trace-to-skill 0.1.54 → 0.1.55

package/README.md

@@ -26,6 +26,7 @@ npx trace-to-skill scorecard-comment . --dry-run
 npx trace-to-skill guard-github-event "$GITHUB_EVENT_PATH"
 npx trace-to-skill guard-patch ./change.patch --root .
 npx trace-to-skill session-audit ~/.codex --format json
+npx trace-to-skill config-audit ~/.codex --format json
 npx trace-to-skill comment ./runs --dry-run
 npx trace-to-skill compare --before ./runs/before --after ./runs/after
 ```
@@ -51,6 +52,7 @@ Use it when you need to:
 - **Protect agent context:** run `trace-to-skill guard-github-event "$GITHUB_EVENT_PATH"` before feeding issue, PR, comment, discussion, check-run, or commit text into an agent.
 - **Prevent unsafe patch overwrites:** run `trace-to-skill guard-patch ./change.patch --root .` before applying generated patches so `*** Add File` cannot silently replace an existing file or symlink target.
 - **Audit local Codex session history:** run `trace-to-skill session-audit ~/.codex --format json` to summarize rollout JSONL sizes, huge lines, parse errors, state files, and short `session_index.jsonl` evidence without publishing private transcripts.
+- **Audit Codex config drift:** run `trace-to-skill config-audit ~/.codex --format json` to summarize model pins, sandbox/approval posture, Windows elevated sandbox mode, missing permission profiles, plugin cache drift, and MCP approval sprawl.
 - **Share failed traces safely:** run `trace-to-skill redact ./runs --output redacted-runs` before publishing anonymized failure fixtures.
 - **Catch sensitive file access:** run `trace-to-skill analyze ./runs` when an agent trace includes `.env`, private keys, `.npmrc`, cloud credentials, local databases, or production secret manifests.
 - **Report remote compact failures:** run `trace-to-skill codex-report ./runs` when `/compact` or auto-compaction fails with `responses/compact` timeouts, stream disconnects, provider timeout workarounds, or long-thread recovery loss.
@@ -94,6 +96,7 @@ Open-source maintainers do not need more AI-generated noise. They need agents th
 - Did an `apply_patch` create operation actually overwrite an existing file or symlink target?
 - Can a generated patch be guarded before it touches the workspace?
 - Which local Codex rollout JSONL or `session_index.jsonl` files make `codex resume` or Desktop history sluggish?
+- Which `config.toml` setting explains a sandbox, approval, plugin, model, or Preferences save regression?
 - Did Codex sandbox setup or workspace permissions block every tool call?
 - Did quota accounting, account switching, or reset timing contradict the runtime usage-limit error?
 - Did an MCP tool appear in `tools/list` but fail at Codex runtime because approval, namespace routing, or stdio lifecycle broke?
@@ -218,6 +221,7 @@ trace-to-skill demo latency-regression
 trace-to-skill demo patch-overwrite
 trace-to-skill guard-patch ./change.patch --root .
 trace-to-skill session-audit ~/.codex --format json
+trace-to-skill config-audit ~/.codex --format json
 trace-to-skill demo --format json
 ```
 
@@ -380,6 +384,7 @@ Stable machine-readable contracts are published with the npm package and release
 - [`schemas/scorecard-result.schema.json`](schemas/scorecard-result.schema.json) describes `trace-to-skill scorecard --format json`.
 - [`schemas/oss-brief-result.schema.json`](schemas/oss-brief-result.schema.json) describes `trace-to-skill oss-brief --format json`.
 - [`schemas/patch-guard-result.schema.json`](schemas/patch-guard-result.schema.json) describes `trace-to-skill guard-patch --format json`.
+- [`schemas/config-audit-result.schema.json`](schemas/config-audit-result.schema.json) describes `trace-to-skill config-audit --format json`.
 - [`schemas/session-audit-result.schema.json`](schemas/session-audit-result.schema.json) describes `trace-to-skill session-audit --format json`.
 
 These schemas let downstream Codex workflows, dashboards, and CI bots consume reports without scraping Markdown.
@@ -412,7 +417,7 @@ jobs:
       issues: write
     steps:
       - uses: actions/checkout@v5
-      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.54
+      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.55
         with:
           mode: all
           doctor-threshold: "85"
@@ -461,7 +466,7 @@ Composite action usage:
 
 ```yaml
 - id: trace-to-skill
-  uses: grnbtqdbyx-create/trace-to-skill@v0.1.54
+  uses: grnbtqdbyx-create/trace-to-skill@v0.1.55
   with:
     mode: all
     doctor-threshold: "85"
@@ -503,7 +508,7 @@ Action outputs:
 
 By default, generated reports are also appended to the GitHub Actions Job Summary. Set `job-summary: "false"` to disable that UI output.
 
-Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.54` executes that release's checked-out source instead of pulling the default branch at runtime.
+Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.55` executes that release's checked-out source instead of pulling the default branch at runtime.
