trace-to-skill 0.1.59 → 0.1.60

package/README.md

@@ -66,6 +66,7 @@ Use it when you need to:
 - **Triage stuck Codex sessions:** run `trace-to-skill analyze ./runs` to catch context compaction failures such as compact stream disconnects, `context_length_exceeded`, and schema mismatches.
 - **Catch latest-turn drift:** run `trace-to-skill analyze ./runs` when Codex answers an older prompt, repeats a previous response, forgets recent edits after compaction, or leaks raw tool payload text into chat.
 - **Measure Codex latency regressions:** run `trace-to-skill analyze ./runs` when GPT-5.5 Fast feels like Standard, simple tasks take 10-20+ minutes, thinking stalls, or search/read/compaction delays dominate the session.
+- **Report Thinking hangs:** run `trace-to-skill codex-report ./runs` when Codex accepts a turn or finishes local tools but stays on Thinking/Working with no streamed follow-up.
 - **Reduce approval friction:** run `trace-to-skill analyze ./runs` when `Approve for this session` is not remembered, repeated prompts push users toward Full Access, or trusted MCP tools like Playwright require dozens of approvals.
 - **Diagnose sandbox blockers:** run `trace-to-skill analyze ./runs` on Codex traces that fail with sandbox setup refresh, `os error 740`, ACL, ownership, or approval-mode permission errors.
 - **Debug Codex auth/connectivity:** run `trace-to-skill analyze ./runs` on logs with `token_exchange_failed`, `auth.openai.com/oauth/token`, Cloudflare challenge, proxy/CA, IPv6, or stream disconnect symptoms.
@@ -112,6 +113,7 @@ Open-source maintainers do not need more AI-generated noise. They need agents th
 - Did a long local Codex session become impossible to resume because history size, context compression, archived chat loading, or state migration broke?
 - Did usage burn come from useful model work, background polling, compaction/replay, retry loops, subagents, or idle app activity?
 - Did a model/runtime latency regression make Fast behave like Standard, stall before first output, or spend minutes in thinking, search, read, or compaction phases?
+- Did Codex accept a turn, finish local tools, or keep a Responses request open while the UI/CLI stayed on Thinking with no streamed follow-up?
 - Did repeated approval prompts make a safer scoped mode unusable or require huge per-tool MCP approval configs?
 - Can the failure be reported to OpenAI with line-linked evidence, redaction notes, and the exact diagnostics maintainers need?
 - Can we produce an application-ready OpenAI OSS brief from the repo's actual license, distribution, readiness, and benchmark state?
@@ -182,6 +184,7 @@ Trace analysis detects run-level failures:
 | Context compaction | Codex compact task fails, disconnects, loops, or hits `context_length_exceeded` |
 | Codex latest-turn drift | Long or compacted conversations answer stale prompts, redo old tasks, forget recent edits, or expose raw tool payloads |
 | Codex latency regression | Model/runtime routing, thinking stalls, search/read, or compaction latency makes simple tasks take minutes or hours |
+| Codex thinking hang | A turn, tool call, or Responses stream appears accepted but no assistant follow-up arrives while the UI stays on Thinking/Working |
 | Codex approval friction | Session approvals are not remembered, MCP tools reprompt repeatedly, or users fall back to unsafe full access |
 | Sandbox permission | Codex sandbox setup, approval mode, ACL, or workspace ownership blocks tool execution |
 | Codex connectivity | Auth token exchange, proxy/CA, IPv6, Cloudflare challenge, or ChatGPT transport errors block Codex |
@@ -227,6 +230,7 @@ Try a packaged public demo before collecting private traces:
 trace-to-skill demo
 trace-to-skill demo --list
 trace-to-skill demo latency-regression
+trace-to-skill demo thinking-hang
 trace-to-skill demo patch-overwrite
 trace-to-skill guard-patch ./change.patch --root .
 trace-to-skill session-audit ~/.codex --format json
@@ -441,7 +445,7 @@ jobs:
       issues: write
     steps:
       - uses: actions/checkout@v5
-      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.59
+      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.60
         with:
           mode: all
           doctor-threshold: "85"
@@ -490,7 +494,7 @@ Composite action usage:
 
 ```yaml
 - id: trace-to-skill
-  uses: grnbtqdbyx-create/trace-to-skill@v0.1.59
+  uses: grnbtqdbyx-create/trace-to-skill@v0.1.60
   with:
     mode: all
     doctor-threshold: "85"
@@ -532,7 +536,7 @@ Action outputs:
 
 By default, generated reports are also appended to the GitHub Actions Job Summary. Set `job-summary: "false"` to disable that UI output.
 
-Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.59` executes that release's checked-out source instead of pulling the default branch at runtime.
+Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.60` executes that release's checked-out source instead of pulling the default branch at runtime.
 
 ## Codex Skill
 

package/dist/src/benchmark.js

@@ -47,6 +47,12 @@ const BENCHMARK_CASES = [
         fixture: "fixtures/codex-latency-regression.md",
         expectedKinds: ["codex_latency_regression", "weak_evidence"]
     },
+    {
+        id: "codex-thinking-hang",
+        title: "Codex thinking and stream hang",
+        fixture: "fixtures/codex-thinking-hang.md",
+        expectedKinds: ["codex_thinking_hang", "weak_evidence"]
+    },
     {
         id: "codex-approval-friction",
         title: "Codex approval persistence and MCP approval friction",

package/dist/src/benchmark.js.map

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package/dist/src/demo.js

@@ -27,6 +27,12 @@ const DEMO_SCENARIOS = [
         fixture: "fixtures/codex-latency-regression.md",
         description: "Fast mode feels like Standard, with long thinking, search, read, or compaction stalls."
     },
+    {
+        id: "thinking-hang",
+        title: "Codex thinking and stream hang",
+        fixture: "fixtures/codex-thinking-hang.md",
+        description: "A turn or tool call completes, but the session stays on Thinking or Working with no streamed follow-up."
+    },
     {
         id: "token-burn",
         title: "Codex token burn",
@@ -108,6 +114,7 @@ export function renderDemoMarkdown(result) {
         "trace-to-skill demo remote-compact",
         "trace-to-skill demo windows-helper-path",
         "trace-to-skill demo patch-overwrite",
+        "trace-to-skill demo thinking-hang",
         "trace-to-skill demo file-tree-ui",
         "trace-to-skill demo usage-reset-drift",
         "```",
@@ -130,6 +137,7 @@ export function renderDemoScenarioList(scenarios = listDemoScenarios()) {
         "trace-to-skill demo windows-helper-path",
         "trace-to-skill demo patch-overwrite",
         "trace-to-skill demo latency-regression",
+        "trace-to-skill demo thinking-hang",
         "trace-to-skill demo --list",
         "```",
         ""

package/dist/src/demo.js.map

@@ -1 +1 @@
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package/dist/src/rules.js

