trace-to-skill 0.1.69 → 0.1.71

package/dist/src/usageEvidence.js

@@ -6,6 +6,7 @@ export function buildUsageEvidenceFromInputs(inputs) {
     const snapshots = [];
     const tokenUsage = [];
     const usageLimitSignals = [];
+    const overheadSignals = [];
     for (const input of inputs) {
         const lines = input.content.split(/\r?\n/);
         lines.forEach((line, index) => {
@@ -25,12 +26,17 @@ export function buildUsageEvidenceFromInputs(inputs) {
             if (tokenRecord) {
                 tokenUsage.push(tokenRecord);
             }
+            const overheadSignal = parseOverheadSignal(input.path, lineNumber, excerpt);
+            if (overheadSignal) {
+                overheadSignals.push(overheadSignal);
+            }
             if (/\b(hit|reached|exceeded).{0,80}\b(usage|rate|quota|weekly|5-hour|5 hour|limit)\b/i.test(excerpt) || /you(?:'|')?ve hit your usage limit/i.test(excerpt)) {
                 usageLimitSignals.push({ source: input.path, line: lineNumber, excerpt });
             }
         });
     }
-    const findings = buildFindings(snapshots, tokenUsage, usageLimitSignals);
+    const findings = buildFindings(snapshots, tokenUsage, usageLimitSignals, overheadSignals);
+    const receipt = buildReceipt(snapshots, tokenUsage, overheadSignals, usageLimitSignals);
     return {
         generatedAt: new Date().toISOString(),
         status: findings.length > 0 ? "warn" : "pass",
@@ -40,10 +46,12 @@ export function buildUsageEvidenceFromInputs(inputs) {
             tokenUsageRecords: tokenUsage.length,
             usageLimitSignals: usageLimitSignals.length,
             resetDriftWindows: findings.filter((finding) => finding.kind === "reset_timestamp_drift").length,
-            highCachedInputRecords: findings.filter((finding) => finding.kind === "high_cached_input").length
+            highCachedInputRecords: findings.filter((finding) => finding.kind === "high_cached_input").length,
+            overheadSignals: overheadSignals.length
         },
         snapshots,
         tokenUsage,
+        receipt,
         findings,
         checklist: [
             "Attach this report instead of raw private transcripts.",
@@ -51,6 +59,7 @@ export function buildUsageEvidenceFromInputs(inputs) {
             "Capture before/after `/status` output, usage dashboard timestamp, and timezone for every reset value.",
             "Note whether a prompt was running during reset and whether an outage or compensation reset was announced.",
             "Include token totals when available: total, input, cached input, output, and reasoning.",
+            "Separate quota-window percentage changes from local token totals and orchestration overhead signals.",
             "Add one minimal reproduction or polling table that shows the percentage and reset timestamp changing."
         ]
     };
@@ -69,6 +78,7 @@ export function renderUsageEvidenceMarkdown(result) {
         `- Usage limit signals: ${result.summary.usageLimitSignals}`,
         `- Reset drift windows: ${result.summary.resetDriftWindows}`,
         `- High cached-input records: ${result.summary.highCachedInputRecords}`,
+        `- Overhead signals: ${result.summary.overheadSignals}`,
         ""
     ];
     if (result.findings.length > 0) {
@@ -84,6 +94,57 @@ export function renderUsageEvidenceMarkdown(result) {
             lines.push("");
         }
     }
+    lines.push("## Usage Receipt", "");
+    lines.push("This section separates backend quota-window evidence, local token totals, and orchestration-overhead signals so reports do not collapse every symptom into one number.", "");
+    lines.push("### Quota Windows", "");
+    if (result.receipt.quotaWindows.length === 0) {
+        lines.push("_No quota-window snapshots found._", "");
+    }
+    else {
+        lines.push("| Window | Samples | First Percent | Last Percent | Reset Values |");
+        lines.push("| --- | ---: | ---: | ---: | --- |");
+        for (const window of result.receipt.quotaWindows) {
+            lines.push([
+                escapeCell(window.window),
+                String(window.samples),
+                formatNumber(window.firstPercent),
+                formatNumber(window.lastPercent),
+                escapeCell(window.resetValues.join(", "))
+            ].join(" | ").replace(/^/, "| ").replace(/$/, " |"));
+        }
+        lines.push("");
+    }
+    lines.push("### Local Token Totals", "");
+    lines.push("| Total | Input | Cached Input | Output | Reasoning |");
+    lines.push("| ---: | ---: | ---: | ---: | ---: |");
+    lines.push([
+        formatNumber(result.receipt.localTokenTotals.total),
+        formatNumber(result.receipt.localTokenTotals.input),
+        formatNumber(result.receipt.localTokenTotals.cachedInput),
+        formatNumber(result.receipt.localTokenTotals.output),
+        formatNumber(result.receipt.localTokenTotals.reasoning)
+    ].join(" | ").replace(/^/, "| ").replace(/$/, " |"));
+    lines.push("");
+    lines.push("### Overhead Signals", "");
+    if (result.receipt.overheadSignals.length === 0) {
+        lines.push("_No background polling, compaction loop, retry/tool loop, subagent fan-out, or idle-drain signals found._", "");
+    }
+    else {
+        for (const signal of result.receipt.overheadSignals.slice(0, 12)) {
+            lines.push(`- **${signal.kind}**: ${signal.source}:${signal.line} - ${signal.excerpt}`);
+        }
+        lines.push("");
+    }
+    lines.push("### Suspected Cause Buckets", "");
+    if (result.receipt.suspectedCauses.length === 0) {
+        lines.push("_No cause bucket inferred from the supplied evidence._", "");
+    }
+    else {
+        for (const cause of result.receipt.suspectedCauses) {
