trace-to-skill 0.1.71 → 0.1.72

package/README.md

@@ -57,7 +57,7 @@ Use it when you need to:
 - **Harden agent instructions:** run `trace-to-skill lint-agents .` to catch missing `AGENTS.md`, conflicting tool instructions, missing includes, nested instruction drift, encoding issues, and risky MCP config.
 - **Protect agent context:** run `trace-to-skill guard-github-event "$GITHUB_EVENT_PATH"` before feeding issue, PR, comment, discussion, check-run, or commit text into an agent.
 - **Prevent unsafe patch overwrites:** run `trace-to-skill guard-patch ./change.patch --root .` before applying generated patches so `*** Add File` cannot silently replace an existing file or symlink target.
-- **Audit local Codex session history:** run `trace-to-skill session-audit ~/.codex --format json` to summarize rollout JSONL sizes, huge lines, parse errors, state files, and short `session_index.jsonl` evidence without publishing private transcripts.
+- **Audit local Codex session history:** run `trace-to-skill session-audit ~/.codex --format json` to summarize rollout JSONL sizes, huge lines, parse errors, state files, short `session_index.jsonl` evidence, and recoverable unindexed thread ids without publishing private transcripts.
 - **Preflight sensitive paths before agent runs:** run `trace-to-skill sensitive-audit . --format json` to find `.env`, private keys, package auth files, cloud credentials, local databases, signing files, and secret manifests by filename/path without reading file contents.
 - **Preflight language-server readiness:** run `trace-to-skill lsp-audit . --format json` to detect repo languages, missing LSP commands, install hints, and evidence files before asking Codex for symbol-aware edits.
 - **Audit Codex config drift:** run `trace-to-skill config-audit ~/.codex --format json` to summarize legacy profile config, model pins, Speed/Fast service-tier persistence drift, sandbox/approval posture, Windows elevated sandbox mode, missing permission profiles, plugin cache drift, and MCP approval sprawl.
@@ -115,10 +115,11 @@ Open-source maintainers do not need more AI-generated noise. They need agents th
 - Did Codex Desktop on Windows expose `rg`, `node_repl`, Browser, Chrome, or Computer Use helper paths that were discoverable but not executable?
 - Did an `apply_patch` create operation actually overwrite an existing file or symlink target?
 - Can a generated patch be guarded before it touches the workspace?
-- Which local Codex rollout JSONL or `session_index.jsonl` files make `codex resume` or Desktop history sluggish?
+- Which local Codex rollout JSONL or `session_index.jsonl` files make `codex resume`, project history, search, or Desktop history sluggish/incomplete?
 - Which `config.toml` or `.codex-global-state.json` setting explains a sandbox, approval, plugin, model, Speed/Fast, or Preferences save regression?
 - Which bundled plugin/cache/marketplace/helper-app mismatch explains a Browser, Chrome, Computer Use, or MCP runtime failure?
 - Can I attach one safe diagnostics folder to OpenAI without posting raw `config.toml`, SQLite state, local logs, or transcripts?
+- Can I prove a project thread still exists on disk and get the `codex resume <id>` command when Desktop search/sidebar hides it?
 - Can I create a local checkpoint before an agent run so untracked dirty files are not lost if I need a manual rewind?
 - Which files in this repo should be excluded from agent context before Codex, Claude, Cursor, or Gemini reads the workspace?
 - Which language servers should be installed before Codex attempts symbol-aware navigation, diagnostics, rename, or go-to-definition work?
@@ -495,7 +496,7 @@ jobs:
       issues: write
     steps:
       - uses: actions/checkout@v5
-      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.71
+      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.72
         with:
           mode: all
           doctor-threshold: "85"
@@ -544,7 +545,7 @@ Composite action usage:
 
 ```yaml
 - id: trace-to-skill
-  uses: grnbtqdbyx-create/trace-to-skill@v0.1.71
+  uses: grnbtqdbyx-create/trace-to-skill@v0.1.72
   with:
     mode: all
     doctor-threshold: "85"
@@ -586,7 +587,7 @@ Action outputs:
 
 By default, generated reports are also appended to the GitHub Actions Job Summary. Set `job-summary: "false"` to disable that UI output.
 
-Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.71` executes that release's checked-out source instead of pulling the default branch at runtime.
+Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.72` executes that release's checked-out source instead of pulling the default branch at runtime.