@@ -188,6 +188,27 @@ const RULES = [
         suggestedRule: "When reporting Codex latency regressions, capture app/CLI/extension version, model and speed/reasoning settings, subscription/workspace, timestamps and per-step latency such as pre-first-token, thinking, tool, search, read, and compaction delays, task size and lines changed, local CPU/network evidence, feedback ids, before/after comparison, and whether the API path differs.",
         suggestedSkill: "codex-latency-regression-triage"
     },
+    {
+        kind: "codex_thinking_hang",
+        severity: "high",
+        title: "Codex thinking or stream hang",
+        why: "Codex can accept a turn, finish local tool calls, or keep a Responses request open while the UI/CLI remains on Thinking or Working with no streamed follow-up, making users interrupt healthy runs or lose long-session context.",
+        patterns: [
+            /\b(remain|remains|stays?|stuck|hangs?|hung)\b.{0,140}\b(Thinking|Working|running|spinner)\b.{0,220}\b(successful tool calls?|tool returned|no streamed follow-up|no follow-up|no response|responses request|\/responses request|post-tool|continuation)\b/i,
+            /\b(successful tool calls?|tool returned|tools? returned instantly|pwd|rg --files|function_call_output)\b.{0,220}\b(Thinking|Working|stuck|hangs?|hung|no next assistant action|no streamed follow-up|no visible output|silent)\b/i,
+            /\bpre[- ]?first[- ]?(?:token|output|event|response)\b.{0,180}\b(stall|hang|gap|silent|no visible|no streamed|many minutes|30 minutes|1,?838(?:\.5)? seconds)\b/i,
+            /\b(first response_item|first assistant|first reasoning|first visible assistant output)\b.{0,180}\b(after|gap|later|minutes|seconds)\b.{0,80}\b(30|1,?838|380|671|984|many)\b/i,
+            /\btask_started\b.{0,120}\bturn_context\b.{0,180}\b(first response_item|first assistant|reasoning)\b/i,
+            /\bmodel_client\.stream_responses_api\b.{0,220}\btime\.busy=\d+(?:\.\d+)?ms\b.{0,80}\btime\.idle=\d{3,}s\b/i,
+            /\bresponses_(?:http|websocket)\b.{0,220}\b(close time\.busy|time\.idle|stream remains silent|reconnecting|stream disconnected before completion|broken pipe)\b/i,
+            /\b(turn\/start|response_routed|captured turn route)\b.{0,220}\b(no assistant|no reasoning|no output|first response_item|stuck|Thinking)\b/i,
+            /\b(stop button|Ctrl\+C|interrupt|esc to interrupt|cannot stop|stop doesn't work|does not respond)\b.{0,180}\b(Thinking|Working|stuck|hang|turn|session)\b/i,
+            /\b(subagent|child thread|child lifecycle|waiting_on_child|child_requires_input|child_cleanup_pending)\b.{0,180}\b(Thinking|spinner|stuck|hang|parent|main thread)\b/i,
+            /\b(MCP|config\.toml|broken MCP|not responding)\b.{0,180}\b(Thinking|stuck|hang|minimal config|without any MCPs)\b/i
+        ],
+        suggestedRule: "When reporting Codex thinking hangs, capture app/CLI/extension version, OS, model and reasoning/speed settings, turn/thread id, prompt timestamp, `turn/start` or `task_started` timestamp, last successful tool-call output, first `response_item` or assistant timestamp if it eventually appears, transport (`responses_http` or websocket), `time.busy`/`time.idle` close metrics, reconnect or stream-disconnect lines, MCP/subagent state, whether stop/interrupt works, and whether a new thread or minimal config without MCPs recovers.",
+        suggestedSkill: "codex-thinking-hang-triage"
+    },
     {
         kind: "codex_approval_friction",
         severity: "high",
@@ -421,7 +442,7 @@ const RULES = [
             /\b(thread-stream-state-changed|worker_rpc_response_error|open-in-target not supported|local-environments is not supported|stable-metadata)\b.{0,180}\b(loop|repeated|thousands|high CPU|flood|no handler|error=\{\})\b/i,
             /\bthinking\b.{0,120}\b(animation|spinner|shimmer)\b.{0,160}\b(GPU|compositor|VSync|reduce motion|70%|100%|battery|power)\b/i,
             /\b(non[- ]?Git workspace|without \.git|not a Git repository|git repository root)\b.{0,180}\b(high CPU|renderer|Code Helper|runaway|CPU drops|CPU high)\b/i,
-            /\b(close_agent|subagent|child thread)\b.{0,180}\b(hang forever|never terminates|runaway|leak|stuck|CPU|process)\b/i
+            /\b(close_agent|subagent|child thread)\b.{0,180}\b(hang forever|never terminates|runaway|leak|CPU|process)\b/i
         ],
         suggestedRule: "When reporting Codex resource leaks, capture app/extension/CLI version, OS, IDE, thread type, exact process names and PIDs, CPU/GPU/RSS samples over time, whether the process is orphaned or PPID 1, log-loop signatures, workspace git-root state, visible animations/reduce-motion state, reproduction steps, and whether closing the panel/app, killing specific PIDs, git init, rollback, or restart clears the leak.",
         suggestedSkill: "codex-resource-leak-triage"
@@ -438,7 +459,7 @@ const RULES = [
             /\binsufficient tool messages following tool_calls message\b/i,
             /\btool_call_id\b.{0,160}\b(missing|unmatched|not followed|protocol|invalid_request_error|tool messages?)\b/i,
             /\bclose_agent\b.{0,180}\b(hang forever|waits? forever|never returns|thread never terminates|agent thread limit reached|registry slot|already closed)\b/i,
-            /\b(subagent|child thread|durable spawn edge|thread_spawn_edges)\b.{0,180}\b(closed|interrupted|terminated|registry slot|thread limit|hang|timeout)\b/i,
+            /\b(subagent|child thread|durable spawn edge|thread_spawn_edges)\b.{0,180}\b(closed|interrupted|terminated|registry slot|thread limit|hang forever|timeout)\b/i,
             /\b(failed to revert changes|revert changes failed|undo button stopped working|could not undo|rollback failed)\b/i,
             /\b(Codex|agent|extension)\b.{0,180}\b(deleted|truncated|overwrote|destroyed|lost)\b.{0,160}\b(uncommitted code|existing file|codebase|file contents)\b/i,
             /\b(IDE-integrated diff|presenting changes|proposed changes|diff approval|show a diff|apply changes)\b.{0,180}\b(fail|missing|unsafe|rollback|revert|approval)\b/i

package/dist/src/rules.js.map

@@ -1 +1 @@
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package/dist/src/types.d.ts

@@ -1,5 +1,5 @@
 export type Severity = "low" | "medium" | "high" | "critical";
-export type FindingKind = "premature_completion" | "tests_not_run" | "test_failure" | "ignored_instruction" | "hallucinated_file" | "over_editing" | "unsafe_command" | "secret_exposure" | "sensitive_file_access" | "hidden_unicode" | "prompt_injection" | "codex_remote_compact" | "context_compaction" | "codex_latest_turn_drift" | "codex_latency_regression" | "codex_approval_friction" | "sandbox_permission" | "codex_windows_helper_path" | "codex_connectivity" | "codex_remote_control" | "codex_mcp_runtime" | "codex_plugin_runtime" | "codex_file_tree_ui" | "codex_session_state" | "codex_token_burn" | "codex_resource_leak" | "codex_tool_call_integrity" | "codex_usage_reset_drift" | "quota_mismatch" | "mcp_risk" | "weak_evidence";
