trace-to-skill 0.1.48 → 0.1.49

package/README.md

@@ -58,6 +58,7 @@ Use it when you need to:
 - **Prove remote-control route health:** run `trace-to-skill analyze ./runs` when Codex mobile/remote sessions show `Waiting for desktop`, `Directory Unavailable`, stale listener/cache, missing helper bundle, or stale enrollment symptoms.
 - **Triage Codex MCP runtime failures:** run `trace-to-skill analyze ./runs` when MCP tools are listed but Codex cancels approval, drops namespace/serverName metadata, routes to `unsupported call`, or closes stdio transport.
 - **Debug Codex plugin runtime failures:** run `trace-to-skill analyze ./runs` when Browser, Computer Use, Chrome, connectors, or bundled plugins are advertised but fail with missing native pipe paths, plugin-list schema errors, or stale plugin cache state.
+- **Report Codex file tree UI failures:** run `trace-to-skill analyze ./runs` when `View > Toggle File Tree`, the folder icon, floating file panel, or built-in file preview disappears, goes stale, or stops revealing workspace files.
 - **Debug Codex resume/session state:** run `trace-to-skill analyze ./runs` when `codex resume` freezes, large JSONL histories make Desktop sluggish, recent context disappears after resume, or SQLite migration/state errors break goals.
 - **Attribute token burn:** run `trace-to-skill analyze ./runs` when Codex drains usage unexpectedly because of background polling, idle app activity, compaction loops, retry spirals, fast-mode drift, or cached-token-heavy turns.
 - **Report resource leaks:** run `trace-to-skill analyze ./runs` when Codex Desktop, VS Code extension, app-server, renderer, GPU, or orphaned helper processes keep burning CPU/GPU/memory after the work should be idle.
@@ -163,6 +164,7 @@ Trace analysis detects run-level failures:
 | Codex remote control | Mobile or remote sessions route through stale listeners, stale enrollment, or incomplete helper bundles |
 | Codex MCP runtime | MCP tools are configured but approval, namespace routing, unsupported callable names, or stdio transport fail at runtime |
 | Codex plugin runtime | Browser, Computer Use, Chrome, connectors, or bundled plugins are advertised but fail because helper paths, plugin-list schemas, or cache state drift |
+| Codex file tree UI | Desktop file tree, floating file panel, or file preview cannot be revealed, refreshes stale entries, or loses workspace navigation |
 | Codex session state | Resume, history rendering, context compression, archived chats, or local SQLite/global-state migrations break long sessions |
 | Codex token burn | Background polling, idle app activity, compaction/replay, cached-token-heavy turns, or retry loops drain usage unexpectedly |
 | Codex resource leak | Desktop/app/extension/helper processes, shell snapshots, renderer, GPU, or log loops keep consuming local resources |
@@ -392,7 +394,7 @@ jobs:
       issues: write
     steps:
       - uses: actions/checkout@v5
-      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.48
+      - uses: grnbtqdbyx-create/trace-to-skill@v0.1.49
         with:
           mode: all
           doctor-threshold: "85"
@@ -441,7 +443,7 @@ Composite action usage:
 
 ```yaml
 - id: trace-to-skill
-  uses: grnbtqdbyx-create/trace-to-skill@v0.1.48
+  uses: grnbtqdbyx-create/trace-to-skill@v0.1.49
   with:
     mode: all
     doctor-threshold: "85"
@@ -483,7 +485,7 @@ Action outputs:
 
 By default, generated reports are also appended to the GitHub Actions Job Summary. Set `job-summary: "false"` to disable that UI output.
 
-Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.48` executes that release's checked-out source instead of pulling the default branch at runtime.
+Tagged Action releases build and run the CLI from `$GITHUB_ACTION_PATH`, so a workflow pinned to a release tag such as `@v0.1.49` executes that release's checked-out source instead of pulling the default branch at runtime.
 
 ## Codex Skill
 
@@ -532,6 +534,7 @@ The goal is not to let agents autonomously rewrite project policy. The goal is t
 - GitHub Action `benchmark` and `all` modes
 - `trace-to-skill scorecard` for combined reviewer proof
 - `trace-to-skill oss-brief` for OpenAI OSS application-ready evidence
+- Codex file tree and workspace navigation UI failure detection
 - Scorecard JSON schema and Action outputs
 - Tag-pinned GitHub Action runtime via `$GITHUB_ACTION_PATH`
 - Scorecard PR comments with update-in-place marker

package/dist/src/benchmark.js

@@ -96,6 +96,12 @@ const BENCHMARK_CASES = [
         fixture: "fixtures/codex-plugin-runtime.md",
         expectedKinds: ["codex_plugin_runtime", "weak_evidence"]
     },
+    {
+        id: "codex-file-tree-ui",
+        title: "Codex file tree and workspace navigation UI failure",
+        fixture: "fixtures/codex-file-tree-ui.md",
+        expectedKinds: ["codex_file_tree_ui", "weak_evidence"]
+    },
     {
         id: "codex-session-state",
         title: "Codex session resume and state failure",

package/dist/src/benchmark.js.map

