tea-rags 1.31.1 → 1.33.0

package/build/bootstrap/config/schemas.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"schemas.d.ts","sourceRoot":"","sources":["../../../src/bootstrap/config/schemas.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAaxB,eAAO,MAAM,UAAU;;;;;;;;;;;iBAQrB,CAAC;AAEH,eAAO,MAAM,mBAAmB;;;;;;;;;iBAiB9B,CAAC;AAEH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAa1B,CAAC;AAEH,eAAO,MAAM,gBAAgB;;;;;;iBAgB3B,CAAC;AAOH,eAAO,MAAM,YAAY;;;;;;;;;;;;;iBAOvB,CAAC;AAEH,eAAO,MAAM,mBAAmB;;;;;;;;;;iBAU9B,CAAC;AAEH,eAAO,MAAM,eAAe;;;;;;;;;;;iBA+D1B,CAAC;AAEH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;iBAQ3B,CAAC;AAEH,MAAM,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,UAAU,CAAC,CAAC;AACpD,MAAM,MAAM,gBAAgB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,gBAAgB,CAAC,CAAC;AAChE,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,YAAY,CAAC,CAAC;AACxD,MAAM,MAAM,eAAe,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AAG9D,YAAY,EACV,mBAAmB,EACnB,eAAe,EACf,mBAAmB,EACnB,gBAAgB,GACjB,MAAM,sCAAsC,CAAC"}
+{"version":3,"file":"schemas.d.ts","sourceRoot":"","sources":["../../../src/bootstrap/config/schemas.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAcxB,eAAO,MAAM,UAAU;;;;;;;;;;;iBAQrB,CAAC;AAEH,eAAO,MAAM,mBAAmB;;;;;;;;;iBAiB9B,CAAC;AAEH,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;iBAa1B,CAAC;AAEH,eAAO,MAAM,gBAAgB;;;;;;iBAwB3B,CAAC;AAOH,eAAO,MAAM,YAAY;;;;;;;;;;;;;iBAOvB,CAAC;AAEH,eAAO,MAAM,mBAAmB;;;;;;;;;;iBAU9B,CAAC;AAEH,eAAO,MAAM,eAAe;;;;;;;;;;;iBA+D1B,CAAC;AAEH,eAAO,MAAM,gBAAgB;;;;;;;;;;;;iBAQ3B,CAAC;AAEH,MAAM,MAAM,UAAU,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,UAAU,CAAC,CAAC;AACpD,MAAM,MAAM,gBAAgB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,gBAAgB,CAAC,CAAC;AAChE,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,YAAY,CAAC,CAAC;AACxD,MAAM,MAAM,eAAe,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,eAAe,CAAC,CAAC;AAG9D,YAAY,EACV,mBAAmB,EACnB,eAAe,EACf,mBAAmB,EACnB,gBAAgB,GACjB,MAAM,sCAAsC,CAAC"}

package/build/bootstrap/config/schemas.js

@@ -1,6 +1,7 @@
 import { dirname, join } from "node:path";
 import { fileURLToPath } from "node:url";
 import { z } from "zod";
+import { defaultChunkerPoolSize } from "../../core/domains/ingest/pipeline/infra/pool-defaults.js";
 import { booleanFromEnv, booleanFromEnvWithDefault, floatWithDefault, intWithDefault, optionalInt, optionalPositiveInt, } from "./utils.js";
 const __dirname = dirname(fileURLToPath(import.meta.url));
 export const coreSchema = z.object({
@@ -46,7 +47,14 @@ export const embeddingSchema = z.object({
 });
 export const ingestTuneSchema = z.object({
     pipelineConcurrency: intWithDefault(1),
-    chunkerPoolSize: intWithDefault(4),
+    /**
+     * Parse worker count. Workers now run as child processes (ProcessTransport),
+     * so concurrent tree-sitter parsing is safe — the native parse runs in an
+     * isolated process memory space (yl9tv). Default: min(4, cpus-1), floor 1.
+     * Operators can still override via `INGEST_TUNE_CHUNKER_POOL_SIZE` /
+     * `CHUNKER_POOL_SIZE`.
+     */
+    chunkerPoolSize: intWithDefault(defaultChunkerPoolSize()),
     fileConcurrency: intWithDefault(50),
     ioConcurrency: intWithDefault(50),
     /**
@@ -56,7 +64,8 @@ export const ingestTuneSchema = z.object({
      * seam** used by integration tests + recovery scenarios that construct
      * `IngestFacade` directly with their own executor in deps.
      *
-     * Default 4 mirrors `chunkerPoolSize` sizing — operators can override via
+     * Default 4 — independent of the single-flight `chunkerPoolSize` (enrichment
+     * has no shared native-parse hazard). Operators can override via
      * `INGEST_TUNE_ENRICHMENT_POOL_SIZE` or `ENRICHMENT_POOL_SIZE`.
      */
     enrichmentPoolSize: intWithDefault(4),