+export type FindingKind = "premature_completion" | "tests_not_run" | "test_failure" | "ignored_instruction" | "hallucinated_file" | "over_editing" | "unsafe_command" | "secret_exposure" | "sensitive_file_access" | "hidden_unicode" | "prompt_injection" | "codex_remote_compact" | "context_compaction" | "codex_latest_turn_drift" | "codex_latency_regression" | "codex_thinking_hang" | "codex_approval_friction" | "sandbox_permission" | "codex_windows_helper_path" | "codex_connectivity" | "codex_remote_control" | "codex_mcp_runtime" | "codex_plugin_runtime" | "codex_file_tree_ui" | "codex_session_state" | "codex_token_burn" | "codex_resource_leak" | "codex_tool_call_integrity" | "codex_usage_reset_drift" | "quota_mismatch" | "mcp_risk" | "weak_evidence";
 export interface TraceInput {
     path: string;
     content: string;

package/docs/BENCHMARK.md

@@ -13,6 +13,7 @@ This benchmark runs the public fixture pack that ships with the repository and p
 | Codex context compaction failure | `fixtures/context-compaction.md` | 59 | 3 | 0 | `codex_remote_compact`, `context_compaction`, `weak_evidence` | pass |
 | Codex latest-turn drift after compaction | `fixtures/codex-latest-turn-drift.md` | 59 | 3 | 0 | `codex_latest_turn_drift`, `premature_completion`, `weak_evidence` | pass |
 | Codex model and runtime latency regression | `fixtures/codex-latency-regression.md` | 75 | 2 | 0 | `codex_latency_regression`, `weak_evidence` | pass |
+| Codex thinking and stream hang | `fixtures/codex-thinking-hang.md` | 75 | 2 | 0 | `codex_thinking_hang`, `weak_evidence` | pass |
 | Codex approval persistence and MCP approval friction | `fixtures/codex-approval-friction.md` | 59 | 3 | 0 | `codex_approval_friction`, `sandbox_permission`, `weak_evidence` | pass |
 | Codex sandbox permission failure | `fixtures/sandbox-permission.md` | 59 | 3 | 0 | `codex_windows_helper_path`, `sandbox_permission`, `weak_evidence` | pass |
 | Codex Windows helper and bundled tool path failure | `fixtures/codex-windows-helper-path.md` | 43 | 4 | 0 | `codex_plugin_runtime`, `codex_windows_helper_path`, `sandbox_permission`, `weak_evidence` | pass |

package/docs/CODEX_ISSUE_MAP.md

@@ -26,6 +26,7 @@ npx trace-to-skill diagnostics-bundle ~/.codex --output codex-diagnostics
 | Resource leaks and runaway processes | high CPU/GPU/RAM, `Code Helper`, `Codex Helper Renderer`, orphaned `shell-snapshot`, `syspolicyd`, log floods, thinking animation GPU loops | `codex_resource_leak` | `trace-to-skill codex-report ./runs` |
 | Tool-call integrity and rollback failures | `apply_patch` overwrites an existing `Add File` target, unmatched `tool_call_id`, `close_agent` hangs, failed revert/undo, unsafe diff application | `codex_tool_call_integrity` | `trace-to-skill codex-report ./runs` or `trace-to-skill guard-patch ./change.patch --root .` |
 | Latency regressions | GPT-5.5 Fast feels like Standard, simple tasks take 10-20+ minutes, pre-first-token or thinking stalls, slow search/read/compaction, hours for small code changes | `codex_latency_regression` | `trace-to-skill codex-report ./runs` |
+| Thinking or stream hangs | accepted turn, completed local tool output, no streamed assistant follow-up, long gap before first `response_item`, `time.busy` milliseconds with `time.idle` hundreds of seconds, Stop/Ctrl+C cannot interrupt, subagent parent stuck | `codex_thinking_hang` | `trace-to-skill codex-report ./runs` or `trace-to-skill demo thinking-hang` |
 | Approval persistence and MCP approval friction | `Approve for this session` is not remembered, command approval cache misses, repeated file-change approvals, `approval_policy = "never"` still prompts for MCP tools, per-tool approval configs explode | `codex_approval_friction` | `trace-to-skill codex-report ./runs` |
 | Config and Preferences drift | legacy `profile` / `[profiles.*]`, `configVersionConflict`, Preferences `Unable to save`, stale model pin, missing `default_permissions` profile, enabled plugin cache missing, Windows elevated sandbox mode | `sandbox_permission`, `codex_plugin_runtime`, `codex_approval_friction` | `trace-to-skill config-audit ~/.codex --format json` |
 | Bundled plugin cache and marketplace drift | Computer Use unavailable, Browser/Chrome plugin unavailable, generated runtime marketplace omits bundled plugins, missing `.mcp.json` or `plugin.json`, helper app not installed, `CODEX_HOME` points at another runtime | `codex_plugin_runtime`, `codex_mcp_runtime` | `trace-to-skill plugin-audit ~/.codex --app /Applications/Codex.app --format json` |
@@ -58,6 +59,7 @@ npx trace-to-skill diagnostics-bundle ~/.codex --output codex-diagnostics
 - Include `session-audit` output, largest rollout JSONL sizes, largest line sizes, parse-error counts, `session_index.jsonl` line count, and state-file presence for resume/session-state failures.
 - Include `diagnostics-bundle` output when the issue spans config plus local session/history state, or when you need one metadata-only folder that excludes raw logs, SQLite databases, raw config, and transcripts.
 - Include pre-first-token, thinking, tool, search, read, and compaction timings plus model/speed settings for latency regressions.
+- Include `turn/start`, `task_started`, last successful tool output, first `response_item` timestamp, `responses_http` or websocket evidence, `time.busy` / `time.idle`, MCP/subagent state, stop/interrupt behavior, and minimal-config recovery evidence for Thinking hangs.
 - Include selected approval scope, displayed vs executed command, MCP server/tool names, visible args, repeated prompt count, and config snippets for approval-friction reports.
 - Include `config-audit` output for Preferences/config, sandbox, model-pin, MCP approval, and plugin-cache reports.
 - Include `plugin-audit` output, plugin name/version, cache path, helper path, manifest path, runtime marketplace, app-bundle marketplace, native pipe env vars, settings/plugin-list errors, and restart behavior for plugin runtime failures.

package/docs/DEMO.md

@@ -1,10 +1,10 @@
 # trace-to-skill Demo
 
-Scenario: **Codex apply_patch overwrite safety**
+Scenario: **Codex thinking and stream hang**
 
-`apply_patch` accepts `*** Add File` for an existing path, turning a create operation into a silent overwrite.
+A turn or tool call completes, but the session stays on Thinking or Working with no streamed follow-up.
 
-Fixture: `fixtures/codex-apply-patch-overwrite.md`
+Fixture: `fixtures/codex-thinking-hang.md`
 
 This is a packaged public fixture, so you can try the project without collecting a private trace first.
 
@@ -14,7 +14,7 @@ This is a packaged public fixture, so you can try the project without collecting
 
 Score: **75/100**
 
-Likely failure class: **Codex tool-call integrity or rollback failure (codex_tool_call_integrity, high)**
+Likely failure class: **Codex thinking or stream hang (codex_thinking_hang, high)**
 
 Agent workflow needs clearer verification, instruction, or security hardening before broad reuse.
 
@@ -23,20 +23,25 @@ Agent workflow needs clearer verification, instruction, or security hardening be
 ```md
 ### What happened?
 