+            lines.push(`- ${cause}`);
+        }
+        lines.push("");
+    }
     lines.push("## Usage Snapshots", "");
     if (result.snapshots.length === 0) {
         lines.push("_No usage percentage or reset snapshots found._", "");
@@ -229,7 +290,16 @@ function parseTokenUsage(source, line, excerpt) {
     }
     return { source, line, total, input, cachedInput, output, reasoning, excerpt };
 }
-function buildFindings(snapshots, tokenUsage, usageLimitSignals) {
+function parseOverheadSignal(source, line, excerpt) {
+    const kind = /\bwrite_stdin\b|\b(empty|idle).{0,30}\bpoll/i.test(excerpt) ? "background_polling" :
+        /\b(compaction|compact).{0,80}\b(loop|again|repeat|relaunch|75%|context window)\b/i.test(excerpt) ? "compaction_loop" :
+            /\b(retry|retries|retrying|tool loop|failed operation|same tool).{0,80}\b(repeat|loop|again|no progress)\b/i.test(excerpt) ? "retry_or_tool_loop" :
+                /\b(subagent|sub-agent|agents\.max_threads|agent thread limit|fan-out|spawned).{0,80}\b(agent|thread|session|quota|usage)\b/i.test(excerpt) ? "subagent_fanout" :
+                    /\b(idle|only open|background).{0,80}\b(usage|tokens|quota|burn|drain|consum)/i.test(excerpt) ? "idle_drain" :
+                        undefined;
+    return kind ? { kind, source, line, excerpt } : undefined;
+}
+function buildFindings(snapshots, tokenUsage, usageLimitSignals, overheadSignals) {
     const findings = [];
     const byWindow = new Map();
     for (const snapshot of snapshots) {
@@ -298,8 +368,72 @@ function buildFindings(snapshots, tokenUsage, usageLimitSignals) {
             });
         }
     }
+    for (const signal of overheadSignals) {
+        findings.push({
+            kind: "orchestration_overhead_signal",
+            severity: signal.kind === "compaction_loop" || signal.kind === "retry_or_tool_loop" ? "high" : "medium",
+            title: `Potential ${signal.kind.replace(/_/g, " ")} overhead`,
+            why: "The evidence mentions a local orchestration pattern that can burn tokens without a clean accepted-work result.",
+            evidence: [{ file: signal.source, line: signal.line, excerpt: signal.excerpt }],
+            nextStep: "Report this separately from quota percentages and token totals so maintainers can distinguish useful model work from local orchestration overhead."
+        });
+    }
     return dedupeFindings(findings);
 }
+function buildReceipt(snapshots, tokenUsage, overheadSignals, usageLimitSignals) {
+    const byWindow = new Map();
+    for (const snapshot of snapshots) {
+        const window = snapshot.window || "unknown";
+        byWindow.set(window, [...(byWindow.get(window) ?? []), snapshot]);
+    }
+    const quotaWindows = [...byWindow.entries()].map(([window, items]) => {
+        const percentSamples = items.filter((item) => item.percent !== undefined);
+        return {
+            window,
+            samples: items.length,
+            firstPercent: percentSamples[0]?.percent,
+            lastPercent: percentSamples[percentSamples.length - 1]?.percent,
+            resetValues: [...new Set(items.map((item) => item.resetAt).filter((value) => Boolean(value)))]
+        };
+    }).sort((a, b) => a.window.localeCompare(b.window));
+    const localTokenTotals = tokenUsage.reduce((totals, record) => ({
+        total: addOptional(totals.total, record.total),
+        input: addOptional(totals.input, record.input),
+        cachedInput: addOptional(totals.cachedInput, record.cachedInput),
+        output: addOptional(totals.output, record.output),
+        reasoning: addOptional(totals.reasoning, record.reasoning)
+    }), {});
+    const suspectedCauses = new Set();
+    if (usageLimitSignals.length > 0 || snapshots.length > 0) {
+        suspectedCauses.add("quota-window or dashboard accounting");
+    }
+    if (tokenUsage.some((record) => record.cachedInput !== undefined && record.cachedInput >= 1_000_000)) {
+        suspectedCauses.add("large cached-context replay");
+    }
+    for (const signal of overheadSignals) {
+        if (signal.kind === "background_polling") {
+            suspectedCauses.add("background polling");
+        }
+        else if (signal.kind === "compaction_loop") {
+            suspectedCauses.add("compaction loop");
+        }
+        else if (signal.kind === "retry_or_tool_loop") {
+            suspectedCauses.add("retry or tool loop");
+        }
+        else if (signal.kind === "subagent_fanout") {
+            suspectedCauses.add("subagent fan-out");
+        }
+        else if (signal.kind === "idle_drain") {
+            suspectedCauses.add("idle/background drain");
+        }
+    }
+    return {
+        quotaWindows,
+        localTokenTotals,
+        overheadSignals,
+        suspectedCauses: [...suspectedCauses].sort((a, b) => a.localeCompare(b))
+    };
+}
 function findPercentageJumps(items) {
     const ordered = items.filter((item) => item.percent !== undefined);
     const jumps = [];
@@ -394,6 +528,15 @@ function parseInteger(value) {
     const parsed = Number(value.replace(/,/g, ""));
     return Number.isFinite(parsed) ? parsed : undefined;
 }
+function addOptional(a, b) {
+    if (a === undefined) {
+        return b;
+    }
+    if (b === undefined) {
+        return a;
+    }
+    return a + b;
+}
 function cleanValue(value) {
     return (value ?? "").replace(/\*\*/g, "").replace(/`/g, "").trim();
 }

package/dist/src/usageEvidence.js.map

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package/docs/ADOPTION_GUIDE.md

@@ -95,6 +95,7 @@ For dashboards, bots, or custom CI:
 - `schemas/doctor-result.schema.json` describes `trace-to-skill doctor --format json`.