 
 ## Codex Skill
 

package/dist/src/cli.js

@@ -3,6 +3,7 @@ import { writeFile } from "node:fs/promises";
 import { lintAgents, renderAgentsLintMarkdown } from "./agentsLint.js";
 import { analyzeTargets } from "./analyze.js";
 import { renderBenchmarkMarkdown, runBenchmark } from "./benchmark.js";
+import { auditCodexConfig, renderConfigAuditMarkdown } from "./configAudit.js";
 import { listDemoScenarios, renderDemoMarkdown, renderDemoScenarioList, runDemo } from "./demo.js";
 import { doctorRepo } from "./doctor.js";
 import { compareAnalyses, evaluate } from "./eval.js";
@@ -166,6 +167,14 @@ async function main() {
         process.exitCode = result.status === "fail" ? 1 : 0;
         return;
     }
+    if (parsed.command === "config-audit") {
+        const result = await auditCodexConfig(parsed.targets[0] ?? "~/.codex");
+        const format = String(parsed.flags.format ?? "markdown");
+        const output = format === "json" ? `${JSON.stringify(result, null, 2)}\n` : renderConfigAuditMarkdown(result);
+        await writeOutput(output, parsed.flags.output);
+        process.exitCode = result.status === "fail" ? 1 : 0;
+        return;
+    }
     if (parsed.command === "comment") {
         const result = await analyzeTargets(parsed.targets);
         const body = renderPrComment(result);
@@ -340,6 +349,7 @@ Usage:
   trace-to-skill guard-github-event [event.json] [--threshold 80] [--format markdown|json] [--output report.md]
   trace-to-skill guard-patch <patch-file> [--root repo-dir] [--format markdown|json] [--output report.md]
   trace-to-skill session-audit [codex-home-or-sessions-dir] [--large-mb 10] [--huge-line-kb 512] [--format markdown|json]
+  trace-to-skill config-audit [codex-home-or-config.toml] [--format markdown|json]
   trace-to-skill comment <trace-file-or-dir> [--dry-run] [--token $GITHUB_TOKEN]
   trace-to-skill compare --before <old-run> --after <new-run> [--format markdown|json]
   trace-to-skill doctor [repo-dir] [--threshold 85] [--format markdown|json|comment] [--output report.md]
@@ -362,6 +372,7 @@ Examples:
   trace-to-skill guard-github-event "$GITHUB_EVENT_PATH"
   trace-to-skill guard-patch ./change.patch --root .
   trace-to-skill session-audit ~/.codex --format json
+  trace-to-skill config-audit ~/.codex --format json
   trace-to-skill comment ./runs
   trace-to-skill compare --before ./runs/before --after ./runs/after
   trace-to-skill doctor . --threshold 85

package/dist/src/cli.js.map

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package/dist/src/configAudit.d.ts

@@ -0,0 +1,32 @@
+export type ConfigAuditStatus = "pass" | "warn" | "fail";
+export type ConfigAuditSeverity = "warning" | "error";
+export interface ConfigAuditFinding {
+    severity: ConfigAuditSeverity;
+    kind: "missing_config" | "model_pin" | "danger_full_access" | "windows_elevated_sandbox" | "default_permissions_missing" | "deprecated_codex_hooks" | "machine_local_project_state" | "plugin_cache_missing" | "mcp_approval_sprawl";
+    line?: number;
+    message: string;
+}
+export interface ConfigAuditResult {
+    generatedAt: string;
+    target: string;
+    configPath: string;
+    status: ConfigAuditStatus;
+    summary: {
+        exists: boolean;
+        sizeBytes: number;
+        topLevelKeys: string[];
+        sections: string[];
+        mcpServers: number;
+        pluginSections: number;
+    };
+    values: {
+        model?: string;
+        approvalPolicy?: string;
+        sandboxMode?: string;
+        windowsSandbox?: string;
+        defaultPermissions?: string;
+    };
+    findings: ConfigAuditFinding[];
+}
+export declare function auditCodexConfig(target?: string): Promise<ConfigAuditResult>;
+export declare function renderConfigAuditMarkdown(result: ConfigAuditResult): string;

package/dist/src/configAudit.js

@@ -0,0 +1,358 @@
+import { promises as fs } from "node:fs";
+import os from "node:os";
+import path from "node:path";
+export async function auditCodexConfig(target = "~/.codex") {
+    const resolvedTarget = path.resolve(expandHome(target));
+    const configPath = await resolveConfigPath(resolvedTarget);
+    try {
+        const content = await fs.readFile(configPath, "utf8");
+        const fileStat = await fs.stat(configPath);
+        const entries = parseTomlEntries(content);
+        const findings = await collectFindings(configPath, entries);
+        const sections = entries.filter((entry) => entry.section && !entry.key).map((entry) => entry.section);
+        const topLevelKeys = entries.filter((entry) => !entry.section && entry.key).map((entry) => entry.key);
+        return {
+            generatedAt: new Date().toISOString(),
+            target: resolvedTarget,
+            configPath,
+            status: statusFor(findings),
+            summary: {
+                exists: true,
+                sizeBytes: fileStat.size,
+                topLevelKeys,
+                sections,
+                mcpServers: sections.filter((section) => section.startsWith("mcp_servers.") || section.startsWith("mcpServers.")).length,
+                pluginSections: sections.filter((section) => section.startsWith("plugins.")).length
+            },
+            values: {
+                model: stringValue(findAssignment(entries, undefined, "model")?.value),
+                approvalPolicy: stringValue(findAssignment(entries, undefined, "approval_policy")?.value),
+                sandboxMode: stringValue(findAssignment(entries, undefined, "sandbox_mode")?.value),
+                windowsSandbox: stringValue(findAssignment(entries, "windows", "sandbox")?.value),
+                defaultPermissions: stringValue(findAssignment(entries, undefined, "default_permissions")?.value)
+            },
+            findings
+        };
+    }
+    catch (error) {
+        const missing = error.code === "ENOENT";
+        const findings = [{
+                severity: missing ? "warning" : "error",
+                kind: "missing_config",
+                message: missing
+                    ? "Codex config.toml was not found at the resolved target."