 
 ## Codex Skill
 

package/dist/src/sessionAudit.d.ts

@@ -12,6 +12,16 @@ export interface SessionAuditFile {
     jsonParseErrors: number;
     recordTypes: Record<string, number>;
     signalCounts: Record<string, number>;
+    session?: SessionAuditThreadMetadata;
+}
+export interface SessionAuditThreadMetadata {
+    id: string;
+    createdAt?: string;
+    cwdBasename?: string;
+    cwdHash?: string;
+    originator?: string;
+    cliVersion?: string;
+    sourceKind?: string;
 }
 export interface SessionAuditStateFile {
     path: string;
@@ -20,10 +30,24 @@ export interface SessionAuditStateFile {
 }
 export interface SessionAuditFinding {
     severity: SessionAuditSeverity;
-    kind: "large_rollout" | "huge_jsonl_line" | "json_parse_error" | "short_session_index" | "state_file_present";
+    kind: "large_rollout" | "huge_jsonl_line" | "json_parse_error" | "short_session_index" | "unindexed_rollout_thread" | "state_file_present";
     path?: string;
     message: string;
 }
+export interface SessionAuditThread {
+    id: string;
+    path: string;
+    indexed: boolean;
+    indexTitle?: string;
+    indexUpdatedAt?: string;
+    createdAt?: string;
+    cwdBasename?: string;
+    cwdHash?: string;
+    originator?: string;
+    cliVersion?: string;
+    sourceKind?: string;
+    recoverCommand: string;
+}
 export interface SessionAuditResult {
     generatedAt: string;
     root: string;
@@ -40,8 +64,13 @@ export interface SessionAuditResult {
         parseErrorFiles: number;
         sessionIndexLines?: number;
         rolloutFiles?: number;
+        rolloutThreads: number;
+        indexedThreads: number;
+        unindexedRolloutThreads: number;
+        projectRoots: number;
     };
     files: SessionAuditFile[];
+    threads: SessionAuditThread[];
     stateFiles: SessionAuditStateFile[];
     findings: SessionAuditFinding[];
 }

package/dist/src/sessionAudit.js

@@ -1,3 +1,4 @@
+import { createHash } from "node:crypto";
 import { createReadStream } from "node:fs";
 import { readdir, stat } from "node:fs/promises";
 import os from "node:os";
@@ -17,10 +18,13 @@ export async function auditCodexSessions(target = defaultCodexHome(), options =
     for (const file of discovered.jsonlFiles) {
         files.push(await analyzeJsonlFile(file, root));
     }
-    const stateFiles = await Promise.all(discovered.stateFiles.map((file) => stateFileInfo(file, root)));
-    const findings = buildFindings(files, stateFiles, thresholds);
     const sessionIndex = files.find((file) => path.basename(file.path) === "session_index.jsonl");
+    const indexEntries = sessionIndex ? await readSessionIndex(path.join(root, sessionIndex.path)) : new Map();
+    const threads = buildThreads(files, indexEntries);
+    const stateFiles = await Promise.all(discovered.stateFiles.map((file) => stateFileInfo(file, root)));
+    const findings = buildFindings(files, threads, stateFiles, thresholds);
     const rolloutFiles = files.filter((file) => path.basename(file.path).startsWith("rollout-")).length;
+    const projectKeys = new Set(threads.map((thread) => thread.cwdHash).filter(Boolean));
     const summary = {
         jsonlFiles: files.length,
         totalBytes: files.reduce((sum, file) => sum + file.sizeBytes, 0),
@@ -28,7 +32,11 @@ export async function auditCodexSessions(target = defaultCodexHome(), options =
         hugeLineFiles: files.filter((file) => file.largestLineBytes >= thresholds.hugeLineBytes).length,
         parseErrorFiles: files.filter((file) => file.jsonParseErrors > 0).length,
         sessionIndexLines: sessionIndex?.lineCount,
-        rolloutFiles
+        rolloutFiles,
+        rolloutThreads: threads.length,
+        indexedThreads: threads.filter((thread) => thread.indexed).length,
+        unindexedRolloutThreads: threads.filter((thread) => !thread.indexed).length,
+        projectRoots: projectKeys.size
     };
     return {
         generatedAt: new Date().toISOString(),
@@ -37,6 +45,7 @@ export async function auditCodexSessions(target = defaultCodexHome(), options =
         thresholds,
         summary,
         files: files.sort((a, b) => b.sizeBytes - a.sizeBytes),
+        threads,
         stateFiles,
         findings
     };
@@ -54,6 +63,9 @@ export function renderSessionAuditMarkdown(result) {
         `Large files: ${result.summary.largeFiles}`,
         `Huge-line files: ${result.summary.hugeLineFiles}`,
         `Parse-error files: ${result.summary.parseErrorFiles}`,
+        `Rollout threads: ${result.summary.rolloutThreads}`,
+        `Indexed threads: ${result.summary.indexedThreads}`,
+        `Unindexed rollout threads: ${result.summary.unindexedRolloutThreads}`,
         ""
     ];
     if (result.findings.length > 0) {
@@ -64,6 +76,27 @@ export function renderSessionAuditMarkdown(result) {
         }
         lines.push("");
     }
+    lines.push("## Recoverable Thread Index", "");
+    if (result.threads.length === 0) {
+        lines.push("No rollout session metadata found.", "");
+    }
+    else {
+        lines.push("| Indexed | Thread id | Project | Created | Index title | Resume |");
+        lines.push("| --- | --- | --- | --- | --- | --- |");