-trace-to-skill detected Codex tool-call integrity or rollback failure (codex_tool_call_integrity). Patch, rollback, subagent, and protocol-level tool-call failures can silently overwrite files, strand threads, or make recovery actions fail unless reports preserve exact tool inputs, tool results, durable state, and recovery evidence.
+trace-to-skill detected Codex thinking or stream hang (codex_thinking_hang). Codex can accept a turn, finish local tool calls, or keep a Responses request open while the UI/CLI remains on Thinking or Working with no streamed follow-up, making users interrupt healthy runs or lose long-session context.
 
 ### Detected failure class
 
-- codex_tool_call_integrity: Codex tool-call integrity or rollback failure (high)
+- codex_thinking_hang: Codex thinking or stream hang (high)
 
 ### Evidence
 
-#### Codex tool-call integrity or rollback failure
-- fixtures/codex-apply-patch-overwrite.md:13 - apply_patch accepted `*** Add File` for an existing file and silently caused a destructive overwrite instead of failing.
+#### Codex thinking or stream hang
+- fixtures/codex-thinking-hang.md:12 - - Codex Desktop can remain in Thinking after successful tool calls with no streamed follow-up or a hung /responses request.
+- fixtures/codex-thinking-hang.md:13 - - The tools returned instantly (`pwd` and `rg --files`), then the app sat for minutes with no next assistant action until interrupt.
+- fixtures/codex-thinking-hang.md:16 - - The first response_item type=reasoning appeared only after a 1,838.5 second gap.
+- fixtures/codex-thinking-hang.md:17 - - Another report showed `model_client.stream_responses_api{transport="responses_http" api.path="responses"}: close time.busy=51.5ms time.idle=380s`.
+- fixtures/codex-thinking-hang.md:20 - - In subagent runs, the parent main thread stays stuck thinking while a child thread remains active, so the UI needs `waiting_on_child`, `child_requires_input`, or `child_cleanup_pending`.
+- fixtures/codex-thinking-hang.md:21 - - One workaround was a minimal `config.toml` without MCPs because a broken MCP that was not responding kept the session stuck on Thinking.
 
 ### Diagnostics to attach
 
-- When reporting Codex tool-call integrity failures, capture the exact tool input and output, app/CLI/extension version, OS/IDE, workspace git state, affected file path and whether it already existed or was a symlink, diff before/after, tool_call_id sequence, durable thread state for subagents, rollback/revert attempts, and whether a clean repo reproduction fails the same way.
+- When reporting Codex thinking hangs, capture app/CLI/extension version, OS, model and reasoning/speed settings, turn/thread id, prompt timestamp, `turn/start` or `task_started` timestamp, last successful tool-call output, first `response_item` or assistant timestamp if it eventually appears, transport (`responses_http` or websocket), `time.busy`/`time.idle` close metrics, reconnect or stream-disconnect lines, MCP/subagent state, whether stop/interrupt works, and whether a new thread or minimal config without MCPs recovers.
 