+                    : `Codex config.toml could not be read: ${error.message}`
+            }];
+        return {
+            generatedAt: new Date().toISOString(),
+            target: resolvedTarget,
+            configPath,
+            status: statusFor(findings),
+            summary: {
+                exists: false,
+                sizeBytes: 0,
+                topLevelKeys: [],
+                sections: [],
+                mcpServers: 0,
+                pluginSections: 0
+            },
+            values: {},
+            findings
+        };
+    }
+}
+export function renderConfigAuditMarkdown(result) {
+    const lines = [
+        "# trace-to-skill Codex Config Audit",
+        "",
+        `Status: **${result.status}**`,
+        "",
+        `Target: \`${result.target}\``,
+        `Config: \`${result.configPath}\``,
+        `Exists: ${result.summary.exists ? "yes" : "no"}`,
+        `Size: ${result.summary.sizeBytes} bytes`,
+        `Top-level keys: ${result.summary.topLevelKeys.length > 0 ? result.summary.topLevelKeys.join(", ") : "none"}`,
+        `Sections: ${result.summary.sections.length}`,
+        `MCP servers: ${result.summary.mcpServers}`,
+        `Plugin sections: ${result.summary.pluginSections}`,
+        "",
+        "## Effective Values",
+        "",
+        `- model: ${formatValue(result.values.model)}`,
+        `- approval_policy: ${formatValue(result.values.approvalPolicy)}`,
+        `- sandbox_mode: ${formatValue(result.values.sandboxMode)}`,
+        `- [windows].sandbox: ${formatValue(result.values.windowsSandbox)}`,
+        `- default_permissions: ${formatValue(result.values.defaultPermissions)}`,
+        "",
+        "## Findings",
+        ""
+    ];
+    if (result.findings.length === 0) {
+        lines.push("No Codex config findings detected.", "");
+    }
+    else {
+        for (const finding of result.findings) {
+            const location = finding.line ? ` line ${finding.line}` : "";
+            lines.push(`- **${finding.severity}** ${finding.kind}${location}: ${finding.message}`);
+        }
+        lines.push("");
+    }
+    lines.push("Suggested next step:", "", "- Attach this report to config, sandbox, approval, or plugin-runtime issues instead of pasting raw config with secrets.", "- Back up `~/.codex/config.toml` before manually changing sandbox, permission, model, MCP, or plugin settings.", "");
+    return lines.join("\n");
+}
+async function resolveConfigPath(target) {
+    try {
+        const targetStat = await fs.stat(target);
+        if (targetStat.isDirectory()) {
+            return path.join(target, "config.toml");
+        }
+    }
+    catch {
+        if (path.basename(target) !== "config.toml" && !target.endsWith(".toml")) {
+            return path.join(target, "config.toml");
+        }
+    }
+    return target;
+}
+async function collectFindings(configPath, entries) {
+    const findings = [];
+    const model = findAssignment(entries, undefined, "model");
+    const sandboxMode = findAssignment(entries, undefined, "sandbox_mode");
+    const windowsSandbox = findAssignment(entries, "windows", "sandbox");
+    const defaultPermissions = findAssignment(entries, undefined, "default_permissions");
+    const permissionProfiles = collectPermissionProfiles(entries);
+    const sections = entries.filter((entry) => entry.section && !entry.key).map((entry) => entry.section);
+    if (model && typeof model.value === "string") {
+        findings.push({
+            severity: "warning",
+            kind: "model_pin",
+            line: model.line,
+            message: `model is pinned to "${model.value}"; include this in reports about update, routing, latency, or unavailable-model regressions.`
+        });
+    }
+    if (sandboxMode?.value === "danger-full-access") {
+        findings.push({
+            severity: "warning",
+            kind: "danger_full_access",
+            line: sandboxMode.line,
+            message: "sandbox_mode is danger-full-access; this is useful evidence for approval/sandbox reports but broad for daily OSS maintenance."
+        });
+    }
+    if (windowsSandbox?.value === "elevated") {
+        findings.push({
+            severity: "warning",
+            kind: "windows_elevated_sandbox",
+            line: windowsSandbox.line,
+            message: "[windows].sandbox is elevated; recent Codex reports link this mode to node_repl or sandbox setup refresh failures on some Windows installs."
+        });
+    }
+    if (defaultPermissions && typeof defaultPermissions.value === "string" && !permissionProfiles.has(defaultPermissions.value)) {
+        findings.push({
+            severity: "error",
+            kind: "default_permissions_missing",
+            line: defaultPermissions.line,
+            message: `default_permissions references missing permissions profile "${defaultPermissions.value}".`
+        });
+    }
+    for (const entry of entries) {
+        if (entry.section === "features" && entry.key === "codex_hooks") {
+            findings.push({
+                severity: "warning",
+                kind: "deprecated_codex_hooks",
+                line: entry.line,
+                message: "deprecated [features].codex_hooks is present; use [features].hooks instead."
+            });
+        }
+        if (entry.section?.startsWith("projects.") && entry.key === "trusted_level") {
+            findings.push({
+                severity: "warning",
+                kind: "machine_local_project_state",
+                line: entry.line,
+                message: "projects.* trusted_level is machine-local state; syncing it can cause confusing trust drift across machines."
