twining-mcp 1.5.0 → 1.6.0

package/dist/engine/blackboard.d.ts

@@ -56,5 +56,10 @@ export declare class BlackboardEngine {
     recent(n?: number, entry_types?: string[]): Promise<{
         entries: BlackboardEntry[];
     }>;
+    /** Dismiss (remove) blackboard entries by ID. Cleans up embeddings if available. */
+    dismiss(ids: string[]): Promise<{
+        dismissed: string[];
+        not_found: string[];
+    }>;
 }
 //# sourceMappingURL=blackboard.d.ts.map

package/dist/engine/blackboard.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"blackboard.d.ts","sourceRoot":"","sources":["../../src/engine/blackboard.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,EAAE,eAAe,EAAE,MAAM,gCAAgC,CAAC;AAEjE,OAAO,KAAK,EAAE,eAAe,EAAa,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAEnF,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,2BAA2B,CAAC;AAC1D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,gCAAgC,CAAC;AACnE,OAAO,KAAK,EAAE,YAAY,EAAE,sBAAsB,EAAE,MAAM,yBAAyB,CAAC;AACpF,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAE9C,qBAAa,gBAAgB;IAC3B,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAkB;IACxC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAkB;IAC3C,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAsB;IACnD,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAsB;IACnD,OAAO,CAAC,QAAQ,CAAyB;IACzC,OAAO,CAAC,gBAAgB,CAAuB;gBAG7C,KAAK,EAAE,eAAe,EACtB,QAAQ,CAAC,EAAE,QAAQ,GAAG,IAAI,EAC1B,YAAY,CAAC,EAAE,YAAY,GAAG,IAAI,EAClC,YAAY,CAAC,EAAE,YAAY,GAAG,IAAI;IAQpC,wEAAwE;IACxE,WAAW,CAAC,QAAQ,EAAE,QAAQ,EAAE,MAAM,EAAE,aAAa,GAAG,IAAI;IAK5D,gEAAgE;IAC1D,IAAI,CAAC,KAAK,EAAE;QAChB,UAAU,EAAE,MAAM,CAAC;QACnB,OAAO,EAAE,MAAM,CAAC;QAChB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;QAChB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;QACtB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,SAAS,CAAC,EAAE,OAAO,CAAC;KACrB,GAAG,OAAO,CAAC;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,CAAC;IAiE9C,qDAAqD;IAC/C,IAAI,CAAC,OAAO,CAAC,EAAE;QACnB,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;QACvB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;QAChB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,KAAK,CAAC,EAAE,MAAM,CAAC;KAChB,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAC;QAAC,WAAW,EAAE,MAAM,CAAA;KAAE,CAAC;IAUhE,oEAAoE;IAC9D,KAAK,CACT,KAAK,EAAE,MAAM,EACb,OAAO,CAAC,EAAE;QAAE,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;QAAC,KAAK,CAAC,EAAE,MAAM,CAAA;KAAE,GACnD,OAAO,CAAC;QACT,OAAO,EAAE,sBAAsB,EAAE,CAAC;QAClC,aAAa,EAAE,OAAO,CAAC;KACxB,CAAC;IAcF,kEAAkE;IAC5D,MAAM,CACV,CAAC,CAAC,EAAE,MAAM,EACV,WAAW,CAAC,EAAE,MAAM,EAAE,GACrB,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAA;KAAE,CAAC;CAI3C"}
+{"version":3,"file":"blackboard.d.ts","sourceRoot":"","sources":["../../src/engine/blackboard.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AACH,OAAO,EAAE,eAAe,EAAE,MAAM,gCAAgC,CAAC;AAEjE,OAAO,KAAK,EAAE,eAAe,EAAa,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAEnF,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,2BAA2B,CAAC;AAC1D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,gCAAgC,CAAC;AACnE,OAAO,KAAK,EAAE,YAAY,EAAE,sBAAsB,EAAE,MAAM,yBAAyB,CAAC;AACpF,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAE9C,qBAAa,gBAAgB;IAC3B,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAkB;IACxC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAkB;IAC3C,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAsB;IACnD,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAsB;IACnD,OAAO,CAAC,QAAQ,CAAyB;IACzC,OAAO,CAAC,gBAAgB,CAAuB;gBAG7C,KAAK,EAAE,eAAe,EACtB,QAAQ,CAAC,EAAE,QAAQ,GAAG,IAAI,EAC1B,YAAY,CAAC,EAAE,YAAY,GAAG,IAAI,EAClC,YAAY,CAAC,EAAE,YAAY,GAAG,IAAI;IAQpC,wEAAwE;IACxE,WAAW,CAAC,QAAQ,EAAE,QAAQ,EAAE,MAAM,EAAE,aAAa,GAAG,IAAI;IAK5D,gEAAgE;IAC1D,IAAI,CAAC,KAAK,EAAE;QAChB,UAAU,EAAE,MAAM,CAAC;QACnB,OAAO,EAAE,MAAM,CAAC;QAChB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;QAChB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,UAAU,CAAC,EAAE,MAAM,EAAE,CAAC;QACtB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,SAAS,CAAC,EAAE,OAAO,CAAC;KACrB,GAAG,OAAO,CAAC;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE,CAAC;IAiE9C,qDAAqD;IAC/C,IAAI,CAAC,OAAO,CAAC,EAAE;QACnB,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;QACvB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;QAChB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,KAAK,CAAC,EAAE,MAAM,CAAC;KAChB,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAC;QAAC,WAAW,EAAE,MAAM,CAAA;KAAE,CAAC;IAUhE,oEAAoE;IAC9D,KAAK,CACT,KAAK,EAAE,MAAM,EACb,OAAO,CAAC,EAAE;QAAE,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;QAAC,KAAK,CAAC,EAAE,MAAM,CAAA;KAAE,GACnD,OAAO,CAAC;QACT,OAAO,EAAE,sBAAsB,EAAE,CAAC;QAClC,aAAa,EAAE,OAAO,CAAC;KACxB,CAAC;IAcF,kEAAkE;IAC5D,MAAM,CACV,CAAC,CAAC,EAAE,MAAM,EACV,WAAW,CAAC,EAAE,MAAM,EAAE,GACrB,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAA;KAAE,CAAC;IAK1C,oFAAoF;IAC9E,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC;QAAE,SAAS,EAAE,MAAM,EAAE,CAAC;QAAC,SAAS,EAAE,MAAM,EAAE,CAAA;KAAE,CAAC;CAkBpF"}