 ### Privacy
 
@@ -45,18 +50,24 @@ trace-to-skill detected Codex tool-call integrity or rollback failure (codex_too
 
 ## Findings
 
-### 1. Codex tool-call integrity or rollback failure
+### 1. Codex thinking or stream hang
 
 Severity: **high**
 
-Patch, rollback, subagent, and protocol-level tool-call failures can silently overwrite files, strand threads, or make recovery actions fail unless reports preserve exact tool inputs, tool results, durable state, and recovery evidence.
+Codex can accept a turn, finish local tool calls, or keep a Responses request open while the UI/CLI remains on Thinking or Working with no streamed follow-up, making users interrupt healthy runs or lose long-session context.
 
 Evidence:
-- `fixtures/codex-apply-patch-overwrite.md:13` apply_patch accepted `*** Add File` for an existing file and silently caused a destructive overwrite instead of failing.
+- `fixtures/codex-thinking-hang.md:12` - Codex Desktop can remain in Thinking after successful tool calls with no streamed follow-up or a hung /responses request.
+- `fixtures/codex-thinking-hang.md:13` - The tools returned instantly (`pwd` and `rg --files`), then the app sat for minutes with no next assistant action until interrupt.
+- `fixtures/codex-thinking-hang.md:16` - The first response_item type=reasoning appeared only after a 1,838.5 second gap.
+- `fixtures/codex-thinking-hang.md:17` - Another report showed `model_client.stream_responses_api{transport="responses_http" api.path="responses"}: close time.busy=51.5ms time.idle=380s`.
+- `fixtures/codex-thinking-hang.md:20` - In subagent runs, the parent main thread stays stuck thinking while a child thread remains active, so the UI needs `waiting_on_child`, `child_requires_input`, or `child_cleanup_pending`.
+- `fixtures/codex-thinking-hang.md:21` - One workaround was a minimal `config.toml` without MCPs because a broken MCP that was not responding kept the session stuck on Thinking.
+- `fixtures/codex-thinking-hang.md:32` - MCP and subagent state, especially whether a minimal config without MCPs fixes the hang
 
 Suggested rule:
 
-> When reporting Codex tool-call integrity failures, capture the exact tool input and output, app/CLI/extension version, OS/IDE, workspace git state, affected file path and whether it already existed or was a symlink, diff before/after, tool_call_id sequence, durable thread state for subagents, rollback/revert attempts, and whether a clean repo reproduction fails the same way.
+> When reporting Codex thinking hangs, capture app/CLI/extension version, OS, model and reasoning/speed settings, turn/thread id, prompt timestamp, `turn/start` or `task_started` timestamp, last successful tool-call output, first `response_item` or assistant timestamp if it eventually appears, transport (`responses_http` or websocket), `time.busy`/`time.idle` close metrics, reconnect or stream-disconnect lines, MCP/subagent state, whether stop/interrupt works, and whether a new thread or minimal config without MCPs recovers.
 
 
 ## Reporter Notes
@@ -74,6 +85,7 @@ Suggested rule:
 - `approval-friction`: Repeated approval prompts, Approve for this session misses, and noisy trusted MCP tool approvals.
 - `latency-regression`: Fast mode feels like Standard, with long thinking, search, read, or compaction stalls.
 - `token-burn`: Usage drains from background polling, idle activity, compaction loops, retries, or cached-heavy turns.
+- `patch-overwrite`: `apply_patch` accepts `*** Add File` for an existing path, turning a create operation into a silent overwrite.
 - `sensitive-files`: Secrets, local credentials, production env files, or private databases enter agent context.
 - `github-prompt-injection`: Untrusted issue, PR, comment, or web text tells the agent to ignore policy or leak secrets.
 - `file-tree-ui`: Desktop file tree, floating file panel, or file preview disappears, goes stale, or cannot be revealed.
@@ -84,6 +96,7 @@ trace-to-skill demo --list
 trace-to-skill demo remote-compact
 trace-to-skill demo windows-helper-path
 trace-to-skill demo patch-overwrite
+trace-to-skill demo thinking-hang
 trace-to-skill demo file-tree-ui
 trace-to-skill demo usage-reset-drift
 ```

package/docs/DISCOVERY.md

@@ -32,6 +32,7 @@ This page is written for maintainers, search engines, package indexes, and AI re
 - Codex Desktop file tree, folder icon, floating file panel, or built-in file preview disappears, goes stale, or cannot be revealed by `View > Toggle File Tree`.
 - Codex resume, Desktop history rendering, archived chats, context compression, or local state migrations fail after large JSONL histories, images, tool output, stale SQLite state, short `session_index.jsonl`, or project/thread metadata drift.
 - Codex model or runtime latency regresses so GPT-5.5 Fast feels like Standard, simple tasks take 10-20+ minutes, thinking stalls, or search/read/compaction phases dominate the session.
+- Codex accepts a turn, finishes local tools, or leaves a Responses stream open while the UI/CLI stays on Thinking or Working with no streamed follow-up.
 - Codex usage drains unexpectedly because of background `write_stdin` polling, idle app activity, compaction/replay overhead, retry loops, subagent fan-out, fast-mode drift, or cached-token-heavy turns.
 - Codex weekly or 5-hour reset anchors move unexpectedly, saved usage is lost, or `/status` and the dashboard disagree about reset timing or enforcement.
 - Codex usage evidence is scattered across `/status`, dashboard notes, reset tables, usage-limit messages, and token totals, making high-signal reports hard to file.
@@ -59,6 +60,7 @@ This page is written for maintainers, search engines, package indexes, and AI re
 ```bash
 npx trace-to-skill doctor .
 npx trace-to-skill demo
+npx trace-to-skill demo thinking-hang
 npx trace-to-skill scorecard .
 npx trace-to-skill lint-agents .
 npx trace-to-skill guard-github-event "$GITHUB_EVENT_PATH"
@@ -110,7 +112,7 @@ npx trace-to-skill suggest ./runs --target agents-md
 
