npm - trace-to-skill - Versions diffs - 0.1.80 → 0.1.81 - Mend

trace-to-skill 0.1.80 → 0.1.81

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (20) hide show

package/README.md +6 -3
package/dist/src/benchmark.js +6 -0
package/dist/src/benchmark.js.map +1 -1
package/dist/src/demo.js +8 -0
package/dist/src/demo.js.map +1 -1
package/dist/src/rules.js +22 -0
package/dist/src/rules.js.map +1 -1
package/dist/src/types.d.ts +1 -1
package/docs/BENCHMARK.md +1 -0
package/docs/CODEX_ISSUE_MAP.md +3 -0
package/docs/DEMO.md +2 -0
package/docs/DISCOVERY.md +2 -1
package/docs/FAILURE_TAXONOMY.md +8 -0
package/docs/OPENAI_OSS_BRIEF.md +6 -6
package/docs/SCORECARD.md +2 -1
package/docs/USE_CASES.md +25 -10
package/fixtures/codex-hooks-runtime.md +25 -0
package/llms.txt +3 -1
package/package.json +6 -1
package/schemas/analysis-result.schema.json +1 -0

package/README.md CHANGED Viewed

@@ -81,6 +81,7 @@ Use it when you need to:
 - **Diagnose stale connector auth/cache:** run `trace-to-skill codex-report ./runs` when Codex app connectors return `401 Reauthentication required`, keep the same `link_*`, report `isAccessible: false`, or survive restart/plugin reinstall/cache clearing.
 - **Explain missing MCP tools across Codex surfaces:** run `trace-to-skill codex-report ./runs` when MCP servers work in CLI or user-global config but are absent in VS Code, Desktop, WSL, or project-local sessions.
 - **Diagnose Streamable HTTP MCP failures:** run `trace-to-skill codex-report ./runs` when Penpot, n8n, DingTalk, or another HTTP/SSE MCP server initializes but fails response parsing, handshakes, OAuth gating, stale session reuse, missing headers, or reconnects.
+- **Triage Codex hooks failures:** run `trace-to-skill codex-report ./runs` when hooks duplicate, stop firing after rate limits or live edits, emit stale `codex_hooks` warnings, skip Code Mode/Windows/Desktop surfaces, or become unusable in the Hooks settings page.
 - **Report terminal output and scrollback integrity failures:** run `trace-to-skill codex-report ./runs` when Codex terminal output disappears, gets overwritten, truncates numbered lines, snaps scrollback to the bottom, or only survives in logs/transcripts.
 - **Triage subagent lifecycle drift:** run `trace-to-skill codex-report ./runs` when completed or closed subagents stay visible, stale spawn edges remain open, child threads crowd the recent list, `agent thread limit reached` blocks new work, or compaction loses prior subagent IDs.
 - **Reduce approval friction:** run `trace-to-skill analyze ./runs` when `Approve for this session` is not remembered, repeated prompts push users toward Full Access, or trusted MCP tools like Playwright require dozens of approvals.
@@ -222,6 +223,7 @@ Trace analysis detects run-level failures:
 | Codex remote control | Mobile or remote sessions route through stale listeners, stale enrollment, or incomplete helper bundles |
 | Codex MCP discovery mismatch | MCP works in CLI or one config scope but disappears in VS Code, Desktop, WSL, project config, or an older session |
 | Codex Streamable HTTP MCP | HTTP/SSE MCP servers initialize but fail JSON-RPC parsing, `text/event-stream` framing, handshakes, auth gating, stale session ids, or reconnects |
+| Codex hooks runtime | Hooks duplicate, stop firing, warn about stale config, skip Code Mode/Desktop/Windows surfaces, or become hard to inspect in settings |
 | Codex terminal output integrity | Terminal scrollback, streamed output, or transcript rendering drops, overwrites, truncates, duplicates, or hides lines that raw logs still contain |
 | Codex subagent lifecycle | Completed, closed, stale, or interrupted subagents diverge across UI, registry, persisted spawn edges, quota, recent list, or parent discoverability |
 | Codex MCP runtime | MCP tools are configured but approval, namespace routing, unsupported callable names, or stdio transport fail at runtime |
@@ -271,6 +273,7 @@ trace-to-skill demo deeplink-launch
 trace-to-skill demo connector-auth-cache
 trace-to-skill demo mcp-discovery-mismatch
 trace-to-skill demo mcp-streamable-http
+trace-to-skill demo hooks-runtime
 trace-to-skill demo terminal-output-integrity
 trace-to-skill demo subagent-lifecycle
 trace-to-skill demo patch-overwrite
@@ -506,7 +509,7 @@ jobs:
       issues: write
     steps:
       - uses: actions/checkout@v5
-      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.80
+      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.81
         with:
           mode: all
           doctor-threshold: "85"
@@ -555,7 +558,7 @@ Composite action usage:
 ```yaml
 - id: trace-to-skill
-  uses: grnbtqdbyx-create/trace-to-skill@v0.1.80
+  uses: grnbtqdbyx-create/trace-to-skill@v0.1.81
   with:
     mode: all
     doctor-threshold: "85"
@@ -597,7 +600,7 @@ Action outputs:
 By default, generated reports are also appended to the GitHub Actions Job Summary. Set `job-summary: "false"` to disable that UI output.
-Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.80` executes that release's checked-out source instead of pulling the default branch at runtime.
+Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.81` executes that release's checked-out source instead of pulling the default branch at runtime.
 ## Codex Skill

package/dist/src/benchmark.js CHANGED Viewed

@@ -144,6 +144,12 @@ const BENCHMARK_CASES = [
         fixture: "fixtures/codex-mcp-streamable-http.md",
         expectedKinds: ["codex_mcp_streamable_http", "weak_evidence"]
     },
+    {
+        id: "codex-hooks-runtime",
+        title: "Codex hooks runtime and UI failure",
+        fixture: "fixtures/codex-hooks-runtime.md",
+        expectedKinds: ["codex_hooks_runtime", "weak_evidence"]
+    },
     {
         id: "codex-mcp-discovery-mismatch",
         title: "Codex MCP discovery and config-scope mismatch",

package/dist/src/benchmark.js.map CHANGED Viewed

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1	+ 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package/dist/src/demo.js CHANGED Viewed

@@ -63,6 +63,12 @@ const DEMO_SCENARIOS = [
         fixture: "fixtures/codex-mcp-streamable-http.md",
         description: "Streamable HTTP or SSE MCP servers pass initialize or tools/list but fail parsing, handshakes, auth gating, stale sessions, or reconnects."