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package/dist/src/demo.js

@@ -32,6 +32,12 @@ const DEMO_SCENARIOS = [
         title: "GitHub prompt injection",
         fixture: "fixtures/prompt-injection.md",
         description: "Untrusted issue, PR, comment, or web text tells the agent to ignore policy or leak secrets."
+    },
+    {
+        id: "file-tree-ui",
+        title: "Codex file tree UI failure",
+        fixture: "fixtures/codex-file-tree-ui.md",
+        description: "Desktop file tree, floating file panel, or file preview disappears, goes stale, or cannot be revealed."
     }
 ];
 export function listDemoScenarios() {
@@ -51,6 +57,9 @@ export async function runDemo(scenarioId = "approval-friction") {
     };
 }
 export function renderDemoMarkdown(result) {
+    const otherScenarios = DEMO_SCENARIOS
+        .filter((scenario) => scenario.id !== result.scenario.id)
+        .map((scenario) => `- \`${scenario.id}\`: ${scenario.description}`);
     return [
         "# trace-to-skill Demo",
         "",
@@ -64,7 +73,17 @@ export function renderDemoMarkdown(result) {
         "",
         "## Generated Codex Issue Report",
         "",
-        renderCodexIssueReport(result.analysis).replace(/^# OpenAI Codex Issue Report\n\n/, "")
+        renderCodexIssueReport(result.analysis).replace(/^# OpenAI Codex Issue Report\n\n/, ""),
+        "",
+        "## Other Demo Scenarios",
+        "",
+        ...otherScenarios,
+        "",
+        "```bash",
+        "trace-to-skill demo --list",
+        "trace-to-skill demo file-tree-ui",
+        "```",
+        ""
     ].join("\n");
 }
 export function renderDemoScenarioList(scenarios = listDemoScenarios()) {

package/dist/src/demo.js.map

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package/dist/src/rules.js

@@ -300,6 +300,23 @@ const RULES = [
         suggestedRule: "When reporting Codex plugin runtime failures, capture app version, OS, plugin name and version, plugin cache path, helper binary/client path, native pipe or helper env vars, plugin/list or settings error text, connector install return flow, cache reconciliation/file-lock logs, whether the UI still lists the plugin, whether restarting resets or downgrades it, and whether a clean profile reproduces the failure.",
         suggestedSkill: "codex-plugin-runtime-triage"
     },
+    {
+        kind: "codex_file_tree_ui",
+        severity: "high",
+        title: "Codex file tree or workspace navigation UI failure",
+        why: "When the Codex Desktop file tree, floating file panel, or file preview disappears, users lose deterministic workspace navigation and cannot inspect project structure or changed files without model-generated links.",
+        patterns: [
+            /\b(View\s*>\s*Toggle File Tree|Toggle File Tree|toggle file tree|toggleFileTreePanel|toggle-file-tree-panel)\b.{0,180}\b(enabled|menu|shortcut|Cmd\+Shift\+E|Shift\+Cmd\+E|Ctrl\+Shift\+E|does nothing|no visible change|not working|does not reveal|fails?)\b/i,
+            /\b(file tree|file-tree|project tree|workspace tree)\b.{0,180}\b(does not appear|does not open|does not reveal|not visible|invisible|missing|gone|hidden|unavailable|unusable|not working|fails? to open)\b/i,
+            /\b(folder icon|file tree icon|upper-right file tree icon|floating file panel)\b.{0,180}\b(gone|missing|does not appear|stale|not refreshed|unclickable|fails?|no visible change)\b/i,
+            /\b(file preview|previewer|built-in file preview)\b.{0,180}\b(fails? to open|stops? opening|blank|stale|restart(?:ing)? fixes|document files?|pdf|ppt|doc)\b/i,
+            /\b(move|rename|delete|add)\b.{0,120}\b(files?)\b.{0,160}\b(floating panel|file tree|file panel)\b.{0,160}\b(stale|not refresh|unclickable|old entries)\b/i,
+            /\b(no reliable|deterministic)\b.{0,120}\b(reveal|open|show|inspect)\b.{0,120}\b(file tree|workspace|project structure|file navigation)\b/i,
+            /\b(app-shell:right-panel-width|right-panel-width)\b.{0,160}\b(file tree|toggle|sidebar|panel|does not fix)\b/i
+        ],
+        suggestedRule: "When reporting Codex file-tree or workspace navigation UI failures, capture app version, OS, workspace attachment state, menu item and shortcut used, whether the file-tree icon or floating file panel is visible, sidebar/panel persisted-state keys changed, file add/rename/delete refresh behavior, file preview failures by extension, screenshots or screen recording, and whether restart, clean profile, or a new workspace changes the result.",
+        suggestedSkill: "codex-file-tree-ui-triage"
+    },
     {
         kind: "codex_session_state",
         severity: "high",

package/dist/src/rules.js.map

@@ -1 +1 @@
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package/dist/src/types.d.ts

@@ -1,5 +1,5 @@
 export type Severity = "low" | "medium" | "high" | "critical";
