trace-to-skill 0.1.65 → 0.1.67

package/README.md

@@ -55,7 +55,7 @@ Use it when you need to:
 - **Protect agent context:** run `trace-to-skill guard-github-event "$GITHUB_EVENT_PATH"` before feeding issue, PR, comment, discussion, check-run, or commit text into an agent.
 - **Prevent unsafe patch overwrites:** run `trace-to-skill guard-patch ./change.patch --root .` before applying generated patches so `*** Add File` cannot silently replace an existing file or symlink target.
 - **Audit local Codex session history:** run `trace-to-skill session-audit ~/.codex --format json` to summarize rollout JSONL sizes, huge lines, parse errors, state files, and short `session_index.jsonl` evidence without publishing private transcripts.
-- **Audit Codex config drift:** run `trace-to-skill config-audit ~/.codex --format json` to summarize legacy profile config, model pins, sandbox/approval posture, Windows elevated sandbox mode, missing permission profiles, plugin cache drift, and MCP approval sprawl.
+- **Audit Codex config drift:** run `trace-to-skill config-audit ~/.codex --format json` to summarize legacy profile config, model pins, Speed/Fast service-tier persistence drift, sandbox/approval posture, Windows elevated sandbox mode, missing permission profiles, plugin cache drift, and MCP approval sprawl.
 - **Audit bundled plugin drift:** run `trace-to-skill plugin-audit ~/.codex --app /Applications/Codex.app --format json` to check Browser, Chrome, Computer Use, bundled marketplace, plugin cache, manifest, helper app, `CODEX_HOME`, and unsupported feature-flag drift without posting raw logs.
 - **Bundle Codex diagnostics safely:** run `trace-to-skill diagnostics-bundle ~/.codex --output codex-diagnostics` to create a metadata-only support folder with manifest, README, config, plugin, and session audit reports while excluding raw logs, SQLite state, raw config, and transcripts.
 - **Package Codex usage evidence:** run `trace-to-skill usage-evidence ./usage-notes.md --output usage-evidence.md` to turn `/status`, reset tables, usage-limit errors, and token totals into a redaction-aware report.
@@ -72,6 +72,7 @@ Use it when you need to:
 - **Diagnose stale connector auth/cache:** run `trace-to-skill codex-report ./runs` when Codex app connectors return `401 Reauthentication required`, keep the same `link_*`, report `isAccessible: false`, or survive restart/plugin reinstall/cache clearing.
 - **Explain missing MCP tools across Codex surfaces:** run `trace-to-skill codex-report ./runs` when MCP servers work in CLI or user-global config but are absent in VS Code, Desktop, WSL, or project-local sessions.
 - **Report terminal output and scrollback integrity failures:** run `trace-to-skill codex-report ./runs` when Codex terminal output disappears, gets overwritten, truncates numbered lines, snaps scrollback to the bottom, or only survives in logs/transcripts.
+- **Triage subagent lifecycle drift:** run `trace-to-skill codex-report ./runs` when completed or closed subagents stay visible, stale spawn edges remain open, child threads crowd the recent list, `agent thread limit reached` blocks new work, or compaction loses prior subagent IDs.
 - **Reduce approval friction:** run `trace-to-skill analyze ./runs` when `Approve for this session` is not remembered, repeated prompts push users toward Full Access, or trusted MCP tools like Playwright require dozens of approvals.
 - **Diagnose sandbox blockers:** run `trace-to-skill analyze ./runs` on Codex traces that fail with sandbox setup refresh, `os error 740`, ACL, ownership, or approval-mode permission errors.
 - **Debug Codex auth/connectivity:** run `trace-to-skill analyze ./runs` on logs with `token_exchange_failed`, `auth.openai.com/oauth/token`, Cloudflare challenge, proxy/CA, IPv6, or stream disconnect symptoms.
@@ -109,7 +110,7 @@ Open-source maintainers do not need more AI-generated noise. They need agents th
 - Did an `apply_patch` create operation actually overwrite an existing file or symlink target?
 - Can a generated patch be guarded before it touches the workspace?
 - Which local Codex rollout JSONL or `session_index.jsonl` files make `codex resume` or Desktop history sluggish?
-- Which `config.toml` setting explains a sandbox, approval, plugin, model, or Preferences save regression?
+- Which `config.toml` or `.codex-global-state.json` setting explains a sandbox, approval, plugin, model, Speed/Fast, or Preferences save regression?
 - Which bundled plugin/cache/marketplace/helper-app mismatch explains a Browser, Chrome, Computer Use, or MCP runtime failure?
 - Can I attach one safe diagnostics folder to OpenAI without posting raw `config.toml`, SQLite state, local logs, or transcripts?
 - Did Codex sandbox setup or workspace permissions block every tool call?
@@ -124,6 +125,8 @@ Open-source maintainers do not need more AI-generated noise. They need agents th
 - Did a Codex app connector keep stale `link_*` or `isAccessible: false` metadata after `401 Reauthentication required`, restart, plugin reinstall, or cache regeneration?
 - Did MCP servers work in Codex CLI, `~/.codex/config.toml`, or a new conversation, but disappear from VS Code, Desktop, WSL, project `.codex/config.toml`, or an older session?
 - Did Codex terminal scrollback, streamed output, or transcript rendering drop, overwrite, truncate, duplicate, or hide evidence lines that still exist in raw logs?