 ## Related Keywords
 
-Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex diagnostics bundle, privacy-preserving support bundle, Codex plugin audit, Computer Use unavailable, Codex Browser plugin unavailable, bundled marketplace mismatch, generated runtime marketplace, plugin manifest missing, CODEX_HOME mismatch, Codex CLI, Codex sandbox, Windows sandbox, Codex config audit, Codex config.toml, Codex Preferences unable to save, configVersionConflict, default_permissions missing profile, Codex Windows helper path, Codex WindowsApps, Codex rg Access Denied, Codex ripgrep, CodexSandboxUsers, LocalCache Local OpenAI Codex bin, node_repl spawn setup refresh, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex remote compact, responses/compact, /compact timeout, tcp_user_timeout, stream_idle_timeout_ms, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session audit, Codex history audit, Codex session index, session_index.jsonl, Codex session state, rollout JSONL, logs_2.sqlite, codex-tui.log, sandbox.log, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage evidence, Codex rate-limit evidence, Codex usage drain, Codex usage reset, Codex weekly reset drift, reset_at changed, deterministic reset, rate limit reset, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, apply_patch Add File overwrite, patch guard, guard-patch, Add File symlink, tool_call_id, close_agent, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
+Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex diagnostics bundle, privacy-preserving support bundle, Codex plugin audit, Computer Use unavailable, Codex Browser plugin unavailable, bundled marketplace mismatch, generated runtime marketplace, plugin manifest missing, CODEX_HOME mismatch, Codex CLI, Codex sandbox, Windows sandbox, Codex config audit, Codex config.toml, Codex Preferences unable to save, configVersionConflict, default_permissions missing profile, Codex Windows helper path, Codex WindowsApps, Codex rg Access Denied, Codex ripgrep, CodexSandboxUsers, LocalCache Local OpenAI Codex bin, node_repl spawn setup refresh, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex remote compact, responses/compact, /compact timeout, tcp_user_timeout, stream_idle_timeout_ms, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, Codex thinking hang, Codex stuck thinking, Codex Working stuck, no streamed follow-up, first response_item delayed, responses_http time.idle, model_client.stream_responses_api, turn/start, task_started, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session audit, Codex history audit, Codex session index, session_index.jsonl, Codex session state, rollout JSONL, logs_2.sqlite, codex-tui.log, sandbox.log, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage evidence, Codex rate-limit evidence, Codex usage drain, Codex usage reset, Codex weekly reset drift, reset_at changed, deterministic reset, rate limit reset, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, apply_patch Add File overwrite, patch guard, guard-patch, Add File symlink, tool_call_id, close_agent, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
 
 ## Non-Goals
 

package/docs/FAILURE_TAXONOMY.md

@@ -40,6 +40,14 @@ Common signals include `GPT-5.5 Fast` feeling as slow as `Standard`, simple task
 
 The fix is to capture app/CLI/extension version, model and speed/reasoning settings, subscription or workspace, timestamps for pre-first-token, thinking, tool execution, search, read, and compaction phases, task size and lines changed, local CPU/memory/network/VPN/proxy evidence, feedback ids, before/after latency comparison, and whether API and Codex paths differ.
 
+## Codex Thinking Hang
+
+Codex can accept a turn, finish a local tool call, or keep a Responses request open while the UI or CLI remains on Thinking/Working with no streamed assistant follow-up. This is more specific than general latency: the session appears structurally accepted but the next visible assistant event never arrives or arrives after a very long gap.
+
+Common signals include `turn/start`, `task_started`, a successful tool output followed by no next assistant action, a long gap before the first `response_item`, `model_client.stream_responses_api` close lines where `time.busy` is milliseconds but `time.idle` is hundreds of seconds, `responses_http` or websocket reconnects, Stop/Ctrl+C not interrupting the stuck turn, a subagent parent thread waiting while a child remains active, and minimal `config.toml` without MCPs changing the behavior.
+
+The fix is to capture Codex version, OS, model and speed/reasoning settings, turn or thread id, prompt timestamp, last successful tool output, first `response_item` timestamp, transport evidence, `time.busy` / `time.idle`, reconnect or stream-close lines, MCP/subagent lifecycle state, stop/interrupt behavior, and whether a new thread or minimal config recovers.
+
 ## Codex Approval Friction
 
 Codex approval UX can fail even when the sandbox itself works. The common pattern is that a user chooses `Approve for this session`, `Always`, or an MCP/tool trust setting, but Codex keeps asking for approval, makes the user babysit every step, or pushes them toward `Full Access` just to get useful work done.

package/docs/OPENAI_OSS_BRIEF.md

@@ -3,18 +3,18 @@
 | Field | Value |
 | --- | --- |
 | Repository | https://github.com/grnbtqdbyx-create/trace-to-skill |
-| Package | trace-to-skill@0.1.59 |
+| Package | trace-to-skill@0.1.60 |
 | License | Apache-2.0 |
 | Codex readiness | ready (100/100) |
-| Benchmark | pass, 26 cases |
+| Benchmark | pass, 27 cases |
 
 ## Why This Repository Qualifies
 
-trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 26 public fixture cases.
+trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 27 public fixture cases.
 
 ### 500-Character Version
 
-> trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 26 public fixture cases.
+> trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 27 public fixture cases.
 
 ## How API Credits Would Be Used
 
@@ -27,10 +27,10 @@ API credits would power optional maintainer workflows on top of the local determ
 ## Evidence
 
 - Public repository: https://github.com/grnbtqdbyx-create/trace-to-skill
-- One-command package: npx trace-to-skill@0.1.59
+- One-command package: npx trace-to-skill@0.1.60
 - Open-source license: Apache-2.0
 - Codex readiness doctor: ready, 100/100, 0 failed checks.
-- Public fixture benchmark: pass, 26 cases.
+- Public fixture benchmark: pass, 27 cases.
 - Maintainer control: generated rules are suggestions, evidence is line-linked, and secrets can be redacted before sharing.
 
