tzero-mcp 10.7.0 → 10.7.1

package/src/tzero_fixer/polyglot_doctor.py

@@ -0,0 +1,372 @@
+# -*- coding: utf-8 -*-
+"""T-Zero Polyglot Ecosystem Doctor: Node, Rust, Go, Docker, & CI Workflows.
+
+Performs forensic diagnostics across polyglot project architectures:
+- Node.js / TypeScript: package.json validation, tsconfig.json integrity, lockfile conflicts, node_modules bloat.
+- Rust / Cargo: Cargo.toml linting, target/ directory bloat, missing edition flags, cargo lock sync.
+- Go Toolchain: go.mod & go.sum validation, GOPATH resolution, dangling vendor folders.
+- Docker & Containers: Dockerfile linting (unpinned base images, root user execution, dangling cache).
+- GitHub Actions CI/CD: .github/workflows YAML syntax, unpinned actions SHA, hardcoded secret leaks in workflows.
+
+Author: Toprak Ahmet Aydogmus (Siber Akademi)
+Version: 10.4.0
+"""
+
+import json
+import os
+import re
+import time
+from pathlib import Path
+from typing import Any, Dict, List, Optional, Set, Tuple
+
+from .models import (
+    DiagnosticCategory,
+    DiagnosticIssue,
+    HealAction,
+    SeverityLevel,
+)
+
+
+class PolyglotDoctor:
+    """Specialized doctor for polyglot language toolchains and container configurations."""
+
+    IGNORED_DIRS = {
+        ".git", ".svn", ".hg", "__pycache__", ".pytest_cache", ".mypy_cache",
+        "node_modules", ".venv", "venv", "env", "build", "dist", ".idea", ".vscode"
+    }
+
+    # -------------------------------------------------------------------------
+    # 1. NODE.JS & TYPESCRIPT DOCTOR
+    # -------------------------------------------------------------------------
+    @classmethod
+    def check_nodejs_project(cls, workspace_dir: str = ".") -> List[DiagnosticIssue]:
+        """Inspect package.json, package-lock.json, and tsconfig.json for common defects."""
+        issues: List[DiagnosticIssue] = []
+        root = Path(workspace_dir).resolve()
+        pkg_json = root / "package.json"
+
+        if not pkg_json.is_file():
+            return issues
+
+        try:
+            with open(pkg_json, "r", encoding="utf-8") as f:
+                data = json.load(f)
+        except json.JSONDecodeError as jde:
+            issues.append(DiagnosticIssue(
+                category=DiagnosticCategory.POLYGLOT.value,
+                severity=SeverityLevel.CRITICAL.value,
+                file_path=str(pkg_json),
+                line=jde.lineno,
+                column=jde.colno,
+                error_code="TZ-NODE-INVALID-PACKAGE-JSON",
+                message=f"package.json is corrupted or not valid JSON: {jde.msg}",
+                suggested_fix="Fix JSON syntax error in package.json",
+                auto_fixable=False
+            ))
+            return issues
+
+        # Check required fields
+        if not data.get("name"):
+            issues.append(DiagnosticIssue(
+                category=DiagnosticCategory.POLYGLOT.value,
+                severity=SeverityLevel.WARNING.value,
+                file_path=str(pkg_json),
+                line=1,
+                column=0,
+                error_code="TZ-NODE-MISSING-NAME",
+                message="package.json is missing top-level 'name' attribute",
+                suggested_fix="Add a unique 'name' attribute to package.json",
+                auto_fixable=False
+            ))
+
+        # Check conflicting lockfiles (e.g. package-lock.json AND yarn.lock AND pnpm-lock.yaml)
+        lock_files = []
+        if (root / "package-lock.json").is_file():
+            lock_files.append("package-lock.json (npm)")
+        if (root / "yarn.lock").is_file():
+            lock_files.append("yarn.lock (yarn)")
+        if (root / "pnpm-lock.yaml").is_file():
+            lock_files.append("pnpm-lock.yaml (pnpm)")
+        if (root / "bun.lockb").is_file():
+            lock_files.append("bun.lockb (bun)")
+