+- Did completed, closed, interrupted, or stale subagents diverge between the Desktop UI, live registry, `thread_spawn_edges`, spawn quota, recent-list/sidebar, and parent-agent discoverability?
+- Did Codex App reset Speed from Fast to Standard after restart even though `service_tier = "fast"` or `default-service-tier = "priority"` was still present?
 - Did repeated approval prompts make a safer scoped mode unusable or require huge per-tool MCP approval configs?
 - Can the failure be reported to OpenAI with line-linked evidence, redaction notes, and the exact diagnostics maintainers need?
 - Can we produce an application-ready OpenAI OSS brief from the repo's actual license, distribution, readiness, and benchmark state?
@@ -204,6 +207,7 @@ Trace analysis detects run-level failures:
 | Codex remote control | Mobile or remote sessions route through stale listeners, stale enrollment, or incomplete helper bundles |
 | Codex MCP discovery mismatch | MCP works in CLI or one config scope but disappears in VS Code, Desktop, WSL, project config, or an older session |
 | Codex terminal output integrity | Terminal scrollback, streamed output, or transcript rendering drops, overwrites, truncates, duplicates, or hides lines that raw logs still contain |
+| Codex subagent lifecycle | Completed, closed, stale, or interrupted subagents diverge across UI, registry, persisted spawn edges, quota, recent list, or parent discoverability |
 | Codex MCP runtime | MCP tools are configured but approval, namespace routing, unsupported callable names, or stdio transport fail at runtime |
 | Codex plugin runtime | Browser, Computer Use, Chrome, connectors, or bundled plugins are advertised but fail because helper paths, plugin-list schemas, or cache state drift |
 | Codex file tree UI | Desktop file tree, floating file panel, or file preview cannot be revealed, refreshes stale entries, or loses workspace navigation |
@@ -251,6 +255,7 @@ trace-to-skill demo deeplink-launch
 trace-to-skill demo connector-auth-cache
 trace-to-skill demo mcp-discovery-mismatch
 trace-to-skill demo terminal-output-integrity
+trace-to-skill demo subagent-lifecycle
 trace-to-skill demo patch-overwrite
 trace-to-skill guard-patch ./change.patch --root .
 trace-to-skill session-audit ~/.codex --format json
@@ -414,7 +419,7 @@ trace-to-skill compare --before ./runs/before --after ./runs/after
 
 JSONL traces are normalized by extracting common fields such as `message`, `content`, `text`, `output`, and `error`. Codex-style JSONL traces with `response_item`, `function_call`, `function_call_output`, and `event_msg` payloads are normalized into readable evidence lines.
 
-MCP configs with `mcpServers`, `.mcp.json`, or project-local `.codex/config.toml` are parsed for capability hints such as filesystem, shell, browser, network, database, container, and secret-bearing environment variables. `lint-agents` also checks static startup inputs such as `command`, `cwd`, env placeholders, unresolved `$VARS`, `${CLAUDE_PLUGIN_ROOT}`-style plugin placeholders, local stdio commands without explicit `cwd`, and the common JSON `mcp_servers` / `mcpServers` casing mismatch. Codex config hygiene checks catch deprecated `[features].codex_hooks`, missing `default_permissions` profile definitions, and machine-local `projects.* trusted_level` metadata in synced config files.
+MCP configs with `mcpServers`, `.mcp.json`, or project-local `.codex/config.toml` are parsed for capability hints such as filesystem, shell, browser, network, database, container, and secret-bearing environment variables. `lint-agents` also checks static startup inputs such as `command`, `cwd`, env placeholders, unresolved `$VARS`, `${CLAUDE_PLUGIN_ROOT}`-style plugin placeholders, local stdio commands without explicit `cwd`, and the common JSON `mcp_servers` / `mcpServers` casing mismatch. Codex config hygiene checks catch deprecated `[features].codex_hooks`, missing `default_permissions` profile definitions, machine-local `projects.* trusted_level` metadata in synced config files, and Speed/Fast persistence drift between `config.toml` and `.codex-global-state.json`.
 
 Instruction files such as `AGENTS.md`, `CLAUDE.md`, `GEMINI.md`, `.cursor/rules`, and `.github/copilot-instructions.md` are checked for obvious contradictions in validation commands, test requirements, destructive-command approval rules, invalid UTF-8, missing include targets, and nested `AGENTS.md` files that may not be loaded automatically.
 
@@ -465,7 +470,7 @@ jobs:
       issues: write
     steps:
       - uses: actions/checkout@v5
-      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.65
+      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.67
         with:
           mode: all
           doctor-threshold: "85"
@@ -514,7 +519,7 @@ Composite action usage:
 
 ```yaml
 - id: trace-to-skill
-  uses: grnbtqdbyx-create/trace-to-skill@v0.1.65
+  uses: grnbtqdbyx-create/trace-to-skill@v0.1.67
   with:
     mode: all
     doctor-threshold: "85"
@@ -556,7 +561,7 @@ Action outputs:
 
 By default, generated reports are also appended to the GitHub Actions Job Summary. Set `job-summary: "false"` to disable that UI output.
 
-Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.65` executes that release's checked-out source instead of pulling the default branch at runtime.
+Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.67` executes that release's checked-out source instead of pulling the default branch at runtime.
