumer = nativeConsumerState(ctx, registered);
-    if (!consumer.healthy) {
-      throw grokFailure(
-        'GROK_PLUGIN_NOT_ACTIVE',
-        'Grok registered Ultra Builder Pro but did not activate its plugin MCP consumer',
-      );
-    }
-
-    if (sourceMoved && fs.existsSync(sourceBackup)) removeTree(sourceBackup);
-    if (nativeSnapshot && fs.existsSync(nativeBackup)) removeTree(nativeBackup);
+    const copied = buildStaging(repoRoot, staging, sourceRoot);
+    markManaged(staging, { cleanup_absent: cleanupAbsent });
+    publishManagedTrees([{ source: staging, target: sourceRoot, label: 'Grok plugin source' }]);
+    if (shouldRunHostCli(ctx)) {
+      runGrok(ctx, ['plugin', 'validate', sourceRoot]);
+      previousRegistration = installedPlugin(ctx);
+      if (previousRegistration) runGrok(ctx, ['plugin', 'uninstall', PLUGIN_NAME, '--confirm', '--keep-data']);
+      runGrok(ctx, ['plugin', 'install', sourceRoot, '--trust']);
+      runGrok(ctx, ['plugin', 'enable', PLUGIN_NAME]);
+      runGrok(ctx, ['plugin', 'details', PLUGIN_NAME]);
+    }
+    if (recovery) removeTree(recovery);
     return {
-      target,
-      source: sourceRoot,
-      ...built,
-      provenance: provenanceReport,
-      native_registry: {
-        status: 'pass',
-        repo_key: registered.repo_key || null,
-        path: target,
-      },
-      native_consumer: {
-        status: 'pass',
-        mcp: MCP_SERVER_NAME,
-        healthy: true,
-      },
-      migration: legacyMoved ? {
-        legacy_backup: legacyBackup,
-        legacy_source_removed: true,
-      } : null,
-      trusted: true,
-      reload_required: true,
+      target: sourceRoot,
+      pluginRoot: sourceRoot,
+      skillRoot: path.join(sourceRoot, 'skills'),
+      hookRoot: path.join(sourceRoot, 'hooks'),
+      copied,
     };
   } catch (error) {
-    let rollbackError = null;
-    let recoverySource = null;
+    const rollback = [];
     try {
-      if (registryMutationStarted) nativeUninstall(ctx, { allowMissing: true });
-      if (sourcePublished && fs.existsSync(sourceRoot)) removeTree(sourceRoot);
-      else if (fs.existsSync(staging)) removeTree(staging);
-      if (sourceMoved && fs.existsSync(sourceBackup)) fs.renameSync(sourceBackup, sourceRoot);
-      if (legacyMoved && fs.existsSync(legacyBackup)) {
-        ensureDir(path.dirname(legacyRoot));
-        fs.renameSync(legacyBackup, legacyRoot);
-      }
-      if (originalNative && registryMutationStarted) {
-        recoverySource = ensureRecoverySource(originalNative, sourceRoot, nativeBackup);
-        restoreNativeRegistration(ctx, recoverySource);
+      if (fs.existsSync(sourceRoot)) removeTree(sourceRoot);
+      if (recovery) fs.renameSync(recovery, sourceRoot);
+      if (previousRegistration && shouldRunHostCli(ctx)) {
+        try { runGrok(ctx, ['plugin', 'uninstall', PLUGIN_NAME, '--confirm', '--keep-data']); } catch {}
+        runGrok(ctx, ['plugin', 'install', sourceRoot, '--trust']);
+        if (previousRegistration.enabled !== false) runGrok(ctx, ['plugin', 'enable', PLUGIN_NAME]);
       }
-      if (nativeSnapshot && fs.existsSync(nativeBackup)) removeTree(nativeBackup);
-    } catch (caughtRollbackError) {
-      rollbackError = caughtRollbackError;
-    }
-    if (rollbackError) {
-      throw combinedRollbackFailure(error, rollbackError, {
-        recovery_source: recoverySource,
-        native_backup: nativeSnapshot && fs.existsSync(nativeBackup) ? nativeBackup : null,
-      });
+    } catch (rollbackError) {
+      rollback.push(rollbackError);
     }
+    if (fs.existsSync(staging)) removeTree(staging);
+    pruneCreatedEmpty(configRoot, cleanupAbsent);
+    if (rollback.length) throw new AggregateError([error, ...rollback], 'Grok install and rollback failed');
     throw error;
   }
 }
 
 function doctor(ctx = {}) {
-  const source = provenance.packageSource(resolveRepoRoot(ctx));
-  const capability = probeNativeCapabilities(ctx);
-  if (capability.status === 'unavailable') {
-    const sourceRoot = resolveSourceRoot(ctx);