+            });
+        }
+    }
+    const approvalModeEntries = entries.filter((entry) => entry.section?.includes(".tools.") && entry.key === "approval_mode");
+    if (approvalModeEntries.length >= 20) {
+        findings.push({
+            severity: "warning",
+            kind: "mcp_approval_sprawl",
+            line: approvalModeEntries[0]?.line,
+            message: `${approvalModeEntries.length} per-tool MCP approval_mode entries found; this matches reports where MCP approval config becomes hard to maintain.`
+        });
+    }
+    for (const section of sections) {
+        if (section.startsWith("projects.") && /\/|\\|:/.test(section)) {
+            findings.push({
+                severity: "warning",
+                kind: "machine_local_project_state",
+                line: findSectionLine(entries, section),
+                message: `project section appears to contain a machine-local path: [${section}]`
+            });
+        }
+    }
+    findings.push(...(await findMissingPluginCaches(configPath, entries)));
+    return findings;
+}
+async function findMissingPluginCaches(configPath, entries) {
+    const codexHome = path.dirname(configPath);
+    const findings = [];
+    const pluginSections = entries.filter((entry) => entry.section?.startsWith("plugins.") && !entry.key);
+    for (const sectionEntry of pluginSections) {
+        const section = sectionEntry.section;
+        const enabled = findAssignment(entries, section, "enabled");
+        if (enabled?.value !== true) {
+            continue;
+        }
+        const pluginId = parsePluginSectionId(section);
+        if (!pluginId) {
+            continue;
+        }
+        const [name, marketplace] = pluginId.split("@");
+        if (!name || !marketplace) {
+            continue;
+        }
+        const cachePath = path.join(codexHome, "plugins", "cache", marketplace, name);
+        if (!(await pathExists(cachePath))) {
+            findings.push({
+                severity: "warning",
+                kind: "plugin_cache_missing",
+                line: sectionEntry.line,
+                message: `enabled plugin "${pluginId}" has no cache directory at ${relativeHome(cachePath)}.`
+            });
+        }
+    }
+    return findings;
+}
+function parseTomlEntries(content) {
+    const result = [];
+    let currentSection;
+    content.split(/\r?\n/).forEach((rawLine, index) => {
+        const line = stripTomlComment(rawLine).trim();
+        if (!line) {
+            return;
+        }
+        const section = /^\[([^\]]+)\]$/.exec(line);
+        if (section) {
+            currentSection = section[1];
+            result.push({ line: index + 1, section: currentSection });
+            return;
+        }
+        const assignment = /^([A-Za-z0-9_-]+)\s*=\s*(.+)$/.exec(line);
+        if (!assignment) {
+            return;
+        }
+        result.push({
+            line: index + 1,
+            section: currentSection,
+            key: assignment[1],
+            value: parseTomlValue(assignment[2].trim())
+        });
+    });
+    return result;
+}
+function parseTomlValue(value) {
+    if (value.startsWith("\"") || value.startsWith("'")) {
+        return parseTomlString(value);
+    }
+    if (value === "true") {
+        return true;
+    }
+    if (value === "false") {
+        return false;
+    }
+    return value;
+}
+function parseTomlString(value) {
+    if (value.startsWith("\"")) {
+        const match = /^"((?:\\.|[^"\\])*)"/.exec(value);
+        return match ? match[1].replace(/\\"/g, "\"").replace(/\\\\/g, "\\") : value;
+    }
+    const match = /^'([^']*)'/.exec(value);
+    return match ? match[1] : value;
+}
+function stripTomlComment(line) {
+    let quote;
+    for (let index = 0; index < line.length; index += 1) {
+        const char = line[index];
+        const previous = line[index - 1];
+        if ((char === "\"" || char === "'") && previous !== "\\") {
+            quote = quote === char ? undefined : quote ?? char;
+            continue;
+        }
+        if (char === "#" && !quote) {
+            return line.slice(0, index);
+        }
+    }
+    return line;
+}
+function collectPermissionProfiles(entries) {
+    const profiles = new Set();
+    for (const entry of entries) {
+        if (!entry.section) {
+            continue;
+        }
+        const match = /^permissions\.((?:"[^"]+"|'[^']+'|[^.]+))/.exec(entry.section);
+        if (match) {
+            profiles.add(unquoteTomlPart(match[1]));
+        }
+    }
+    return profiles;
+}
+function findAssignment(entries, section, key) {
+    return entries.find((entry) => entry.section === section && entry.key === key);
+}
+function findSectionLine(entries, section) {
+    return entries.find((entry) => entry.section === section && !entry.key)?.line;
+}
+function parsePluginSectionId(section) {
+    const raw = section.slice("plugins.".length);
+    return unquoteTomlPart(raw);
+}
+function unquoteTomlPart(value) {
+    if (value.startsWith("\"") || value.startsWith("'")) {
+        return parseTomlString(value);
+    }
+    return value;
+}
+function stringValue(value) {
+    return typeof value === "string" ? value : undefined;
+}
+function statusFor(findings) {
+    if (findings.some((finding) => finding.severity === "error")) {
+        return "fail";
+    }
+    return findings.length > 0 ? "warn" : "pass";
+}
+function formatValue(value) {
+    return value ? `\`${value}\`` : "not set";
+}
+async function pathExists(candidate) {
+    try {
+        await fs.access(candidate);
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+function expandHome(input) {
+    if (input === "~") {
+        return os.homedir();
+    }
+    if (input.startsWith("~/")) {