-export type FindingKind = "premature_completion" | "tests_not_run" | "test_failure" | "ignored_instruction" | "hallucinated_file" | "over_editing" | "unsafe_command" | "secret_exposure" | "sensitive_file_access" | "hidden_unicode" | "prompt_injection" | "context_compaction" | "codex_latest_turn_drift" | "codex_latency_regression" | "codex_approval_friction" | "sandbox_permission" | "codex_connectivity" | "codex_remote_control" | "codex_mcp_runtime" | "codex_plugin_runtime" | "codex_session_state" | "codex_token_burn" | "codex_resource_leak" | "codex_tool_call_integrity" | "quota_mismatch" | "mcp_risk" | "weak_evidence";
+export type FindingKind = "premature_completion" | "tests_not_run" | "test_failure" | "ignored_instruction" | "hallucinated_file" | "over_editing" | "unsafe_command" | "secret_exposure" | "sensitive_file_access" | "hidden_unicode" | "prompt_injection" | "context_compaction" | "codex_latest_turn_drift" | "codex_latency_regression" | "codex_approval_friction" | "sandbox_permission" | "codex_connectivity" | "codex_remote_control" | "codex_mcp_runtime" | "codex_plugin_runtime" | "codex_file_tree_ui" | "codex_session_state" | "codex_token_burn" | "codex_resource_leak" | "codex_tool_call_integrity" | "quota_mismatch" | "mcp_risk" | "weak_evidence";
 export interface TraceInput {
     path: string;
     content: string;

package/docs/BENCHMARK.md

@@ -21,6 +21,7 @@ This benchmark runs the public fixture pack that ships with the repository and p
 | Sensitive file access in agent context | `fixtures/sensitive-file-access.md` | 75 | 2 | 0 | `sensitive_file_access`, `weak_evidence` | pass |
 | Codex MCP runtime failure | `fixtures/codex-mcp-runtime.md` | 75 | 2 | 0 | `codex_mcp_runtime`, `weak_evidence` | pass |
 | Codex plugin runtime and bundled capability failure | `fixtures/codex-plugin-runtime.md` | 75 | 2 | 0 | `codex_plugin_runtime`, `weak_evidence` | pass |
+| Codex file tree and workspace navigation UI failure | `fixtures/codex-file-tree-ui.md` | 75 | 2 | 0 | `codex_file_tree_ui`, `weak_evidence` | pass |
 | Codex session resume and state failure | `fixtures/codex-session-state.md` | 59 | 3 | 0 | `codex_resource_leak`, `codex_session_state`, `weak_evidence` | pass |
 | Codex token burn and usage-drain loop | `fixtures/codex-token-burn.md` | 59 | 3 | 0 | `codex_resource_leak`, `codex_token_burn`, `weak_evidence` | pass |
 | Codex resource leak and runaway process | `fixtures/codex-resource-leak.md` | 75 | 2 | 0 | `codex_resource_leak`, `weak_evidence` | pass |

package/docs/CODEX_ISSUE_MAP.md

@@ -31,6 +31,7 @@ npx trace-to-skill codex-report redacted-runs --output openai-codex-issue.md
 | Remote-control routing failures | `Waiting for desktop`, `Directory: Unavailable`, stale listener/enrollment, `127.0.0.1:14567`, empty backend environments | `codex_remote_control` | `trace-to-skill codex-report ./runs` |
 | MCP runtime failures | `user cancelled MCP tool call`, `unsupported call: mcp__...__...`, namespace/serverName loss, `Transport closed` | `codex_mcp_runtime` | `trace-to-skill codex-report ./runs` |
 | Plugin runtime and bundled capability failures | Computer Use native pipe path unavailable, Browser/Computer Use settings fail, plugin/list `unknown variant 'vertical'`, stale plugin cache downgrades | `codex_plugin_runtime` | `trace-to-skill codex-report ./runs` |
+| File tree and workspace navigation UI failures | `View > Toggle File Tree` does nothing, folder icon disappears, floating file panel is stale, file preview stops opening documents | `codex_file_tree_ui` | `trace-to-skill codex-report ./runs` |
 | MCP config risk | filesystem/shell/browser/network/database/container access, secret-bearing env vars, broken startup inputs | `mcp_risk` | `trace-to-skill lint-agents .` |
 | GitHub prompt injection | issue/PR/comment text says to ignore policy, leak secrets, hide actions, or execute attacker-controlled commands | `prompt_injection` | `trace-to-skill guard-github-event "$GITHUB_EVENT_PATH"` |
 
@@ -45,6 +46,7 @@ npx trace-to-skill codex-report redacted-runs --output openai-codex-issue.md
 - Include pre-first-token, thinking, tool, search, read, and compaction timings plus model/speed settings for latency regressions.
 - Include selected approval scope, displayed vs executed command, MCP server/tool names, visible args, repeated prompt count, and config snippets for approval-friction reports.
 - Include plugin name/version, cache path, helper path, native pipe env vars, settings/plugin-list errors, and restart behavior for plugin runtime failures.
+- Include app version, OS, screenshot or screen recording, menu/shortcut used, workspace attachment state, file-tree icon visibility, floating-panel refresh behavior, file preview extension, and persisted panel-state keys for file-tree UI failures.
 - Include the latest user request, stale earlier prompt/response, compaction timing, context size, and feedback/thread id for latest-turn drift.
 - Include line-linked evidence rather than screenshots alone when logs are available.
 - Redact tokens, API keys, emails, local home paths, customer data, and hidden Unicode before posting publicly.