+        for (const thread of result.threads.slice(0, 25)) {
+            const project = [thread.cwdBasename, thread.cwdHash].filter(Boolean).join(" ");
+            lines.push([
+                String(thread.indexed),
+                `\`${thread.id}\``,
+                project || "",
+                thread.createdAt ?? "",
+                thread.indexTitle ?? "",
+                `\`${thread.recoverCommand}\``
+            ].map(escapeCell).join(" | ").replace(/^/, "| ").replace(/$/, " |"));
+        }
+        lines.push("");
+        lines.push("This table intentionally avoids printing full workspace paths. `cwdHash` is a short hash of the original path so related threads can be grouped without exposing local directories.", "");
+    }
     lines.push("## Largest JSONL Files", "");
     const largest = result.files.slice(0, 10);
     if (largest.length === 0) {
@@ -95,7 +128,7 @@ export function renderSessionAuditMarkdown(result) {
         }
         lines.push("");
     }
-    lines.push("Suggested next step:", "", "- If this report shows large rollout files or parse errors, attach this JSON/Markdown summary to the Codex issue instead of publishing private transcripts.", "- If `codex resume <id>` works but the picker freezes, include the largest file sizes and line counts from this report.", "");
+    lines.push("Suggested next step:", "", "- If this report shows large rollout files or parse errors, attach this JSON/Markdown summary to the Codex issue instead of publishing private transcripts.", "- If `codex resume <id>` works but the picker freezes, include the largest file sizes and line counts from this report.", "- If project history/search is empty but this report lists unindexed rollout threads, try `codex resume <thread_id>` locally and include the unindexed count plus affected hashed project group in the issue.", "");
     return lines.join("\n");
 }
 async function discoverCodexFiles(root) {
@@ -133,6 +166,7 @@ async function analyzeJsonlFile(filePath, root) {
     let lineCount = 0;
     let largestLineBytes = 0;
     let jsonParseErrors = 0;
+    let session;
     const input = createReadStream(filePath, { encoding: "utf8" });
     const reader = readline.createInterface({ input, crlfDelay: Infinity });
     for await (const line of reader) {
@@ -145,6 +179,7 @@ async function analyzeJsonlFile(filePath, root) {
         try {
             const parsed = JSON.parse(line);
             countParsedRecord(parsed, recordTypes, signalCounts);
+            session ??= extractSessionMetadata(parsed);
         }
         catch {
             jsonParseErrors += 1;
@@ -157,7 +192,8 @@ async function analyzeJsonlFile(filePath, root) {
         largestLineBytes,
         jsonParseErrors,
         recordTypes,
-        signalCounts
+        signalCounts,
+        session
     };
 }
 async function stateFileInfo(filePath, root) {
@@ -168,7 +204,7 @@ async function stateFileInfo(filePath, root) {
         present: true
     };
 }
-function buildFindings(files, stateFiles, thresholds) {
+function buildFindings(files, threads, stateFiles, thresholds) {
     const findings = [];
     const rolloutFiles = files.filter((file) => path.basename(file.path).startsWith("rollout-"));
     const sessionIndex = files.find((file) => path.basename(file.path) === "session_index.jsonl");
@@ -206,6 +242,16 @@ function buildFindings(files, stateFiles, thresholds) {
             message: `session_index.jsonl has ${sessionIndex.lineCount} lines for ${rolloutFiles.length} rollout file(s); this can indicate an incomplete sidebar index.`
         });
     }
+    if (sessionIndex) {
+        for (const thread of threads.filter((item) => !item.indexed).slice(0, 10)) {
+            findings.push({
+                severity: "warning",
+                kind: "unindexed_rollout_thread",
+                path: thread.path,
+                message: `Rollout thread ${thread.id} has session metadata but no matching session_index.jsonl row; project/search UI may hide it while direct resume can still work.`
+            });
+        }
+    }
     for (const stateFile of stateFiles.filter((file) => file.path.endsWith(".sqlite"))) {
         findings.push({
             severity: "warning",
@@ -216,6 +262,79 @@ function buildFindings(files, stateFiles, thresholds) {
     }
     return findings;
 }
+async function readSessionIndex(filePath) {
+    const entries = new Map();
+    const input = createReadStream(filePath, { encoding: "utf8" });
+    const reader = readline.createInterface({ input, crlfDelay: Infinity });
+    for await (const line of reader) {
+        if (!line.trim()) {
+            continue;
+        }
+        try {
+            const parsed = JSON.parse(line);
+            const id = typeof parsed.id === "string" ? parsed.id : undefined;
+            if (!id) {
+                continue;
+            }
+            entries.set(id, {
+                id,
+                title: firstString(parsed.thread_name, parsed.title, parsed.name),
+                updatedAt: firstString(parsed.updated_at, parsed.updatedAt)
+            });
+        }
+        catch {
+            continue;
+        }
+    }
+    return entries;
+}