 
 ## Codex Skill
 

package/dist/src/benchmark.js

@@ -107,6 +107,12 @@ const BENCHMARK_CASES = [
         fixture: "fixtures/codex-terminal-output-integrity.md",
         expectedKinds: ["codex_terminal_output_integrity", "weak_evidence"]
     },
+    {
+        id: "codex-subagent-lifecycle",
+        title: "Codex subagent lifecycle and state reconciliation failure",
+        fixture: "fixtures/codex-subagent-lifecycle.md",
+        expectedKinds: ["codex_subagent_lifecycle", "weak_evidence"]
+    },
     {
         id: "quota-mismatch",
         title: "Codex quota mismatch",

package/dist/src/benchmark.js.map

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+{"version":3,"file":"benchmark.js","sourceRoot":"","sources":["../../src/benchmark.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAE,cAAc,EAAE,MAAM,cAAc,CAAC;AA8B9C,MAAM,eAAe,GAA8B;IACjD;QACE,EAAE,EAAE,qBAAqB;QACzB,KAAK,EAAE,2BAA2B;QAClC,OAAO,EAAE,sBAAsB;QAC/B,aAAa,EAAE,EAAE;QACjB,YAAY,EAAE,IAAI;KACnB;IACD;QACE,EAAE,EAAE,iBAAiB;QACrB,KAAK,EAAE,yCAAyC;QAChD,OAAO,EAAE,wBAAwB;QACjC,aAAa,EAAE,CAAC,cAAc,EAAE,sBAAsB,EAAE,eAAe,EAAE,UAAU,EAAE,mBAAmB,CAAC;QACzG,eAAe,EAAE,IAAI;KACtB;IACD;QACE,EAAE,EAAE,aAAa;QACjB,KAAK,EAAE,4BAA4B;QACnC,OAAO,EAAE,8BAA8B;QACvC,aAAa,EAAE,CAAC,cAAc,EAAE,sBAAsB,EAAE,eAAe,CAAC;QACxE,eAAe,EAAE,IAAI;KACtB;IACD;QACE,EAAE,EAAE,sBAAsB;QAC1B,KAAK,EAAE,mCAAmC;QAC1C,OAAO,EAAE,kCAAkC;QAC3C,aAAa,EAAE,CAAC,sBAAsB,EAAE,oBAAoB,EAAE,eAAe,CAAC;KAC/E;IACD;QACE,EAAE,EAAE,oBAAoB;QACxB,KAAK,EAAE,kCAAkC;QACzC,OAAO,EAAE,gCAAgC;QACzC,aAAa,EAAE,CAAC,oBAAoB,EAAE,eAAe,CAAC;KACvD;IACD;QACE,EAAE,EAAE,yBAAyB;QAC7B,KAAK,EAAE,0CAA0C;QACjD,OAAO,EAAE,qCAAqC;QAC9C,aAAa,EAAE,CAAC,yBAAyB,EAAE,eAAe,CAAC;KAC5D;IACD;QACE,EAAE,EAAE,0BAA0B;QAC9B,KAAK,EAAE,4CAA4C;QACnD,OAAO,EAAE,sCAAsC;QAC/C,aAAa,EAAE,CAAC,0BAA0B,EAAE,eAAe,CAAC;KAC7D;IACD;QACE,EAAE,EAAE,qBAAqB;QACzB,KAAK,EAAE,gCAAgC;QACvC,OAAO,EAAE,iCAAiC;QAC1C,aAAa,EAAE,CAAC,qBAAqB,EAAE,eAAe,CAAC;KACxD;IACD;QACE,EAAE,EAAE,4BAA4B;QAChC,KAAK,EAAE,4DAA4D;QACnE,OAAO,EAAE,wCAAwC;QACjD,aAAa,EAAE,CAAC,4BAA4B,EAAE,eAAe,CAAC;KAC/D;IACD;QACE,EAAE,EAAE,uBAAuB;QAC3B,KAAK,EAAE,gEAAgE;QACvE,OAAO,EAAE,mCAAmC;QAC5C,aAAa,EAAE,CAAC,uBAAuB,EAAE,eAAe,CAAC;KAC1D;IACD;QACE,EAAE,EAAE,4BAA4B;QAChC,KAAK,EAAE,0DAA0D;QACjE,OAAO,EAAE,wCAAwC;QACjD,aAAa,EAAE,CAAC,4BAA4B,EAAE,eAAe,CAAC;KAC/D;IACD;QACE,EAAE,EAAE,yBAAyB;QAC7B,KAAK,EAAE,sDAAsD;QAC7D,OAAO,EAAE,qCAAqC;QAC9C,aAAa,EAAE,CAAC,yBAAyB,EAAE,oBAAoB,EAAE,eAAe,CAAC;KAClF;IACD;QACE,EAAE,EAAE,oBAAoB;QACxB,KAAK,EAAE,kCAAkC;QACzC,OAAO,EAAE,gCAAgC;QACzC,aAAa,EAAE,CAAC,oBAAoB,EAAE,eAAe,CAAC;KACvD;IACD;QACE,EAAE,EAAE,2BAA2B;QAC/B,KAAK,EAAE,oDAAoD;QAC3D,OAAO,EAAE,uCAAuC;QAChD,aAAa,EAAE,CAAC,2BAA2B,EAAE,oBAAoB,EAAE,sBAAsB,EAAE,eAAe,CAAC;KAC5G;IACD;QACE,EAAE,EAAE,oBAAoB;QACxB,KAAK,EAAE,qCAAqC;QAC5C,OAAO,EAAE,gCAAgC;QACzC,aAAa,EAAE,CAAC,oBAAoB,EAAE,eAAe,CAAC;KACvD;IACD;QACE,EAAE,EAAE,sBAAsB;QAC1B,KAAK,EAAE,2CAA2C;QAClD,OAAO,EAAE,kCAAkC;QAC3C,aAAa,EAAE,CAAC,sBAAsB,EAAE,eAAe,CAAC;KACzD;IACD;QACE,EAAE,EAAE,iCAAiC;QACrC,KAAK,EAAE,wDAAwD;QAC/D,OAAO,EAAE,6CAA6C;QACtD,aAAa,EAAE,CAAC,iCAAiC,EAAE,eAAe,CAAC;KACpE;IACD;QACE,EAAE,EAAE,0BAA0B;QAC9B,KAAK,EAAE,2DAA2D;QAClE,OAAO,EAAE,sCAAsC;QAC/C,aAAa,EAAE,CAAC,0BAA0B,EAAE,eAAe,CAAC;KAC7D;IACD;QACE,EAAE,EAAE,gBAAgB;QACpB,KAAK,EAAE,sBAAsB;QAC7B,OAAO,EAAE,4BAA4B;QACrC,aAAa,EAAE,CAAC,gBAAgB,EAAE,eAAe,CAAC;KACnD;IACD;QACE,EAAE,EAAE,UAAU;QACd,KAAK,EAAE,iCAAiC;QACxC,OAAO,EAAE,wBAAwB;QACjC,aAAa,EAAE,CAAC,iBAAiB,EAAE,UAAU,CAAC;QAC9C,eAAe,EAAE,IAAI;KACtB;IACD;QACE,EAAE,EAAE,uBAAuB;QAC3B,KAAK,EAAE,wCAAwC;QAC/C,OAAO,EAAE,mCAAmC;QAC5C,aAAa,EAAE,CAAC,uBAAuB,EAAE,eAAe,CAAC;KAC1D;IACD;QACE,EAAE,EAAE,mBAAmB;QACvB,KAAK,EAAE,2BAA2B;QAClC,OAAO,EAAE,+BAA+B;QACxC,aAAa,EAAE,CAAC,mBAAmB,EAAE,eAAe,CAAC;KACtD;IACD;QACE,EAAE,EAAE,8BAA8B;QAClC,KAAK,EAAE,+CAA+C;QACtD,OAAO,EAAE,0CAA0C;QACnD,aAAa,EAAE,CAAC,8BAA8B,EAAE,eAAe,CAAC;KACjE;IACD;QACE,EAAE,EAAE,sBAAsB;QAC1B,KAAK,EAAE,qDAAqD;QAC5D,OAAO,EAAE,kCAAkC;QAC3C,aAAa,EAAE,CAAC,sBAAsB,EAAE,eAAe,CAAC;KACzD;IACD;QACE,EAAE,EAAE,oBAAoB;QACxB,KAAK,EAAE,qDAAqD;QAC5D,OAAO,EAAE,gCAAgC;QACzC,aAAa,EAAE,CAAC,oBAAoB,EAAE,eAAe,CAAC;KACvD;IACD;QACE,EAAE,EAAE,qBAAqB;QACzB,KAAK,EAAE,wCAAwC;QAC/C,OAAO,EAAE,iCAAiC;QAC1C,aAAa,EAAE,CAAC,qBAAqB,EAAE,eAAe,CAAC;KACxD;IACD;QACE,EAAE,EAAE,kBAAkB;QACtB,KAAK,EAAE,uCAAuC;QAC9C,OAAO,EAAE,8BAA8B;QACvC,aAAa,EAAE,CAAC,kBAAkB,EAAE,eAAe,CAAC