-    const report = provenance.inspectProvenance({
-      file: path.join(sourceRoot, PROVENANCE_FILE),
-      expectedAdapter: 'grok',
-      expectedPackageVersion: source.packageInfo.version,
-    });
-    report.checks.native_registry = { status: 'unavailable' };
-    report.checks.native_consumer = { status: 'unavailable' };
-    report.issues.push({
-      code: 'GROK_CLI_UNAVAILABLE',
-      message: 'Grok CLI is unavailable, so native registry and MCP activation were not verified',
-    });
-    report.status = 'degraded';
-    return applyNativeDoctor(report, path.join(sourceRoot, 'runtime'));
-  }
-
-  let registered;
-  try {
-    registered = installedPlugin(ctx);
-  } catch (error) {
-    return {
-      adapter: 'grok',
-      status: 'degraded',
-      manifest_path: null,
-      checks: { native_registry: { status: 'fail' } },
-      issues: [{ code: error.code || 'GROK_PLUGIN_LIST_FAILED', message: error.message }],
-    };
-  }
-  if (!registered) {
-    const legacyRoot = resolvePluginRoot(ctx);
-    return {
-      adapter: 'grok',
-      status: 'degraded',
-      manifest_path: fs.existsSync(path.join(legacyRoot, PROVENANCE_FILE))
-        ? path.join(legacyRoot, PROVENANCE_FILE)
-        : null,
-      checks: {
-        native_registry: { status: 'fail' },
-        raw_plugin: {
-          status: fs.existsSync(legacyRoot) ? 'found' : 'missing',
-          path: legacyRoot,
-        },
-      },
-      issues: [{
-        code: 'GROK_PLUGIN_NOT_REGISTERED',
-        message: fs.existsSync(legacyRoot)
-          ? 'a raw Grok plugin exists, but the native Grok plugin registry does not contain it'
-          : 'Ultra Builder Pro is not registered in the native Grok plugin registry',
-      }],
-    };
-  }
-
-  let target;
-  try {
-    target = assertNativeInstallPath(ctx, registered, {
-      expectedPackageName: source.packageInfo.name,
-      expectedPackageVersion: source.packageInfo.version,
-      sourceRoot: resolveSourceRoot(ctx),
-    });
-  } catch (error) {
-    return {
-      adapter: 'grok',
-      status: 'degraded',
-      manifest_path: null,
-      checks: {
-        native_registry: {
-          status: 'fail',
-          repo_key: registered.repo_key || null,
-          path: registered.path,
-        },
-        native_consumer: { status: 'unknown' },
-      },
-      issues: [{
-        code: error.code || 'GROK_PLUGIN_PATH_INVALID',
-        message: error.message,
-        ...(error.details || {}),
-      }],
-    };
-  }
-  const report = provenance.inspectProvenance({
-    file: path.join(target, PROVENANCE_FILE),
-    expectedAdapter: 'grok',
-    expectedPackageVersion: source.packageInfo.version,
+  assertPluginScope(ctx);
+  const sourceRoot = resolveSourceRoot(ctx);
+  const report = inspectPlugin({
+    adapter: 'grok', repoRoot: resolveRepoRoot(ctx), pluginRoot: sourceRoot,
+    skillRoot: path.join(sourceRoot, 'skills'), hookRoot: path.join(sourceRoot, 'hooks'),
+    manifestFile: path.join(sourceRoot, 'plugin.json'),
   });
-  report.checks.native_registry = {
-    status: 'pass',
-    repo_key: registered.repo_key || null,
-    path: target,
-  };
-  try {
-    const details = runGrok(ctx, ['plugin', 'details', PLUGIN_NAME]);
-    report.checks.plugin_details = {
-      status: 'pass',
-      output: details.stdout.trim(),
-    };
-  } catch (error) {
-    report.checks.plugin_details = { status: 'fail' };
-    report.issues.push({
-      code: 'GROK_PLUGIN_DETAILS_FAILED',
-      message: error.message,
-    });
-  }
-  try {
-    const consumer = nativeConsumerState(ctx, registered);
-    report.checks.native_consumer = {
-      status: consumer.healthy ? 'pass' : 'fail',
-      plugin_discovered: Boolean(consumer.plugin),
-      plugin_mcp_active: Boolean(consumer.mcp),
-      mcp_healthy: consumer.doctorServer?.healthy === true,
-    };
-    if (!consumer.healthy) {
-      report.issues.push({
-        code: 'GROK_PLUGIN_MCP_INACTIVE',
-        message: 'Grok native inspection or MCP Doctor did not confirm the plugin MCP consumer',
-      });
-    }