package/build/bootstrap/config/schemas.js.map

@@ -1 +1 @@
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+{"version":3,"file":"schemas.js","sourceRoot":"","sources":["../../../src/bootstrap/config/schemas.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AAEzC,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,OAAO,EAAE,sBAAsB,EAAE,MAAM,2DAA2D,CAAC;AACnG,OAAO,EACL,cAAc,EACd,yBAAyB,EACzB,gBAAgB,EAChB,cAAc,EACd,WAAW,EACX,mBAAmB,GACpB,MAAM,YAAY,CAAC;AAEpB,MAAM,SAAS,GAAG,OAAO,CAAC,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;AAE1D,MAAM,CAAC,MAAM,UAAU,GAAG,CAAC,CAAC,MAAM,CAAC;IACjC,KAAK,EAAE,cAAc;IACrB,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IAChC,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IACnC,aAAa,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,MAAM,CAAC,CAAC;IACxC,QAAQ,EAAE,cAAc,CAAC,IAAI,CAAC;IAC9B,gBAAgB,EAAE,cAAc,CAAC,MAAM,CAAC;IACxC,iBAAiB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,SAAS,EAAE,uBAAuB,CAAC,CAAC;CAChF,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,mBAAmB,GAAG,CAAC,CAAC,MAAM,CAAC;IAC1C,SAAS,EAAE,cAAc,CAAC,IAAI,CAAC;IAC/B,YAAY,EAAE,WAAW;IACzB,cAAc,EAAE,cAAc,CAAC,IAAI,CAAC;IACpC,oBAAoB,EAAE,mBAAmB;IACzC,aAAa,EAAE,cAAc,CAAC,CAAC,CAAC;IAChC,YAAY,EAAE,cAAc,CAAC,IAAI,CAAC;IAClC;;;;;;OAMG;IACH,wBAAwB,EAAE,cAAc,CAAC,CAAC,CAAC;IAC3C,8FAA8F;IAC9F,uBAAuB,EAAE,cAAc,CAAC,GAAG,CAAC;CAC7C,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,CAAC,MAAM,CAAC;IACtC,QAAQ,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC;IACpF,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IAC5B,UAAU,EAAE,mBAAmB;IAC/B,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC;IAC7C,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IAC9B,eAAe,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IACtC,eAAe,EAAE,cAAc;IAC/B,YAAY,EAAE,cAAc,CAAC,GAAG,CAAC;IACjC,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IACnC,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IACnC,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IACnC,IAAI,EAAE,mBAAmB;CAC1B,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,gBAAgB,GAAG,CAAC,CAAC,MAAM,CAAC;IACvC,mBAAmB,EAAE,cAAc,CAAC,CAAC,CAAC;IACtC;;;;;;OAMG;IACH,eAAe,EAAE,cAAc,CAAC,sBAAsB,EAAE,CAAC;IACzD,eAAe,EAAE,cAAc,CAAC,EAAE,CAAC;IACnC,aAAa,EAAE,cAAc,CAAC,EAAE,CAAC;IACjC;;;;;;;;;;OAUG;IACH,kBAAkB,EAAE,cAAc,CAAC,CAAC,CAAC;CACtC,CAAC,CAAC;AAEH,MAAM,kBAAkB,GAAG,CAAC;KACzB,MAAM,EAAE;KACR,QAAQ,EAAE;KACV,SAAS,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC;AAEzE,MAAM,CAAC,MAAM,YAAY,GAAG,CAAC,CAAC,MAAM,CAAC;IACnC,SAAS,EAAE,cAAc,CAAC,IAAI,CAAC;IAC/B,YAAY,EAAE,cAAc,CAAC,GAAG,CAAC;IACjC,SAAS,EAAE,yBAAyB,CAAC,IAAI,CAAC;IAC1C,YAAY,EAAE,yBAAyB,CAAC,IAAI,CAAC;IAC7C,SAAS,EAAE,kBAAkB;IAC7B,IAAI,EAAE,gBAAgB;CACvB,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,mBAAmB,GAAG,CAAC,CAAC,MAAM,CAAC;IAC1C,OAAO,EAAE,yBAAyB,CAAC,IAAI,CAAC;IACxC,eAAe,EAAE,gBAAgB,CAAC,EAAE,CAAC;IACrC,YAAY,EAAE,cAAc,CAAC,KAAK,CAAC;IACnC,gBAAgB,EAAE,cAAc,CAAC,EAAE,CAAC;IACpC,iBAAiB,EAAE,gBAAgB,CAAC,CAAC,CAAC;IACtC,cAAc,EAAE,cAAc,CAAC,MAAM,CAAC;IACtC,iBAAiB,EAAE,cAAc,CAAC,KAAK,CAAC;IACxC,mBAAmB,EAAE,cAAc;IACnC,iBAAiB,EAAE,cAAc,CAAC,EAAE,CAAC;CACtC,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,eAAe,GAAG,CAAC,CAAC,MAAM,CAAC;IACtC;;;;;;OAMG;IACH,OAAO,EAAE,yBAAyB,CAAC,KAAK,CAAC;IACzC;;;;;OAKG;IACH,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IAC7B;;;;;;;;OAQG;IACH,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC;IACxC;;;;;OAKG;IACH,SAAS,EAAE,cAAc,CAAC,CAAC,CAAC;IAC5B;;;;;;OAMG;IACH,YAAY,EAAE,yBAAyB,CAAC,IAAI,CAAC;IAC7C;;;;;OAKG;IACH,qBAAqB,EAAE,kBAAkB;IACzC;;;;;;;;;;;;;OAaG;IACH,oBAAoB,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,QAAQ,CAAC;CACpE,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,gBAAgB,GAAG,CAAC,CAAC,MAAM,CAAC;IACvC,eAAe,EAAE,cAAc,CAAC,GAAG,CAAC;IACpC,qBAAqB,EAAE,cAAc,CAAC,GAAG,CAAC;IAC1C,cAAc,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,QAAQ,EAAE,QAAQ,CAAC,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC;IACpE,eAAe,EAAE,cAAc,CAAC,GAAG,CAAC;IACpC,iBAAiB,EAAE,cAAc,CAAC,CAAC,CAAC;IACpC,oBAAoB,EAAE,cAAc,CAAC,IAAI,CAAC;IAC1C,kBAAkB,EAAE,cAAc;CACnC,CAAC,CAAC"}