 ## Next Steps Before Submitting

package/docs/SCORECARD.md

@@ -9,7 +9,7 @@ Status: **pass**
 | Failed doctor checks | 0 |
 | Critical findings | 0 |
 | Built-in benchmark | pass |
-| Benchmark cases | 26 |
+| Benchmark cases | 27 |
 
 ## Doctor Summary
 
@@ -30,6 +30,7 @@ This benchmark runs the public fixture pack that ships with the repository and p
 | Codex context compaction failure | `fixtures/context-compaction.md` | 59 | 3 | 0 | `codex_remote_compact`, `context_compaction`, `weak_evidence` | pass |
 | Codex latest-turn drift after compaction | `fixtures/codex-latest-turn-drift.md` | 59 | 3 | 0 | `codex_latest_turn_drift`, `premature_completion`, `weak_evidence` | pass |
 | Codex model and runtime latency regression | `fixtures/codex-latency-regression.md` | 75 | 2 | 0 | `codex_latency_regression`, `weak_evidence` | pass |
+| Codex thinking and stream hang | `fixtures/codex-thinking-hang.md` | 75 | 2 | 0 | `codex_thinking_hang`, `weak_evidence` | pass |
 | Codex approval persistence and MCP approval friction | `fixtures/codex-approval-friction.md` | 59 | 3 | 0 | `codex_approval_friction`, `sandbox_permission`, `weak_evidence` | pass |
 | Codex sandbox permission failure | `fixtures/sandbox-permission.md` | 59 | 3 | 0 | `codex_windows_helper_path`, `sandbox_permission`, `weak_evidence` | pass |
 | Codex Windows helper and bundled tool path failure | `fixtures/codex-windows-helper-path.md` | 43 | 4 | 0 | `codex_plugin_runtime`, `codex_windows_helper_path`, `sandbox_permission`, `weak_evidence` | pass |

package/docs/USE_CASES.md

@@ -13,13 +13,14 @@ npx trace-to-skill demo remote-compact
 npx trace-to-skill demo windows-helper-path
 npx trace-to-skill demo patch-overwrite
 npx trace-to-skill demo latency-regression
+npx trace-to-skill demo thinking-hang
 ```
 
 What it proves:
 
 - packaged fixtures can produce a real Codex issue report immediately
 - maintainers can inspect the output shape before sharing any private log
-- demos cover remote compact failures, Windows helper path failures, patch overwrite safety, approval friction, latency, token burn, sensitive files, and prompt injection
+- demos cover remote compact failures, Windows helper path failures, patch overwrite safety, approval friction, latency, Thinking hangs, token burn, sensitive files, and prompt injection
 
 See the generated demo output in [docs/DEMO.md](DEMO.md).
 
@@ -42,7 +43,7 @@ What it proves:
 Recommended CI surface:
 
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.59
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.60
   with:
     mode: all
     doctor-threshold: "85"
@@ -226,7 +227,21 @@ This catches signals such as high `Code Helper (Renderer)` or `Code Helper (Plug
 
 Include process names/PIDs, CPU/GPU/RSS samples over time, log-loop snippets, workspace Git-root state, animation/reduce-motion state, and whether closing the panel/app, killing exact PIDs, `git init`, rollback, or restart clears the leak.
 
-## 16. Patch Overwrite Guard
+## 16. Codex Thinking Hang Evidence
+
+Use this when Codex accepts a prompt, finishes a local tool call, or keeps a Responses stream open but the UI/CLI remains on Thinking or Working with no visible assistant follow-up.
+
+```bash
+npx trace-to-skill demo thinking-hang
+npx trace-to-skill analyze ./runs --format json
+npx trace-to-skill codex-report ./runs --output openai-codex-thinking-hang.md
+```
+
+This catches signals such as `turn/start`, `task_started`, a completed local tool result, a long gap before the first `response_item`, `model_client.stream_responses_api` close lines where `time.busy` is only milliseconds but `time.idle` is hundreds of seconds, Stop/Ctrl+C failing to interrupt, subagent parent threads staying stuck while a child is active, and minimal `config.toml` without MCPs changing the behavior.
+
+Include the Codex version, OS, model and reasoning/speed settings, turn or thread id, prompt timestamp, last successful tool output, first `response_item` timestamp, `responses_http` or websocket transport evidence, `time.busy` / `time.idle`, MCP/subagent state, stop/interrupt behavior, and whether a new thread or minimal config recovers.
+
+## 17. Patch Overwrite Guard
 
 Use this before applying a generated patch when you want create/update/delete semantics checked against the actual workspace.
 
@@ -243,7 +258,7 @@ For a public demo report:
 npx trace-to-skill demo patch-overwrite
 ```
 
-## 17. OpenAI Codex Issue Report
+## 18. OpenAI Codex Issue Report
 
 Use this when you want to file or update an OpenAI/Codex issue with a concise, evidence-backed report instead of pasting a full transcript.
 
@@ -256,7 +271,7 @@ The report includes the likely Codex failure class, line-linked evidence, diagno
 
 For a cluster-to-command map of current Codex issue patterns, see [CODEX_ISSUE_MAP.md](CODEX_ISSUE_MAP.md).
 
-## 18. Sensitive File Access Evidence
+## 19. Sensitive File Access Evidence
 
 Use this when a trace suggests an agent read, attached, uploaded, diffed, or indexed credential-bearing files.
 
@@ -269,7 +284,7 @@ This catches signals such as `.env`, `.env.production`, `.npmrc`, `.pypirc`, `.n
 
 Before publishing evidence, run `trace-to-skill redact` and attach only redacted excerpts plus the file path/class.
 
-## 19. GitHub Context Guard
+## 20. GitHub Context Guard
 
 Use this before an agent reads untrusted GitHub text.
 
@@ -286,7 +301,7 @@ Use it when:
 - a bot asks Codex to triage untrusted user reports
 - logs or comments might contain instructions like "ignore previous instructions" or "print secrets"
 
-## 20. Failed Agent Run To Reviewable Rule
+## 21. Failed Agent Run To Reviewable Rule
 
 Use this when a coding agent made a repeated workflow mistake.
 