-  } catch (error) {
-    report.checks.native_consumer = { status: 'fail' };
-    report.issues.push({
-      code: error.code || 'GROK_PLUGIN_MCP_CHECK_FAILED',
-      message: error.message,
-    });
-  }
-  try {
-    report.checks.plugin_validation = validatePlugin(target, ctx);
-  } catch (error) {
-    report.checks.plugin_validation = { status: 'fail' };
-    report.issues.push({ code: 'PLUGIN_MANIFEST_INVALID', message: error.message });
-  }
-  return applyNativeDoctor(report, path.join(target, 'runtime'));
+  if (shouldRunHostCli(ctx)) {
+    let discovered = false;
+    try {
+      const plugin = installedPlugin(ctx);
+      discovered = !!plugin && plugin.enabled !== false;
+      if (discovered) runGrok(ctx, ['plugin', 'details', PLUGIN_NAME]);
+    } catch {}
+    report.checks.native_registry = { status: discovered ? 'pass' : 'fail' };
+    if (!discovered) report.issues.push({ code: 'GROK_PLUGIN_NOT_REGISTERED' });
+  }
+  report.status = report.issues.length === 0 ? 'healthy' : 'degraded';
+  return report;
 }
 
 function uninstall(ctx = {}) {
+  assertPluginScope(ctx);
   const sourceRoot = resolveSourceRoot(ctx);
-  const legacyRoot = resolvePluginRoot(ctx);
-  const capability = probeNativeCapabilities(ctx);
-  if (capability.status !== 'pass') {
-    throw grokFailure(
-      'GROK_CLI_UNAVAILABLE',
-      'Grok CLI is required for formal plugin uninstall; no files were changed',
-    );
-  }
-  const report = {
-    target: null,
-    source: sourceRoot,
-    removed: {},
-    native_registry: { status: capability.status },
+  const configRoot = resolveTarget(ctx);
+  const cleanupAbsent = managedMetadata(sourceRoot)?.cleanup_absent || [];
+  if (shouldRunHostCli(ctx)) {
+    const plugin = installedPlugin(ctx);
+    if (plugin) runGrok(ctx, ['plugin', 'uninstall', PLUGIN_NAME, '--confirm', '--keep-data']);
+  }
+  const legacy = resolvePluginRoot(ctx);
+  const removedLegacy = fs.existsSync(legacy) && isManaged(legacy)
+    ? removeManaged(legacy, 'legacy Grok plugin')
+    : false;
+  const removedSource = removeManaged(sourceRoot, 'Grok plugin source');
+  const cleaned = pruneCreatedEmpty(configRoot, cleanupAbsent);
+  return {
+    target: sourceRoot,
+    pluginRoot: sourceRoot,
+    removed: {
+      source: removedSource,
+      legacy: removedLegacy,
+    },
+    cleaned,
   };
-  const registered = installedPlugin(ctx);
-  let installedRoot = null;
-  let registeredEnabled = null;
-  if (registered) {
-    installedRoot = resolveNativeInstallPath(registered);
-    report.target = installedRoot;
-  }
-  const declaredSource = registered && typeof registered.source === 'string'
-    ? path.resolve(registered.source)
-    : null;
-  const ownershipTargets = [
-    [installedRoot, 'managed target'],
-    [sourceRoot, 'persistent source'],
-    [legacyRoot, 'legacy raw plugin'],
-    [
-      declaredSource
-        && declaredSource !== path.resolve(sourceRoot)
-        && declaredSource !== installedRoot
-        ? declaredSource
-        : null,
-      'registered source',
-    ],
-  ];
-  for (const [target, label] of ownershipTargets) {
-    if (target) assertOwnedForUninstall(target, label);
-  }
-  if (registered) {
-    installedRoot = assertNativeInstallPath(ctx, registered);
-    runGrok(ctx, ['plugin', 'details', PLUGIN_NAME]);
-    registeredEnabled = nativeActivationState(ctx, installedRoot);
-  }
-
-  const transactionId = crypto.randomUUID();
-  const sourceBackup = path.join(
-    path.dirname(sourceRoot),
-    `.${path.basename(sourceRoot)}-uninstall-${transactionId}`,
-  );
-  const legacyBackup = path.join(
-    path.dirname(legacyRoot),
-    `.${path.basename(legacyRoot)}-uninstall-${transactionId}`,
-  );
-  const backupRoot = resolveBackupRoot(ctx);
-  const nativeBackup = path.join(
-    backupRoot,
-    `uninstall-native-${transactionId}`,
-  );
-  let sourceStaged = false;
-  let legacyStaged = false;
-  let nativeSnapshot = false;
-  let registryMutationStarted = false;
-  try {
-    if (fs.existsSync(sourceRoot)) {
-      fs.renameSync(sourceRoot, sourceBackup);