+function buildThreads(files, indexEntries) {
+    return files
+        .filter((file) => path.basename(file.path).startsWith("rollout-") && file.session)
+        .map((file) => {
+        const session = file.session;
+        const indexed = indexEntries.get(session.id);
+        return {
+            id: session.id,
+            path: file.path,
+            indexed: indexed !== undefined,
+            indexTitle: indexed?.title,
+            indexUpdatedAt: indexed?.updatedAt,
+            createdAt: session.createdAt,
+            cwdBasename: session.cwdBasename,
+            cwdHash: session.cwdHash,
+            originator: session.originator,
+            cliVersion: session.cliVersion,
+            sourceKind: session.sourceKind,
+            recoverCommand: `codex resume ${session.id}`
+        };
+    })
+        .sort((a, b) => (b.createdAt ?? "").localeCompare(a.createdAt ?? ""));
+}
+function extractSessionMetadata(parsed) {
+    if (!parsed || typeof parsed !== "object") {
+        return undefined;
+    }
+    const record = parsed;
+    if (record.type !== "session_meta") {
+        return undefined;
+    }
+    const payload = record.payload && typeof record.payload === "object" ? record.payload : undefined;
+    const id = typeof payload?.id === "string" ? payload.id : undefined;
+    if (!id) {
+        return undefined;
+    }
+    const cwd = typeof payload?.cwd === "string" ? payload.cwd : undefined;
+    return {
+        id,
+        createdAt: firstString(payload?.timestamp, record.timestamp),
+        cwdBasename: cwd ? path.basename(cwd) : undefined,
+        cwdHash: cwd ? createHash("sha256").update(cwd).digest("hex").slice(0, 12) : undefined,
+        originator: firstString(payload?.originator),
+        cliVersion: firstString(payload?.cli_version),
+        sourceKind: sourceKind(payload?.source)
+    };
+}
 function countRawSignals(line, signalCounts) {
     for (const [key, pattern] of [
         ["input_image", /input_image/g],
@@ -257,6 +376,25 @@ function formatSignals(signals) {
     }
     return entries.map(([key, count]) => `${key}:${count}`).join(", ");
 }
+function firstString(...values) {
+    return values.find((value) => typeof value === "string" && value.length > 0);
+}
+function sourceKind(source) {
+    if (typeof source === "string") {
+        return source;
+    }
+    if (source && typeof source === "object") {
+        const object = source;
+        if (object.subagent) {
+            return "subagent";
+        }
+        return "object";
+    }
+    return undefined;
+}
+function escapeCell(value) {
+    return value.replace(/\|/g, "\\|").replace(/\n/g, " ");
+}
 function defaultCodexHome() {
     return path.join(os.homedir(), ".codex");
 }

package/dist/src/sessionAudit.js.map

@@ -1 +1 @@
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package/docs/CODEX_ISSUE_MAP.md

@@ -46,7 +46,7 @@ npx trace-to-skill lsp-audit . --format json
 | LSP auto-detect readiness | Codex users want language-aware navigation, diagnostics, references, rename, or install guidance before edits | language-server metadata | `trace-to-skill lsp-audit . --format json` |
 | Context compaction failures | `Error running remote compact task`, `context_length_exceeded`, compaction loops, `responses/compact` stream disconnects | `context_compaction` | `trace-to-skill analyze ./runs` |
 | Latest-turn drift | Codex answers an older prompt, repeats a previous response, redoes an already fixed task, forgets recent edits after compaction, or leaks raw tool payload text | `codex_latest_turn_drift` | `trace-to-skill codex-report ./runs` |
-| Session resume and state failures | `codex resume` picker freezes, large rollout JSONL, short `session_index.jsonl`, `Could not load archived chats`, `state_5.sqlite`, `thread_goals` | `codex_session_state` | `trace-to-skill codex-report ./runs` or `trace-to-skill session-audit ~/.codex --format json` |
+| Session resume, project history, and state failures | `codex resume` picker freezes, Desktop project/search/sidebar hides existing threads, large rollout JSONL, short or stale `session_index.jsonl`, unindexed rollout thread ids, `Could not load archived chats`, `state_5.sqlite`, `thread_goals` | `codex_session_state` | `trace-to-skill codex-report ./runs` or `trace-to-skill session-audit ~/.codex --format json` |
 | Sandbox and permission blockers | Windows sandbox setup refresh, `os error 740`, ACL/ownership drift, approval-mode mismatch | `sandbox_permission` | `trace-to-skill analyze ./runs` |
 | Auth and connectivity failures | `token_exchange_failed`, `auth.openai.com/oauth/token`, missing CA certificates, proxy/TLS, IPv6, Cloudflare, stream disconnects | `codex_connectivity` | `trace-to-skill codex-report ./runs` |
 | Remote-control routing failures | `Waiting for desktop`, `Directory: Unavailable`, stale listener/enrollment, `127.0.0.1:14567`, empty backend environments | `codex_remote_control` | `trace-to-skill codex-report ./runs` |
@@ -68,7 +68,7 @@ npx trace-to-skill lsp-audit . --format json
 - Include process names/PIDs, CPU/GPU/RSS samples, log-loop signatures, and whether killing exact PIDs or closing the app clears resource leaks.