+        if len(lock_files) > 1:
+            issues.append(DiagnosticIssue(
+                category=DiagnosticCategory.POLYGLOT.value,
+                severity=SeverityLevel.WARNING.value,
+                file_path=str(pkg_json),
+                line=None,
+                column=None,
+                error_code="TZ-NODE-CONFLICTING-LOCKFILES",
+                message=f"Multiple conflicting package lockfiles detected: {', '.join(lock_files)}",
+                suggested_fix="Standardize on a single package manager (npm, yarn, pnpm, or bun) and remove unused lockfiles",
+                auto_fixable=False
+            ))
+
+        # Check node_modules existence vs package.json
+        has_deps = bool(data.get("dependencies") or data.get("devDependencies"))
+        if has_deps and not (root / "node_modules").is_dir():
+            issues.append(DiagnosticIssue(
+                category=DiagnosticCategory.POLYGLOT.value,
+                severity=SeverityLevel.ERROR.value,
+                file_path=str(pkg_json),
+                line=None,
+                column=None,
+                error_code="TZ-NODE-MODULES-MISSING",
+                message="package.json defines dependencies but 'node_modules' directory is missing",
+                suggested_fix="Run 'npm install' or 'pnpm install' to install dependencies",
+                auto_fixable=False
+            ))
+
+        # Check tsconfig.json if TypeScript project
+        has_ts = any("typescript" in str(k) for k in list((data.get("devDependencies") or {}).keys()) + list((data.get("dependencies") or {}).keys()))
+        tsconfig = root / "tsconfig.json"
+        if has_ts and not tsconfig.is_file():
+            issues.append(DiagnosticIssue(
+                category=DiagnosticCategory.POLYGLOT.value,
+                severity=SeverityLevel.WARNING.value,
+                file_path=str(root),
+                line=None,
+                column=None,
+                error_code="TZ-TS-MISSING-TSCONFIG",
+                message="TypeScript dependency declared but 'tsconfig.json' is missing in workspace root",
+                suggested_fix="Initialize TypeScript config via 'npx tsc --init'",
+                auto_fixable=False
+            ))
+
+        return issues
+
+    # -------------------------------------------------------------------------
+    # 2. RUST & CARGO DOCTOR
+    # -------------------------------------------------------------------------
+    @classmethod
+    def check_rust_project(cls, workspace_dir: str = ".") -> List[DiagnosticIssue]:
+        """Inspect Cargo.toml and target directory for Rust projects."""
+        issues: List[DiagnosticIssue] = []
+        root = Path(workspace_dir).resolve()
+        cargo_toml = root / "Cargo.toml"
+
+        if not cargo_toml.is_file():
+            return issues
+
+        try:
+            with open(cargo_toml, "r", encoding="utf-8") as f:
+                content = f.read()
+
+            # Check [package] table
+            if "[package]" not in content:
+                issues.append(DiagnosticIssue(
+                    category=DiagnosticCategory.POLYGLOT.value,
+                    severity=SeverityLevel.ERROR.value,
+                    file_path=str(cargo_toml),
+                    line=1,
+                    column=0,
+                    error_code="TZ-RUST-MISSING-PACKAGE",
+                    message="Cargo.toml is missing '[package]' manifest header",
+                    suggested_fix="Add '[package]' section with name, version, and edition",
+                    auto_fixable=False
+                ))
+
+            # Check edition flag (edition = "2021")
+            if "edition =" not in content:
+                issues.append(DiagnosticIssue(
+                    category=DiagnosticCategory.POLYGLOT.value,
+                    severity=SeverityLevel.WARNING.value,