package/build/bootstrap/factory.d.ts

@@ -2,6 +2,7 @@ import { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
 import { GraphDbClientPool } from "../core/adapters/duckdb/index.js";
 import { SchemaBuilder, type App } from "../core/api/index.js";
 import { GraphFacade } from "../core/api/internal/facades/graph-facade.js";
+import type { SymbolChunkResolver } from "../core/contracts/types/codegraph.js";
 import type { IndexRunDaemonGuard } from "../core/contracts/types/enrichment-executor.js";
 import type { CodegraphDeps } from "../core/domains/trajectory/codegraph/index.js";
 import { CollectionRegistry } from "../core/infra/registry/index.js";
@@ -40,4 +41,5 @@ resolveActiveCollection?: (collectionName: string) => Promise<string>): Codegrap
 export declare function createAppContext(config: AppConfig): Promise<AppContext>;
 export declare function loadPrompts(config: AppConfig): PromptsConfig | null;
 export declare function createConfiguredServer(ctx: AppContext, promptsConfig: PromptsConfig | null): McpServer;
+export declare function createSymbolChunkResolver(graphFacade?: GraphFacade): SymbolChunkResolver | undefined;
 //# sourceMappingURL=factory.d.ts.map

package/build/bootstrap/factory.d.ts.map

@@ -1 +1 @@
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package/build/bootstrap/factory.js