-      sourceStaged = true;
-    }
-    if (fs.existsSync(legacyRoot)) {
-      fs.renameSync(legacyRoot, legacyBackup);
-      legacyStaged = true;
-    }
-    if (registered) {
-      ensureDir(backupRoot);
-      managedCopy(installedRoot, nativeBackup);
-      nativeSnapshot = true;
-      registryMutationStarted = true;
-      nativeUninstall(ctx);
-      report.removed.native_plugin = true;
-    }
-    const remaining = installedPlugin(ctx);
-    if (remaining) {
-      throw grokFailure(
-        'GROK_UNINSTALL_NOT_REMOVED',
-        'Grok reported uninstall success but the native registry still contains Ultra Builder Pro',
-      );
-    }
-    if (sourceStaged) report.removed.source = true;
-    if (legacyStaged) report.removed.legacy_plugin = true;
-    if (sourceStaged && fs.existsSync(sourceBackup)) removeTree(sourceBackup);
-    if (legacyStaged && fs.existsSync(legacyBackup)) removeTree(legacyBackup);
-    if (nativeSnapshot && fs.existsSync(nativeBackup)) removeTree(nativeBackup);
-    return report;
-  } catch (error) {
-    let rollbackError = null;
-    let recoverySource = null;
-    try {
-      if (sourceStaged && fs.existsSync(sourceBackup)) {
-        if (fs.existsSync(sourceRoot)) {
-          throw grokFailure(
-            'GROK_UNINSTALL_ROLLBACK_SOURCE_CONFLICT',
-            `cannot restore Grok source over existing bytes: ${sourceRoot}`,
-          );
-        }
-        fs.renameSync(sourceBackup, sourceRoot);
-      }
-      if (legacyStaged && fs.existsSync(legacyBackup)) {
-        if (fs.existsSync(legacyRoot)) {
-          throw grokFailure(
-            'GROK_UNINSTALL_ROLLBACK_LEGACY_CONFLICT',
-            `cannot restore legacy Grok plugin over existing bytes: ${legacyRoot}`,
-          );
-        }
-        fs.renameSync(legacyBackup, legacyRoot);
-      }
-      if (registered && registryMutationStarted) {
-        const current = installedPlugin(ctx);
-        if (current) {
-          const currentTarget = assertNativeInstallPath(ctx, current);
-          const originalSource = typeof registered.source === 'string'
-            ? path.resolve(registered.source)
-            : null;
-          const currentSource = typeof current.source === 'string'
-            ? path.resolve(current.source)
-            : null;
-          if (currentTarget !== installedRoot || currentSource !== originalSource) {
-            throw grokFailure(
-              'GROK_UNINSTALL_ROLLBACK_REGISTRY_MISMATCH',
-              'remaining Grok registration does not match the pre-uninstall registry entry',
-              {
-                expected_path: installedRoot,
-                actual_path: currentTarget,
-                expected_source: originalSource,
-                actual_source: currentSource,
-              },
-            );
-          }
-          runGrok(ctx, ['plugin', 'details', PLUGIN_NAME]);
-          restoreNativeActivation(ctx, currentTarget, registeredEnabled);
-        } else {
-          recoverySource = ensureRecoverySource(registered, sourceRoot, nativeBackup);
-          restoreNativeRegistration(ctx, recoverySource, {
-            verifyConsumer: false,
-            enabled: registeredEnabled,
-          });
-        }
-      }
-      if (nativeSnapshot && fs.existsSync(nativeBackup)) removeTree(nativeBackup);
-    } catch (caughtRollbackError) {
-      rollbackError = caughtRollbackError;
-    }
-    if (rollbackError) {
-      throw combinedUninstallRollbackFailure(error, rollbackError, {
-        recovery_source: recoverySource,
-        native_backup: nativeSnapshot && fs.existsSync(nativeBackup) ? nativeBackup : null,
-        source_backup: fs.existsSync(sourceBackup) ? sourceBackup : null,
-        legacy_backup: fs.existsSync(legacyBackup) ? legacyBackup : null,
-      });
-    }
-    throw error;
-  }
 }
 
 module.exports = {
   name: 'grok',
   PLUGIN_NAME,
-  MCP_SERVER_NAME,
   buildHooksManifest,
   resolveTarget,
   resolvePluginRoot,
   resolveSourceRoot,
-  resolveGrokBinary,
-  probeNativeCapabilities,
   install,
   doctor,
   uninstall,