package/dist/engine/blackboard.js

@@ -102,5 +102,22 @@ export class BlackboardEngine {
         const entries = await this.store.recent(n, entry_types);
         return { entries };
     }
+    /** Dismiss (remove) blackboard entries by ID. Cleans up embeddings if available. */
+    async dismiss(ids) {
+        if (!ids || ids.length === 0) {
+            throw new TwiningError("At least one entry ID is required", "INVALID_INPUT");
+        }
+        const result = await this.store.dismiss(ids);
+        // Clean up embeddings for dismissed entries (best-effort)
+        if (this.indexManager && result.dismissed.length > 0) {
+            try {
+                await this.indexManager.removeEntries("blackboard", result.dismissed);
+            }
+            catch {
+                // Best-effort — don't fail dismiss if embedding cleanup fails
+            }
+        }
+        return result;
+    }
 }
 //# sourceMappingURL=blackboard.js.map

package/dist/engine/blackboard.js.map

@@ -1 +1 @@
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package/dist/engine/decisions.d.ts

@@ -122,6 +122,19 @@ export declare class DecisionEngine {
         old_summary: string;
         new_decision_id?: string;
     }>;
+    /**
+     * Promote provisional decisions to active status.
+     * Only provisional decisions can be promoted.
+     */
+    promote(decisionIds: string[], promotedBy?: string): Promise<{
+        promoted: string[];
+        already_active: string[];
+        not_found: string[];
+        wrong_status: Array<{
+            id: string;
+            status: string;
+        }>;
+    }>;
     /**
      * Search decisions across all scopes by keyword or semantic similarity.
      * Supports filtering by domain, status, and confidence.

package/dist/engine/decisions.d.ts.map

@@ -1 +1 @@
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package/dist/engine/decisions.js

@@ -450,6 +450,46 @@ export class DecisionEngine {
         }
         return result;
     }
+    /**
+     * Promote provisional decisions to active status.
+     * Only provisional decisions can be promoted.
+     */
+    async promote(decisionIds, promotedBy) {
+        const result = {
+            promoted: [],
+            already_active: [],
+            not_found: [],
+            wrong_status: [],
+        };
+        for (const id of decisionIds) {
+            const decision = await this.decisionStore.get(id);
+            if (!decision) {
+                result.not_found.push(id);
+                continue;
+            }
+            if (decision.status === "active") {
+                result.already_active.push(id);
+                continue;
+            }
+            if (decision.status !== "provisional") {
+                result.wrong_status.push({ id, status: decision.status });
+                continue;
+            }
+            await this.decisionStore.updateStatus(id, "active");
+            result.promoted.push(id);
+        }
+        // Post a single status entry if any were promoted
+        if (result.promoted.length > 0) {
+            await this.blackboardEngine.post({
+                entry_type: "status",
+                summary: `Promoted ${result.promoted.length} provisional decision(s) to active`.slice(0, 200),
+                detail: `Decision IDs: ${result.promoted.join(", ")}`,
+                scope: "project",
+                agent_id: promotedBy ?? "main",
+            });
+        }
+        return result;
+    }
     /**
      * Search decisions across all scopes by keyword or semantic similarity.
      * Supports filtering by domain, status, and confidence.