+        return path.join(os.homedir(), input.slice(2));
+    }
+    return input;
+}
+function relativeHome(input) {
+    const home = os.homedir();
+    if (input === home) {
+        return "~";
+    }
+    if (input.startsWith(`${home}${path.sep}`)) {
+        return `~${path.sep}${path.relative(home, input)}`;
+    }
+    return input;
+}
+//# sourceMappingURL=configAudit.js.map

package/dist/src/configAudit.js.map

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package/dist/src/index.d.ts

@@ -1,6 +1,8 @@
 export { lintAgents, renderAgentsLintMarkdown } from "./agentsLint.js";
 export { analyzeInputs, analyzeTargets } from "./analyze.js";
 export { renderBenchmarkMarkdown, runBenchmark } from "./benchmark.js";
+export { auditCodexConfig, renderConfigAuditMarkdown } from "./configAudit.js";
+export type { ConfigAuditFinding, ConfigAuditResult, ConfigAuditSeverity, ConfigAuditStatus } from "./configAudit.js";
 export { listDemoScenarios, renderDemoMarkdown, renderDemoScenarioList, runDemo } from "./demo.js";
 export { doctorRepo } from "./doctor.js";
 export { compareAnalyses, evaluate } from "./eval.js";

package/dist/src/index.js

@@ -1,6 +1,7 @@
 export { lintAgents, renderAgentsLintMarkdown } from "./agentsLint.js";
 export { analyzeInputs, analyzeTargets } from "./analyze.js";
 export { renderBenchmarkMarkdown, runBenchmark } from "./benchmark.js";
+export { auditCodexConfig, renderConfigAuditMarkdown } from "./configAudit.js";
 export { listDemoScenarios, renderDemoMarkdown, renderDemoScenarioList, runDemo } from "./demo.js";
 export { doctorRepo } from "./doctor.js";
 export { compareAnalyses, evaluate } from "./eval.js";

package/dist/src/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,wBAAwB,EAAE,MAAM,iBAAiB,CAAC;AACvE,OAAO,EAAE,aAAa,EAAE,cAAc,EAAE,MAAM,cAAc,CAAC;AAC7D,OAAO,EAAE,uBAAuB,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAC;AACvE,OAAO,EAAE,gBAAgB,EAAE,yBAAyB,EAAE,MAAM,kBAAkB,CAAC;AAE/E,OAAO,EAAE,iBAAiB,EAAE,kBAAkB,EAAE,sBAAsB,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACnG,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AACzC,OAAO,EAAE,eAAe,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AACtD,OAAO,EAAE,yBAAyB,EAAE,0BAA0B,EAAE,MAAM,oBAAoB,CAAC;AAC3F,OAAO,EAAE,sBAAsB,EAAE,MAAM,aAAa,CAAC;AACrD,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAC;AACxC,OAAO,EAAE,sBAAsB,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AACpE,OAAO,EAAE,iBAAiB,EAAE,cAAc,EAAE,wBAAwB,EAAE,MAAM,iBAAiB,CAAC;AAE9F,OAAO,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AACxD,OAAO,EAAE,iBAAiB,EAAE,sBAAsB,EAAE,gBAAgB,EAAE,oBAAoB,EAAE,qBAAqB,EAAE,cAAc,EAAE,eAAe,EAAE,WAAW,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAClM,OAAO,EAAE,uBAAuB,EAAE,wBAAwB,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAC;AACjG,OAAO,EAAE,kBAAkB,EAAE,0BAA0B,EAAE,MAAM,mBAAmB,CAAC"}

package/docs/CODEX_ISSUE_MAP.md

@@ -24,6 +24,7 @@ npx trace-to-skill codex-report redacted-runs --output openai-codex-issue.md
 | Tool-call integrity and rollback failures | `apply_patch` overwrites an existing `Add File` target, unmatched `tool_call_id`, `close_agent` hangs, failed revert/undo, unsafe diff application | `codex_tool_call_integrity` | `trace-to-skill codex-report ./runs` or `trace-to-skill guard-patch ./change.patch --root .` |
 | Latency regressions | GPT-5.5 Fast feels like Standard, simple tasks take 10-20+ minutes, pre-first-token or thinking stalls, slow search/read/compaction, hours for small code changes | `codex_latency_regression` | `trace-to-skill codex-report ./runs` |
 | Approval persistence and MCP approval friction | `Approve for this session` is not remembered, command approval cache misses, repeated file-change approvals, `approval_policy = "never"` still prompts for MCP tools, per-tool approval configs explode | `codex_approval_friction` | `trace-to-skill codex-report ./runs` |
+| Config and Preferences drift | `configVersionConflict`, Preferences `Unable to save`, stale model pin, missing `default_permissions` profile, enabled plugin cache missing, Windows elevated sandbox mode | `sandbox_permission`, `codex_plugin_runtime`, `codex_approval_friction` | `trace-to-skill config-audit ~/.codex --format json` |
 | Quota mismatch | `/status` or usage page shows quota left, but runtime says `You've hit your usage limit`; account/workspace reset or cache confusion | `quota_mismatch` | `trace-to-skill codex-report ./runs` |
 | Sensitive file exclusion | `.env`, private keys, `.npmrc`, cloud credentials, local databases, or production secret manifests entered agent context | `sensitive_file_access` | `trace-to-skill codex-report ./runs` |
 | Context compaction failures | `Error running remote compact task`, `context_length_exceeded`, compaction loops, `responses/compact` stream disconnects | `context_compaction` | `trace-to-skill analyze ./runs` |
@@ -52,6 +53,7 @@ npx trace-to-skill codex-report redacted-runs --output openai-codex-issue.md
 - Include `session-audit` output, largest rollout JSONL sizes, largest line sizes, parse-error counts, `session_index.jsonl` line count, and state-file presence for resume/session-state failures.
 - Include pre-first-token, thinking, tool, search, read, and compaction timings plus model/speed settings for latency regressions.
 - Include selected approval scope, displayed vs executed command, MCP server/tool names, visible args, repeated prompt count, and config snippets for approval-friction reports.
+- Include `config-audit` output for Preferences/config, sandbox, model-pin, MCP approval, and plugin-cache reports.
 - Include plugin name/version, cache path, helper path, native pipe env vars, settings/plugin-list errors, and restart behavior for plugin runtime failures.