@@ -61,5 +63,6 @@ npx trace-to-skill codex-report redacted-runs --output openai-codex-issue.md
 - Session state and resume failures: https://github.com/openai/codex/issues/25430, https://github.com/openai/codex/issues/25390, https://github.com/openai/codex/issues/25394, https://github.com/openai/codex/issues/25407
 - MCP runtime failures: https://github.com/openai/codex/issues/16685, https://github.com/openai/codex/issues/18977, https://github.com/openai/codex/issues/24297, https://github.com/openai/codex/issues/23839
 - Plugin runtime and bundled capability failures: https://github.com/openai/codex/issues/25391, https://github.com/openai/codex/issues/25418, https://github.com/openai/codex/issues/25406, https://github.com/openai/codex/issues/18258
+- File tree and workspace navigation UI failures: https://github.com/openai/codex/issues/20552
 - Sensitive file exclusion: https://github.com/openai/codex/issues/2847
 - Auth/connectivity and remote-control reports are represented by the public fixtures in `fixtures/codex-connectivity.md` and `fixtures/codex-remote-control.md`.

package/docs/DEMO.md

@@ -90,3 +90,17 @@ Suggested rule:
 - Prefer the shortest trace that reproduces the failure.
 - Include exact Codex app/CLI version, OS, model, subscription/workspace, and the command or UI action that failed.
 - Link related OpenAI/Codex issues when you know them, but keep the evidence self-contained.
+
+
+## Other Demo Scenarios
+
+- `latency-regression`: Fast mode feels like Standard, with long thinking, search, read, or compaction stalls.
+- `token-burn`: Usage drains from background polling, idle activity, compaction loops, retries, or cached-heavy turns.
+- `sensitive-files`: Secrets, local credentials, production env files, or private databases enter agent context.
+- `github-prompt-injection`: Untrusted issue, PR, comment, or web text tells the agent to ignore policy or leak secrets.
+- `file-tree-ui`: Desktop file tree, floating file panel, or file preview disappears, goes stale, or cannot be revealed.
+
+```bash
+trace-to-skill demo --list
+trace-to-skill demo file-tree-ui
+```

package/docs/DISCOVERY.md

@@ -27,6 +27,7 @@ This page is written for maintainers, search engines, package indexes, and AI re
 - Codex mobile or remote-control appears connected but routes through stale listeners, stale enrollment, incomplete helper bundles, empty backend environments, or stale Android/iOS session state.
 - Codex MCP tools are visible in `tools/list` but fail at runtime because approval is cancelled, elicitation is unsupported in exec mode, namespace or `serverName` metadata is dropped, routed names become `unsupported call`, or stdio transport closes.
 - Codex approval flow repeatedly prompts after `Approve for this session`, forgets a safe approval scope, or forces large trusted MCP servers into noisy per-tool approval configs.
+- Codex Desktop file tree, folder icon, floating file panel, or built-in file preview disappears, goes stale, or cannot be revealed by `View > Toggle File Tree`.
 - Codex resume, Desktop history rendering, archived chats, context compression, or local state migrations fail after large JSONL histories, images, tool output, stale SQLite state, or project/thread metadata drift.
 - Codex model or runtime latency regresses so GPT-5.5 Fast feels like Standard, simple tasks take 10-20+ minutes, thinking stalls, or search/read/compaction phases dominate the session.
 - Codex usage drains unexpectedly because of background `write_stdin` polling, idle app activity, compaction/replay overhead, retry loops, subagent fan-out, fast-mode drift, or cached-token-heavy turns.
@@ -88,7 +89,7 @@ npx trace-to-skill suggest ./runs --target agents-md
 
 ## Related Keywords
 
-Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex CLI, Codex sandbox, Windows sandbox, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session state, rollout JSONL, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage drain, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, tool_call_id, close_agent, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
+Codex, OpenAI Codex, Codex issue report, OpenAI triage, Codex CLI, Codex sandbox, Windows sandbox, Codex approval friction, Approve for this session, Allow for this session, approval_policy never, MCP approval prompts, default_tools_approval_mode, Playwright MCP approvals, Chrome DevTools MCP approvals, Codex auth, token_exchange_failed, Codex connectivity, stream disconnected, Codex remote control, Codex mobile, Waiting for desktop, Directory Unavailable, stale listener, Codex MCP runtime, MCP unsupported call, mcp__node_repl__js, MCP namespace serverName, MCP Transport closed, StdioServerTransport, Codex plugin runtime, Computer Use native pipe path unavailable, SKY_CUA_NATIVE_PIPE_DIRECTORY, Plugin loading failed, plugin/list unknown variant vertical, Codex Browser plugin, Codex Computer Use, Codex Chrome plugin, stale plugin cache, codex plugin add, Codex file tree, Toggle File Tree, missing folder icon, floating file panel