package/dist/engine/decisions.js.map

@@ -1 +1 @@
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package/dist/engine/graph.d.ts

@@ -60,5 +60,20 @@ export declare class GraphEngine {
     }>): Promise<TestCoverageResult>;
     /** Resolve an entity by ID or name. Returns undefined if not found. */
     private resolveEntity;
+    /**
+     * Remove orphaned entities (entities with no relations).
+     * Optionally filter by entity type.
+     */
+    prune(entityTypes?: string[], dryRun?: boolean): Promise<{
+        pruned: Array<{
+            id: string;
+            name: string;
+            type: string;
+        }>;
+        total_orphans_found: number;
+        total_removed: number;
+        removed_relations: number;
+        dry_run: boolean;
+    }>;
 }
 //# sourceMappingURL=graph.d.ts.map

package/dist/engine/graph.d.ts.map

@@ -1 +1 @@
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package/dist/engine/graph.js

@@ -162,5 +162,45 @@ export class GraphEngine {
         const byName = await this.graphStore.getEntityByName(idOrName);
         return byName[0];
     }
+    /**
+     * Remove orphaned entities (entities with no relations).
+     * Optionally filter by entity type.
+     */
+    async prune(entityTypes, dryRun = false) {
+        const entities = await this.graphStore.getEntities();
+        const relations = await this.graphStore.getRelations();
+        // Find all entity IDs that participate in at least one relation
+        const connectedIds = new Set();
+        for (const r of relations) {
+            connectedIds.add(r.source);
+            connectedIds.add(r.target);
+        }
+        // Find orphans
+        let orphans = entities.filter((e) => !connectedIds.has(e.id));
+        const total_orphans_found = orphans.length;
+        // Filter by type if requested
+        if (entityTypes && entityTypes.length > 0) {
+            const typeSet = new Set(entityTypes);
+            orphans = orphans.filter((e) => typeSet.has(e.type));
+        }
+        if (orphans.length === 0 || dryRun) {
+            return {
+                pruned: orphans.map((e) => ({ id: e.id, name: e.name, type: e.type })),
+                total_orphans_found,
+                total_removed: 0,
+                removed_relations: 0,
+                dry_run: dryRun,
+            };
+        }
+        const orphanIds = new Set(orphans.map((e) => e.id));
+        const { removedEntities, removedRelations } = await this.graphStore.removeEntities(orphanIds);
+        return {
+            pruned: orphans.map((e) => ({ id: e.id, name: e.name, type: e.type })),
+            total_orphans_found,
+            total_removed: removedEntities,
+            removed_relations: removedRelations,
+            dry_run: false,
+        };
+    }
 }
 //# sourceMappingURL=graph.js.map

package/dist/engine/graph.js.map

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package/dist/storage/blackboard-store.d.ts

@@ -21,5 +21,10 @@ export declare class BlackboardStore {
     }>;
     /** Get the N most recent entries, optionally filtered by type. */
     recent(n?: number, entry_types?: string[]): Promise<BlackboardEntry[]>;
+    /** Remove entries by ID. Returns the IDs that were actually found and removed. */
+    dismiss(ids: string[]): Promise<{
+        dismissed: string[];
+        not_found: string[];
+    }>;
 }
 //# sourceMappingURL=blackboard-store.d.ts.map