 - Include exact tool input/output, `tool_call_id` order, affected path state, rollback evidence, and `guard-patch` output for tool-call integrity failures.
 - For undo/rewind reports, include whether you needed conversation rewind, file restore, or both; whether untracked/gitignored files were involved; and a pre-agent `checkpoint` manifest if you created one.
-- Include `session-audit` output, largest rollout JSONL sizes, largest line sizes, parse-error counts, `session_index.jsonl` line count, and state-file presence for resume/session-state failures.
+- Include `session-audit` output, largest rollout JSONL sizes, largest line sizes, parse-error counts, `session_index.jsonl` line count, unindexed rollout thread count, recoverable `codex resume <id>` commands, hashed project groups, and state-file presence for resume/session-state failures.
 - Include `diagnostics-bundle` output when the issue spans config plus local session/history state, or when you need one metadata-only folder that excludes raw logs, SQLite databases, raw config, and transcripts.
 - Include pre-first-token, thinking, tool, search, read, and compaction timings plus model/speed settings for latency regressions.
 - Include `turn/start`, `task_started`, last successful tool output, first `response_item` timestamp, `responses_http` or websocket evidence, `time.busy` / `time.idle`, MCP/subagent state, stop/interrupt behavior, and minimal-config recovery evidence for Thinking hangs.
@@ -108,7 +108,7 @@ npx trace-to-skill lsp-audit . --format json
 - Approval persistence and MCP approval friction: https://github.com/openai/codex/issues/4212, https://github.com/openai/codex/issues/13476, https://github.com/openai/codex/issues/2998
 - Config and Preferences drift: https://github.com/openai/codex/issues/25440, https://github.com/openai/codex/issues/25442, https://github.com/openai/codex/issues/20538, https://github.com/openai/codex/issues/24963
 - Latest-turn drift and compaction memory loss: https://github.com/openai/codex/issues/8648, https://github.com/openai/codex/issues/5957, https://github.com/openai/codex/issues/10823, https://github.com/openai/codex/issues/11626
-- Session state and resume failures: https://github.com/openai/codex/issues/25430, https://github.com/openai/codex/issues/25390, https://github.com/openai/codex/issues/25394, https://github.com/openai/codex/issues/25407
+- Session state, project history, and resume failures: https://github.com/openai/codex/issues/25463, https://github.com/openai/codex/issues/25092, https://github.com/openai/codex/issues/23193, https://github.com/openai/codex/issues/21119, https://github.com/openai/codex/issues/25456, https://github.com/openai/codex/issues/25430, https://github.com/openai/codex/issues/25390, https://github.com/openai/codex/issues/25394, https://github.com/openai/codex/issues/25407
 - MCP runtime failures: https://github.com/openai/codex/issues/16685, https://github.com/openai/codex/issues/18977, https://github.com/openai/codex/issues/24297, https://github.com/openai/codex/issues/23839
 - Plugin runtime and bundled capability failures: https://github.com/openai/codex/issues/25391, https://github.com/openai/codex/issues/25418, https://github.com/openai/codex/issues/25406, https://github.com/openai/codex/issues/18258
 - File tree and workspace navigation UI failures: https://github.com/openai/codex/issues/20552

package/docs/DISCOVERY.md

@@ -33,7 +33,7 @@ This page is written for maintainers, search engines, package indexes, and AI re
 - Codex approval flow repeatedly prompts after `Approve for this session`, forgets a safe approval scope, or forces large trusted MCP servers into noisy per-tool approval configs.
 - Codex config drift makes Preferences unable to save, keeps legacy `profile` / `[profiles.*]` config after migration, pins an unavailable model, resets Speed/Fast to Standard despite persisted `service_tier`, points `default_permissions` at a missing profile, enables Windows elevated sandbox mode, or references plugin cache entries that are missing on disk.
 - Codex Desktop file tree, folder icon, floating file panel, or built-in file preview disappears, goes stale, or cannot be revealed by `View > Toggle File Tree`.
-- Codex resume, Desktop history rendering, archived chats, context compression, or local state migrations fail after large JSONL histories, images, tool output, stale SQLite state, short `session_index.jsonl`, or project/thread metadata drift.
+- Codex resume, Desktop project history/search/sidebar rendering, archived chats, context compression, or local state migrations fail after large JSONL histories, images, tool output, stale SQLite state, short or stale `session_index.jsonl`, unindexed rollout threads, or project/thread metadata drift.