;KACrD;IACD;QACE,EAAE,EAAE,qBAAqB;QACzB,KAAK,EAAE,yCAAyC;QAChD,OAAO,EAAE,iCAAiC;QAC1C,aAAa,EAAE,CAAC,qBAAqB,EAAE,eAAe,CAAC;KACxD;IACD;QACE,EAAE,EAAE,2BAA2B;QAC/B,KAAK,EAAE,gDAAgD;QACvD,OAAO,EAAE,uCAAuC;QAChD,aAAa,EAAE,CAAC,2BAA2B,EAAE,eAAe,CAAC;KAC9D;IACD;QACE,EAAE,EAAE,6BAA6B;QACjC,KAAK,EAAE,6CAA6C;QACpD,OAAO,EAAE,yCAAyC;QAClD,aAAa,EAAE,CAAC,2BAA2B,EAAE,eAAe,CAAC;KAC9D;IACD;QACE,EAAE,EAAE,yBAAyB;QAC7B,KAAK,EAAE,kCAAkC;QACzC,OAAO,EAAE,qCAAqC;QAC9C,aAAa,EAAE,CAAC,yBAAyB,EAAE,eAAe,CAAC;KAC5D;IACD;QACE,EAAE,EAAE,kBAAkB;QACtB,KAAK,EAAE,uCAAuC;QAC9C,OAAO,EAAE,8BAA8B;QACvC,aAAa,EAAE,CAAC,kBAAkB,CAAC;QACnC,eAAe,EAAE,IAAI;KACtB;IACD;QACE,EAAE,EAAE,mBAAmB;QACvB,KAAK,EAAE,qCAAqC;QAC5C,OAAO,EAAE,4BAA4B;QACrC,aAAa,EAAE,CAAC,qBAAqB,CAAC;KACvC;CACF,CAAC;AAEF,MAAM,CAAC,KAAK,UAAU,YAAY;IAChC,MAAM,KAAK,GAA0B,EAAE,CAAC;IACxC,MAAM,IAAI,GAAG,WAAW,EAAE,CAAC;IAE3B,KAAK,MAAM,UAAU,IAAI,eAAe,EAAE,CAAC;QACzC,MAAM,MAAM,GAAG,MAAM,cAAc,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,UAAU,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QAC3E,MAAM,aAAa,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,GAAG,CAAC,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;QACjG,MAAM,gBAAgB,GAAG,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,QAAQ,KAAK,UAAU,CAAC,CAAC,MAAM,CAAC;QAErG,KAAK,CAAC,IAAI,CAAC;YACT,EAAE,EAA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package/dist/src/configAudit.d.ts

@@ -2,7 +2,7 @@ export type ConfigAuditStatus = "pass" | "warn" | "fail";
 export type ConfigAuditSeverity = "warning" | "error";
 export interface ConfigAuditFinding {
     severity: ConfigAuditSeverity;
-    kind: "missing_config" | "legacy_profile_config" | "model_pin" | "danger_full_access" | "windows_elevated_sandbox" | "default_permissions_missing" | "deprecated_codex_hooks" | "machine_local_project_state" | "plugin_cache_missing" | "mcp_approval_sprawl";
+    kind: "missing_config" | "legacy_profile_config" | "model_pin" | "danger_full_access" | "windows_elevated_sandbox" | "default_permissions_missing" | "deprecated_codex_hooks" | "machine_local_project_state" | "plugin_cache_missing" | "mcp_approval_sprawl" | "global_state_unreadable" | "service_tier_persistence_drift";
     line?: number;
     message: string;
 }
@@ -10,9 +10,11 @@ export interface ConfigAuditResult {
     generatedAt: string;
     target: string;
     configPath: string;
+    globalStatePath: string;
     status: ConfigAuditStatus;
     summary: {
         exists: boolean;
+        globalStateExists: boolean;
         sizeBytes: number;
         topLevelKeys: string[];
         sections: string[];
@@ -25,6 +27,10 @@ export interface ConfigAuditResult {
         sandboxMode?: string;
         windowsSandbox?: string;
         defaultPermissions?: string;
+        serviceTier?: string;
+        configDefaultServiceTier?: string;
+        globalDefaultServiceTier?: string | null;
+        globalHasUserChangedServiceTier?: boolean;
     };
     findings: ConfigAuditFinding[];
 }

package/dist/src/configAudit.js

@@ -4,20 +4,24 @@ import path from "node:path";
 export async function auditCodexConfig(target = "~/.codex") {
     const resolvedTarget = path.resolve(expandHome(target));
     const configPath = await resolveConfigPath(resolvedTarget);
+    const globalStatePath = path.join(path.dirname(configPath), ".codex-global-state.json");
     try {
         const content = await fs.readFile(configPath, "utf8");
         const fileStat = await fs.stat(configPath);
         const entries = parseTomlEntries(content);
-        const findings = await collectFindings(configPath, entries);
+        const globalState = await readGlobalState(globalStatePath);
+        const findings = await collectFindings(configPath, entries, globalState);
         const sections = entries.filter((entry) => entry.section && !entry.key).map((entry) => entry.section);
         const topLevelKeys = entries.filter((entry) => !entry.section && entry.key).map((entry) => entry.key);
         return {
             generatedAt: new Date().toISOString(),
             target: resolvedTarget,
             configPath,
+            globalStatePath,
             status: statusFor(findings),
             summary: {
                 exists: true,
+                globalStateExists: globalState.exists,