package/dist/storage/blackboard-store.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"blackboard-store.d.ts","sourceRoot":"","sources":["../../src/storage/blackboard-store.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAC;AAEzD,qBAAa,eAAe;IAC1B,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAS;IACxC,OAAO,CAAC,aAAa,CAAkC;IACvD,OAAO,CAAC,WAAW,CAAa;gBAEpB,UAAU,EAAE,MAAM;IAI9B,mEAAmE;YACrD,OAAO;IAuBrB,uDAAuD;IACjD,MAAM,CACV,KAAK,EAAE,IAAI,CAAC,eAAe,EAAE,IAAI,GAAG,WAAW,CAAC,GAC/C,OAAO,CAAC,eAAe,CAAC;IAY3B,0CAA0C;IACpC,IAAI,CAAC,OAAO,CAAC,EAAE;QACnB,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;QACvB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;QAChB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,KAAK,CAAC,EAAE,MAAM,CAAC;KAChB,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAC;QAAC,WAAW,EAAE,MAAM,CAAA;KAAE,CAAC;IAqChE,kEAAkE;IAC5D,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,eAAe,EAAE,CAAC;CAU7E"}
+{"version":3,"file":"blackboard-store.d.ts","sourceRoot":"","sources":["../../src/storage/blackboard-store.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,mBAAmB,CAAC;AAEzD,qBAAa,eAAe;IAC1B,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAS;IACxC,OAAO,CAAC,aAAa,CAAkC;IACvD,OAAO,CAAC,WAAW,CAAa;gBAEpB,UAAU,EAAE,MAAM;IAI9B,mEAAmE;YACrD,OAAO;IAuBrB,uDAAuD;IACjD,MAAM,CACV,KAAK,EAAE,IAAI,CAAC,eAAe,EAAE,IAAI,GAAG,WAAW,CAAC,GAC/C,OAAO,CAAC,eAAe,CAAC;IAY3B,0CAA0C;IACpC,IAAI,CAAC,OAAO,CAAC,EAAE;QACnB,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;QACvB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;QAChB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,KAAK,CAAC,EAAE,MAAM,CAAC;KAChB,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,eAAe,EAAE,CAAC;QAAC,WAAW,EAAE,MAAM,CAAA;KAAE,CAAC;IAqChE,kEAAkE;IAC5D,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,eAAe,EAAE,CAAC;IAW5E,kFAAkF;IAC5E,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC;QAAE,SAAS,EAAE,MAAM,EAAE,CAAC;QAAC,SAAS,EAAE,MAAM,EAAE,CAAA;KAAE,CAAC;CA+CpF"}

package/dist/storage/blackboard-store.js

@@ -82,5 +82,49 @@ export class BlackboardStore {
         const count = n ?? 20;
         return entries.slice(-count).reverse();
     }
+    /** Remove entries by ID. Returns the IDs that were actually found and removed. */
+    async dismiss(ids) {
+        const idSet = new Set(ids);
+        const bbPath = this.blackboardPath;
+        if (!fs.existsSync(bbPath)) {
+            return { dismissed: [], not_found: ids };
+        }
+        const lockfileModule = await import("proper-lockfile");
+        const release = await lockfileModule.default.lock(bbPath, {
+            retries: { retries: 10, factor: 1.5, minTimeout: 50, maxTimeout: 1000 },
+            stale: 10000,
+        });
+        try {
+            const content = fs.readFileSync(bbPath, "utf-8");
+            const lines = content.split("\n").filter((line) => line.trim().length > 0);
+            const kept = [];
+            const dismissed = [];
+            for (const line of lines) {
+                try {
+                    const entry = JSON.parse(line);
+                    if (idSet.has(entry.id)) {
+                        dismissed.push(entry.id);
+                    }
+                    else {
+                        kept.push(line);
+                    }
+                }
+                catch {
+                    kept.push(line); // Preserve unparseable lines
+                }
+            }
+            const not_found = ids.filter((id) => !dismissed.includes(id));
+            if (dismissed.length > 0) {
+                const newContent = kept.length > 0 ? kept.join("\n") + "\n" : "";
+                fs.writeFileSync(bbPath, newContent);
+                // Invalidate cache
+                this.cachedEntries = null;
+            }
+            return { dismissed, not_found };
+        }
+        finally {
+            await release();
+        }
+    }
 }
 //# sourceMappingURL=blackboard-store.js.map

package/dist/storage/blackboard-store.js.map

@@ -1 +1 @@
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package/dist/storage/graph-store.d.ts

@@ -35,5 +35,13 @@ export declare class GraphStore {
     getEntityById(id: string): Promise<Entity | undefined>;
     /** Find entities by name, optionally filtered by type. */
     getEntityByName(name: string, type?: string): Promise<Entity[]>;
+    /**
+     * Remove entities by ID, along with any relations that reference them.
+     * Returns the count of removed entities and relations.
+     */
+    removeEntities(entityIds: Set<string>): Promise<{
+        removedEntities: number;
+        removedRelations: number;
+    }>;
 }
 //# sourceMappingURL=graph-store.d.ts.map