@@ -19,7 +19,9 @@ import { WorkerPoolEnrichmentExecutor } from "../core/domains/ingest/pipeline/en
 import { initDebugLogger, pipelineLog } from "../core/domains/ingest/pipeline/infra/debug-logger.js";
 import { setDebug } from "../core/domains/ingest/pipeline/infra/runtime.js";
 import { buildPipelineConfig } from "../core/domains/ingest/pipeline/types.js";
-import { DefaultSymbolIdComposer } from "../core/domains/language/index.js";
+import { collectSymbols, DefaultSymbolIdComposer } from "../core/domains/language/index.js";
+import { CollectionFootprintFactory } from "../core/domains/maintenance/footprint/index.js";
+import { WorktreeOps } from "../core/domains/maintenance/worktree/index.js";
 import { InMemoryGlobalSymbolTable } from "../core/domains/trajectory/codegraph/symbols/symbol-table.js";
 import { EmbeddingModelGuard } from "../core/infra/embedding-model-guard.js";
 import { CollectionRegistry } from "../core/infra/registry/index.js";
@@ -354,6 +356,7 @@ resolveActiveCollection) {
     const deps = {
         pool,
         composer: symbolIdComposer,
+        collectSymbols,
         // Threaded to composition roots so NATIVE language providers (ruby, …) build
         // their resolver with the configured mode.
         ambiguousResolveMode: ambiguousMode,
@@ -495,6 +498,26 @@ export async function createAppContext(config) {
         embeddings: infra.embeddings,
         snapshotDir: config.paths.snapshots,
     });
+    // Worktree index cloning (domains/maintenance). Reuses the live codegraph
+    // pool when enabled; falls back to a throwaway pool (codegraph artifact is a
+    // no-op when codegraphEnabled is false) so the footprint factory always has
+    // a pool to delegate to.
+    const footprintFactory = new CollectionFootprintFactory({
+        qdrant: infra.qdrant,
+        pool: codegraphContext?.pool ??
+            new GraphDbClientPool({
+                rootDir: config.paths.appData,
+                symbolTableFactory: () => new InMemoryGlobalSymbolTable(),
+            }),
+        statsCache,
+        snapshotBaseDir: config.paths.snapshots,
+    });
+    const worktreeOps = new WorktreeOps({
+        registry: collectionRegistry,
+        qdrant: infra.qdrant,
+        footprintFactory,
+        dataDir: config.paths.appData,
+    });
     const explore = new ExploreFacade({
         qdrant: infra.qdrant,
         embeddings: infra.embeddings,
@@ -506,6 +529,7 @@ export async function createAppContext(config) {
         payloadSignals: composition.allPayloadSignalDescriptors,
         essentialKeys: essentialTrajectoryFields,
         modelGuard: infra.modelGuard,
+        chunkResolver: createSymbolChunkResolver(codegraphContext?.graphFacade),
     });
     const app = createApp({
         qdrant: infra.qdrant,
@@ -515,6 +539,7 @@ export async function createAppContext(config) {
         reranker: composition.reranker,
         schemaDriftMonitor,
         projectRegistryOps,
+        worktreeOps,
         quantizationScalar: zodConfig.qdrantTune.quantizationScalar,
         modelGuard: infra.modelGuard,
         graphFacade: codegraphContext?.graphFacade,
@@ -578,4 +603,18 @@ export function createConfiguredServer(ctx, promptsConfig) {
     registerAllPrompts(server, promptsConfig);
     return server;
 }
+// ---------------------------------------------------------------------------
+// createSymbolChunkResolver — adapts GraphFacade to the SymbolChunkResolver
+// interface the explore domain consumes. bootstrap/ is the only layer allowed
+// to bridge api/internal (GraphFacade) to the contracts/ interface. Returns
+// undefined when codegraph is disabled, so the whole fallback degrades to
+// today's behaviour end-to-end.
+// ---------------------------------------------------------------------------
+export function createSymbolChunkResolver(graphFacade) {
+    if (!graphFacade)
+        return undefined;
+    return {
+        resolveSymbolChunk: async (collectionName, symbolId) => graphFacade.resolveSymbolChunk({ collection: collectionName }, symbolId),
+    };
+}
 //# sourceMappingURL=factory.js.map

package/build/bootstrap/factory.js.map

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package/build/cli/commands/doctor.d.ts