stale, file preview fails, workspace navigation, Codex latest-turn drift, Codex replies to earlier messages, stale prompt response, ignoring latest message, previous prompt, auto compaction forgets edits, raw tool payload leak, write_stdin session_id, Codex latency regression, GPT-5.5 Fast slow, Codex too slow, thinking stalls, pre-first-token latency, search/read latency, runtime scheduling latency, Codex resume, Codex session state, rollout JSONL, thread_goals, state_5.sqlite, goals_1.sqlite, archived chats, Codex token burn, Codex usage drain, write_stdin polling, cached input tokens, compaction tax, background process polling, Codex resource leak, Codex performance, high CPU, high GPU, shell-snapshot, Code Helper Renderer, Codex tool-call integrity, apply_patch, tool_call_id, close_agent, failed revert changes, patch safety, Codex quota, usage limit, rate limits, sensitive files, Codex privacy, .env, private keys, credential files, AGENTS.md, SKILL.md, Claude Code, Cursor, Copilot coding agent, Gemini CLI, MCP, Model Context Protocol, prompt injection, agent evals, AI code review, open-source maintainers, trace redaction, SARIF, GitHub Actions.
 
 ## Non-Goals
 

package/docs/OPENAI_OSS_BRIEF.md

@@ -3,18 +3,18 @@
 | Field | Value |
 | --- | --- |
 | Repository | https://github.com/grnbtqdbyx-create/trace-to-skill |
-| Package | trace-to-skill@0.1.48 |
+| Package | trace-to-skill@0.1.49 |
 | License | Apache-2.0 |
 | Codex readiness | ready (100/100) |
-| Benchmark | pass, 21 cases |
+| Benchmark | pass, 22 cases |
 
 ## Why This Repository Qualifies
 
-trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 21 public fixture cases.
+trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 22 public fixture cases.
 
 ### 500-Character Version
 
-> trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 21 public fixture cases.
+> trace-to-skill helps open-source maintainers adopt Codex safely by turning failed coding-agent runs into evidence-backed rules, reusable workflows, and CI gates. It supports real maintenance work: PR review, issue triage, release quality, MCP risk, prompt-injection defense, privacy-preserving trace sharing, and repeat failure reduction. The repository is ready, scores 100/100 on the local Codex readiness doctor, and ships a deterministic benchmark with 22 public fixture cases.
 
 ## How API Credits Would Be Used
 
@@ -27,10 +27,10 @@ API credits would power optional maintainer workflows on top of the local determ
 ## Evidence
 
 - Public repository: https://github.com/grnbtqdbyx-create/trace-to-skill
-- One-command package: npx trace-to-skill@0.1.48
+- One-command package: npx trace-to-skill@0.1.49
 - Open-source license: Apache-2.0
 - Codex readiness doctor: ready, 100/100, 0 failed checks.
-- Public fixture benchmark: pass, 21 cases.
+- Public fixture benchmark: pass, 22 cases.
 - Maintainer control: generated rules are suggestions, evidence is line-linked, and secrets can be redacted before sharing.
 
 ## Next Steps Before Submitting

package/docs/RELEASE.md

@@ -41,7 +41,7 @@ npx npm@11.16.0 trust github trace-to-skill \
 2. Run `npm run check`.
 3. Regenerate `docs/BENCHMARK.md` and `docs/SCORECARD.md` if benchmark fixtures changed.
 4. Commit and push to `main`.
-5. Create a GitHub release whose tag matches the package version, such as `v0.1.48`.
+5. Create a GitHub release whose tag matches the package version, such as `v0.1.49`.
 6. Confirm the `Publish npm` workflow succeeds.
 7. Confirm `npm view trace-to-skill version dist-tags.latest --json` shows the new version.
 

package/docs/SCORECARD.md

@@ -9,7 +9,7 @@ Status: **pass**
 | Failed doctor checks | 0 |
 | Critical findings | 0 |
 | Built-in benchmark | pass |
-| Benchmark cases | 21 |
+| Benchmark cases | 22 |
 
 ## Doctor Summary
 
@@ -38,6 +38,7 @@ This benchmark runs the public fixture pack that ships with the repository and p
 | Sensitive file access in agent context | `fixtures/sensitive-file-access.md` | 75 | 2 | 0 | `sensitive_file_access`, `weak_evidence` | pass |
 | Codex MCP runtime failure | `fixtures/codex-mcp-runtime.md` | 75 | 2 | 0 | `codex_mcp_runtime`, `weak_evidence` | pass |
 | Codex plugin runtime and bundled capability failure | `fixtures/codex-plugin-runtime.md` | 75 | 2 | 0 | `codex_plugin_runtime`, `weak_evidence` | pass |
+| Codex file tree and workspace navigation UI failure | `fixtures/codex-file-tree-ui.md` | 75 | 2 | 0 | `codex_file_tree_ui`, `weak_evidence` | pass |
 | Codex session resume and state failure | `fixtures/codex-session-state.md` | 59 | 3 | 0 | `codex_resource_leak`, `codex_session_state`, `weak_evidence` | pass |
 | Codex token burn and usage-drain loop | `fixtures/codex-token-burn.md` | 59 | 3 | 0 | `codex_resource_leak`, `codex_token_burn`, `weak_evidence` | pass |
 | Codex resource leak and runaway process | `fixtures/codex-resource-leak.md` | 75 | 2 | 0 | `codex_resource_leak`, `weak_evidence` | pass |

package/docs/USE_CASES.md

@@ -39,7 +39,7 @@ What it proves:
 Recommended CI surface:
 