package/dist/storage/graph-store.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"graph-store.d.ts","sourceRoot":"","sources":["../../src/storage/graph-store.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,mBAAmB,CAAC;AAS1D,qBAAa,UAAU;IACrB,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAS;IACtC,OAAO,CAAC,QAAQ,CAAC,aAAa,CAAS;IACvC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAS;gBAEtB,UAAU,EAAE,MAAM;IAM9B,8CAA8C;IAC9C,OAAO,CAAC,WAAW;IAYnB;;;;OAIG;IACG,SAAS,CAAC,KAAK,EAAE;QACrB,IAAI,EAAE,MAAM,CAAC;QACb,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;QACrB,UAAU,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;KACrC,GAAG,OAAO,CAAC,MAAM,CAAC;IAgDnB;;;;OAIG;IACG,WAAW,CAAC,KAAK,EAAE;QACvB,MAAM,EAAE,MAAM,CAAC;QACf,MAAM,EAAE,MAAM,CAAC;QACf,IAAI,EAAE,QAAQ,CAAC,MAAM,CAAC,CAAC;QACvB,UAAU,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;KACrC,GAAG,OAAO,CAAC,QAAQ,CAAC;IA0DrB,0DAA0D;IACpD,WAAW,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC;IAOtC,2DAA2D;IACrD,YAAY,IAAI,OAAO,CAAC,QAAQ,EAAE,CAAC;IAOzC,yDAAyD;IACnD,aAAa,CAAC,EAAE,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC;IAK5D,0DAA0D;IACpD,eAAe,CACnB,IAAI,EAAE,MAAM,EACZ,IAAI,CAAC,EAAE,MAAM,GACZ,OAAO,CAAC,MAAM,EAAE,CAAC;CAMrB"}
+{"version":3,"file":"graph-store.d.ts","sourceRoot":"","sources":["../../src/storage/graph-store.ts"],"names":[],"mappings":"AASA,OAAO,KAAK,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,mBAAmB,CAAC;AAS1D,qBAAa,UAAU;IACrB,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAS;IACtC,OAAO,CAAC,QAAQ,CAAC,aAAa,CAAS;IACvC,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAS;gBAEtB,UAAU,EAAE,MAAM;IAM9B,8CAA8C;IAC9C,OAAO,CAAC,WAAW;IAYnB;;;;OAIG;IACG,SAAS,CAAC,KAAK,EAAE;QACrB,IAAI,EAAE,MAAM,CAAC;QACb,IAAI,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;QACrB,UAAU,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;KACrC,GAAG,OAAO,CAAC,MAAM,CAAC;IAgDnB;;;;OAIG;IACG,WAAW,CAAC,KAAK,EAAE;QACvB,MAAM,EAAE,MAAM,CAAC;QACf,MAAM,EAAE,MAAM,CAAC;QACf,IAAI,EAAE,QAAQ,CAAC,MAAM,CAAC,CAAC;QACvB,UAAU,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;KACrC,GAAG,OAAO,CAAC,QAAQ,CAAC;IA0DrB,0DAA0D;IACpD,WAAW,IAAI,OAAO,CAAC,MAAM,EAAE,CAAC;IAOtC,2DAA2D;IACrD,YAAY,IAAI,OAAO,CAAC,QAAQ,EAAE,CAAC;IAOzC,yDAAyD;IACnD,aAAa,CAAC,EAAE,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC;IAK5D,0DAA0D;IACpD,eAAe,CACnB,IAAI,EAAE,MAAM,EACZ,IAAI,CAAC,EAAE,MAAM,GACZ,OAAO,CAAC,MAAM,EAAE,CAAC;IAOpB;;;OAGG;IACG,cAAc,CAClB,SAAS,EAAE,GAAG,CAAC,MAAM,CAAC,GACrB,OAAO,CAAC;QAAE,eAAe,EAAE,MAAM,CAAC;QAAC,gBAAgB,EAAE,MAAM,CAAA;KAAE,CAAC;CAiDlE"}

package/dist/storage/graph-store.js

@@ -139,5 +139,38 @@ export class GraphStore {
         const entities = await this.getEntities();
         return entities.filter((e) => e.name === name && (type === undefined || e.type === type));
     }
+    /**
+     * Remove entities by ID, along with any relations that reference them.
+     * Returns the count of removed entities and relations.
+     */
+    async removeEntities(entityIds) {
+        this.ensureFiles();
+        let removedEntities = 0;
+        let removedRelations = 0;
+        // Lock both files — entities first, then relations
+        const releaseEntities = await lockfile.lock(this.entitiesPath, LOCK_OPTIONS);
+        try {
+            const entities = JSON.parse(fs.readFileSync(this.entitiesPath, "utf-8"));
+            const before = entities.length;
+            const kept = entities.filter((e) => !entityIds.has(e.id));
+            removedEntities = before - kept.length;
+            fs.writeFileSync(this.entitiesPath, JSON.stringify(kept, null, 2));
+        }
+        finally {
+            await releaseEntities();
+        }
+        const releaseRelations = await lockfile.lock(this.relationsPath, LOCK_OPTIONS);
+        try {
+            const relations = JSON.parse(fs.readFileSync(this.relationsPath, "utf-8"));
+            const before = relations.length;
+            const kept = relations.filter((r) => !entityIds.has(r.source) && !entityIds.has(r.target));
+            removedRelations = before - kept.length;
+            fs.writeFileSync(this.relationsPath, JSON.stringify(kept, null, 2));
+        }
+        finally {
+            await releaseRelations();
+        }
+        return { removedEntities, removedRelations };
+    }
 }
 //# sourceMappingURL=graph-store.js.map