 - Codex model or runtime latency regresses so GPT-5.5 Fast feels like Standard, simple tasks take 10-20+ minutes, thinking stalls, or search/read/compaction phases dominate the session.
 - Codex accepts a turn, finishes local tools, or leaves a Responses stream open while the UI/CLI stays on Thinking or Working with no streamed follow-up.
 - Codex copy/export, long pasted prompts, or generated `Pasted text.txt` attachments break instruction, `/goal`, preview/edit, or support-report workflows.
@@ -137,7 +137,7 @@ npx trace-to-skill suggest ./runs --target agents-md
 
 ## Related Keywords
 
-Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex LSP, Codex language server, lsp-audit, language-server readiness, typescript-language-server, pyright-langserver, gopls, rust-analyzer, sourcekit-lsp, clangd, Codex diagnostics bundle, privacy-preserving support bundle, workspace checkpoint, pre-agent checkpoint, Codex undo, Codex rewind, untracked file restore, sensitive path audit, sensitive-audit, agentignore, .agentignore, codexignore, .codexignore, aiexclude, .aiexclude, exclude sensitive files, Codex plugin audit, Computer Use unavailable, Codex Browser plugin unavailable, bundled marketplace mismatch, generated runtime marketplace, plugin manifest missing, CODEX_HOME mismatch, Codex CLI, Codex sandbox, Windows sandbox, Codex config audit, Codex config.toml, Codex global state, .codex-global-state.json, Codex Speed reset, Codex Fast resets to Standard, service_tier fast, default-service-tier priority, has-user-changed-service-tier, Codex Preferences unable to save, configVersionConflict, default_permissions missing profile, Codex Windows helper path, Codex WindowsApps, Codex rg Access Denied, Codex ripgrep, CodexSandboxUsers, LocalCache Local OpenAI Codex bin, node_repl spawn setup refresh, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex connector auth cache, Codex Apps stale link, codex_apps_tools, codex_app_directory, Reauthentication required, refresh token revoked, isAccessible false, link_ connector, Codex deeplink, Codex OAuth callback, codex://oauth_callback, Unable to find Electron app, Error launching app, type=click&tag, AppUserModelID, DelegateExecute, codex app path, Codex remote compact, responses/compact, /compact timeout, tcp_user_timeout, stream_idle_timeout_ms, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex terminal output, Codex scrollback, Codex terminal history, terminal output integrity, missing_count, missing_examples, tmux_scrollback_repro.sh, line_truncation_repro.md, Windows Terminal scrollback, transcript mode, Codex subagent lifecycle, stale subagents, close_agent, thread_spawn_edges, agent thread limit reached, agents.max_threads, list_agents, /agents, subagent child threads, fork_context, unbiased review, subagent recent conversations, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, Codex thinking hang, Codex stuck thinking, Codex Working stuck, no streamed follow-up, first response_item delayed, responses_http time.idle, model_client.stream_responses_api, turn/start, task_started, Codex Copy as Markdown missing, Codex Pasted text.txt, Codex long pasted prompt attachment, Codex clipboard export, Codex paste as text, Codex generated attachment preview edit, Codex goal ignores attachment, pasted-text-attachments.json, fileAttachments promptRaw composer.getText, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session audit, Codex history audit, Codex session index, session_index.jsonl, Codex session state, rollout JSONL, logs_2.sqlite, codex-tui.log, sandbox.log, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage evidence, Codex rate-limit evidence, Codex usage drain, Codex usage reset, Codex weekly reset drift, reset_at changed, deterministic reset, rate limit reset, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, apply_patch Add File overwrite, patch guard, guard-patch, Add File symlink, tool_call_id, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
+Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex LSP, Codex language server, lsp-audit, language-server readiness, typescript-language-server, pyright-langserver, gopls, rust-analyzer, sourcekit-lsp, clangd, Codex diagnostics bundle, privacy-preserving support bundle, workspace checkpoint, pre-agent checkpoint, Codex undo, Codex rewind, untracked file restore, sensitive path audit, sensitive-audit, agentignore, .agentignore, codexignore, .codexignore, aiexclude, .aiexclude, exclude sensitive files, Codex plugin audit, Computer Use unavailable, Codex Browser plugin unavailable, bundled marketplace mismatch, generated runtime marketplace, plugin manifest missing, CODEX_HOME mismatch, Codex CLI, Codex sandbox, Windows sandbox, Codex config audit, Codex config.toml, Codex global state, .codex-global-state.json, Codex Speed reset, Codex Fast resets to Standard, service_tier fast, default-service-tier priority, has-user-changed-service-tier, Codex Preferences unable to save, configVersionConflict, default_permissions missing profile, Codex Windows helper path, Codex WindowsApps, Codex rg Access Denied, Codex ripgrep, CodexSandboxUsers, LocalCache Local OpenAI Codex bin, node_repl spawn setup refresh, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex connector auth cache, Codex Apps stale link, codex_apps_tools, codex_app_directory, Reauthentication required, refresh