@@ -1,9 +1,10 @@
 import type { CommandModule } from "yargs";
-import type { EmbeddingProvider } from "../../core/api/public/index.js";
-import { QdrantManager } from "../../core/api/public/index.js";
+import { QdrantManager, type EmbeddingProvider } from "../../core/api/public/index.js";
 interface DoctorArgs {
     json?: boolean;
     recoverRegistry?: boolean;
+    quarantine?: boolean;
+    path?: string;
 }
 /**
  * Narrow surfaces of QdrantManager + EmbeddingProvider that runDoctor needs.
@@ -30,6 +31,16 @@ interface DoctorDeps {
  * embeddings via the same bootstrap path the server uses.
  */
 export declare function runDoctor(args: DoctorArgs, deps?: DoctorDeps): Promise<void>;
+/**
+ * `tea-rags doctor --quarantine [path]` — list the poison-pill files that broke
+ * indexing for a project. Human table by default; `--json` emits the full
+ * structured list (path, errorCode, phase, attempts, timestamps) so an agent can
+ * triage or help file a GitHub issue.
+ */
+export declare function runQuarantineDoctor(args: {
+    path: string;
+    json?: boolean;
+}): Promise<void>;
 /**
  * `tea-rags doctor` yargs subcommand. `--recover-registry` delegates to
  * `ProjectRegistryOps.recoverFromQdrant` via `runDoctor`.

package/build/cli/commands/doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAQ,aAAa,EAAE,MAAM,OAAO,CAAC;AAEjD,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,gCAAgC,CAAC;AACxE,OAAO,EAAE,aAAa,EAAE,MAAM,gCAAgC,CAAC;AAI/D,UAAU,UAAU;IAClB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,eAAe,CAAC,EAAE,OAAO,CAAC;CAC3B;AAED;;;GAGG;AACH,UAAU,UAAU;IAClB,MAAM,EAAE,IAAI,CACV,aAAa,EACb,KAAK,GAAG,aAAa,GAAG,iBAAiB,GAAG,mBAAmB,GAAG,aAAa,GAAG,gBAAgB,CACnG,GAAG;QACF;;;;WAIG;QACH,OAAO,CAAC,EAAE,IAAI,CAAC,aAAa,CAAC,SAAS,CAAC,EAAE,aAAa,CAAC,CAAC;KACzD,CAAC;IACF,UAAU,EAAE,IAAI,CAAC,iBAAiB,EAAE,aAAa,GAAG,iBAAiB,GAAG,YAAY,CAAC,CAAC;CACvF;AAmBD;;;;;;;;GAQG;AACH,wBAAsB,SAAS,CAAC,IAAI,EAAE,UAAU,EAAE,IAAI,CAAC,EAAE,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,CAyElF;AAyBD;;;GAGG;AACH,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,OAAO,EAAE,UAAU,CAqB5D,CAAC"}
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/doctor.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAQ,aAAa,EAAE,MAAM,OAAO,CAAC;AAEjD,OAAO,EAGL,aAAa,EAIb,KAAK,iBAAiB,EACvB,MAAM,gCAAgC,CAAC;AAExC,UAAU,UAAU;IAClB,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,eAAe,CAAC,EAAE,OAAO,CAAC;IAC1B,UAAU,CAAC,EAAE,OAAO,CAAC;IACrB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED;;;GAGG;AACH,UAAU,UAAU;IAClB,MAAM,EAAE,IAAI,CACV,aAAa,EACb,KAAK,GAAG,aAAa,GAAG,iBAAiB,GAAG,mBAAmB,GAAG,aAAa,GAAG,gBAAgB,CACnG,GAAG;QACF;;;;WAIG;QACH,OAAO,CAAC,EAAE,IAAI,CAAC,aAAa,CAAC,SAAS,CAAC,EAAE,aAAa,CAAC,CAAC;KACzD,CAAC;IACF,UAAU,EAAE,IAAI,CAAC,iBAAiB,EAAE,aAAa,GAAG,iBAAiB,GAAG,YAAY,CAAC,CAAC;CACvF;AAmBD;;;;;;;;GAQG;AACH,wBAAsB,SAAS,CAAC,IAAI,EAAE,UAAU,EAAE,IAAI,CAAC,EAAE,UAAU,GAAG,OAAO,CAAC,IAAI,CAAC,CAyElF;AAED;;;;;GAKG;AACH,wBAAsB,mBAAmB,CAAC,IAAI,EAAE;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,IAAI,CAAC,EAAE,OAAO,CAAA;CAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CA6B/F;AAyBD;;;GAGG;AACH,eAAO,MAAM,aAAa,EAAE,aAAa,CAAC,OAAO,EAAE,UAAU,CAmC5D,CAAC"}