package/dist/storage/graph-store.js.map

@@ -1 +1 @@
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package/dist/tools/blackboard-tools.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"blackboard-tools.d.ts","sourceRoot":"","sources":["../../src/tools/blackboard-tools.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAIhE,wBAAgB,uBAAuB,CACrC,MAAM,EAAE,SAAS,EACjB,MAAM,EAAE,gBAAgB,GACvB,IAAI,CA4JN"}
+{"version":3,"file":"blackboard-tools.d.ts","sourceRoot":"","sources":["../../src/tools/blackboard-tools.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,yBAAyB,CAAC;AAIhE,wBAAgB,uBAAuB,CACrC,MAAM,EAAE,SAAS,EACjB,MAAM,EAAE,gBAAgB,GACvB,IAAI,CA6LN"}

package/dist/tools/blackboard-tools.js

@@ -130,5 +130,30 @@ export function registerBlackboardTools(server, engine) {
             return toolError(e instanceof Error ? e.message : "Unknown error", "INTERNAL_ERROR");
         }
     });
+    // twining_dismiss — Remove specific blackboard entries by ID
+    server.registerTool("twining_dismiss", {
+        description: "Remove specific blackboard entries by ID. Use this to clean up false-positive warnings, resolved entries, or other noise. Returns which IDs were dismissed and which were not found.",
+        inputSchema: {
+            ids: z
+                .array(z.string())
+                .min(1)
+                .describe("Entry IDs to remove from the blackboard"),
+            reason: z
+                .string()
+                .optional()
+                .describe("Why these entries are being dismissed (logged but not stored)"),
+        },
+    }, async (args) => {
+        try {
+            const result = await engine.dismiss(args.ids);
+            return toolResult(result);
+        }
+        catch (e) {
+            if (e instanceof TwiningError) {
+                return toolError(e.message, e.code);
+            }
+            return toolError(e instanceof Error ? e.message : "Unknown error", "INTERNAL_ERROR");
+        }
+    });
 }
 //# sourceMappingURL=blackboard-tools.js.map