@@ -304,7 +319,7 @@ Recommended maintainer loop:
 4. Copy only evidence-backed rules into the real policy file.
 5. Run `eval` or `scorecard` in CI so the same failure does not silently return.
 
-## 21. Privacy-Preserving Adoption
+## 22. Privacy-Preserving Adoption
 
 Use this when you want public evidence without leaking private traces.
 

package/fixtures/codex-thinking-hang.md

@@ -0,0 +1,32 @@
+# Codex Thinking Hang Fixture
+
+Issue cluster: Codex Desktop or CLI accepts a turn, local tools finish, or the backend request stays open, but the visible session remains stuck on Thinking or Working.
+
+Environment:
+- Codex Desktop 26.527.31326
+- macOS and Windows reports
+- GPT-5.5 and GPT-5.4 reports
+- Transport seen in logs: `responses_http` and `responses_websocket`
+
+Observed behavior:
+- Codex Desktop can remain in Thinking after successful tool calls with no streamed follow-up or a hung /responses request.
+- The tools returned instantly (`pwd` and `rg --files`), then the app sat for minutes with no next assistant action until interrupt.
+- A turn was submitted immediately: `response_routed method=turn/start durationMs=4` and `IAB_LIFECYCLE captured turn route`.
+- The persisted JSONL showed `task_started`, then `turn_context model=gpt-5.5 effort=xhigh`, then the user message.
+- The first response_item type=reasoning appeared only after a 1,838.5 second gap.
+- Another report showed `model_client.stream_responses_api{transport="responses_http" api.path="responses"}: close time.busy=51.5ms time.idle=380s`.
+- Several turns had `time.busy=6.83ms time.idle=984s`, `time.busy=12.1ms time.idle=671s`, and `time.busy=8.78ms time.idle=390s`.
+- Stop does not work: the stop button does not respond and Ctrl+C cannot exit the CLI; the user has to force quit.
+- In subagent runs, the parent main thread stays stuck thinking while a child thread remains active, so the UI needs `waiting_on_child`, `child_requires_input`, or `child_cleanup_pending`.
+- One workaround was a minimal `config.toml` without MCPs because a broken MCP that was not responding kept the session stuck on Thinking.
+
+What would make this report useful:
+- exact app, CLI, or extension version
+- OS, IDE, model, reasoning effort, speed mode, and subscription/workspace
+- turn id, thread id, prompt timestamp, `turn/start` or `task_started` timestamp
+- last successful tool call output and first `response_item` timestamp
+- transport path such as `responses_http` or websocket
+- `time.busy` and `time.idle` close metrics
+- reconnect or stream-disconnect lines
+- whether stop, interrupt, or a new thread recovers
+- MCP and subagent state, especially whether a minimal config without MCPs fixes the hang

package/llms.txt

@@ -25,6 +25,7 @@ Runtime: Node.js 20+
 - Codex MCP runtime failures such as cancelled non-interactive approvals, `request_user_input is not supported in exec mode`, dropped namespace or `serverName` metadata, `unsupported call: mcp__...__...`, and closed `StdioServerTransport` sessions
 - Codex resume and session-state failures such as frozen resume pickers, large rollout JSONL histories, short `session_index.jsonl`, sluggish Desktop thread rendering, dropped recent context after resume, archived chat loading failures, and `state_5.sqlite` / `goals_1.sqlite` migration drift
 - Codex file tree and workspace navigation UI failures such as `View > Toggle File Tree` doing nothing, missing folder icons, stale floating file panels, and built-in preview failures
+- Codex Thinking or Working hangs after accepted turns, successful local tools, or open Responses streams with no streamed assistant follow-up
 - Codex token-burn and usage-drain failures such as background `write_stdin` polling, idle app usage, compaction tax, retry/tool loops, cached-token-heavy turns, fast-mode drift, subagent fan-out, and unclear usage attribution
 - Codex usage reset schedule drift such as weekly reset dates moving, `reset_at` jumping, saved usage disappearing, outage compensation resets changing the anchor, and `/status` disagreeing with enforcement
 - Codex usage evidence packaging for scattered `/status`, reset-table, usage-limit, and token-total snippets
@@ -64,6 +65,7 @@ failed agent run -> failure class -> evidence-backed AGENTS.md/SKILL.md suggesti
 ```bash
 npx trace-to-skill doctor .
 npx trace-to-skill demo
+npx trace-to-skill demo thinking-hang
 npx trace-to-skill lint-agents .
 npx trace-to-skill guard-github-event "$GITHUB_EVENT_PATH"
 npx trace-to-skill guard-patch ./change.patch --root .
@@ -85,7 +87,7 @@ npx trace-to-skill init --comment --sarif
 ## GitHub Action
 
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.59
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.60
   with:
     mode: all
     doctor-threshold: "85"
@@ -157,6 +159,10 @@ npx trace-to-skill init --comment --sarif
 - Codex state_5.sqlite no such table thread_goals
 - Codex session-audit privacy-preserving rollout JSONL summary
 - Codex session_index.jsonl shorter than rollout files
+- Codex thinking hang after successful tool calls
+- Codex stuck Thinking no streamed follow-up
+- Codex responses_http time.idle hundreds seconds
+- Codex first response_item delayed after turn/start task_started
 - OpenAI Codex issue report from failed trace
 - Codex bug report evidence checklist
 - Codex token burn write_stdin background polling

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "trace-to-skill",
-  "version": "0.1.59",
+  "version": "0.1.60",
   "description": "Turn failed AI coding-agent runs into reusable AGENTS.md rules, SKILL.md files, and eval evidence.",
   "type": "module",
   "main": "dist/src/index.js",
@@ -68,6 +68,8 @@
     "codex-context-drift",
     "latest-message",
     "codex-latency",
+    "codex-thinking-hang",
+    "codex-stuck-thinking",
     "gpt-5-5",
     "codex-approval",
     "mcp-approval",

package/schemas/analysis-result.schema.json

@@ -72,6 +72,7 @@
         "context_compaction",
         "codex_latest_turn_drift",
         "codex_latency_regression",
+        "codex_thinking_hang",
         "codex_approval_friction",
         "sandbox_permission",
         "codex_windows_helper_path",