token revoked, isAccessible false, link_ connector, Codex deeplink, Codex OAuth callback, codex://oauth_callback, Unable to find Electron app, Error launching app, type=click&tag, AppUserModelID, DelegateExecute, codex app path, Codex remote compact, responses/compact, /compact timeout, tcp_user_timeout, stream_idle_timeout_ms, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex terminal output, Codex scrollback, Codex terminal history, terminal output integrity, missing_count, missing_examples, tmux_scrollback_repro.sh, line_truncation_repro.md, Windows Terminal scrollback, transcript mode, Codex subagent lifecycle, stale subagents, close_agent, thread_spawn_edges, agent thread limit reached, agents.max_threads, list_agents, /agents, subagent child threads, fork_context, unbiased review, subagent recent conversations, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex project history disappeared, Codex project threads hidden, Codex session index repair, unindexed rollout thread, codex resume thread id, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, Codex thinking hang, Codex stuck thinking, Codex Working stuck, no streamed follow-up, first response_item delayed, responses_http time.idle, model_client.stream_responses_api, turn/start, task_started, Codex Copy as Markdown missing, Codex Pasted text.txt, Codex long pasted prompt attachment, Codex clipboard export, Codex paste as text, Codex generated attachment preview edit, Codex goal ignores attachment, pasted-text-attachments.json, fileAttachments promptRaw composer.getText, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session audit, Codex history audit, Codex history map, Codex session index, session_index.jsonl, Codex session state, rollout JSONL, logs_2.sqlite, codex-tui.log, sandbox.log, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage evidence, Codex rate-limit evidence, Codex usage drain, Codex usage reset, Codex weekly reset drift, reset_at changed, deterministic reset, rate limit reset, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, apply_patch Add File overwrite, patch guard, guard-patch, Add File symlink, tool_call_id, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
 
 ## Non-Goals
 

package/docs/OPENAI_OSS_BRIEF.md

@@ -3,7 +3,7 @@
 | Field | Value |
 | --- | --- |
 | Repository | https://github.com/grnbtqdbyx-create/trace-to-skill |
-| Package | trace-to-skill@0.1.71 |
+| Package | trace-to-skill@0.1.72 |
 | License | Apache-2.0 |
 | Codex readiness | ready (100/100) |
 | Benchmark | pass, 33 cases |
@@ -27,7 +27,7 @@ API credits would power optional maintainer workflows on top of the local determ
 ## Evidence
 
 - Public repository: https://github.com/grnbtqdbyx-create/trace-to-skill
-- One-command package: npx trace-to-skill@0.1.71
+- One-command package: npx trace-to-skill@0.1.72
 - Open-source license: Apache-2.0
 - Codex readiness doctor: ready, 100/100, 0 failed checks.
 - Public fixture benchmark: pass, 33 cases.

package/docs/USE_CASES.md

@@ -53,7 +53,7 @@ What it proves:
 Recommended CI surface:
 
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.71
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.72
   with:
     mode: all
     doctor-threshold: "85"
@@ -230,9 +230,9 @@ npx trace-to-skill plugin-audit ~/.codex --app /Applications/Codex.app --format
 npx trace-to-skill diagnostics-bundle ~/.codex --output codex-diagnostics
 ```
 
-This catches signals such as `codex resume` picker hangs, `codex resume <id>` working while the picker freezes, large `rollout-*.jsonl` histories, high JSONL line and `response_item` / `event_msg` / `function_call` counts, large `input_image` payloads, slow `thread/resume` and `thread/goal/get` timings, `Could not load archived chats`, resume compression dropping the last 3-5 turns, `state_5.sqlite` / `goals_1.sqlite` migration mismatches, `no such table: thread_goals`, stale `projectless-thread-ids`, and `thread-workspace-root-hints` reverting after restart.
+This catches signals such as `codex resume` picker hangs, `codex resume <id>` working while the picker freezes, project pages/search/sidebar hiding threads that still exist on disk, large `rollout-*.jsonl` histories, high JSONL line and `response_item` / `event_msg` / `function_call` counts, large `input_image` payloads, slow `thread/resume` and `thread/goal/get` timings, `Could not load archived chats`, resume compression dropping the last 3-5 turns, `state_5.sqlite` / `goals_1.sqlite` migration mismatches, `no such table: thread_goals`, stale `projectless-thread-ids`, and `thread-workspace-root-hints` reverting after restart.
 
-`session-audit` is local and read-only: it reports rollout JSONL size, line count, largest line size, parse errors, session index line count, state-file presence, and common session signals so users can attach a privacy-preserving summary to OpenAI/Codex issues instead of posting transcripts.
+`session-audit` is local and read-only: it reports rollout JSONL size, line count, largest line size, parse errors, session index line count, state-file presence, recoverable thread ids, `codex resume <id>` commands, and common session signals so users can attach a privacy-preserving summary to OpenAI/Codex issues instead of posting transcripts. Full workspace paths are not printed in the thread table; related projects are grouped by basename plus a short path hash.