     },
+    {
+        id: "hooks-runtime",
+        title: "Codex hooks runtime failure",
+        fixture: "fixtures/codex-hooks-runtime.md",
+        description: "Hooks duplicate, stop firing, warn about stale config, skip surfaces, or become hard to manage in Desktop settings."
+    },
     {
         id: "terminal-output-integrity",
         title: "Codex terminal output integrity",
@@ -162,6 +168,7 @@ export function renderDemoMarkdown(result) {
         "trace-to-skill demo connector-auth-cache",
         "trace-to-skill demo mcp-discovery-mismatch",
         "trace-to-skill demo mcp-streamable-http",
+        "trace-to-skill demo hooks-runtime",
         "trace-to-skill demo terminal-output-integrity",
         "trace-to-skill demo subagent-lifecycle",
         "trace-to-skill demo file-tree-ui",
@@ -192,6 +199,7 @@ export function renderDemoScenarioList(scenarios = listDemoScenarios()) {
         "trace-to-skill demo connector-auth-cache",
         "trace-to-skill demo mcp-discovery-mismatch",
         "trace-to-skill demo mcp-streamable-http",
+        "trace-to-skill demo hooks-runtime",
         "trace-to-skill demo terminal-output-integrity",
         "trace-to-skill demo subagent-lifecycle",
         "trace-to-skill demo --list",

package/dist/src/demo.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/src/rules.js CHANGED Viewed

@@ -487,6 +487,28 @@ const RULES = [
         suggestedRule: "When reporting Codex Streamable HTTP MCP failures, capture Codex version, MCP server name, transport URL without secrets, initialize/tools/list/tools/call results, HTTP status, Content-Type, SSE event framing, JSON-RPC message shape, session id before and after reconnect or server restart, auth/OAuth expectations, User-Agent and header requirements, exact parse/deserialize error, whether curl or another MCP client succeeds, and whether restarting Codex or reinitializing the transport recovers.",
         suggestedSkill: "codex-mcp-streamable-http-triage"
     },
+    {
+        kind: "codex_hooks_runtime",
+        severity: "high",
+        title: "Codex hooks runtime or UI failure",
+        why: "Hooks are a safety and automation boundary for Codex users; duplicate execution, missed lifecycle events, stale deprecation warnings, surface mismatches, or unusable settings UI can break guardrails and make agent behavior hard to trust.",
+        patterns: [
+            /\b(Duplicate Hooks|duplicate hook|hook twice|runs? twice|two identical event ids?|duplicate Hooks entries)\b/i,
+            /\b(PostToolUse|PreToolUse|SessionStart|SessionEnd|UserPromptSubmit|Notification|Stop|SubagentStop)\b.{0,220}\b(hook|hooks)\b.{0,220}\b(duplicate|twice|ignored|does not fire|doesn't fire|not firing|stops? firing|skips?|missing|not emitted|not run|no longer run)\b/i,
+            /\b(hook|hooks)\b.{0,220}\b(PostToolUse|PreToolUse|SessionStart|SessionEnd|UserPromptSubmit|Notification|Stop|SubagentStop)\b.{0,220}\b(duplicate|twice|ignored|does not fire|doesn't fire|not firing|stops? firing|skips?|missing|not emitted|not run|no longer run)\b/i,
+            /\bdeprecated\b.{0,80}`?codex_hooks`?\b.{0,160}\bwarning\b/i,
+            /\bdeprecated\b.{0,120}\bcodex_hooks\b.{0,220}\b(\[features\]\.hooks|features\.hooks|hooks enabled|using hooks)\b/i,
+            /\b\[features\]\.hooks\b.{0,220}\b(deprecated|codex_hooks warning|false deprecation|warning appears)\b/i,
+            /\bhooks\.json\b.{0,220}\b(live edit|edited|rate-limit|rate limit|auto-restore|restore|trust|trusted|reload|stops? firing|not firing|ignored)\b/i,
+            /\b(command_execution|Code Mode `?exec`?|Desktop routed tool calls?|Windows command_execution)\b.{0,220}\b(does not emit|doesn't emit|not emitted|skips?|missing|not firing)\b.{0,220}\b(PreToolUse|PostToolUse|hooks?)\b/i,
+            /\b(command_execution|Code Mode `?exec`?|Desktop routed tool calls?|Windows command_execution)\b.{0,220}\b(PreToolUse|PostToolUse|hooks?)\b.{0,220}\b(does not emit|doesn't emit|not emitted|skips?|missing|not firing)\b/i,
+            /\bHooks page\b.{0,220}\b(generic Hook \d+|Hook N|cannot scroll|can't scroll|not scroll|too long|handler names?|commands?|layout|rendering)\b/i,
+            /\b(handler-level quiet mode|quiet mode)\b.{0,160}\bhooks?\b/i,
+            /\bplugin-local hooks?\b.{0,220}\b(global hooks\.json|only executes global|not loaded|ignored|scope mismatch|linked worktree|wrong cwd)\b/i
+        ],
+        suggestedRule: "When reporting Codex hooks failures, capture Codex app/CLI/extension version, OS, surface, shell or Desktop route, `[features].hooks` and `hooks.json` snippets without secrets, hook event type, matcher, handler command/name, expected versus observed fire count, duplicate event ids, exact deprecation warning, trust state, whether hooks were edited live, rate-limit or auto-restore timing, Code Mode `exec` versus normal CLI comparison, linked-worktree cwd, Hooks settings UI screenshot if relevant, and whether restart/reload/new session restores behavior.",
+        suggestedSkill: "codex-hooks-runtime-triage"
+    },
     {
         kind: "codex_plugin_runtime",
         severity: "high",

package/dist/src/rules.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/src/types.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 export type Severity = "low" | "medium" | "high" | "critical";
-export type FindingKind = "premature_completion" | "tests_not_run" | "test_failure" | "ignored_instruction" | "hallucinated_file" | "over_editing" | "unsafe_command" | "secret_exposure" | "sensitive_file_access" | "hidden_unicode" | "prompt_injection" | "codex_remote_compact" | "context_compaction" | "codex_latest_turn_drift" | "codex_latency_regression" | "codex_thinking_hang" | "codex_clipboard_attachment" | "codex_deeplink_launch" | "codex_connector_auth_cache" | "codex_approval_friction" | "sandbox_permission" | "codex_windows_helper_path" | "codex_connectivity" | "codex_remote_control" | "codex_terminal_output_integrity" | "codex_subagent_lifecycle" | "codex_mcp_discovery_mismatch" | "codex_mcp_runtime" | "codex_mcp_streamable_http" | "codex_plugin_runtime" | "codex_file_tree_ui" | "codex_session_state" | "codex_token_burn" | "codex_resource_leak" | "codex_tool_call_integrity" | "codex_usage_reset_drift" | "quota_mismatch" | "mcp_risk" | "weak_evidence";