+                    file_path=str(cargo_toml),
+                    line=1,
+                    column=0,
+                    error_code="TZ-RUST-MISSING-EDITION",
+                    message="Cargo.toml does not declare Rust edition (defaults to legacy 2015)",
+                    suggested_fix="Specify modern edition: 'edition = \"2021\"'",
+                    auto_fixable=True,
+                    metadata={"action": "add_cargo_edition", "path": str(cargo_toml)}
+                ))
+
+            # Check target/ directory size bloat (> 1GB)
+            target_dir = root / "target"
+            if target_dir.is_dir():
+                total_b = sum(f.stat().st_size for f in target_dir.glob("**/*") if f.is_file())
+                if total_b > 1024 * 1024 * 1024:  # > 1GB
+                    issues.append(DiagnosticIssue(
+                        category=DiagnosticCategory.CACHE.value,
+                        severity=SeverityLevel.INFO.value,
+                        file_path=str(target_dir),
+                        line=None,
+                        column=None,
+                        error_code="TZ-RUST-TARGET-BLOAT",
+                        message=f"Rust build artifacts in 'target/' consume {round(total_b / (1024**3), 2)}GB",
+                        suggested_fix="Run 'cargo clean' to reclaim disk space",
+                        auto_fixable=False
+                    ))
+        except Exception:
+            pass
+
+        return issues
+
+    # -------------------------------------------------------------------------
+    # 3. GO TOOLCHAIN DOCTOR
+    # -------------------------------------------------------------------------
+    @classmethod
+    def check_go_project(cls, workspace_dir: str = ".") -> List[DiagnosticIssue]:
+        """Inspect go.mod and go.sum files in Go workspaces."""
+        issues: List[DiagnosticIssue] = []
+        root = Path(workspace_dir).resolve()
+        go_mod = root / "go.mod"
+
+        if not go_mod.is_file():
+            return issues
+
+        try:
+            with open(go_mod, "r", encoding="utf-8") as f:
+                content = f.read()
+
+            if not content.startswith("module ") and "\nmodule " not in content:
+                issues.append(DiagnosticIssue(
+                    category=DiagnosticCategory.POLYGLOT.value,
+                    severity=SeverityLevel.ERROR.value,
+                    file_path=str(go_mod),
+                    line=1,
+                    column=0,
+                    error_code="TZ-GO-MISSING-MODULE",
+                    message="go.mod file is missing required 'module <path>' declaration",
+                    suggested_fix="Add 'module <github.com/org/repo>' at top of go.mod",
+                    auto_fixable=False
+                ))
+
+            if "go 1." not in content:
+                issues.append(DiagnosticIssue(
+                    category=DiagnosticCategory.POLYGLOT.value,
+                    severity=SeverityLevel.WARNING.value,
+                    file_path=str(go_mod),
+                    line=1,
+                    column=0,
+                    error_code="TZ-GO-MISSING-VERSION",
+                    message="go.mod does not specify Go language version directive (e.g. 'go 1.22')",
+                    suggested_fix="Add 'go 1.22' directive to go.mod",
+                    auto_fixable=False
+                ))
+        except Exception:
+            pass
+
+        return issues
+
+    # -------------------------------------------------------------------------
+    # 4. DOCKER & CONTAINER DOCTOR
+    # -------------------------------------------------------------------------
+    @classmethod
+    def check_dockerfiles(cls, workspace_dir: str = ".") -> List[DiagnosticIssue]:
+        """Inspect Dockerfile and compose manifests for security and performance smells."""