                 sizeBytes: fileStat.size,
                 topLevelKeys,
                 sections,
@@ -29,7 +33,11 @@ export async function auditCodexConfig(target = "~/.codex") {
                 approvalPolicy: stringValue(findAssignment(entries, undefined, "approval_policy")?.value),
                 sandboxMode: stringValue(findAssignment(entries, undefined, "sandbox_mode")?.value),
                 windowsSandbox: stringValue(findAssignment(entries, "windows", "sandbox")?.value),
-                defaultPermissions: stringValue(findAssignment(entries, undefined, "default_permissions")?.value)
+                defaultPermissions: stringValue(findAssignment(entries, undefined, "default_permissions")?.value),
+                serviceTier: stringValue(findAssignment(entries, undefined, "service_tier")?.value),
+                configDefaultServiceTier: stringValue(findAssignment(entries, undefined, "default-service-tier")?.value),
+                globalDefaultServiceTier: globalState.defaultServiceTier,
+                globalHasUserChangedServiceTier: globalState.hasUserChangedServiceTier
             },
             findings
         };
@@ -47,9 +55,11 @@ export async function auditCodexConfig(target = "~/.codex") {
             generatedAt: new Date().toISOString(),
             target: resolvedTarget,
             configPath,
+            globalStatePath,
             status: statusFor(findings),
             summary: {
                 exists: false,
+                globalStateExists: false,
                 sizeBytes: 0,
                 topLevelKeys: [],
                 sections: [],
@@ -69,7 +79,9 @@ export function renderConfigAuditMarkdown(result) {
         "",
         `Target: \`${result.target}\``,
         `Config: \`${result.configPath}\``,
+        `Global state: \`${result.globalStatePath}\``,
         `Exists: ${result.summary.exists ? "yes" : "no"}`,
+        `Global state exists: ${result.summary.globalStateExists ? "yes" : "no"}`,
         `Size: ${result.summary.sizeBytes} bytes`,
         `Top-level keys: ${result.summary.topLevelKeys.length > 0 ? result.summary.topLevelKeys.join(", ") : "none"}`,
         `Sections: ${result.summary.sections.length}`,
@@ -83,6 +95,10 @@ export function renderConfigAuditMarkdown(result) {
         `- sandbox_mode: ${formatValue(result.values.sandboxMode)}`,
         `- [windows].sandbox: ${formatValue(result.values.windowsSandbox)}`,
         `- default_permissions: ${formatValue(result.values.defaultPermissions)}`,
+        `- service_tier: ${formatValue(result.values.serviceTier)}`,
+        `- config default-service-tier: ${formatValue(result.values.configDefaultServiceTier)}`,
+        `- global default-service-tier: ${formatNullableValue(result.values.globalDefaultServiceTier)}`,
+        `- global has-user-changed-service-tier: ${formatBooleanValue(result.values.globalHasUserChangedServiceTier)}`,
         "",
         "## Findings",
         ""
@@ -97,7 +113,7 @@ export function renderConfigAuditMarkdown(result) {
         }
         lines.push("");
     }
-    lines.push("Suggested next step:", "", "- Attach this report to config, sandbox, approval, or plugin-runtime issues instead of pasting raw config with secrets.", "- Back up `~/.codex/config.toml` before manually changing sandbox, permission, model, MCP, or plugin settings.", "");
+    lines.push("Suggested next step:", "", "- Attach this report to config, sandbox, approval, or plugin-runtime issues instead of pasting raw config with secrets.", "- Back up `~/.codex/config.toml` and `.codex-global-state.json` before manually changing sandbox, permission, model, MCP, plugin, or Speed settings.", "");
     return lines.join("\n");
 }
 async function resolveConfigPath(target) {
@@ -114,15 +130,24 @@ async function resolveConfigPath(target) {
     }
     return target;
 }
-async function collectFindings(configPath, entries) {
+async function collectFindings(configPath, entries, globalState) {
     const findings = [];
     const model = findAssignment(entries, undefined, "model");
     const profile = findAssignment(entries, undefined, "profile");
     const sandboxMode = findAssignment(entries, undefined, "sandbox_mode");
     const windowsSandbox = findAssignment(entries, "windows", "sandbox");