package/build/cli/commands/doctor.js

@@ -1,8 +1,6 @@
 import { homedir } from "node:os";
 import { join } from "node:path";
-import { QdrantManager } from "../../core/api/public/index.js";
-import { ProjectRegistryOps } from "../../core/api/public/index.js";
-import { CollectionRegistry } from "../../core/api/public/index.js";
+import { CollectionRegistry, ProjectRegistryOps, QdrantManager, QuarantineStore, resolveCollectionName, validatePath, } from "../../core/api/public/index.js";
 function resolveDataDir() {
     return process.env.TEA_RAGS_DATA_DIR ?? join(homedir(), ".tea-rags");
 }
@@ -87,6 +85,37 @@ export async function runDoctor(args, deps) {
         process.stdout.write(`${statusPrefix(true, true)} Registry: ${orphanCount} orphan collection(s) — run 'tea-rags doctor --recover-registry' or 'tea-rags projects orphans' to inspect\n`);
     }
 }
+/**
+ * `tea-rags doctor --quarantine [path]` — list the poison-pill files that broke
+ * indexing for a project. Human table by default; `--json` emits the full
+ * structured list (path, errorCode, phase, attempts, timestamps) so an agent can
+ * triage or help file a GitHub issue.
+ */
+export async function runQuarantineDoctor(args) {
+    const project = await validatePath(args.path);
+    const collectionName = resolveCollectionName(project);
+    const snapshotDir = join(resolveDataDir(), "snapshots");
+    const entries = await new QuarantineStore(snapshotDir, collectionName).load();
+    const files = [...entries.entries()].map(([path, entry]) => ({ path, ...entry }));
+    if (args.json) {
+        process.stdout.write(`${JSON.stringify({ project, collectionName, count: files.length, files }, null, 2)}\n`);
+        return;
+    }
+    if (files.length === 0) {
+        process.stdout.write("No quarantined files.\n");
+        return;
+    }
+    process.stdout.write(`Quarantined files (${files.length}) for ${collectionName}:\n`);
+    for (const f of files) {
+        process.stdout.write(`  ${f.path}\n`);
+        process.stdout.write(`    ${f.errorCode} · phase=${f.phase} · attempts=${f.attempts} · last=${f.lastFailedAt}\n`);
+        // The error message carries the human-readable reason (e.g. "AST not
+        // processed") — the only field that distinguishes two same-code/same-phase
+        // quarantines (a degraded-AST parse failure vs a generic parse throw).
+        process.stdout.write(`    ${f.errorMessage}\n`);
+    }
+    process.stdout.write(`\nThese files are retried automatically on the next index. Re-run 'tea-rags doctor --quarantine --json' to capture the full list (e.g. to file a GitHub issue).\n`);
+}
 /**
  * Build the same QdrantManager + EmbeddingProvider the MCP server would use.
  * Mirrors the construction path in src/bootstrap/factory.ts:resolveInfrastructure,
@@ -113,9 +142,14 @@ async function defaultDeps() {
  * `ProjectRegistryOps.recoverFromQdrant` via `runDoctor`.
  */
 export const doctorCommand = {
-    command: "doctor",
+    command: "doctor [path]",
     describe: "Print infrastructure + registry health summary",
     builder: (yargs) => yargs
+        .positional("path", {
+        type: "string",
+        describe: "Project path (for --quarantine; defaults to current directory)",
+        default: ".",
+    })
         .option("json", {
         type: "boolean",
         default: false,
@@ -125,8 +159,17 @@ export const doctorCommand = {
         type: "boolean",
         default: false,
         describe: "Repopulate the project registry from live Qdrant state",
+    })
+        .option("quarantine", {
+        type: "boolean",
+        default: false,
+        describe: "List poison-pill files that broke indexing (skipped, retried automatically)",
     }),
     handler: async (argv) => {
+        if (argv.quarantine) {
+            await runQuarantineDoctor({ path: argv.path ?? ".", json: argv.json });
+            return;
+        }
         await runDoctor({
             json: argv.json,
             recoverRegistry: Boolean(argv["recover-registry"]),