 - `schemas/redact-result.schema.json` describes `trace-to-skill redact --format json`.
 - `schemas/scorecard-result.schema.json` describes `trace-to-skill scorecard --format json`.
+- `schemas/workspace-checkpoint-result.schema.json` describes `trace-to-skill checkpoint --format json`.
 
 Use the schemas instead of scraping Markdown reports.
 

package/docs/CODEX_ISSUE_MAP.md

@@ -13,6 +13,7 @@ npx trace-to-skill codex-report redacted-runs --output openai-codex-issue.md
 npx trace-to-skill usage-evidence ./usage-notes.md --output usage-evidence.md
 npx trace-to-skill plugin-audit ~/.codex --app /Applications/Codex.app --format json
 npx trace-to-skill diagnostics-bundle ~/.codex --output codex-diagnostics
+npx trace-to-skill checkpoint . --output .trace-to-skill/checkpoints/before-codex
 npx trace-to-skill sensitive-audit . --format json
 npx trace-to-skill lsp-audit . --format json
 ```
@@ -21,12 +22,13 @@ npx trace-to-skill lsp-audit . --format json
 
 | OpenAI/Codex issue cluster | Common signals | Finding kind | Best command |
 | --- | --- | --- | --- |
-| Token burn and usage drain | `tokens burning very fast`, large cached input totals, `write_stdin` empty polls, idle app usage, compaction tax, retry loops | `codex_token_burn` | `trace-to-skill usage-evidence ./usage-notes.md` or `trace-to-skill codex-report ./runs` |
+| Token burn and usage drain | `tokens burning very fast`, large cached input totals, `write_stdin` empty polls, idle app usage, compaction tax, retry loops, subagent fan-out | `codex_token_burn` plus usage receipt | `trace-to-skill usage-evidence ./usage-notes.md` first, then `trace-to-skill codex-report ./runs` for trace reports |
 | Usage reset schedule drift | weekly reset time changes, `reset_at` jumps, saved quota is wiped or pushed into the next window, outage compensation reset changes the anchor | `codex_usage_reset_drift` | `trace-to-skill usage-evidence ./usage-notes.md` or `trace-to-skill codex-report ./runs` |
 | Remote compact task failures | `/compact` or auto-compact fails, `responses/compact` stream disconnects, `timeout waiting for child process to exit`, `tcp_user_timeout` or `stream_idle_timeout_ms` workarounds, provider-id timeout drift | `codex_remote_compact` | `trace-to-skill codex-report ./runs` |
 | Windows helper and bundled tool path failures | bundled `rg.exe`, `node_repl.exe`, `codex-command-runner.exe`, Browser, Chrome, or Computer Use helpers resolve through `WindowsApps`, missing `%LOCALAPPDATA%\OpenAI\Codex\bin`, broken LocalCache helper bins, `CodexSandboxUsers` ACL gaps, EFS/copyfile failures | `codex_windows_helper_path` | `trace-to-skill codex-report ./runs` |
 | Resource leaks and runaway processes | high CPU/GPU/RAM, `Code Helper`, `Codex Helper Renderer`, orphaned `shell-snapshot`, `syspolicyd`, log floods, thinking animation GPU loops | `codex_resource_leak` | `trace-to-skill codex-report ./runs` |
 | Tool-call integrity and rollback failures | `apply_patch` overwrites an existing `Add File` target, unmatched `tool_call_id`, `close_agent` hangs, failed revert/undo, unsafe diff application | `codex_tool_call_integrity` | `trace-to-skill codex-report ./runs` or `trace-to-skill guard-patch ./change.patch --root .` |
+| Undo, rewind, and pre-agent checkpoint needs | users want `/undo` or `/rewind`, double-Esc only rewinds chat state, untracked/gitignored files are not protected by commits, and manual recovery needs reviewable pre-agent evidence | workspace checkpoint bundle | `trace-to-skill checkpoint . --output .trace-to-skill/checkpoints/before-codex` before agent work |
 | Latency regressions | GPT-5.5 Fast feels like Standard, simple tasks take 10-20+ minutes, pre-first-token or thinking stalls, slow search/read/compaction, hours for small code changes | `codex_latency_regression` | `trace-to-skill codex-report ./runs` |
 | Thinking or stream hangs | accepted turn, completed local tool output, no streamed assistant follow-up, long gap before first `response_item`, `time.busy` milliseconds with `time.idle` hundreds of seconds, Stop/Ctrl+C cannot interrupt, subagent parent stuck | `codex_thinking_hang` | `trace-to-skill codex-report ./runs` or `trace-to-skill demo thinking-hang` |
 | Clipboard, paste, and generated attachment regressions | `Copy as Markdown` missing, Copy menu only exports metadata, long pasted prompts become `Pasted text.txt`, generated attachments cannot preview/edit/revert, `/goal` ignores non-empty fileAttachments | `codex_clipboard_attachment` | `trace-to-skill codex-report ./runs` or `trace-to-skill demo clipboard-attachment` |
@@ -65,6 +67,7 @@ npx trace-to-skill lsp-audit . --format json
 - Include `Get-Command rg -All`, `where.exe rg`, exact WindowsApps/LocalCache helper paths, `%LOCALAPPDATA%\OpenAI\Codex\bin` listing, `icacls`/`CodexSandboxUsers` RX state, file attributes, node_repl/plugin diagnostics, and sandbox mode for Windows helper path failures.