 - Include app version, OS, screenshot or screen recording, menu/shortcut used, workspace attachment state, file-tree icon visibility, floating-panel refresh behavior, file preview extension, and persisted panel-state keys for file-tree UI failures.
 - Include the latest user request, stale earlier prompt/response, compaction timing, context size, and feedback/thread id for latest-turn drift.
@@ -69,6 +71,7 @@ npx trace-to-skill codex-report redacted-runs --output openai-codex-issue.md
 - Tool-call integrity and rollback failures: https://github.com/openai/codex/issues/25399, https://github.com/openai/codex/issues/25380, https://github.com/openai/codex/issues/25426, https://github.com/openai/codex/issues/7291
 - Latency regressions: https://github.com/openai/codex/issues/24422, https://github.com/openai/codex/issues/21527, https://github.com/openai/codex/issues/11984, https://github.com/openai/codex/issues/12161
 - Approval persistence and MCP approval friction: https://github.com/openai/codex/issues/4212, https://github.com/openai/codex/issues/13476, https://github.com/openai/codex/issues/2998
+- Config and Preferences drift: https://github.com/openai/codex/issues/25440, https://github.com/openai/codex/issues/25442, https://github.com/openai/codex/issues/20538, https://github.com/openai/codex/issues/24963
 - Latest-turn drift and compaction memory loss: https://github.com/openai/codex/issues/8648, https://github.com/openai/codex/issues/5957, https://github.com/openai/codex/issues/10823, https://github.com/openai/codex/issues/11626
 - Session state and resume failures: https://github.com/openai/codex/issues/25430, https://github.com/openai/codex/issues/25390, https://github.com/openai/codex/issues/25394, https://github.com/openai/codex/issues/25407
 - MCP runtime failures: https://github.com/openai/codex/issues/16685, https://github.com/openai/codex/issues/18977, https://github.com/openai/codex/issues/24297, https://github.com/openai/codex/issues/23839

package/docs/DISCOVERY.md

@@ -28,6 +28,7 @@ This page is written for maintainers, search engines, package indexes, and AI re
 - Codex mobile or remote-control appears connected but routes through stale listeners, stale enrollment, incomplete helper bundles, empty backend environments, or stale Android/iOS session state.
 - Codex MCP tools are visible in `tools/list` but fail at runtime because approval is cancelled, elicitation is unsupported in exec mode, namespace or `serverName` metadata is dropped, routed names become `unsupported call`, or stdio transport closes.
 - Codex approval flow repeatedly prompts after `Approve for this session`, forgets a safe approval scope, or forces large trusted MCP servers into noisy per-tool approval configs.
+- Codex config drift makes Preferences unable to save, pins an unavailable model, points `default_permissions` at a missing profile, enables Windows elevated sandbox mode, or references plugin cache entries that are missing on disk.
 - Codex Desktop file tree, folder icon, floating file panel, or built-in file preview disappears, goes stale, or cannot be revealed by `View > Toggle File Tree`.
 - Codex resume, Desktop history rendering, archived chats, context compression, or local state migrations fail after large JSONL histories, images, tool output, stale SQLite state, short `session_index.jsonl`, or project/thread metadata drift.
 - Codex model or runtime latency regresses so GPT-5.5 Fast feels like Standard, simple tasks take 10-20+ minutes, thinking stalls, or search/read/compaction phases dominate the session.
@@ -61,6 +62,7 @@ npx trace-to-skill scorecard .
 npx trace-to-skill lint-agents .
 npx trace-to-skill guard-github-event "$GITHUB_EVENT_PATH"
 npx trace-to-skill session-audit ~/.codex --format json
+npx trace-to-skill config-audit ~/.codex --format json
 npx trace-to-skill redact ./runs --output redacted-runs
 npx trace-to-skill analyze ./runs --format json
 npx trace-to-skill codex-report ./runs --output openai-codex-issue.md
@@ -76,6 +78,7 @@ npx trace-to-skill suggest ./runs --target agents-md
 - `trace-to-skill redact --format json`
 - `trace-to-skill scorecard --format json`
 - `trace-to-skill session-audit --format json`
+- `trace-to-skill config-audit --format json`
 - SARIF from `trace-to-skill analyze --format sarif`
 - OpenAI/Codex issue-ready Markdown from `trace-to-skill codex-report`
 - Packaged zero-setup Codex issue-report demo from `trace-to-skill demo`
@@ -92,11 +95,12 @@ npx trace-to-skill suggest ./runs --target agents-md
 - `schemas/scorecard-result.schema.json`
 - `schemas/oss-brief-result.schema.json`
 - `schemas/patch-guard-result.schema.json`
+- `schemas/config-audit-result.schema.json`
 - `schemas/session-audit-result.schema.json`
 
 ## Related Keywords
 
-Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex CLI, Codex sandbox, Windows sandbox, Codex Windows helper path, Codex WindowsApps, Codex rg Access Denied, Codex ripgrep, CodexSandboxUsers, LocalCache Local OpenAI Codex bin, node_repl spawn setup refresh, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex remote compact, responses/compact, /compact timeout, tcp_user_timeout, stream_idle_timeout_ms, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session audit, Codex history audit, Codex session index, session_index.jsonl, Codex session state, rollout JSONL, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage drain, Codex usage reset, Codex weekly reset drift, reset_at changed, deterministic reset, rate limit reset, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, apply_patch Add File overwrite, patch guard, guard-patch, Add File symlink, tool_call_id, close_agent, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
+Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex CLI, Codex sandbox, Windows sandbox, Codex config audit, Codex config.toml, Codex Preferences unable to save, configVersionConflict, default_permissions missing profile, Codex Windows helper path, Codex WindowsApps, Codex rg Access Denied, Codex ripgrep, CodexSandboxUsers, LocalCache Local OpenAI Codex bin, node_repl spawn setup refresh, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex remote compact, responses/compact, /compact timeout, tcp_user_timeout, stream_idle_timeout_ms, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session audit, Codex history audit, Codex session index, session_index.jsonl, Codex session state, rollout JSONL, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage drain, Codex usage reset, Codex weekly reset drift, reset_at changed, deterministic reset, rate limit reset, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, apply_patch Add File overwrite, patch guard, guard-patch, Add File symlink, tool_call_id, close_agent, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
 
 ## Non-Goals
 

package/docs/OPENAI_OSS_BRIEF.md

@@ -3,7 +3,7 @@
 | Field | Value |
 | --- | --- |
 | Repository | https://github.com/grnbtqdbyx-create/trace-to-skill |
-| Package | trace-to-skill@0.1.54 |
+| Package | trace-to-skill@0.1.55 |
 | License | Apache-2.0 |
 | Codex readiness | ready (100/100) |
 | Benchmark | pass, 26 cases |
@@ -27,7 +27,7 @@ API credits would power optional maintainer workflows on top of the local determ
 ## Evidence
 
 - Public repository: https://github.com/grnbtqdbyx-create/trace-to-skill
-- One-command package: npx trace-to-skill@0.1.54
+- One-command package: npx trace-to-skill@0.1.55
 - Open-source license: Apache-2.0
 - Codex readiness doctor: ready, 100/100, 0 failed checks.