package/build/cli/commands/doctor.js.map

@@ -1 +1 @@
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package/build/cli/commands/index-codebase.d.ts

@@ -0,0 +1,14 @@
+import type { CommandModule } from "yargs";
+export interface IndexCodebaseArgs {
+    path?: string;
+    project?: string;
+    /** Register the resolved path under this alias before indexing (first index of a new project). */
+    name?: string;
+    "wait-enrichments"?: boolean;
+    force?: boolean;
+    json?: boolean;
+    /** Hidden: marks the forked child as the detached indexing worker. */
+    __worker?: boolean;
+}
+export declare const indexCodebaseCommand: CommandModule<object, IndexCodebaseArgs>;
+//# sourceMappingURL=index-codebase.d.ts.map

package/build/cli/commands/index-codebase.d.ts.map

@@ -0,0 +1 @@
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package/build/cli/commands/index-codebase.js

@@ -0,0 +1,139 @@
+import { fork } from "node:child_process";
+import { homedir } from "node:os";
+import { join, resolve } from "node:path";
+import { CollectionRegistry, InputValidationError, ProjectRegistryOps, } from "../../core/api/public/index.js";
+import { pickRegistryEntry, resolveRegistryEnv } from "../index-progress/registry-env.js";
+import { createRenderer } from "../index-progress/renderer.js";
+import { superviseIndexing } from "../index-progress/supervisor.js";
+import { createColorizer } from "../infra/color.js";
+import { applyProjectDefaults } from "../registry-resolver.js";
+/**
+ * Fork the same CLI binary as a detached worker that runs the actual indexing.
+ * `detached` + own process group means the worker survives the foreground's exit
+ * (default mode detaches once embeddings finish); `ipc` carries progress back.
+ * stdio is otherwise ignored — the foreground owns the terminal and renders.
+ */
+function forkWorker(path, options, envOverrides) {
+    return fork(process.argv[1], ["index-codebase", "--__worker"], {
+        detached: true,
+        stdio: ["ignore", "ignore", "ignore", "ipc"],
+        // Registry-resolved config seeds the worker env; ambient process.env wins so
+        // explicit overrides still take precedence (gap-fill, not override).
+        env: { ...envOverrides, ...process.env, TEA_RAGS_INDEX_WORKER: JSON.stringify({ path, options }) },
+    });
+}
+function resolveDataDir() {
+    return process.env.TEA_RAGS_DATA_DIR ?? join(homedir(), ".tea-rags");
+}
+/**
+ * Resolve the registered project alias for the given resolved path.
+ * Uses `findByPath` for exact path match, then falls back to `get(collectionName)`
+ * when collectionName is known. Returns null when no alias is registered.
+ */
+function resolveProjectName(registry, resolvedPath) {
+    const entry = registry.findByPath(resolvedPath);
+    return entry?.name ?? null;
+}
+/**
+ * Render a typed registration failure and let the handler exit(1) before any
+ * worker is forked. JSON mode emits a parseable { error } object on stdout;
+ * text mode writes a colorized one-liner to stderr. Non-typed errors (program
+ * bugs) propagate unchanged.
+ */
+function renderRegisterError(err, opts) {
+    if (!(err instanceof InputValidationError))
+        throw err;
+    if (opts.json) {
+        process.stdout.write(`${JSON.stringify({ error: { code: err.code, message: err.message } })}\n`);
+    }
+    else {
+        process.stderr.write(`${opts.colors.alert(`index-codebase: ${err.message}`)}\n`);
+    }
+}
+export const indexCodebaseCommand = {
+    command: "index-codebase [path]",
+    describe: "Index a codebase with live embedding + per-provider enrichment progress.",
+    builder: (yargs) => yargs
+        .positional("path", {
+        type: "string",
+        describe: "Project path to index. Optional if --project is given (defaults to cwd).",
+    })
+        .option("project", {
+        type: "string",
+        describe: "Project alias from the registry. Resolves --path from the registered entry.",
+    })
+        .option("name", {
+        type: "string",
+        describe: "Register the path under <alias> in the project registry, then index. Use for the first index of a new project.",
+    })
+        .conflicts("name", "project")