     const defaultPermissions = findAssignment(entries, undefined, "default_permissions");
+    const serviceTier = findAssignment(entries, undefined, "service_tier");
+    const configDefaultServiceTier = findAssignment(entries, undefined, "default-service-tier");
     const permissionProfiles = collectPermissionProfiles(entries);
     const sections = entries.filter((entry) => entry.section && !entry.key).map((entry) => entry.section);
+    if (globalState.unreadable) {
+        findings.push({
+            severity: "warning",
+            kind: "global_state_unreadable",
+            message: `.codex-global-state.json could not be read: ${globalState.unreadable}`
+        });
+    }
     if (profile && typeof profile.value === "string") {
         findings.push({
             severity: "warning",
@@ -147,6 +172,19 @@ async function collectFindings(configPath, entries) {
             message: `model is pinned to "${model.value}"; include this in reports about update, routing, latency, or unavailable-model regressions.`
         });
     }
+    const requestedSpeedTier = normalizeServiceTier(stringValue(serviceTier?.value) ?? stringValue(configDefaultServiceTier?.value));
+    const persistedSpeedTier = normalizeServiceTier(globalState.defaultServiceTier);
+    if (globalState.exists &&
+        globalState.hasUserChangedServiceTier === true &&
+        requestedSpeedTier === "fast" &&
+        persistedSpeedTier !== "fast") {
+        findings.push({
+            severity: "warning",
+            kind: "service_tier_persistence_drift",
+            line: serviceTier?.line ?? configDefaultServiceTier?.line,
+            message: `config requests Fast via ${serviceTier ? "service_tier" : "default-service-tier"}, but .codex-global-state.json has default-service-tier ${formatRawStateValue(globalState.defaultServiceTier)} while has-user-changed-service-tier is true.`
+        });
+    }
     if (sandboxMode?.value === "danger-full-access") {
         findings.push({
             severity: "warning",
@@ -211,6 +249,29 @@ async function collectFindings(configPath, entries) {
     findings.push(...(await findMissingPluginCaches(configPath, entries)));
     return findings;
 }
+async function readGlobalState(globalStatePath) {
+    try {
+        const content = await fs.readFile(globalStatePath, "utf8");
+        const parsed = JSON.parse(content);
+        const atomState = objectValue(parsed["electron-persisted-atom-state"]);
+        const defaultServiceTier = firstDefined(nullableStringValue(atomState?.["default-service-tier"]), nullableStringValue(parsed["electron-persisted-atom-state.default-service-tier"]));
+        const hasUserChangedServiceTier = firstDefined(booleanValue(atomState?.["has-user-changed-service-tier"]), booleanValue(parsed["electron-persisted-atom-state.has-user-changed-service-tier"]));
+        return {
+            exists: true,
+            defaultServiceTier,
+            hasUserChangedServiceTier
+        };
+    }
+    catch (error) {
+        if (error.code === "ENOENT") {
+            return { exists: false };
+        }
+        return {
+            exists: true,
+            unreadable: error.message
+        };
+    }
+}
 async function findMissingPluginCaches(configPath, entries) {
     const codexHome = path.dirname(configPath);
     const findings = [];
@@ -335,6 +396,40 @@ function unquoteTomlPart(value) {
 function stringValue(value) {
     return typeof value === "string" ? value : undefined;
 }
+function nullableStringValue(value) {
+    if (typeof value === "string") {
+        return value;
+    }
+    if (value === null) {
+        return null;
+    }
+    return undefined;
+}
+function booleanValue(value) {
+    return typeof value === "boolean" ? value : undefined;
+}
+function objectValue(value) {
+    if (value && typeof value === "object" && !Array.isArray(value)) {
+        return value;
+    }
+    return undefined;
+}
+function firstDefined(...values) {
+    return values.find((value) => value !== undefined);
+}
+function normalizeServiceTier(value) {
+    if (!value) {
+        return value === null ? "standard" : undefined;
+    }
+    const normalized = value.toLowerCase();
+    if (normalized === "fast" || normalized === "priority") {
+        return "fast";
+    }