+export type FindingKind = "premature_completion" | "tests_not_run" | "test_failure" | "ignored_instruction" | "hallucinated_file" | "over_editing" | "unsafe_command" | "secret_exposure" | "sensitive_file_access" | "hidden_unicode" | "prompt_injection" | "codex_remote_compact" | "context_compaction" | "codex_latest_turn_drift" | "codex_latency_regression" | "codex_thinking_hang" | "codex_clipboard_attachment" | "codex_deeplink_launch" | "codex_connector_auth_cache" | "codex_approval_friction" | "sandbox_permission" | "codex_windows_helper_path" | "codex_connectivity" | "codex_remote_control" | "codex_terminal_output_integrity" | "codex_subagent_lifecycle" | "codex_mcp_discovery_mismatch" | "codex_mcp_runtime" | "codex_mcp_streamable_http" | "codex_hooks_runtime" | "codex_plugin_runtime" | "codex_file_tree_ui" | "codex_session_state" | "codex_token_burn" | "codex_resource_leak" | "codex_tool_call_integrity" | "codex_usage_reset_drift" | "quota_mismatch" | "mcp_risk" | "weak_evidence";
 export interface TraceInput {
     path: string;
     content: string;

package/docs/BENCHMARK.md CHANGED Viewed

@@ -29,6 +29,7 @@ This benchmark runs the public fixture pack that ships with the repository and p
 | Sensitive file access in agent context | `fixtures/sensitive-file-access.md` | 75 | 2 | 0 | `sensitive_file_access`, `weak_evidence` | pass |
 | Codex MCP runtime failure | `fixtures/codex-mcp-runtime.md` | 75 | 2 | 0 | `codex_mcp_runtime`, `weak_evidence` | pass |
 | Codex Streamable HTTP MCP parse and handshake failure | `fixtures/codex-mcp-streamable-http.md` | 75 | 2 | 0 | `codex_mcp_streamable_http`, `weak_evidence` | pass |
+| Codex hooks runtime and UI failure | `fixtures/codex-hooks-runtime.md` | 75 | 2 | 0 | `codex_hooks_runtime`, `weak_evidence` | pass |
 | Codex MCP discovery and config-scope mismatch | `fixtures/codex-mcp-discovery-mismatch.md` | 75 | 2 | 0 | `codex_mcp_discovery_mismatch`, `weak_evidence` | pass |
 | Codex plugin runtime and bundled capability failure | `fixtures/codex-plugin-runtime.md` | 59 | 3 | 0 | `codex_plugin_runtime`, `codex_windows_helper_path`, `weak_evidence` | pass |
 | Codex file tree and workspace navigation UI failure | `fixtures/codex-file-tree-ui.md` | 75 | 2 | 0 | `codex_file_tree_ui`, `weak_evidence` | pass |

package/docs/CODEX_ISSUE_MAP.md CHANGED Viewed

@@ -38,6 +38,7 @@ npx trace-to-skill lsp-audit . --format json
 | App connector auth cache and stale link regressions | `401 Reauthentication required`, `refresh token was revoked`, stale `link_*`, `isAccessible: false`, `codex_apps_tools` or `codex_app_directory` cache regeneration keeps broken connector state | `codex_connector_auth_cache` | `trace-to-skill codex-report ./runs` or `trace-to-skill demo connector-auth-cache` |
 | MCP discovery and config-scope mismatches | CLI `/mcp` works but VS Code/Desktop has no `mcp__*` tools, project `.codex/config.toml` ignored, `codex mcp get` says `No MCP server named`, WSL opens Windows `config.toml`, `CODEX_HOME` differs | `codex_mcp_discovery_mismatch` | `trace-to-skill codex-report ./runs` or `trace-to-skill demo mcp-discovery-mismatch` |
 | Streamable HTTP MCP parse, handshake, auth, and reconnect failures | Penpot `JsonRpcMessage deserialize`, `Content-Type: text/event-stream` parse failures, n8n initialize then `Transport closed`, DingTalk OAuth/login gating, stale `streamable-http` session ids after server restart, missing header/User-Agent requirements | `codex_mcp_streamable_http` | `trace-to-skill codex-report ./runs` or `trace-to-skill demo mcp-streamable-http` |
+| Hooks runtime and settings failures | Duplicate Hooks entries, `PostToolUse` twice for one tool call, false `codex_hooks` deprecation warnings with `[features].hooks`, hooks stop after rate limits/live edits/auto-restore, Windows `command_execution` skips `PreToolUse`, Hooks page cannot scroll or only shows generic Hook N rows | `codex_hooks_runtime` | `trace-to-skill codex-report ./runs` or `trace-to-skill demo hooks-runtime` |
 | Terminal output and scrollback integrity failures | scrollback lines disappear, streaming output overwrites older visible transcript, complete numbered lines are missing, `missing_count`, `tmux_scrollback_repro.sh`, viewport snaps to bottom, transcript mode cannot recover output | `codex_terminal_output_integrity` | `trace-to-skill codex-report ./runs` or `trace-to-skill demo terminal-output-integrity` |
 | Subagent lifecycle and state reconciliation failures | completed/closed subagents remain visible, stale `thread_spawn_edges`, `agent thread limit reached`, `close_agent` hangs or returns `not_found`, child threads crowd recent conversations, compaction loses prior subagent IDs, forked review inherits parent context | `codex_subagent_lifecycle` plus session subagent signals | `trace-to-skill session-audit ~/.codex --format json` for local history signals, then `trace-to-skill codex-report ./runs` for redacted traces |
 | Approval persistence and MCP approval friction | `Approve for this session` is not remembered, command approval cache misses, repeated file-change approvals, `approval_policy = "never"` still prompts for MCP tools, per-tool approval configs explode | `codex_approval_friction` | `trace-to-skill codex-report ./runs` |
@@ -81,6 +82,7 @@ npx trace-to-skill lsp-audit . --format json
 - Include connector/plugin name and id, installed plugin root, exact Codex Apps tool name, 401/reauth text, `link_*` id before and after reconnect/cache regeneration, `isAccessible` state, redacted `codex_apps_tools`/`codex_app_directory` metadata, ChatGPT app page state, and external MCP workaround result for connector auth-cache regressions.