 ```yaml
-- uses: grnbtqdbyx-create/trace-to-skill@v0.1.48
+- uses: grnbtqdbyx-create/trace-to-skill@v0.1.49
   with:
     mode: all
     doctor-threshold: "85"
@@ -119,7 +119,18 @@ npx trace-to-skill analyze ./runs --format json
 
 This catches signals such as `codex resume` picker hangs, `codex resume <id>` working while the picker freezes, large `rollout-*.jsonl` histories, high JSONL line and `response_item` / `event_msg` / `function_call` counts, large `input_image` payloads, slow `thread/resume` and `thread/goal/get` timings, `Could not load archived chats`, resume compression dropping the last 3-5 turns, `state_5.sqlite` / `goals_1.sqlite` migration mismatches, `no such table: thread_goals`, stale `projectless-thread-ids`, and `thread-workspace-root-hints` reverting after restart.
 
-## 9. Codex Token Burn Attribution
+## 9. Codex File Tree UI Evidence
+
+Use this when Codex Desktop cannot reveal project files through the native file tree, folder icon, floating file panel, or built-in preview.
+
+```bash
+npx trace-to-skill analyze ./runs --format json
+npx trace-to-skill codex-report ./runs --output openai-codex-issue.md
+```
+
+This catches signals such as `View > Toggle File Tree` doing nothing, `Cmd+Shift+E` or `Ctrl+Shift+E` having no visible effect, the folder icon disappearing, the floating file panel showing stale or unclickable entries after add/rename/delete operations, and `.doc`, `.pdf`, or `.ppt` previews failing until restart.
+
+## 10. Codex Token Burn Attribution
 
 Use this when Codex usage drains faster than expected and the trace needs to separate useful model work from orchestration overhead.
 