 - Public fixture benchmark: pass, 26 cases.

package/docs/USE_CASES.md

@@ -42,7 +42,7 @@ What it proves:
 Recommended CI surface:
 
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.54
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.55
   with:
     mode: all
     doctor-threshold: "85"
@@ -78,10 +78,13 @@ Use this when Codex cannot start tools, apply patches, or write to the workspace
 
 ```bash
 npx trace-to-skill analyze ./runs --format json
+npx trace-to-skill config-audit ~/.codex --format json
 ```
 
 This catches signals such as Windows sandbox setup refresh failures, `os error 740`, `CodexSandboxOffline` ownership drift, ACL denial, approval-policy mismatch, and Full Access sessions behaving like workspace-write or on-request mode.
 
+`config-audit` is local and read-only: it summarizes `config.toml` model pins, `sandbox_mode`, `approval_policy`, `[windows].sandbox`, missing `default_permissions` profiles, deprecated `codex_hooks`, machine-local project trust entries, enabled plugins with missing cache directories, and large per-tool MCP approval configs.
+
 ## 5. Codex Auth And Connectivity Triage
 
 Use this when Codex cannot log in, exchange an auth token, stream a response, or connect through a container, proxy, VPN, corporate CA, IPv6 network, or Cloudflare challenge.
@@ -128,6 +131,7 @@ Use this when MCP tools are configured and visible, but Codex cannot actually ca
 
 ```bash
 npx trace-to-skill analyze ./runs --format json
+npx trace-to-skill config-audit ~/.codex --format json
 ```
 
 This catches signals such as `user cancelled MCP tool call`, `request_user_input is not supported in exec mode`, `Approve app tool call?`, `tool_call_mcp_elicitation`, routed callable names like `mcp__node_repl__js` becoming `unsupported call`, deferred discovery dropping namespace or `serverName`, `tools/list` succeeding while Codex routing fails, and stdio transport lifecycle failures such as `Transport closed`, `stdin_end`, `stdin_close`, `transport_close`, or stderr backpressure.

package/llms.txt

@@ -19,6 +19,7 @@ Runtime: Node.js 20+
 - Codex Windows helper path failures such as bundled `rg.exe`, `node_repl.exe`, Browser, Chrome, or Computer Use helpers resolving through blocked WindowsApps/MSIX package paths, missing `%LOCALAPPDATA%\OpenAI\Codex\bin`, broken LocalCache helper bins, `CodexSandboxUsers` ACL gaps, EFS/copyfile failures, and `missing-helper-path`
 - Codex patch safety failures such as `apply_patch` accepting `*** Add File` for an existing path, misleading `A <path>` summaries, symlink target replacement, and missing preflight checks before generated patches touch the workspace
 - Codex sandbox and permission failures such as setup refresh errors, `os error 740`, `CodexSandboxOffline` ownership drift, ACL denial, and approval-mode downgrades
+- Codex config drift such as Preferences `Unable to save`, `configVersionConflict`, stale model pins, missing permission profiles, Windows elevated sandbox mode, plugin cache drift, and MCP approval sprawl
 - Codex auth and connectivity failures such as `token_exchange_failed`, `auth.openai.com/oauth/token`, missing `ca-certificates`, proxy or MITM TLS behavior, IPv6 fallback problems, Cloudflare challenge responses, and ChatGPT stream disconnects
 - Codex mobile and remote-control route health failures such as `Waiting for desktop`, `Directory Unavailable`, stale listeners on `127.0.0.1:14567`, stale `server_name` enrollment, empty backend environments, and incomplete helper bundles
 - Codex MCP runtime failures such as cancelled non-interactive approvals, `request_user_input is not supported in exec mode`, dropped namespace or `serverName` metadata, `unsupported call: mcp__...__...`, and closed `StdioServerTransport` sessions
@@ -66,6 +67,7 @@ npx trace-to-skill lint-agents .
 npx trace-to-skill guard-github-event "$GITHUB_EVENT_PATH"
 npx trace-to-skill guard-patch ./change.patch --root .