 - Include effective `CODEX_HOME`, config files considered, redacted MCP sections, trust/profile/default-permissions state, `codex mcp list/get`, CLI-versus-Desktop/VS Code comparison, loaded config path/log lines, WSL/remote/SSH state, and restart/reload/new-conversation results for MCP discovery mismatches.
 - Include Codex version, MCP server name, transport URL without secrets, initialize/tools/list/tools/call results, HTTP status, `Content-Type`, SSE event framing, JSON-RPC message shape, session id before/after restart, auth/OAuth expectations, User-Agent/header requirements, parse/deserialize error, another-client comparison, and reconnect/reinitialize behavior for Streamable HTTP MCP reports.
+- Include app/CLI/extension version, OS, surface, shell/Desktop route, `[features].hooks`, redacted `hooks.json`, hook event type, matcher, handler command/name, expected versus observed fire count, duplicate event ids, deprecation warning text, trust state, live edit/rate-limit/auto-restore timing, Code Mode `exec` versus normal CLI comparison, linked-worktree cwd, Hooks settings UI evidence, and restart/reload/new-session behavior for hooks reports.
 - Include terminal emulator/version, shell, WSL/SSH/tmux/Zellij state, streaming state, exact scroll action, viewport snap behavior, first missing or duplicated line id, raw log/transcript proof, terminal capture, numbered-line harness/control output, terminal dimensions/scrollback settings, and `/resume` or transcript recovery behavior for terminal-output integrity reports.
 - Include root thread id, subagent ids/nicknames/roles, spawn/close/list commands, `close_agent` results, `list_agents` or `/agents` output, `thread_spawn_edges` status counts, `agents.max_threads` or registry quota evidence, recent-list/sidebar behavior, child-thread archive/top-level status, last-progress or halt reason, MCP server state for subagents, compaction/resume timing, redacted UI evidence, restart/reload behavior, and whether stale agents are UI-only or still block spawns for subagent-lifecycle reports. Attach `session-audit` when local rollout JSONL can summarize those signals without posting transcripts.
 - Include selected approval scope, displayed vs executed command, MCP server/tool names, visible args, repeated prompt count, and config snippets for approval-friction reports.
@@ -109,6 +111,7 @@ npx trace-to-skill lsp-audit . --format json
 - App connector auth cache and stale link regressions: https://github.com/openai/codex/issues/24675, https://github.com/openai/codex/issues/25443
 - MCP discovery and config-scope mismatches: https://github.com/openai/codex/issues/6465, https://github.com/openai/codex/issues/13025, https://github.com/openai/codex/issues/13549
 - Streamable HTTP MCP parse, handshake, auth, and reconnect failures: https://github.com/openai/codex/issues/25451, https://github.com/openai/codex/issues/24439, https://github.com/openai/codex/issues/21532, https://github.com/openai/codex/issues/21903, https://github.com/openai/codex/issues/13920, https://github.com/openai/codex/issues/12869, https://github.com/openai/codex/issues/22571, https://github.com/openai/codex/issues/16485
+- Hooks runtime and settings failures: https://github.com/openai/codex/issues/25437, https://github.com/openai/codex/issues/24781, https://github.com/openai/codex/issues/22148, https://github.com/openai/codex/issues/21160, https://github.com/openai/codex/issues/21639, https://github.com/openai/codex/issues/24453, https://github.com/openai/codex/issues/24211, https://github.com/openai/codex/issues/23996, https://github.com/openai/codex/issues/23906, https://github.com/openai/codex/issues/25293
 - Terminal output and scrollback integrity failures: https://github.com/openai/codex/issues/15380, https://github.com/openai/codex/issues/24849, https://github.com/openai/codex/issues/10726
 - Subagent lifecycle and state reconciliation failures: https://github.com/openai/codex/issues/23930, https://github.com/openai/codex/issues/23700, https://github.com/openai/codex/issues/25341, https://github.com/openai/codex/issues/25179, https://github.com/openai/codex/issues/22779, https://github.com/openai/codex/issues/24281, https://github.com/openai/codex/issues/25426, https://github.com/openai/codex/issues/22099
 - Approval persistence and MCP approval friction: https://github.com/openai/codex/issues/4212, https://github.com/openai/codex/issues/13476, https://github.com/openai/codex/issues/2998

package/docs/DEMO.md CHANGED Viewed

@@ -91,6 +91,7 @@ Suggested rule:
 - `connector-auth-cache`: App connectors keep stale `link_*` auth or discovery metadata after reauth-required responses.
 - `mcp-discovery-mismatch`: MCP servers work in CLI or one config scope but are absent in Desktop, VS Code, WSL, or project-local sessions.
 - `mcp-streamable-http`: Streamable HTTP or SSE MCP servers pass initialize or tools/list but fail parsing, handshakes, auth gating, stale sessions, or reconnects.
+- `hooks-runtime`: Hooks duplicate, stop firing, warn about stale config, skip surfaces, or become hard to manage in Desktop settings.
 - `terminal-output-integrity`: Terminal scrollback, streamed output, or transcript rendering drops, overwrites, truncates, or makes lines inaccessible.
 - `token-burn`: Usage drains from background polling, idle activity, compaction loops, retries, or cached-heavy turns.
 - `patch-overwrite`: `apply_patch` accepts `*** Add File` for an existing path, turning a create operation into a silent overwrite.
@@ -110,6 +111,7 @@ trace-to-skill demo deeplink-launch
 trace-to-skill demo connector-auth-cache
 trace-to-skill demo mcp-discovery-mismatch
 trace-to-skill demo mcp-streamable-http
+trace-to-skill demo hooks-runtime
 trace-to-skill demo terminal-output-integrity
 trace-to-skill demo subagent-lifecycle
 trace-to-skill demo file-tree-ui

package/docs/DISCOVERY.md CHANGED Viewed

@@ -77,6 +77,7 @@ npx trace-to-skill demo deeplink-launch
 npx trace-to-skill demo connector-auth-cache
 npx trace-to-skill demo mcp-discovery-mismatch
 npx trace-to-skill demo mcp-streamable-http
+npx trace-to-skill demo hooks-runtime
 npx trace-to-skill demo terminal-output-integrity
 npx trace-to-skill demo subagent-lifecycle
 npx trace-to-skill scorecard .