@@ -130,7 +141,7 @@ npx trace-to-skill codex-report ./runs --output openai-codex-issue.md
 
 This catches signals such as tokens `burning very fast`, usage dropping by visible percentages after one or two prompts, weekly allowance depletion, 5-hour usage reaching 0%, large `input` plus `cached input` totals, `write_stdin` empty polling, background commands repeatedly reporting no new output, idle app usage, compaction tax, retry/tool loops, and missing attribution between normal turns, compaction, background polling, subagents, and retries.
 
-## 10. Quota And Usage-Limit Evidence
+## 11. Quota And Usage-Limit Evidence
 
 Use this when Codex blocks a prompt with a usage-limit message but another surface still shows remaining quota.
 
@@ -140,7 +151,7 @@ npx trace-to-skill analyze ./runs --format json
 
 This catches traces where `/status` or the usage page shows remaining 5h or weekly quota, accounts appear to share limits unexpectedly, a Team account inherits a Plus account's limit state, or quota reset times jump after logout/login.
 
-## 11. Codex Resource Leak Evidence
+## 12. Codex Resource Leak Evidence
 
 Use this when Codex Desktop, the VS Code extension, renderer, app-server, GPU process, shell snapshot, or helper process keeps burning local resources after the useful work should be idle.
 
@@ -153,7 +164,7 @@ This catches signals such as high `Code Helper (Renderer)` or `Code Helper (Plug
 
 Include process names/PIDs, CPU/GPU/RSS samples over time, log-loop snippets, workspace Git-root state, animation/reduce-motion state, and whether closing the panel/app, killing exact PIDs, `git init`, rollback, or restart clears the leak.
 
-## 12. OpenAI Codex Issue Report
+## 13. OpenAI Codex Issue Report
 
 Use this when you want to file or update an OpenAI/Codex issue with a concise, evidence-backed report instead of pasting a full transcript.
 
@@ -166,7 +177,7 @@ The report includes the likely Codex failure class, line-linked evidence, diagno
 
 For a cluster-to-command map of current Codex issue patterns, see [CODEX_ISSUE_MAP.md](CODEX_ISSUE_MAP.md).
 
-## 13. Sensitive File Access Evidence
+## 14. Sensitive File Access Evidence
 
 Use this when a trace suggests an agent read, attached, uploaded, diffed, or indexed credential-bearing files.
 
@@ -179,7 +190,7 @@ This catches signals such as `.env`, `.env.production`, `.npmrc`, `.pypirc`, `.n
 
 Before publishing evidence, run `trace-to-skill redact` and attach only redacted excerpts plus the file path/class.
 
-## 14. GitHub Context Guard
+## 15. GitHub Context Guard
 
 Use this before an agent reads untrusted GitHub text.
 
@@ -196,7 +207,7 @@ Use it when:
 - a bot asks Codex to triage untrusted user reports
 - logs or comments might contain instructions like "ignore previous instructions" or "print secrets"
 
-## 15. Failed Agent Run To Reviewable Rule
+## 16. Failed Agent Run To Reviewable Rule
 
 Use this when a coding agent made a repeated workflow mistake.
 
@@ -214,7 +225,7 @@ Recommended maintainer loop:
 4. Copy only evidence-backed rules into the real policy file.
 5. Run `eval` or `scorecard` in CI so the same failure does not silently return.
 
-## 16. Privacy-Preserving Adoption
+## 17. Privacy-Preserving Adoption
 
 Use this when you want public evidence without leaking private traces.
 