 - Include process names/PIDs, CPU/GPU/RSS samples, log-loop signatures, and whether killing exact PIDs or closing the app clears resource leaks.
 - Include exact tool input/output, `tool_call_id` order, affected path state, rollback evidence, and `guard-patch` output for tool-call integrity failures.
+- For undo/rewind reports, include whether you needed conversation rewind, file restore, or both; whether untracked/gitignored files were involved; and a pre-agent `checkpoint` manifest if you created one.
 - Include `session-audit` output, largest rollout JSONL sizes, largest line sizes, parse-error counts, `session_index.jsonl` line count, and state-file presence for resume/session-state failures.
 - Include `diagnostics-bundle` output when the issue spans config plus local session/history state, or when you need one metadata-only folder that excludes raw logs, SQLite databases, raw config, and transcripts.
 - Include pre-first-token, thinking, tool, search, read, and compaction timings plus model/speed settings for latency regressions.
@@ -85,6 +88,7 @@ npx trace-to-skill lsp-audit . --format json
 - For sensitive-file reports, attach only redacted excerpts and the file path/class, not the original credential material.
 - For preflight exclusion reports, attach `sensitive-audit` output and recommended exclude globs; it does not read file contents or follow symlink targets.
 - For LSP readiness reports, attach `lsp-audit` output so maintainers can see detected languages, evidence files, missing server commands, and install hints without auto-installing tools.
+- For token-burn reports, attach `usage-evidence` output so quota-window percentages, local token totals, cached input, and orchestration-overhead signals are not collapsed into one ambiguous symptom.
 
 ## Related OpenAI/Codex Threads Used For Fixtures
 
@@ -94,6 +98,7 @@ npx trace-to-skill lsp-audit . --format json
 - Windows helper and bundled tool path failures: https://github.com/openai/codex/issues/13542, https://github.com/openai/codex/issues/25357, https://github.com/openai/codex/issues/25220
 - Resource leaks and runaway processes: https://github.com/openai/codex/issues/16231, https://github.com/openai/codex/issues/11981, https://github.com/openai/codex/issues/16857, https://github.com/openai/codex/issues/25388
 - Tool-call integrity and rollback failures: https://github.com/openai/codex/issues/25399, https://github.com/openai/codex/issues/25380, https://github.com/openai/codex/issues/25426, https://github.com/openai/codex/issues/7291
+- Undo, rewind, and pre-agent checkpoint needs: https://github.com/openai/codex/issues/9203, https://github.com/openai/codex/issues/11626
 - Latency regressions: https://github.com/openai/codex/issues/24422, https://github.com/openai/codex/issues/21527, https://github.com/openai/codex/issues/11984, https://github.com/openai/codex/issues/12161
 - Deeplink, OAuth callback, and external launch regressions: https://github.com/openai/codex/issues/25203, https://github.com/openai/codex/issues/25231, https://github.com/openai/codex/issues/25368, https://github.com/openai/codex/issues/25333
 - App connector auth cache and stale link regressions: https://github.com/openai/codex/issues/24675, https://github.com/openai/codex/issues/25443

package/docs/DISCOVERY.md

@@ -41,7 +41,9 @@ This page is written for maintainers, search engines, package indexes, and AI re
 - Codex app connectors keep stale `link_*` authorization or discovery metadata after `401 Reauthentication required`, plugin reinstall, app restart, or cache regeneration.
 - Codex usage drains unexpectedly because of background `write_stdin` polling, idle app activity, compaction/replay overhead, retry loops, subagent fan-out, fast-mode drift, or cached-token-heavy turns.
 - Codex weekly or 5-hour reset anchors move unexpectedly, saved usage is lost, or `/status` and the dashboard disagree about reset timing or enforcement.
-- Codex usage evidence is scattered across `/status`, dashboard notes, reset tables, usage-limit messages, and token totals, making high-signal reports hard to file.
+- Codex usage evidence is scattered across `/status`, dashboard notes, reset tables, usage-limit messages, token totals, cached input, and overhead clues, making high-signal reports hard to file.
+- Codex token-burn reports need a receipt that separates backend quota-window percentages, local token totals, and orchestration overhead such as background polling, compaction loops, retry/tool loops, subagent fan-out, or idle drain.