 
 For mixed resume, crash, config, plugin, or history issues, `diagnostics-bundle` writes the session, config, and plugin reports together with a checklist of files not to attach publicly.
 

package/llms.txt

@@ -106,7 +106,7 @@ npx trace-to-skill init --comment --sarif
 ## GitHub Action
 
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.71
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.72
   with:
     mode: all
     doctor-threshold: "85"

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "trace-to-skill",
-  "version": "0.1.71",
+  "version": "0.1.72",
   "description": "Turn failed AI coding-agent runs into reusable AGENTS.md rules, SKILL.md files, and eval evidence.",
   "type": "module",
   "main": "dist/src/index.js",
@@ -125,7 +125,9 @@
     "codex-resume",
     "codex-session-audit",
     "codex-history",
+    "codex-history-map",
     "codex-session-index",
+    "codex-project-history",
     "codex-issue-report",
     "openai-triage",
     "openai-oss",

package/schemas/session-audit-result.schema.json

@@ -4,7 +4,7 @@
   "title": "trace-to-skill Codex session audit result",
   "type": "object",
   "additionalProperties": false,
-  "required": ["generatedAt", "root", "status", "thresholds", "summary", "files", "stateFiles", "findings"],
+  "required": ["generatedAt", "root", "status", "thresholds", "summary", "files", "threads", "stateFiles", "findings"],
   "properties": {
     "generatedAt": {
       "type": "string",
@@ -29,6 +29,12 @@
         "$ref": "#/$defs/file"
       }
     },
+    "threads": {
+      "type": "array",
+      "items": {
+        "$ref": "#/$defs/thread"
+      }
+    },
     "stateFiles": {
       "type": "array",
       "items": {
@@ -61,7 +67,7 @@
     "summary": {
       "type": "object",
       "additionalProperties": false,
-      "required": ["jsonlFiles", "totalBytes", "largeFiles", "hugeLineFiles", "parseErrorFiles"],
+      "required": ["jsonlFiles", "totalBytes", "largeFiles", "hugeLineFiles", "parseErrorFiles", "rolloutThreads", "indexedThreads", "unindexedRolloutThreads", "projectRoots"],
       "properties": {
         "jsonlFiles": {
           "type": "integer",
@@ -90,6 +96,22 @@
         "rolloutFiles": {
           "type": "integer",
           "minimum": 0
+        },
+        "rolloutThreads": {
+          "type": "integer",
+          "minimum": 0
+        },
+        "indexedThreads": {
+          "type": "integer",
+          "minimum": 0
+        },
+        "unindexedRolloutThreads": {
+          "type": "integer",
+          "minimum": 0
+        },
+        "projectRoots": {
+          "type": "integer",
+          "minimum": 0
         }
       }
     },
@@ -130,6 +152,80 @@
             "type": "integer",
             "minimum": 0
           }
+        },
+        "session": {
+          "$ref": "#/$defs/threadMetadata"
+        }
+      }
+    },
+    "threadMetadata": {
+      "type": "object",
+      "additionalProperties": false,
+      "required": ["id"],
+      "properties": {
+        "id": {
+          "type": "string"
+        },
+        "createdAt": {
+          "type": "string"
+        },
+        "cwdBasename": {
+          "type": "string"
+        },
+        "cwdHash": {
+          "type": "string"
+        },
+        "originator": {
+          "type": "string"
+        },
+        "cliVersion": {
+          "type": "string"
+        },
+        "sourceKind": {
+          "type": "string"
+        }
+      }
+    },
+    "thread": {
+      "type": "object",
+      "additionalProperties": false,
+      "required": ["id", "path", "indexed", "recoverCommand"],
+      "properties": {
+        "id": {
+          "type": "string"
+        },
+        "path": {
+          "type": "string"
+        },
+        "indexed": {
+          "type": "boolean"
+        },
+        "indexTitle": {
+          "type": "string"
+        },
+        "indexUpdatedAt": {
+          "type": "string"
+        },
+        "createdAt": {
+          "type": "string"
+        },
+        "cwdBasename": {
+          "type": "string"
+        },
+        "cwdHash": {
+          "type": "string"
+        },
+        "originator": {
+          "type": "string"
+        },
+        "cliVersion": {
+          "type": "string"
+        },
+        "sourceKind": {
+          "type": "string"
+        },
+        "recoverCommand": {
+          "type": "string"
         }
       }
     },
@@ -161,7 +257,7 @@
         },
         "kind": {
           "type": "string",
-          "enum": ["large_rollout", "huge_jsonl_line", "json_parse_error", "short_session_index", "state_file_present"]
+          "enum": ["large_rollout", "huge_jsonl_line", "json_parse_error", "short_session_index", "unindexed_rollout_thread", "state_file_present"]
         },
         "path": {
           "type": "string"