+    if (normalized === "standard" || normalized === "default" || normalized === "normal" || normalized === "flex") {
+        return "standard";
+    }
+    return undefined;
+}
 function statusFor(findings) {
     if (findings.some((finding) => finding.severity === "error")) {
         return "fail";
@@ -344,6 +439,21 @@ function statusFor(findings) {
 function formatValue(value) {
     return value ? `\`${value}\`` : "not set";
 }
+function formatNullableValue(value) {
+    if (typeof value === "string") {
+        return `\`${value}\``;
+    }
+    return value === null ? "`null`" : "not set";
+}
+function formatBooleanValue(value) {
+    return typeof value === "boolean" ? `\`${value ? "true" : "false"}\`` : "not set";
+}
+function formatRawStateValue(value) {
+    if (typeof value === "string") {
+        return `"${value}"`;
+    }
+    return value === null ? "null" : "unset";
+}
 async function pathExists(candidate) {
     try {
         await fs.access(candidate);

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package/dist/src/demo.js

@@ -63,6 +63,12 @@ const DEMO_SCENARIOS = [
         fixture: "fixtures/codex-terminal-output-integrity.md",
         description: "Terminal scrollback, streamed output, or transcript rendering drops, overwrites, truncates, or makes lines inaccessible."
     },
+    {
+        id: "subagent-lifecycle",
+        title: "Codex subagent lifecycle",
+        fixture: "fixtures/codex-subagent-lifecycle.md",
+        description: "Completed, closed, stale, or interrupted subagents diverge between UI, live registry, persisted state, quota, and parent discoverability."
+    },
     {
         id: "token-burn",
         title: "Codex token burn",
@@ -150,6 +156,7 @@ export function renderDemoMarkdown(result) {
         "trace-to-skill demo connector-auth-cache",
         "trace-to-skill demo mcp-discovery-mismatch",
         "trace-to-skill demo terminal-output-integrity",
+        "trace-to-skill demo subagent-lifecycle",
         "trace-to-skill demo file-tree-ui",
         "trace-to-skill demo usage-reset-drift",
         "```",
@@ -178,6 +185,7 @@ export function renderDemoScenarioList(scenarios = listDemoScenarios()) {
         "trace-to-skill demo connector-auth-cache",
         "trace-to-skill demo mcp-discovery-mismatch",
         "trace-to-skill demo terminal-output-integrity",
+        "trace-to-skill demo subagent-lifecycle",
         "trace-to-skill demo --list",
         "```",
         ""

package/dist/src/demo.js.map

@@ -1 +1 @@
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package/dist/src/rules.js

@@ -401,6 +401,29 @@ const RULES = [
         suggestedRule: "When reporting Codex terminal output or scrollback integrity failures, capture Codex CLI/app/extension version, OS, shell, terminal emulator and version, remote/WSL/SSH/tmux/Zellij state, model, whether streaming was active, exact scroll action, whether the viewport snapped to bottom, first missing or duplicated line id, raw log/transcript/transaction evidence showing the line still exists, terminal capture such as tmux capture-pane or Windows Terminal screenshot/video, reproduction script or numbered-line harness output, control run without Codex-specific escape/history insertion, terminal dimensions and scrollback settings, whether /resume or transcript mode recovers the content, and whether downgrade or another terminal changes behavior.",
         suggestedSkill: "codex-terminal-output-triage"
     },
+    {
+        kind: "codex_subagent_lifecycle",
+        severity: "high",
+        title: "Codex subagent lifecycle or state reconciliation failure",
+        why: "When completed, closed, stale, or interrupted subagents remain visible, keep quota slots, lose parent discoverability, or diverge between UI, live registry, and persisted spawn-edge state, long-running Codex sessions become hard to trust or recover.",
+        patterns: [
+            /\bsubagents?\b.{0,220}\b(stale|zombie|orphan(?:ed)?|refus(?:e|ing) to close|cannot be closed|can't be closed|accumulat(?:e|es|ing)|remain visible|still listed|visible count|Show \d+ more)\b/i,
+            /\b(completed|closed|shutdown|not_found|not found|already[- ]closed|terminal|inactive)\b.{0,220}\bsubagents?\b.{0,220}\b(still visible|remain(?:s)? listed|active list|Subagents panel|side panel|cache|UI|right rail|stale)\b/i,