+- Codex users need a local checkpoint before agent edits because conversation rewind does not protect untracked dirty workspace files.
 - Codex `/compact` or auto-compaction fails against the remote `responses/compact` endpoint with stream disconnects, child-process timeout messages, provider timeout workarounds, or long-thread recovery loss.
 - Codex Desktop, app-server, VS Code extension, renderer, GPU, shell snapshot, or helper processes leak local resources or keep burning CPU/GPU/RAM after the useful work should be idle.
 - Codex reports `You've hit your usage limit` even though `/status` or the usage dashboard shows quota left, or quota appears shared across accounts.
@@ -85,6 +87,7 @@ npx trace-to-skill config-audit ~/.codex --format json
 npx trace-to-skill plugin-audit ~/.codex --app /Applications/Codex.app --format json
 npx trace-to-skill diagnostics-bundle ~/.codex --output codex-diagnostics
 npx trace-to-skill usage-evidence ./usage-notes.md --output usage-evidence.md
+npx trace-to-skill checkpoint . --output .trace-to-skill/checkpoints/before-codex
 npx trace-to-skill redact ./runs --output redacted-runs
 npx trace-to-skill analyze ./runs --format json
 npx trace-to-skill codex-report ./runs --output openai-codex-issue.md
@@ -106,6 +109,7 @@ npx trace-to-skill suggest ./runs --target agents-md
 - `trace-to-skill plugin-audit --format json`
 - `trace-to-skill diagnostics-bundle --format json`
 - `trace-to-skill usage-evidence --format json`
+- `trace-to-skill checkpoint --format json`
 - SARIF from `trace-to-skill analyze --format sarif`
 - OpenAI/Codex issue-ready Markdown from `trace-to-skill codex-report`
 - Packaged zero-setup Codex issue-report demo from `trace-to-skill demo`
@@ -129,10 +133,11 @@ npx trace-to-skill suggest ./runs --target agents-md
 - `schemas/plugin-audit-result.schema.json`
 - `schemas/session-audit-result.schema.json`
 - `schemas/usage-evidence-result.schema.json`
+- `schemas/workspace-checkpoint-result.schema.json`
 
 ## Related Keywords
 
-Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex LSP, Codex language server, lsp-audit, language-server readiness, typescript-language-server, pyright-langserver, gopls, rust-analyzer, sourcekit-lsp, clangd, Codex diagnostics bundle, privacy-preserving support bundle, sensitive path audit, sensitive-audit, agentignore, .agentignore, codexignore, .codexignore, aiexclude, .aiexclude, exclude sensitive files, Codex plugin audit, Computer Use unavailable, Codex Browser plugin unavailable, bundled marketplace mismatch, generated runtime marketplace, plugin manifest missing, CODEX_HOME mismatch, Codex CLI, Codex sandbox, Windows sandbox, Codex config audit, Codex config.toml, Codex global state, .codex-global-state.json, Codex Speed reset, Codex Fast resets to Standard, service_tier fast, default-service-tier priority, has-user-changed-service-tier, Codex Preferences unable to save, configVersionConflict, default_permissions missing profile, Codex Windows helper path, Codex WindowsApps, Codex rg Access Denied, Codex ripgrep, CodexSandboxUsers, LocalCache Local OpenAI Codex bin, node_repl spawn setup refresh, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex connector auth cache, Codex Apps stale link, codex_apps_tools, codex_app_directory, Reauthentication required, refresh token revoked, isAccessible false, link_ connector, Codex deeplink, Codex OAuth callback, codex://oauth_callback, Unable to find Electron app, Error launching app, type=click&tag, AppUserModelID, DelegateExecute, codex app path, Codex remote compact, responses/compact, /compact timeout, tcp_user_timeout, stream_idle_timeout_ms, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex terminal output, Codex scrollback, Codex terminal history, terminal output integrity, missing_count, missing_examples, tmux_scrollback_repro.sh, line_truncation_repro.md, Windows Terminal scrollback, transcript mode, Codex subagent lifecycle, stale subagents, close_agent, thread_spawn_edges, agent thread limit reached, agents.max_threads, list_agents, /agents, subagent child threads, fork_context, unbiased review, subagent recent conversations, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, Codex thinking hang, Codex stuck thinking, Codex Working stuck, no streamed follow-up, first response_item delayed, responses_http time.idle, model_client.stream_responses_api, turn/start, task_started, Codex Copy as Markdown missing, Codex Pasted text.txt, Codex long pasted prompt attachment, Codex clipboard export, Codex paste as text, Codex generated attachment preview edit, Codex goal ignores attachment, pasted-text-attachments.json, fileAttachments promptRaw composer.getText, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session audit, Codex history audit, Codex session index, session_index.jsonl, Codex session state, rollout JSONL, logs_2.sqlite, codex-tui.log, sandbox.log, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage evidence, Codex rate-limit evidence, Codex usage drain, Codex usage reset, Codex weekly reset drift, reset_at changed, deterministic reset, rate limit reset, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, apply_patch Add File overwrite, patch guard, guard-patch, Add File symlink, tool_call_id, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
+Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex LSP, Codex language server, lsp-audit, language-server readiness, typescript-language-server, pyright-langserver, gopls, rust-analyzer, sourcekit-lsp, clangd, Codex diagnostics bundle, privacy-preserving support bundle, workspace checkpoint, pre-agent checkpoint, Codex undo, Codex rewind, untracked file restore, sensitive path audit, sensitive-audit, agentignore, .agentignore, codexignore, .codexignore, aiexclude, .aiexclude, exclude sensitive files, Codex plugin audit, Computer Use unavailable, Codex Browser plugin unavailable, bundled marketplace mismatch, generated runtime marketplace, plugin manifest missing, CODEX_HOME mismatch, Codex CLI, Codex sandbox, Windows sandbox, Codex config audit, Codex config.toml, Codex global state, .codex-global-state.json, Codex Speed reset, Codex Fast resets to Standard, service_tier fast, default-service-tier priority, has-user-changed-service-tier, Codex Preferences unable to save, configVersionConflict, default_permissions missing profile, Codex Windows helper path, Codex WindowsApps, Codex rg Access Denied, Codex ripgrep, CodexSandboxUsers, LocalCache Local OpenAI Codex bin, node_repl spawn setup refresh, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex connector auth cache, Codex Apps stale link, codex_apps_tools, codex_app_directory, Reauthentication required, refresh token revoked, isAccessible false, link_ connector, Codex deeplink, Codex OAuth callback, codex://oauth_callback, Unable to find Electron app, Error launching app, type=click&tag, AppUserModelID, DelegateExecute, codex app path, Codex remote compact, responses/compact, /compact timeout, tcp_user_timeout, stream_idle_timeout_ms, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex terminal output, Codex scrollback, Codex terminal history, terminal output integrity, missing_count, missing_examples, tmux_scrollback_repro.sh, line_truncation_repro.md, Windows Terminal scrollback, transcript mode, Codex subagent lifecycle, stale subagents, close_agent, thread_spawn_edges, agent thread limit reached, agents.max_threads, list_agents, /agents, subagent child threads, fork_context, unbiased review, subagent recent conversations, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, Codex thinking hang, Codex stuck thinking, Codex Working stuck, no streamed follow-up, first response_item delayed, responses_http time.idle, model_client.stream_responses_api, turn/start, task_started, Codex Copy as Markdown missing, Codex Pasted text.txt, Codex long pasted prompt attachment, Codex clipboard export, Codex paste as text, Codex generated attachment preview edit, Codex goal ignores attachment, pasted-text-attachments.json, fileAttachments promptRaw composer.getText, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session audit, Codex history audit, Codex session index, session_index.jsonl, Codex session state, rollout JSONL, logs_2.sqlite, codex-tui.log, sandbox.log, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage evidence, Codex rate-limit evidence, Codex usage drain, Codex usage reset, Codex weekly reset drift, reset_at changed, deterministic reset, rate limit reset, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, apply_patch Add File overwrite, patch guard, guard-patch, Add File symlink, tool_call_id, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
 
 ## Non-Goals
 

package/docs/OPENAI_OSS_BRIEF.md

@@ -3,7 +3,7 @@
 | Field | Value |
 | --- | --- |
 | Repository | https://github.com/grnbtqdbyx-create/trace-to-skill |
-| Package | trace-to-skill@0.1.69 |
+| Package | trace-to-skill@0.1.71 |
 | License | Apache-2.0 |
 | Codex readiness | ready (100/100) |
 | Benchmark | pass, 33 cases |
@@ -27,7 +27,7 @@ API credits would power optional maintainer workflows on top of the local determ
 ## Evidence
 
 - Public repository: https://github.com/grnbtqdbyx-create/trace-to-skill
-- One-command package: npx trace-to-skill@0.1.69
+- One-command package: npx trace-to-skill@0.1.71
 - Open-source license: Apache-2.0
 - Codex readiness doctor: ready, 100/100, 0 failed checks.
 - Public fixture benchmark: pass, 33 cases.

package/docs/USE_CASES.md

@@ -53,7 +53,7 @@ What it proves:
 Recommended CI surface:
 
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.69
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.71
   with:
     mode: all
     doctor-threshold: "85"
@@ -144,14 +144,21 @@ This catches signals such as `Error running remote compact task`, `timeout waiti
 
 ## 8. Codex Usage Evidence Packaging
 
-Use this when a Codex usage issue has scattered evidence across `/status`, dashboard notes, reset tables, and token totals.
+Use this when a Codex usage issue has scattered evidence across `/status`, dashboard notes, reset tables, token totals, cached input, and local overhead clues.
 
 ```bash
 npx trace-to-skill usage-evidence ./usage-notes.md --output usage-evidence.md
 npx trace-to-skill usage-evidence ./usage-notes.md --format json
 ```
 
-This turns Markdown polling tables, CSV-like rows, JSON/JSONL snapshots, `reset_at` values, usage-limit errors, and `Token usage: total=... cached` lines into a single report with reset drift, quota jumps, cached-input-heavy turns, and remaining-quota contradictions.
+This turns Markdown polling tables, CSV-like rows, JSON/JSONL snapshots, `reset_at` values, usage-limit errors, `Token usage: total=... cached` lines, `write_stdin` polling, compaction loops, retry/tool loops, subagent fan-out, and idle-drain notes into a single report with a usage receipt.