+        .option("wait-enrichments", {
+        type: "boolean",
+        default: false,
+        describe: "Stay until every enrichment provider finishes (full per-provider bars). Default: detach after embeddings with an ETA.",
+    })
+        .option("force", {
+        type: "boolean",
+        default: false,
+        describe: "Force a full re-index from scratch instead of incremental.",
+    })
+        .option("json", {
+        type: "boolean",
+        default: false,
+        describe: "Emit a single JSON object to stdout at finish instead of human-readable output. Intended for agent/script consumers.",
+    })
+        .option("__worker", { type: "boolean", default: false, hidden: true }),
+    handler: async (argv) => {
+        // Forked child path: run the worker entry, not another supervisor.
+        if (argv.__worker) {
+            const { main } = await import("../index-progress/worker.js");
+            await main();
+            return;
+        }
+        const resolved = applyProjectDefaults(argv);
+        const path = resolve(resolved.path ?? process.cwd());
+        const options = { forceReindex: Boolean(argv.force) };
+        const waitEnrichments = Boolean(argv["wait-enrichments"]);
+        const jsonMode = Boolean(argv.json);
+        // Seed the worker's embedding / codegraph config from the registry (the
+        // named project, this path's entry, or — for a new project — the most
+        // recently indexed one) so the operator need not re-export EMBEDDING_* envs.
+        const dataDir = resolveDataDir();
+        const registry = new CollectionRegistry(dataDir);
+        const registryEnv = resolveRegistryEnv(pickRegistryEntry(registry, { project: argv.project, path }));
+        // JSON mode forces NO_COLOR semantics so the output is clean for parsing.
+        const colors = createColorizer(jsonMode ? { env: { NO_COLOR: "1" }, isTTY: false } : undefined);
+        // --name: register this path under the alias BEFORE indexing so a new
+        // project gets its alias in one command. Env is already resolved above, so
+        // the fresh stub entry does not shadow the most-recently-indexed embedding
+        // fallback. No qdrant in deps — the collection does not exist yet. A typed
+        // failure renders and exits before any worker is forked.
+        if (argv.name) {
+            try {
+                await new ProjectRegistryOps({ registry }).register({ path, name: argv.name });
+            }
+            catch (err) {
+                renderRegisterError(err, { json: jsonMode, colors });
+                process.exit(1);
+            }
+        }
+        // Resolve the registered project alias for the status block.
+        const projectName = argv.name ?? argv.project ?? resolveProjectName(registry, path) ?? undefined;
+        const renderer = createRenderer({ isTTY: Boolean(process.stderr.isTTY), colors, json: jsonMode });
+        const child = forkWorker(path, options, registryEnv);
+        const code = await superviseIndexing(child, {
+            renderer,
+            waitEnrichments,
+            colors,
+            out: (line) => process.stdout.write(`${line}\n`),
+            now: () => Date.now(),
+            projectName,
+            path,
+        });
+        // Detached + own process group: exiting the foreground here leaves the worker
+        // running to finish enrichment in default mode. In --wait mode the worker has
+        // already emitted `done`, so exiting is clean.
+        process.exit(code);
+    },
+};
+//# sourceMappingURL=index-codebase.js.map

package/build/cli/commands/index-codebase.js.map

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package/build/cli/commands/project.d.ts

@@ -0,0 +1,10 @@
+import type { CommandModule } from "yargs";
+export interface ProjectExistArgs {
+    path?: string;
+    name?: string;
+    printName?: boolean;
+    json?: boolean;
+}
+export declare function runProjectExist(args: ProjectExistArgs): void;
+export declare const projectCommand: CommandModule;
+//# sourceMappingURL=project.d.ts.map

package/build/cli/commands/project.d.ts.map

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