@@ -144,7 +145,7 @@ npx trace-to-skill suggest ./runs --target agents-md
 ## Related Keywords
-Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex LSP, Codex language server, lsp-audit, language-server readiness, typescript-language-server, pyright-langserver, gopls, rust-analyzer, sourcekit-lsp, clangd, Codex diagnostics bundle, privacy-preserving support bundle, workspace checkpoint, pre-agent checkpoint, Codex undo, Codex rewind, untracked file restore, sensitive path audit, sensitive-audit, agentignore, .agentignore, agentignore generator, codexignore, .codexignore, codexignore generator, aiexclude, .aiexclude, .gitignore candidates, exclude sensitive files, Codex plugin audit, Computer Use unavailable, Codex Browser plugin unavailable, bundled marketplace mismatch, generated runtime marketplace, plugin manifest missing, CODEX_HOME mismatch, Codex CLI, Codex sandbox, Windows sandbox, Codex config audit, Codex config.toml, Codex global state, .codex-global-state.json, Codex Speed reset, Codex Fast resets to Standard, service_tier fast, default-service-tier priority, has-user-changed-service-tier, Codex Preferences unable to save, configVersionConflict, default_permissions missing profile, Codex Windows helper path, Codex WindowsApps, Codex rg Access Denied, Codex ripgrep, CodexSandboxUsers, LocalCache Local OpenAI Codex bin, node_repl spawn setup refresh, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex connector auth cache, Codex Apps stale link, codex_apps_tools, codex_app_directory, Reauthentication required, refresh token revoked, isAccessible false, link_ connector, Codex deeplink, Codex OAuth callback, codex://oauth_callback, Unable to find Electron app, Error launching app, type=click&tag, AppUserModelID, DelegateExecute, codex app path, Codex remote compact, responses/compact, /compact timeout, tcp_user_timeout, stream_idle_timeout_ms, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex terminal output, Codex scrollback, Codex terminal history, terminal output integrity, missing_count, missing_examples, tmux_scrollback_repro.sh, line_truncation_repro.md, Windows Terminal scrollback, transcript mode, Codex subagent lifecycle, Codex subagent audit, stale subagents, close_agent, wait_agent, spawn_agent, thread_spawn_edges, agent thread limit reached, agents.max_threads, list_agents, /agents, subagent child threads, fork_context, unbiased review, subagent recent conversations, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex Streamable HTTP MCP, streamable-http MCP, HTTP/SSE MCP, MCP SSE, Content-Type text/event-stream, JsonRpcMessage deserialize, MCP handshake initialize, stale MCP session id, MCP reconnect, Penpot MCP, n8n MCP, DingTalk MCP, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex project history disappeared, Codex project threads hidden, Codex session index repair, unindexed rollout thread, codex resume thread id, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, Codex thinking hang, Codex stuck thinking, Codex Working stuck, no streamed follow-up, first response_item delayed, responses_http time.idle, model_client.stream_responses_api, turn/start, task_started, Codex Copy as Markdown missing, Codex Pasted text.txt, Codex long pasted prompt attachment, Codex clipboard export, Codex paste as text, Codex generated attachment preview edit, Codex goal ignores attachment, pasted-text-attachments.json, fileAttachments promptRaw composer.getText, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session audit, Codex history audit, Codex history map, Codex session index, session_index.jsonl, Codex session state, rollout JSONL, logs_2.sqlite, codex-tui.log, sandbox.log, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage evidence, Codex rate-limit evidence, Codex usage drain, prompt cache collapse, prompt_cache_key, cached_input_tokens, cached_tokens, low cache hit rate, websocket reconnect cache drop, Codex usage reset, Codex weekly reset drift, reset_at changed, deterministic reset, rate limit reset, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex process audit, PowerShell polling, powershell.exe Get-CimInstance Win32_Process, Win32_PerfFormattedData_PerfProc_Process, chat_processes.json stale entries, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, apply_patch Add File overwrite, patch guard, guard-patch, Add File symlink, tool_call_id, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
+Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex LSP, Codex language server, lsp-audit, language-server readiness, typescript-language-server, pyright-langserver, gopls, rust-analyzer, sourcekit-lsp, clangd, Codex diagnostics bundle, privacy-preserving support bundle, workspace checkpoint, pre-agent checkpoint, Codex undo, Codex rewind, untracked file restore, sensitive path audit, sensitive-audit, agentignore, .agentignore, agentignore generator, codexignore, .codexignore, codexignore generator, aiexclude, .aiexclude, .gitignore candidates, exclude sensitive files, Codex plugin audit, Computer Use unavailable, Codex Browser plugin unavailable, bundled marketplace mismatch, generated runtime marketplace, plugin manifest missing, CODEX_HOME mismatch, Codex CLI, Codex sandbox, Windows sandbox, Codex config audit, Codex config.toml, Codex global state, .codex-global-state.json, Codex Speed reset, Codex Fast resets to Standard, service_tier fast, default-service-tier priority, has-user-changed-service-tier, Codex Preferences unable to save, configVersionConflict, default_permissions missing profile, Codex Windows helper path, Codex WindowsApps, Codex rg Access Denied, Codex ripgrep, CodexSandboxUsers, LocalCache Local OpenAI Codex bin, node_repl spawn setup refresh, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex connector auth cache, Codex Apps stale link, codex_apps_tools, codex_app_directory, Reauthentication required, refresh token revoked, isAccessible false, link_ connector, Codex deeplink, Codex OAuth callback, codex://oauth_callback, Unable to find Electron app, Error launching app, type=click&tag, AppUserModelID, DelegateExecute, codex app path, Codex remote compact, responses/compact, /compact timeout, tcp_user_timeout, stream_idle_timeout_ms, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex terminal output, Codex scrollback, Codex terminal