+            /\b(close_agent|close route|readback|live close|agent controls)\b.{0,220}\b(not_found|not found|shutdown|completed|closed|pending_init|no live handle|no live agent|still visible|still listed|stale|UI|cache)\b/i,
+            /\b(thread_spawn_edges|spawn edges?|child_thread_id|parent_thread_id)\b.{0,220}\b(open|closed|stale|status|persisted|SQLite|state_5\.sqlite|spawn-edge)\b/i,
+            /\b(agent thread limit reached|agents\.max_threads|max_threads|spawn quota|quota slot|active spawn quota|counted against|per-session agent thread limit)\b/i,
+            /\b(completed|final|TurnComplete|terminal)\b.{0,220}\b(subagents?|agents?)\b.{0,220}\b(count(?:s|ed|ing)? against|consume|block|release|quota|thread limit|spawn)\b/i,
+            /\bsubagent child threads?\b.{0,220}\b(top-level recent conversations|recent conversation|sidebar|archived\s*=\s*0|unarchived|consume.*slots|page limit|recent-list)\b/i,
+            /\b(list_agents|\/agents|loaded\/list|thread\/loaded\/list)\b.{0,220}\b(live agents|closed agents|prior spawned|previously spawned|not available|cannot retrieve|no way to list|discoverable)\b/i,
+            /\bsubagents?\b.{0,220}\b(context compact(?:ed|ion)?|auto compact(?:ed|ion)?|compaction)\b.{0,220}\b(not aware|forgot|id was not available|cannot list|created a new subagent|forked the main session)\b/i,
+            /\bfork_context\b.{0,220}\b(unbiased review|forked our conversation|full conversation history|main session|bad call|do not fork|biased reviewer)\b/i,
+            /\b(main agent|parent thread|parent agent|root thread)\b.{0,220}\b(subagents?|child threads?|spawned sessions?)\b.{0,220}\b(no way to list|not aware|resume|discover|stale|closed|open edges?)\b/i,
+            /\bsubagents?\b.{0,220}\b(MCP startup interrupted|codex_apps|connection lifecycle|MCP connections?|connection pool|file descriptor|SSE connection|long session|5\+ hours)\b/i,
+            /\b(background work|background task|parallel-first|Down panel|task panel)\b.{0,220}\b(subagents?|terminals|nonblocking|lastProgressAt|halt_reason|stop_reason|budget_slice|worker id|receipt)\b/i
+        ],
+        suggestedRule: "When reporting Codex subagent lifecycle failures, capture Codex app/CLI/extension version, OS, surface, model, subscription/workspace, root thread id, subagent ids/nicknames/roles, spawn/close/list commands or UI actions, close_agent results, list_agents or /agents output, thread_spawn_edges status counts, agent registry or max_threads/quota evidence, recent-list/sidebar behavior, whether child threads are archived or shown as top-level conversations, last-progress/heartbeat or halt reason, MCP server state for subagents, compaction/resume timing, screenshot or redacted UI state, whether restart/reload/new thread clears it, and whether stale agents are UI-only or still block new spawns.",
+        suggestedSkill: "codex-subagent-lifecycle-triage"
+    },
     {
         kind: "codex_mcp_discovery_mismatch",
         severity: "high",
@@ -567,7 +590,7 @@ const RULES = [
             /\binsufficient tool messages following tool_calls message\b/i,
             /\btool_call_id\b.{0,160}\b(missing|unmatched|not followed|protocol|invalid_request_error|tool messages?)\b/i,
             /\bclose_agent\b.{0,180}\b(hang forever|waits? forever|never returns|thread never terminates|agent thread limit reached|registry slot|already closed)\b/i,
-            /\b(subagent|child thread|durable spawn edge|thread_spawn_edges)\b.{0,180}\b(closed|interrupted|terminated|registry slot|thread limit|hang forever|timeout)\b/i,
+            /\b(subagent|child thread|durable spawn edge|thread_spawn_edges)\b.{0,180}\b(registry slot|thread limit|agent thread limit reached|hang forever|never returns|timeout)\b/i,
             /\b(failed to revert changes|revert changes failed|undo button stopped working|could not undo|rollback failed)\b/i,
             /\b(Codex|agent|extension)\b.{0,180}\b(deleted|truncated|overwrote|destroyed|lost)\b.{0,160}\b(uncommitted code|existing file|codebase|file contents)\b/i,
             /\b(IDE-integrated diff|presenting changes|proposed changes|diff approval|show a diff|apply changes)\b.{0,180}\b(fail|missing|unsafe|rollback|revert|approval)\b/i