+        issues: List[DiagnosticIssue] = []
+        root = Path(workspace_dir).resolve()
+
+        dockerfiles = list(root.glob("**/Dockerfile*")) + list(root.glob("**/docker-compose*.yml"))
+        for df in dockerfiles:
+            if not df.is_file() or any(p in df.parts for p in cls.IGNORED_DIRS):
+                continue
+
+            try:
+                with open(df, "r", encoding="utf-8", errors="replace") as f:
+                    lines = f.readlines()
+
+                has_user = False
+                for idx, line in enumerate(lines, start=1):
+                    stripped = line.strip()
+
+                    # Unpinned :latest tag
+                    if stripped.startswith("FROM ") and (":latest" in stripped or ":" not in stripped.split()[1]):
+                        issues.append(DiagnosticIssue(
+                            category=DiagnosticCategory.POLYGLOT.value,
+                            severity=SeverityLevel.WARNING.value,
+                            file_path=str(df),
+                            line=idx,
+                            column=0,
+                            error_code="TZ-DOCKER-LATEST-TAG",
+                            message=f"Unpinned Docker base image in '{stripped}' creates non-reproducible builds",
+                            suggested_fix="Pin base image to specific semantic version tag or digest (e.g. python:3.12-slim)",
+                            auto_fixable=False
+                        ))
+
+                    if stripped.startswith("USER ") and "root" not in stripped:
+                        has_user = True
+
+                # Check root user execution in Dockerfile
+                if df.name.startswith("Dockerfile") and not has_user and len(lines) > 5:
+                    issues.append(DiagnosticIssue(
+                        category=DiagnosticCategory.SECURITY.value,
+                        severity=SeverityLevel.WARNING.value,
+                        file_path=str(df),
+                        line=len(lines),
+                        column=0,
+                        error_code="TZ-DOCKER-ROOT-USER",
+                        message=f"Dockerfile '{df.name}' runs as default 'root' user without non-root USER directive",
+                        suggested_fix="Create and switch to a non-privileged user (e.g. 'USER appuser')",
+                        auto_fixable=False
+                    ))
+            except Exception:
+                continue
+
+        return issues
+
+    # -------------------------------------------------------------------------
+    # 5. GITHUB ACTIONS & CI WORKFLOW DOCTOR
+    # -------------------------------------------------------------------------
+    @classmethod
+    def check_ci_workflows(cls, workspace_dir: str = ".") -> List[DiagnosticIssue]:
+        """Inspect .github/workflows YAML manifests for syntax flaws and security issues."""
+        issues: List[DiagnosticIssue] = []
+        root = Path(workspace_dir).resolve()
+        workflows_dir = root / ".github" / "workflows"
+
+        if not workflows_dir.is_dir():
+            return issues
+
+        for wf in workflows_dir.glob("*.yml"):
+            try:
+                with open(wf, "r", encoding="utf-8", errors="replace") as f:
+                    lines = f.readlines()
+
+                for idx, line in enumerate(lines, start=1):
+                    stripped = line.strip()
+
+                    # Unpinned action version (@master or @main)
+                    if "uses:" in stripped and ("@master" in stripped or "@main" in stripped):
+                        issues.append(DiagnosticIssue(
+                            category=DiagnosticCategory.SECURITY.value,
+                            severity=SeverityLevel.WARNING.value,
+                            file_path=str(wf),
+                            line=idx,
+                            column=0,
+                            error_code="TZ-CI-UNPINNED-ACTION",
+                            message=f"GitHub Action uses mutable branch reference in '{stripped}'",
+                            suggested_fix="Pin action to full immutable commit SHA (e.g. actions/checkout@v4)",
+                            auto_fixable=False
+                        ))
+
+                    # Hardcoded secrets in workflow
+                    if re.search(r"""(?i)(api[_-]?key|password|token)\s*:\s*['"][A-Za-z0-9_\-]{16,}['"]""", stripped):
+                        issues.append(DiagnosticIssue(
+                            category=DiagnosticCategory.SECURITY.value,
+                            severity=SeverityLevel.CRITICAL.value,
+                            file_path=str(wf),
+                            line=idx,
+                            column=0,
+                            error_code="TZ-CI-HARDCODED-SECRET",
+                            message="Hardcoded secret or credential token in GitHub Actions workflow file",
+                            suggested_fix="Move secret to repository settings and reference via ${{ secrets.NAME }}",
+                            auto_fixable=False
+                        ))
+            except Exception:
+                continue
+
+        return issues
+
+    @classmethod
+    def diagnose_workspace(cls, workspace_dir: str = ".") -> List[DiagnosticIssue]:
+        """Run all polyglot ecosystem diagnostic checks."""
+        issues: List[DiagnosticIssue] = []
+        issues.extend(cls.check_nodejs_project(workspace_dir))
+        issues.extend(cls.check_rust_project(workspace_dir))
+        issues.extend(cls.check_go_project(workspace_dir))
+        issues.extend(cls.check_dockerfiles(workspace_dir))
+        issues.extend(cls.check_ci_workflows(workspace_dir))
+        return issues