history, terminal output integrity, missing_count, missing_examples, tmux_scrollback_repro.sh, line_truncation_repro.md, Windows Terminal scrollback, transcript mode, Codex subagent lifecycle, Codex subagent audit, stale subagents, close_agent, wait_agent, spawn_agent, thread_spawn_edges, agent thread limit reached, agents.max_threads, list_agents, /agents, subagent child threads, fork_context, unbiased review, subagent recent conversations, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex Streamable HTTP MCP, streamable-http MCP, HTTP/SSE MCP, MCP SSE, Content-Type text/event-stream, JsonRpcMessage deserialize, MCP handshake initialize, stale MCP session id, MCP reconnect, Penpot MCP, n8n MCP, DingTalk MCP, Codex hooks runtime, hooks.json, codex_hooks, features.hooks, PreToolUse, PostToolUse, SessionStart hook, duplicate hooks, Hook N, Hooks settings, command_execution hooks, Code Mode exec hooks, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex project history disappeared, Codex project threads hidden, Codex session index repair, unindexed rollout thread, codex resume thread id, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, Codex thinking hang, Codex stuck thinking, Codex Working stuck, no streamed follow-up, first response_item delayed, responses_http time.idle, model_client.stream_responses_api, turn/start, task_started, Codex Copy as Markdown missing, Codex Pasted text.txt, Codex long pasted prompt attachment, Codex clipboard export, Codex paste as text, Codex generated attachment preview edit, Codex goal ignores attachment, pasted-text-attachments.json, fileAttachments promptRaw composer.getText, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session audit, Codex history audit, Codex history map, Codex session index, session_index.jsonl, Codex session state, rollout JSONL, logs_2.sqlite, codex-tui.log, sandbox.log, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage evidence, Codex rate-limit evidence, Codex usage drain, prompt cache collapse, prompt_cache_key, cached_input_tokens, cached_tokens, low cache hit rate, websocket reconnect cache drop, Codex usage reset, Codex weekly reset drift, reset_at changed, deterministic reset, rate limit reset, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex process audit, PowerShell polling, powershell.exe Get-CimInstance Win32_Process, Win32_PerfFormattedData_PerfProc_Process, chat_processes.json stale entries, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, apply_patch Add File overwrite, patch guard, guard-patch, Add File symlink, tool_call_id, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
 ## Non-Goals

package/docs/FAILURE_TAXONOMY.md CHANGED Viewed

@@ -128,6 +128,14 @@ Common signals include Penpot response parse or `JsonRpcMessage deserialize` err
 The fix is to capture Codex version, MCP server name, transport URL without secrets, initialize/tools/list/tools/call results, HTTP status, `Content-Type`, SSE event framing, JSON-RPC message shape, session id before and after reconnect or server restart, auth/OAuth expectations, User-Agent and header requirements, exact parse/deserialize error, whether curl or another MCP client succeeds, and whether restarting Codex or reinitializing the transport recovers.
+## Codex Hooks Runtime
+Codex hooks can be configured but unreliable across surfaces. Because hooks often carry safety checks, logging, automation, and local workflow glue, duplicate runs or missed lifecycle events can quietly invalidate user expectations.
+Common signals include duplicate Hooks entries for one tool call, `PostToolUse` running twice, false `codex_hooks` deprecation warnings while `[features].hooks` is enabled, hooks stopping after rate limits, live `hooks.json` edits or session auto-restore, `SessionStart` not firing on restored sessions, Windows `command_execution` or Code Mode `exec` skipping `PreToolUse`, plugin-local hooks only executing from global `hooks.json`, linked worktrees using the wrong cwd, and Hooks settings pages that show generic Hook N rows or cannot scroll.
+The fix is to capture Codex app/CLI/extension version, OS, surface, shell or Desktop route, `[features].hooks` and redacted `hooks.json`, hook event type, matcher, handler command/name, expected versus observed fire count, duplicate event ids, exact deprecation warning, trust state, live-edit/rate-limit/auto-restore timing, Code Mode `exec` versus normal CLI comparison, linked-worktree cwd, Hooks settings UI screenshot if relevant, and whether restart/reload/new session restores behavior.
 ## Codex MCP Discovery Mismatch
 Codex MCP servers can work in CLI or one config scope but disappear in another surface before any tool call is possible. This is different from runtime failure: the user may have no `mcp__*` tools exposed in VS Code, Desktop, WSL, a remote session, project-local `.codex/config.toml`, or an older conversation even though CLI `/mcp` works.

package/docs/OPENAI_OSS_BRIEF.md CHANGED Viewed

@@ -3,18 +3,18 @@
 | Field | Value |
 | --- | --- |
 | Repository | https://github.com/grnbtqdbyx-create/trace-to-skill |
-| Package | trace-to-skill@0.1.80 |
+| Package | trace-to-skill@0.1.81 |
 | License | Apache-2.0 |
 | Codex readiness | ready (100/100) |
-| Benchmark | pass, 34 cases |
+| Benchmark | pass, 35 cases |
 ## Why This Repository Qualifies
-trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 34 public fixture cases.
+trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 35 public fixture cases.
 ### 500-Character Version
-> trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 34 public fixture cases.
+> trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 35 public fixture cases.
 ## How API Credits Would Be Used
@@ -27,10 +27,10 @@ API credits would power optional maintainer workflows on top of the local determ
 ## Evidence
 - Public repository: https://github.com/grnbtqdbyx-create/trace-to-skill
-- One-command package: npx trace-to-skill@0.1.80
+- One-command package: npx trace-to-skill@0.1.81
 - Open-source license: Apache-2.0
 - Codex readiness doctor: ready, 100/100, 0 failed checks.
-- Public fixture benchmark: pass, 34 cases.
+- Public fixture benchmark: pass, 35 cases.
 - Maintainer control: generated rules are suggestions, evidence is line-linked, and secrets can be redacted before sharing.