package/dist/tools/blackboard-tools.js.map

@@ -1 +1 @@
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+{"version":3,"file":"blackboard-tools.js","sourceRoot":"","sources":["../../src/tools/blackboard-tools.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAChD,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAEzE,MAAM,UAAU,uBAAuB,CACrC,MAAiB,EACjB,MAAwB;IAExB,wDAAwD;IACxD,MAAM,CAAC,YAAY,CACjB,cAAc,EACd;QACE,WAAW,EACT,6NAA6N;QAC/N,WAAW,EAAE;YACX,UAAU,EAAE,CAAC,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC,0BAA0B,CAAC;YACpE,OAAO,EAAE,CAAC;iBACP,MAAM,EAAE;iBACR,GAAG,CAAC,GAAG,CAAC;iBACR,QAAQ,CAAC,kCAAkC,CAAC;YAC/C,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0BAA0B,CAAC;YAClE,IAAI,EAAE,CAAC;iBACJ,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;iBACjB,QAAQ,EAAE;iBACV,QAAQ,CAAC,2BAA2B,CAAC;YACxC,KAAK,EAAE,CAAC;iBACL,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,sCAAsC,CAAC;YACnD,UAAU,EAAE,CAAC;iBACV,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;iBACjB,QAAQ,EAAE;iBACV,QAAQ,CAAC,wBAAwB,CAAC;YACrC,QAAQ,EAAE,CAAC;iBACR,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,kCAAkC,CAAC;SAChD;KACF,EACD,KAAK,EAAE,IAAI,EAAE,EAAE;QACb,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YACvC,OAAO,UAAU,CAAC,MAAM,CAAC,CAAC;QAC5B,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,IAAI,CAAC,YAAY,YAAY,EAAE,CAAC;gBAC9B,OAAO,SAAS,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;YACtC,CAAC;YACD,OAAO,SAAS,CACd,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe,EAChD,gBAAgB,CACjB,CAAC;QACJ,CAAC;IACH,CAAC,CACF,CAAC;IAEF,+DAA+D;IAC/D,MAAM,CAAC,YAAY,CACjB,cAAc,EACd;QACE,WAAW,EACT,mJAAmJ;QACrJ,WAAW,EAAE;YACX,WAAW,EAAE,CAAC;iBACX,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;iBACjB,QAAQ,EAAE;iBACV,QAAQ,CAAC,yBAAyB,CAAC;YACtC,IAAI,EAAE,CAAC;iBACJ,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;iBACjB,QAAQ,EAAE;iBACV,QAAQ,CAAC,2BAA2B,CAAC;YACxC,KAAK,EAAE,CAAC;iBACL,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,gCAAgC,CAAC;YAC7C,KAAK,EAAE,CAAC;iBACL,MAAM,EAAE;iBACR,MAAM,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,EAAE;gBACxC,OAAO,EAAE,oCAAoC;aAC9C,CAAC;iBACD,QAAQ,EAAE;iBACV,QAAQ,CAAC,4CAA4C,CAAC;YACzD,KAAK,EAAE,CAAC;iBACL,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,qCAAqC,CAAC;SACnD;KACF,EACD,KAAK,EAAE,IAAI,EAAE,EAAE;QACb,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YACvC,OAAO,UAAU,CAAC,MAAM,CAAC,CAAC;QAC5B,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,OAAO,SAAS,CACd,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe,EAChD,gBAAgB,CACjB,CAAC;QACJ,CAAC;IACH,CAAC,CACF,CAAC;IAEF,4DAA4D;IAC5D,MAAM,CAAC,YAAY,CACjB,eAAe,EACf;QACE,WAAW,EACT,+IAA+I;QACjJ,WAAW,EAAE;YACX,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wBAAwB,CAAC;YACpD,WAAW,EAAE,CAAC;iBACX,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;iBACjB,QAAQ,EAAE;iBACV,QAAQ,CAAC,sBAAsB,CAAC;YACnC,KAAK,EAAE,CAAC;iBACL,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,2BAA2B,CAAC;SACzC;KACF,EACD,KAAK,EAAE,IAAI,EAAE,EAAE;QACb,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,EAAE;gBAC5C,WAAW,EAAE,IAAI,CAAC,WAAW;gBAC7B,KAAK,EAAE,IAAI,CAAC,KAAK;aAClB,CAAC,CAAC;YACH,OAAO,UAAU,CAAC,MAAM,CAAC,CAAC;QAC5B,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,OAAO,SAAS,CACd,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe,EAChD,gBAAgB,CACjB,CAAC;QACJ,CAAC;IACH,CAAC,CACF,CAAC;IAEF,kDAAkD;IAClD,MAAM,CAAC,YAAY,CACjB,gBAAgB,EAChB;QACE,WAAW,EACT,sGAAsG;QACxG,WAAW,EAAE;YACX,CAAC,EAAE,CAAC;iBACD,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,2CAA2C,CAAC;YACxD,WAAW,EAAE,CAAC;iBACX,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;iBACjB,QAAQ,EAAE;iBACV,QAAQ,CAAC,sBAAsB,CAAC;SACpC;KACF,EACD,KAAK,EAAE,IAAI,EAAE,EAAE;QACb,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,EAAE,IAAI,CAAC,WAAW,CAAC,CAAC;YAC7D,OAAO,UAAU,CAAC,MAAM,CAAC,CAAC;QAC5B,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,OAAO,SAAS,CACd,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe,EAChD,gBAAgB,CACjB,CAAC;QACJ,CAAC;IACH,CAAC,CACF,CAAC;IAEF,6DAA6D;IAC7D,MAAM,CAAC,YAAY,CACjB,iBAAiB,EACjB;QACE,WAAW,EACT,sLAAsL;QACxL,WAAW,EAAE;YACX,GAAG,EAAE,CAAC;iBACH,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;iBACjB,GAAG,CAAC,CAAC,CAAC;iBACN,QAAQ,CAAC,yCAAyC,CAAC;YACtD,MAAM,EAAE,CAAC;iBACN,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,+DAA+D,CAAC;SAC7E;KACF,EACD,KAAK,EAAE,IAAI,EAAE,EAAE;QACb,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YAC9C,OAAO,UAAU,CAAC,MAAM,CAAC,CAAC;QAC5B,CAAC;QAAC,OAAO,CAAC,EAAE,CAAC;YACX,IAAI,CAAC,YAAY,YAAY,EAAE,CAAC;gBAC9B,OAAO,SAAS,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;YACtC,CAAC;YACD,OAAO,SAAS,CACd,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,eAAe,EAChD,gBAAgB,CACjB,CAAC;QACJ,CAAC;IACH,CAAC,CACF,CAAC;AACJ,CAAC"}

package/dist/tools/decision-tools.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"decision-tools.d.ts","sourceRoot":"","sources":["../../src/tools/decision-tools.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,wBAAwB,CAAC;AAG7D,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,SAAS,EACjB,MAAM,EAAE,cAAc,GACrB,IAAI,CA2VN"}
+{"version":3,"file":"decision-tools.d.ts","sourceRoot":"","sources":["../../src/tools/decision-tools.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,wBAAwB,CAAC;AAG7D,wBAAgB,qBAAqB,CACnC,MAAM,EAAE,SAAS,EACjB,MAAM,EAAE,cAAc,GACrB,IAAI,CA+XN"}