package/fixtures/codex-file-tree-ui.md

@@ -0,0 +1,32 @@
+# Codex Desktop File Tree UI Failure
+
+Source cluster:
+- https://github.com/openai/codex/issues/20552
+
+Observed environments:
+- macOS Codex Desktop 26.429.20946, 26.429.30905, and 26.506.31421
+- Windows 11 Codex Desktop 26.429.3425.0, 26.429.61741, and 26.506.31421
+
+Symptoms:
+- View > Toggle File Tree is enabled and shows Shift+Cmd+E, but selecting it produces no visible change.
+- Ctrl+Shift+E on Windows and Cmd+Shift+E on macOS do not reveal the file tree.
+- The upper-right file tree icon or folder icon is gone entirely across projects.
+- The file tree panel does not appear even after restarting the app and opening a workspace.
+- The floating file panel can become stale after files are renamed, moved, deleted, or added outside the conversation.
+- Stale floating panel entries can become unclickable or fail to refresh.
+- Built-in file preview sometimes fails to open .doc, .pdf, or .ppt files until the app restarts.
+- Local persisted keys such as app-shell:right-panel-width:v2:/local/:conversationId do not appear to fix the hidden file tree state.
+- Local bundle inspection suggests toggleFileTreePanel or toggle-file-tree-panel exists in the native menu, but the frontend action handler may not reliably reveal the workspace file tree.
+
+Why it matters:
+- Without a reliable file tree, users cannot inspect project structure, open files predictably, or recover navigation state.
+- File cards generated in assistant responses are not enough because they depend on the model already mentioning the relevant file.
+- A deterministic reveal/reset path is needed for real project work.
+
+Diagnostics to capture:
+- Codex Desktop version, OS version, CPU architecture, and whether the workspace is local, SSH, WSL, or remote.
+- Exact menu item state, keyboard shortcut, and whether invoking the menu through accessibility changes anything.
+- Screenshot or screen recording showing the missing file tree, missing folder icon, or stale floating file panel.
+- Whether a clean profile, new workspace, app restart, or deleting local UI state changes the behavior.
+- Persisted state keys related to app-shell panel widths, sidebar state, and conversation id.
+- File operations used to reproduce stale entries: add, rename, move, delete, or open preview.

package/llms.txt

@@ -20,6 +20,7 @@ Runtime: Node.js 20+
 - Codex mobile and remote-control route health failures such as `Waiting for desktop`, `Directory Unavailable`, stale listeners on `127.0.0.1:14567`, stale `server_name` enrollment, empty backend environments, and incomplete helper bundles
 - Codex MCP runtime failures such as cancelled non-interactive approvals, `request_user_input is not supported in exec mode`, dropped namespace or `serverName` metadata, `unsupported call: mcp__...__...`, and closed `StdioServerTransport` sessions
 - Codex resume and session-state failures such as frozen resume pickers, large rollout JSONL histories, sluggish Desktop thread rendering, dropped recent context after resume, archived chat loading failures, and `state_5.sqlite` / `goals_1.sqlite` migration drift
+- Codex file tree and workspace navigation UI failures such as `View > Toggle File Tree` doing nothing, missing folder icons, stale floating file panels, and built-in preview failures
 - Codex token-burn and usage-drain failures such as background `write_stdin` polling, idle app usage, compaction tax, retry/tool loops, cached-token-heavy turns, fast-mode drift, subagent fan-out, and unclear usage attribution
 - Codex resource leaks and runaway local processes such as high CPU/GPU, `Code Helper`, `Codex Helper Renderer`, orphaned shell snapshots, log floods, thinking animation GPU loops, and non-Git workspace CPU loops
 - Codex quota and usage-limit mismatches where `/status` or the usage page shows remaining quota, accounts share limits unexpectedly, or 5h and weekly quotas move together
@@ -111,6 +112,9 @@ npx trace-to-skill init --comment --sarif
 - Codex MCP unsupported call mcp__node_repl__js
 - Codex MCP tools/list succeeds but runtime call fails
 - Codex MCP Transport closed StdioServerTransport
+- Codex View Toggle File Tree does nothing
+- Codex missing file tree folder icon
+- Codex floating file panel stale workspace navigation
 - Codex resume picker hangs with large session files
 - Codex Desktop sluggish opening large rollout JSONL thread
 - Codex state_5.sqlite no such table thread_goals

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "trace-to-skill",
-  "version": "0.1.48",
+  "version": "0.1.49",
   "description": "Turn failed AI coding-agent runs into reusable AGENTS.md rules, SKILL.md files, and eval evidence.",
   "type": "module",
   "main": "dist/src/index.js",
@@ -82,6 +82,8 @@
     "codex-mcp",
     "mcp-runtime",
     "codex-plugins",
+    "codex-file-tree",
+    "codex-navigation",
     "computer-use",
     "codex-session",
     "codex-resume",

package/schemas/analysis-result.schema.json

@@ -77,6 +77,7 @@
         "codex_remote_control",
         "codex_mcp_runtime",
         "codex_plugin_runtime",
+        "codex_file_tree_ui",
         "codex_session_state",
         "codex_token_burn",
         "codex_resource_leak",