 ## Next Steps Before Submitting

package/docs/SCORECARD.md CHANGED Viewed

@@ -9,7 +9,7 @@ Status: **pass**
 | Failed doctor checks | 0 |
 | Critical findings | 0 |
 | Built-in benchmark | pass |
-| Benchmark cases | 34 |
+| Benchmark cases | 35 |
 ## Doctor Summary
@@ -46,6 +46,7 @@ This benchmark runs the public fixture pack that ships with the repository and p
 | Sensitive file access in agent context | `fixtures/sensitive-file-access.md` | 75 | 2 | 0 | `sensitive_file_access`, `weak_evidence` | pass |
 | Codex MCP runtime failure | `fixtures/codex-mcp-runtime.md` | 75 | 2 | 0 | `codex_mcp_runtime`, `weak_evidence` | pass |
 | Codex Streamable HTTP MCP parse and handshake failure | `fixtures/codex-mcp-streamable-http.md` | 75 | 2 | 0 | `codex_mcp_streamable_http`, `weak_evidence` | pass |
+| Codex hooks runtime and UI failure | `fixtures/codex-hooks-runtime.md` | 75 | 2 | 0 | `codex_hooks_runtime`, `weak_evidence` | pass |
 | Codex MCP discovery and config-scope mismatch | `fixtures/codex-mcp-discovery-mismatch.md` | 75 | 2 | 0 | `codex_mcp_discovery_mismatch`, `weak_evidence` | pass |
 | Codex plugin runtime and bundled capability failure | `fixtures/codex-plugin-runtime.md` | 59 | 3 | 0 | `codex_plugin_runtime`, `codex_windows_helper_path`, `weak_evidence` | pass |
 | Codex file tree and workspace navigation UI failure | `fixtures/codex-file-tree-ui.md` | 75 | 2 | 0 | `codex_file_tree_ui`, `weak_evidence` | pass |

package/docs/USE_CASES.md CHANGED Viewed

@@ -19,6 +19,7 @@ npx trace-to-skill demo deeplink-launch
 npx trace-to-skill demo connector-auth-cache
 npx trace-to-skill demo mcp-discovery-mismatch
 npx trace-to-skill demo mcp-streamable-http
+npx trace-to-skill demo hooks-runtime
 npx trace-to-skill demo terminal-output-integrity
 npx trace-to-skill demo subagent-lifecycle
 npx trace-to-skill sensitive-audit .
@@ -30,7 +31,7 @@ What it proves:
 - packaged fixtures can produce a real Codex issue report immediately
 - maintainers can inspect the output shape before sharing any private log
-- demos cover remote compact failures, Windows helper path failures, patch overwrite safety, approval friction, latency, Thinking hangs, clipboard/attachment regressions, deeplink/OAuth launch regressions, connector auth-cache regressions, MCP discovery/config-scope mismatches, Streamable HTTP MCP parse/handshake failures, terminal output/scrollback integrity, subagent lifecycle drift, token burn, sensitive files, and prompt injection
+- demos cover remote compact failures, Windows helper path failures, patch overwrite safety, approval friction, latency, Thinking hangs, clipboard/attachment regressions, deeplink/OAuth launch regressions, connector auth-cache regressions, MCP discovery/config-scope mismatches, Streamable HTTP MCP parse/handshake failures, hooks runtime failures, terminal output/scrollback integrity, subagent lifecycle drift, token burn, sensitive files, and prompt injection
 - `sensitive-audit` scans filenames and paths before an agent run, without reading file contents, so teams can build `.agentignore`, `.aiexclude`, `.codexignore`, `.gitignore`, or sandbox permission profiles from a concrete repo report
 - `lsp-audit` scans repo language signals and PATH availability so teams know which language servers are ready before asking Codex for symbol-aware edits
@@ -55,7 +56,7 @@ What it proves:
 Recommended CI surface:
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.80
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.81
   with:
     mode: all
     doctor-threshold: "85"
@@ -391,7 +392,21 @@ This catches signals such as Penpot `JsonRpcMessage deserialize` or response-par
 Include Codex version, MCP server name, transport URL without secrets, initialize/tools/list/tools/call results, HTTP status, `Content-Type`, SSE event framing, JSON-RPC message shape, session id before and after reconnect or server restart, auth/OAuth expectations, User-Agent/header requirements, exact parse/deserialize error, whether curl or another MCP client succeeds, and whether restarting Codex or reinitializing the transport recovers.
-## 26. Patch Overwrite Guard
+## 26. Codex Hooks Runtime Evidence
+Use this when Codex hooks duplicate, stop firing, emit stale deprecation warnings, behave differently across CLI/Desktop/Code Mode/Windows, or become hard to inspect in settings.
+```bash
+npx trace-to-skill demo hooks-runtime
+npx trace-to-skill analyze ./runs --format json
+npx trace-to-skill codex-report ./runs --output openai-codex-hooks-runtime.md
+```
+This catches signals such as duplicate Hooks entries for one tool call, `PostToolUse` running twice, false `codex_hooks` deprecation warnings while `[features].hooks` is enabled, `SessionStart` or `PostToolUse` stopping after rate limits, live `hooks.json` edits or auto-restore, Windows `command_execution` skipping `PreToolUse`, Code Mode `exec` surface gaps, plugin/global hook scope mismatches, and Hooks settings pages that show generic Hook N rows or cannot scroll.
+Include Codex app/CLI/extension version, OS, surface, shell or Desktop route, `[features].hooks` and `hooks.json` snippets without secrets, hook event type, matcher, handler command/name, expected versus observed fire count, duplicate event ids, exact deprecation warning, trust state, live-edit/rate-limit/auto-restore timing, Code Mode `exec` versus normal CLI comparison, linked-worktree cwd, Hooks settings UI screenshot if relevant, and whether restart/reload/new session restores behavior.
+## 27. Patch Overwrite Guard
 Use this before applying a generated patch when you want create/update/delete semantics checked against the actual workspace.
@@ -408,7 +423,7 @@ For a public demo report:
 npx trace-to-skill demo patch-overwrite
 ```
-## 27. Sensitive Path Preflight Before Agent Runs
+## 28. Sensitive Path Preflight Before Agent Runs
 Use this before giving an AI coding agent a repository.
@@ -423,7 +438,7 @@ This finds sensitive-looking paths such as `.env`, `.env.*`, `.npmrc`, `.pypirc`
 The output includes a stable JSON schema plus recommended exclude globs that can seed `.agentignore`, `.aiexclude`, `.codexignore`, `.gitignore`, local sandbox permission profiles, or team security review checklists. `--format ignore` renders a reviewable generated file candidate and still does not mutate the repo. It is a preflight report, not a sandbox boundary.
-## 28. Workspace Checkpoint Before Agent Runs
+## 29. Workspace Checkpoint Before Agent Runs
 Use this before giving Codex, Claude, Cursor, or another coding agent a dirty repository where untracked local work matters.
@@ -436,7 +451,7 @@ This writes a local checkpoint bundle with `status.txt`, staged and unstaged bin
 This is useful for OpenAI/Codex `/undo` and `/rewind` discussions where users need workspace protection beyond conversation rewind, especially when untracked files are outside normal commit history.