package/dist/tools/decision-tools.js

@@ -1,6 +1,6 @@
 /**
  * MCP tool handlers for decision operations.
- * Registers twining_decide, twining_why, twining_commits, twining_trace, twining_reconsider, twining_override.
+ * Registers twining_decide, twining_why, twining_commits, twining_trace, twining_reconsider, twining_override, twining_promote.
  */
 import { z } from "zod";
 import { toolResult, toolError, TwiningError } from "../utils/errors.js";
@@ -175,6 +175,31 @@ export function registerDecisionTools(server, engine) {
             return toolError(e instanceof Error ? e.message : "Unknown error", "INTERNAL_ERROR");
         }
     });
+    // twining_promote — Promote provisional decisions to active
+    server.registerTool("twining_promote", {
+        description: "Promote one or more provisional decisions to active status. Use this to confirm provisional decisions that have been validated through implementation and testing.",
+        inputSchema: {
+            decision_ids: z
+                .array(z.string())
+                .min(1)
+                .describe("IDs of provisional decisions to promote to active"),
+            promoted_by: z
+                .string()
+                .optional()
+                .describe('Who is promoting (default: "main")'),
+        },
+    }, async (args) => {
+        try {
+            const result = await engine.promote(args.decision_ids, args.promoted_by);
+            return toolResult(result);
+        }
+        catch (e) {
+            if (e instanceof TwiningError) {
+                return toolError(e.message, e.code);
+            }
+            return toolError(e instanceof Error ? e.message : "Unknown error", "INTERNAL_ERROR");
+        }
+    });
     // twining_commits — Query decisions by commit hash
     server.registerTool("twining_commits", {
         description: "Query decisions by commit hash. Returns all decisions that were linked to a given commit, enabling traceability from code changes back to decision rationale.",

package/dist/tools/decision-tools.js.map

@@ -1 +1 @@
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package/dist/tools/graph-tools.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"graph-tools.d.ts","sourceRoot":"","sources":["../../src/tools/graph-tools.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AAGtD,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,SAAS,EACjB,MAAM,EAAE,WAAW,GAClB,IAAI,CA0KN"}
+{"version":3,"file":"graph-tools.d.ts","sourceRoot":"","sources":["../../src/tools/graph-tools.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AAGtD,wBAAgB,kBAAkB,CAChC,MAAM,EAAE,SAAS,EACjB,MAAM,EAAE,WAAW,GAClB,IAAI,CAkNN"}

package/dist/tools/graph-tools.js

@@ -1,6 +1,6 @@
 /**
  * MCP tool handlers for knowledge graph operations.
- * Registers twining_add_entity, twining_add_relation, twining_neighbors, twining_graph_query.
+ * Registers twining_add_entity, twining_add_relation, twining_neighbors, twining_graph_query, twining_prune_graph.
  */
 import { z } from "zod";
 import { toolResult, toolError, TwiningError } from "../utils/errors.js";
@@ -125,5 +125,30 @@ export function registerGraphTools(server, engine) {
             return toolError(e instanceof Error ? e.message : "Unknown error", "INTERNAL_ERROR");
         }
     });
+    // twining_prune_graph — Remove orphaned graph entities
+    server.registerTool("twining_prune_graph", {
+        description: "Remove orphaned knowledge graph entities that have no relations. Use this to clean up stale or disconnected entities. Optionally filter by entity type to only prune certain kinds.",
+        inputSchema: {
+            entity_types: z
+                .array(z.string())
+                .optional()
+                .describe('Only prune orphans of these types (e.g., ["concept", "file"]). If omitted, prunes all orphan types.'),
+            dry_run: z
+                .boolean()
+                .optional()
+                .describe("If true, report orphans without removing them (default: false)"),
+        },
+    }, async (args) => {
+        try {
+            const result = await engine.prune(args.entity_types, args.dry_run ?? false);
+            return toolResult(result);
+        }
+        catch (e) {
+            if (e instanceof TwiningError) {
+                return toolError(e.message, e.code);
+            }
+            return toolError(e instanceof Error ? e.message : "Unknown error", "INTERNAL_ERROR");
+        }
+    });
 }
 //# sourceMappingURL=graph-tools.js.map

package/dist/tools/graph-tools.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "twining-mcp",
-  "version": "1.5.0",
+  "version": "1.6.0",
   "description": "Agent coordination MCP server — shared blackboard, decision tracking, and context assembly",
   "main": "dist/index.js",
   "type": "module",
@@ -52,7 +52,7 @@
     "zod": "^3.25.0"
   },
   "optionalDependencies": {
-    "posthog-node": "^4.0.0"
+    "posthog-node": "^4.18.0"
   },
   "devDependencies": {
     "@types/js-yaml": "^4.0.9",