+
+The receipt separates:
+
+- backend quota-window percentage evidence
+- local token totals, including cached input and reasoning
+- orchestration-overhead signals that may burn usage without accepted work
+- suspected cause buckets to keep public reports comparable
 
 ## 9. Codex Windows Helper Path Triage
 
@@ -251,6 +258,8 @@ npx trace-to-skill codex-report ./runs --output openai-codex-issue.md
 
 This catches signals such as tokens `burning very fast`, usage dropping by visible percentages after one or two prompts, weekly allowance depletion, 5-hour usage reaching 0%, large `input` plus `cached input` totals, `write_stdin` empty polling, background commands repeatedly reporting no new output, idle app usage, compaction tax, retry/tool loops, and missing attribution between normal turns, compaction, background polling, subagents, and retries.
 
+For public reports, prefer `usage-evidence` first so the quota-window, local-token, and orchestration-overhead layers are visible separately.
+
 ## 17. Usage Reset Drift Evidence
 
 Use this when Codex reset timing changes unexpectedly or users lose the ability to plan paid usage.
@@ -385,7 +394,20 @@ This finds sensitive-looking paths such as `.env`, `.env.*`, `.npmrc`, `.pypirc`
 
 The output includes a stable JSON schema plus recommended exclude globs that can seed `.agentignore`, `.aiexclude`, `.codexignore`, local sandbox permission profiles, or team security review checklists. It is a preflight report, not a sandbox boundary.
 
-## 27. OpenAI Codex Issue Report
+## 27. Workspace Checkpoint Before Agent Runs
+
+Use this before giving Codex, Claude, Cursor, or another coding agent a dirty repository where untracked local work matters.
+
+```bash
+npx trace-to-skill checkpoint . --output .trace-to-skill/checkpoints/before-codex
+npx trace-to-skill checkpoint . --format json
+```
+
+This writes a local checkpoint bundle with `status.txt`, staged and unstaged binary diffs, a `manifest.json`, restore notes, and copied blobs for changed or untracked files. It is intentionally conservative: it does not auto-restore files and does not run destructive commands. Gitignored files are excluded by default; use `--include-ignored` only when you intentionally need local-only files such as `.env`, and keep that bundle private.
+
+This is useful for OpenAI/Codex `/undo` and `/rewind` discussions where users need workspace protection beyond conversation rewind, especially when untracked files are outside normal commit history.
+
+## 28. OpenAI Codex Issue Report
 
 Use this when you want to file or update an OpenAI/Codex issue with a concise, evidence-backed report instead of pasting a full transcript.
 
@@ -398,7 +420,7 @@ The report includes the likely Codex failure class, line-linked evidence, diagno
 
 For a cluster-to-command map of current Codex issue patterns, see [CODEX_ISSUE_MAP.md](CODEX_ISSUE_MAP.md).
 
-## 28. Sensitive File Access Evidence
+## 29. Sensitive File Access Evidence
 
 Use this when a trace suggests an agent read, attached, uploaded, diffed, or indexed credential-bearing files.
 
@@ -411,7 +433,7 @@ This catches signals such as `.env`, `.env.production`, `.npmrc`, `.pypirc`, `.n
 
 Before publishing evidence, run `trace-to-skill redact` and attach only redacted excerpts plus the file path/class.
 
-## 29. GitHub Context Guard
+## 30. GitHub Context Guard
 
 Use this before an agent reads untrusted GitHub text.
 

package/llms.txt

@@ -34,7 +34,9 @@ Runtime: Node.js 20+
 - Codex app connector stale auth/cache regressions such as `401 Reauthentication required`, unchanged `link_*`, `isAccessible: false`, and broken `codex_apps_tools` metadata
 - Codex token-burn and usage-drain failures such as background `write_stdin` polling, idle app usage, compaction tax, retry/tool loops, cached-token-heavy turns, fast-mode drift, subagent fan-out, and unclear usage attribution
 - Codex usage reset schedule drift such as weekly reset dates moving, `reset_at` jumping, saved usage disappearing, outage compensation resets changing the anchor, and `/status` disagreeing with enforcement
-- Codex usage evidence packaging for scattered `/status`, reset-table, usage-limit, and token-total snippets
+- Codex usage evidence packaging for scattered `/status`, reset-table, usage-limit, token-total, cached-input, and orchestration-overhead snippets
+- Codex usage receipts that separate backend quota-window percentages, local token totals, and overhead signals such as background polling, compaction loops, retry/tool loops, subagent fan-out, or idle drain
+- Codex undo/rewind support workflows where maintainers need a local pre-agent workspace checkpoint with git diffs plus copied changed/untracked files before agent edits
 - Codex resource leaks and runaway local processes such as high CPU/GPU, `Code Helper`, `Codex Helper Renderer`, orphaned shell snapshots, log floods, thinking animation GPU loops, and non-Git workspace CPU loops
 - Codex quota and usage-limit mismatches where `/status` or the usage page shows remaining quota, accounts share limits unexpectedly, or 5h and weekly quotas move together