 npx trace-to-skill session-audit ~/.codex --format json
+npx trace-to-skill config-audit ~/.codex --format json
 npx trace-to-skill redact ./runs --output redacted-runs
 npx trace-to-skill analyze ./runs
 npx trace-to-skill codex-report ./runs --output openai-codex-issue.md
@@ -79,7 +81,7 @@ npx trace-to-skill init --comment --sarif
 ## GitHub Action
 
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.54
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.55
   with:
     mode: all
     doctor-threshold: "85"
@@ -97,6 +99,7 @@ npx trace-to-skill init --comment --sarif
 - Redaction JSON schema: https://github.com/grnbtqdbyx-create/trace-to-skill/blob/main/schemas/redact-result.schema.json
 - Scorecard JSON schema: https://github.com/grnbtqdbyx-create/trace-to-skill/blob/main/schemas/scorecard-result.schema.json
 - Patch guard JSON schema: https://github.com/grnbtqdbyx-create/trace-to-skill/blob/main/schemas/patch-guard-result.schema.json
+- Config audit JSON schema: https://github.com/grnbtqdbyx-create/trace-to-skill/blob/main/schemas/config-audit-result.schema.json
 - Session audit JSON schema: https://github.com/grnbtqdbyx-create/trace-to-skill/blob/main/schemas/session-audit-result.schema.json
 
 ## Search phrases this project should answer
@@ -124,6 +127,9 @@ npx trace-to-skill init --comment --sarif
 - Codex apply_patch Add File overwrites existing file
 - Codex patch guard for generated patches
 - trace-to-skill guard-patch Add File symlink
+- Codex config-audit for config.toml diagnostics
+- Codex Preferences unable to save configVersionConflict
+- Codex Windows elevated sandbox node_repl spawn setup refresh
 - Codex ca-certificates update-ca-certificates Dev Container
 - Codex remote-control stale listener 127.0.0.1:14567
 - Codex mobile Waiting for desktop Directory Unavailable

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "trace-to-skill",
-  "version": "0.1.54",
+  "version": "0.1.55",
   "description": "Turn failed AI coding-agent runs into reusable AGENTS.md rules, SKILL.md files, and eval evidence.",
   "type": "module",
   "main": "dist/src/index.js",
@@ -71,6 +71,8 @@
     "gpt-5-5",
     "codex-approval",
     "mcp-approval",
+    "codex-config-audit",
+    "codex-config",
     "sandbox-permission",
     "codex-sandbox",
     "windows-sandbox",

package/schemas/config-audit-result.schema.json

@@ -0,0 +1,125 @@
+{
+  "$schema": "https://json-schema.org/draft/2020-12/schema",
+  "$id": "https://github.com/grnbtqdbyx-create/trace-to-skill/schemas/config-audit-result.schema.json",
+  "title": "trace-to-skill Codex config audit result",
+  "type": "object",
+  "additionalProperties": false,
+  "required": ["generatedAt", "target", "configPath", "status", "summary", "values", "findings"],
+  "properties": {
+    "generatedAt": {
+      "type": "string",
+      "format": "date-time"
+    },
+    "target": {
+      "type": "string"
+    },
+    "configPath": {
+      "type": "string"
+    },
+    "status": {
+      "type": "string",
+      "enum": ["pass", "warn", "fail"]
+    },
+    "summary": {
+      "$ref": "#/$defs/summary"
+    },
+    "values": {
+      "$ref": "#/$defs/values"
+    },
+    "findings": {
+      "type": "array",
+      "items": {
+        "$ref": "#/$defs/finding"
+      }
+    }
+  },
+  "$defs": {
+    "summary": {
+      "type": "object",
+      "additionalProperties": false,
+      "required": ["exists", "sizeBytes", "topLevelKeys", "sections", "mcpServers", "pluginSections"],
+      "properties": {
+        "exists": {
+          "type": "boolean"
+        },
+        "sizeBytes": {
+          "type": "integer",
+          "minimum": 0
+        },
+        "topLevelKeys": {
+          "type": "array",
+          "items": {
+            "type": "string"
+          }
+        },
+        "sections": {
+          "type": "array",
+          "items": {
+            "type": "string"
+          }
+        },
+        "mcpServers": {
+          "type": "integer",
+          "minimum": 0
+        },
+        "pluginSections": {
+          "type": "integer",
+          "minimum": 0
+        }
+      }
+    },
+    "values": {
+      "type": "object",
+      "additionalProperties": false,
+      "properties": {
+        "model": {
+          "type": "string"
+        },
+        "approvalPolicy": {
+          "type": "string"
+        },
+        "sandboxMode": {
+          "type": "string"
+        },
+        "windowsSandbox": {
+          "type": "string"
+        },
+        "defaultPermissions": {
+          "type": "string"
+        }
+      }
+    },
+    "finding": {
+      "type": "object",
+      "additionalProperties": false,
+      "required": ["severity", "kind", "message"],
+      "properties": {
+        "severity": {
+          "type": "string",
+          "enum": ["warning", "error"]
+        },
+        "kind": {
+          "type": "string",
+          "enum": [
+            "missing_config",
+            "model_pin",
+            "danger_full_access",
+            "windows_elevated_sandbox",
+            "default_permissions_missing",
+            "deprecated_codex_hooks",
+            "machine_local_project_state",
+            "plugin_cache_missing",
+            "mcp_approval_sprawl"
+          ]
+        },
+        "line": {
+          "type": "integer",
+          "minimum": 1
+        },
+        "message": {
+          "type": "string"
+        }
+      }
+    }
+  }
+}