-## 29. OpenAI Codex Issue Report
+## 30. OpenAI Codex Issue Report
 Use this when you want to file or update an OpenAI/Codex issue with a concise, evidence-backed report instead of pasting a full transcript.
@@ -449,7 +464,7 @@ The report includes the likely Codex failure class, line-linked evidence, diagno
 For a cluster-to-command map of current Codex issue patterns, see [CODEX_ISSUE_MAP.md](CODEX_ISSUE_MAP.md).
-## 30. Sensitive File Access Evidence
+## 31. Sensitive File Access Evidence
 Use this when a trace suggests an agent read, attached, uploaded, diffed, or indexed credential-bearing files.
@@ -462,7 +477,7 @@ This catches signals such as `.env`, `.env.production`, `.npmrc`, `.pypirc`, `.n
 Before publishing evidence, run `trace-to-skill redact` and attach only redacted excerpts plus the file path/class.
-## 31. GitHub Context Guard
+## 32. GitHub Context Guard
 Use this before an agent reads untrusted GitHub text.
@@ -479,7 +494,7 @@ Use it when:
 - a bot asks Codex to triage untrusted user reports
 - logs or comments might contain instructions like "ignore previous instructions" or "print secrets"
-## 32. Failed Agent Run To Reviewable Rule
+## 33. Failed Agent Run To Reviewable Rule
 Use this when a coding agent made a repeated workflow mistake.
@@ -497,7 +512,7 @@ Recommended maintainer loop:
 4. Copy only evidence-backed rules into the real policy file.
 5. Run `eval` or `scorecard` in CI so the same failure does not silently return.
-## 33. Privacy-Preserving Adoption
+## 34. Privacy-Preserving Adoption
 Use this when you want public evidence without leaking private traces.

package/fixtures/codex-hooks-runtime.md ADDED Viewed

@@ -0,0 +1,25 @@
+# Codex Hooks Runtime Fixture
+## Duplicate hook execution
+Codex CLI 0.136.0 with `[features].hooks = true` runs the same PostToolUse hook twice for a single tool call.
+The trace shows duplicate Hooks entries for one `exec` command and the hook log contains two identical event ids.
+## Deprecated config warning drift
+Startup prints a deprecated `codex_hooks` warning even though the config only uses `[features].hooks`.
+The warning appears before the TUI is ready and makes users think their hooks setup is legacy or unsafe.
+## Hook lifecycle stops firing
+After a rate-limit stop, live edit to hooks.json, or session auto-restore, SessionStart and PostToolUse hooks stop firing.
+Restarting Codex restores hook execution temporarily.
+## Surface mismatch
+Windows command_execution does not emit PreToolUse hooks even with matcher `*`.
+The same hook fires in a normal CLI shell, but Code Mode `exec` and Desktop routed tool calls skip it.
+## Hooks settings UI
+The Codex Desktop Hooks page lists many generic Hook N entries, cannot scroll through long hook lists, and does not show handler names or commands clearly.

package/llms.txt CHANGED Viewed

@@ -24,6 +24,7 @@ Runtime: Node.js 20+
 - Codex mobile and remote-control route health failures such as `Waiting for desktop`, `Directory Unavailable`, stale listeners on `127.0.0.1:14567`, stale `server_name` enrollment, empty backend environments, and incomplete helper bundles
 - Codex MCP runtime failures such as cancelled non-interactive approvals, `request_user_input is not supported in exec mode`, dropped namespace or `serverName` metadata, `unsupported call: mcp__...__...`, and closed `StdioServerTransport` sessions
 - Codex Streamable HTTP MCP failures where Penpot, n8n, DingTalk, or another HTTP/SSE MCP server initializes but fails JSON-RPC parsing, `Content-Type: text/event-stream` handling, handshakes, OAuth gating, stale session ids, missing headers, or reconnects
+- Codex hooks runtime failures where hooks duplicate, stop firing, emit stale `codex_hooks` warnings, skip Code Mode/Windows/Desktop surfaces, or become hard to manage in Hooks settings
 - Codex MCP discovery and config-scope mismatches where CLI `/mcp` works but VS Code, Desktop, WSL, project `.codex/config.toml`, `CODEX_HOME`, or an older conversation exposes no `mcp__*` tools
 - Codex terminal output and scrollback integrity failures where streamed lines disappear, get overwritten, truncate, duplicate, misalign, snap to the bottom, or only survive in raw logs/transcripts
 - Codex subagent lifecycle failures where completed or closed agents remain visible, `thread_spawn_edges` drift, child threads crowd the recent list, `agent thread limit reached` blocks spawns, or compaction loses prior subagent IDs; `session-audit` can summarize local subagent signal counts without exposing transcripts
@@ -83,6 +84,7 @@ npx trace-to-skill demo deeplink-launch
 npx trace-to-skill demo connector-auth-cache
 npx trace-to-skill demo mcp-discovery-mismatch
 npx trace-to-skill demo mcp-streamable-http
+npx trace-to-skill demo hooks-runtime
 npx trace-to-skill demo terminal-output-integrity
 npx trace-to-skill demo subagent-lifecycle
 npx trace-to-skill lint-agents .
@@ -111,7 +113,7 @@ npx trace-to-skill init --comment --sarif
 ## GitHub Action
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.80
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.81
   with:
     mode: all
     doctor-threshold: "85"

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "trace-to-skill",
-  "version": "0.1.80",
+  "version": "0.1.81",
   "description": "Turn failed AI coding-agent runs into reusable AGENTS.md rules, SKILL.md files, and eval evidence.",
   "type": "module",
   "main": "dist/src/index.js",
@@ -123,6 +123,11 @@
     "streamable-http-mcp",
     "mcp-http",
     "mcp-sse",
+    "codex-hooks",
+    "codex-hooks-runtime",
+    "hooks-json",
+    "pretooluse",
+    "posttooluse",
     "codex-plugins",
     "codex-file-tree",
     "codex-navigation",

package/schemas/analysis-result.schema.json CHANGED Viewed

@@ -86,6 +86,7 @@
         "codex_mcp_discovery_mismatch",
         "codex_mcp_runtime",
         "codex_mcp_streamable_http",
+        "codex_hooks_runtime",
         "codex_plugin_runtime",
         "codex_file_tree_ui",
         "codex_session_state",