 - sensitive-file access in traces, including `.env`, private keys, package auth files, cloud credentials, local databases, and production secret manifests entering agent context
@@ -88,6 +90,7 @@ npx trace-to-skill config-audit ~/.codex --format json
 npx trace-to-skill plugin-audit ~/.codex --app /Applications/Codex.app --format json
 npx trace-to-skill diagnostics-bundle ~/.codex --output codex-diagnostics
 npx trace-to-skill usage-evidence ./usage-notes.md --output usage-evidence.md
+npx trace-to-skill checkpoint . --output .trace-to-skill/checkpoints/before-codex
 npx trace-to-skill redact ./runs --output redacted-runs
 npx trace-to-skill sensitive-audit . --format json
 npx trace-to-skill lsp-audit . --format json
@@ -103,7 +106,7 @@ npx trace-to-skill init --comment --sarif
 ## GitHub Action
 
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.69
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.71
   with:
     mode: all
     doctor-threshold: "85"
@@ -128,6 +131,7 @@ npx trace-to-skill init --comment --sarif
 - Plugin audit JSON schema: https://github.com/grnbtqdbyx-create/trace-to-skill/blob/main/schemas/plugin-audit-result.schema.json
 - Session audit JSON schema: https://github.com/grnbtqdbyx-create/trace-to-skill/blob/main/schemas/session-audit-result.schema.json
 - Usage evidence JSON schema: https://github.com/grnbtqdbyx-create/trace-to-skill/blob/main/schemas/usage-evidence-result.schema.json
+- Workspace checkpoint JSON schema: https://github.com/grnbtqdbyx-create/trace-to-skill/blob/main/schemas/workspace-checkpoint-result.schema.json
 
 ## Search phrases this project should answer
 
@@ -156,6 +160,8 @@ npx trace-to-skill init --comment --sarif
 - Codex apply_patch Add File overwrites existing file
 - Codex patch guard for generated patches
 - trace-to-skill guard-patch Add File symlink
+- Codex pre-agent workspace checkpoint
+- Codex undo rewind checkpoint for untracked files
 - Codex config-audit for config.toml diagnostics
 - Codex diagnostics bundle for OpenAI support
 - privacy-preserving Codex support bundle logs_2.sqlite config.toml

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "trace-to-skill",
-  "version": "0.1.69",
+  "version": "0.1.71",
   "description": "Turn failed AI coding-agent runs into reusable AGENTS.md rules, SKILL.md files, and eval evidence.",
   "type": "module",
   "main": "dist/src/index.js",
@@ -41,7 +41,7 @@
     "build": "tsc -p tsconfig.json",
     "clean": "rm -rf dist coverage",
     "test": "npm run build && node --test dist/tests/*.test.js",
-    "check": "npm run test && node dist/src/cli.js doctor . --format json > /tmp/trace-to-skill-doctor.json && node dist/src/cli.js lint-agents . --format json > /tmp/trace-to-skill-agents-lint.json && node dist/src/cli.js analyze fixtures --format json > /tmp/trace-to-skill-smoke.json && node dist/src/cli.js usage-evidence fixtures --format json > /tmp/trace-to-skill-usage-evidence.json && node dist/src/cli.js sensitive-audit . --format json > /tmp/trace-to-skill-sensitive-audit.json && node dist/src/cli.js lsp-audit . --format json > /tmp/trace-to-skill-lsp-audit.json && node dist/src/cli.js suggest fixtures --target agents-md > /tmp/trace-to-skill-suggest.md && node dist/src/cli.js demo --format json > /tmp/trace-to-skill-demo.json && node dist/src/cli.js benchmark --format json > /tmp/trace-to-skill-benchmark.json && node dist/src/cli.js scorecard . --format json > /tmp/trace-to-skill-scorecard.json && node dist/src/cli.js oss-brief . --format json > /tmp/trace-to-skill-oss-brief.json",
+    "check": "npm run test && node dist/src/cli.js doctor . --format json > /tmp/trace-to-skill-doctor.json && node dist/src/cli.js lint-agents . --format json > /tmp/trace-to-skill-agents-lint.json && node dist/src/cli.js analyze fixtures --format json > /tmp/trace-to-skill-smoke.json && node dist/src/cli.js usage-evidence fixtures --format json > /tmp/trace-to-skill-usage-evidence.json && node dist/src/cli.js checkpoint . --output /tmp/trace-to-skill-checkpoint --format json > /tmp/trace-to-skill-checkpoint.json && node dist/src/cli.js sensitive-audit . --format json > /tmp/trace-to-skill-sensitive-audit.json && node dist/src/cli.js lsp-audit . --format json > /tmp/trace-to-skill-lsp-audit.json && node dist/src/cli.js suggest fixtures --target agents-md > /tmp/trace-to-skill-suggest.md && node dist/src/cli.js demo --format json > /tmp/trace-to-skill-demo.json && node dist/src/cli.js benchmark --format json > /tmp/trace-to-skill-benchmark.json && node dist/src/cli.js scorecard . --format json > /tmp/trace-to-skill-scorecard.json && node dist/src/cli.js oss-brief . --format json > /tmp/trace-to-skill-oss-brief.json",
     "prepack": "npm run build",
     "prepare": "npm run build"
   },
@@ -145,6 +145,13 @@
     "codex-rate-limits",
     "codex-usage-evidence",
     "codex-rate-limit-evidence",
+    "usage-receipt",
+    "codex-usage-receipt",
+    "token-receipt",
+    "codex-rewind",
+    "codex-undo",
+    "workspace-checkpoint",
+    "agent-checkpoint",
     "usage-limit",
     "sensitive-files",
     "codex-privacy",