synapse-react-client 4.0.46 → 4.0.47

package/dist/mocks/cohortBuilder/cohortBuilderMockQueryEngine.js

@@ -0,0 +1,379 @@
+import "../../utils/SynapseConstants.js";
+import { DATA_REFERENCE_COLUMN_NAME as e, PARTICIPANT_ID_COLUMN_NAME as t, REFERENCE_TYPE_COLUMN_NAME as n, STUDY_COLUMN_NAME as r } from "./cohortBuilderMockProfiles.js";
+import { createSeededRandom as i } from "./cohortBuilderSyntheticData.js";
+import { ColumnMultiValueFunction as a, ColumnSingleValueFilterOperator as o } from "@sage-bionetworks/synapse-types";
+//#region src/mocks/cohortBuilder/cohortBuilderMockQueryEngine.ts
+var s = 403, c = 403, l = "id", u = "name", d = "2026-10-01T00:00:00.000Z", f = 1e3, p = class extends Error {
+	status;
+	body;
+	constructor(e, t) {
+		super(t.reason), this.status = e, this.body = t;
+	}
+};
+function m(e) {
+	return new p(400, {
+		concreteType: "org.sagebionetworks.repo.model.ErrorResponse",
+		reason: e
+	});
+}
+function h(e) {
+	let { profile: i, dataAttributeNames: a } = e, o = 1, s = (e, t, n) => ({
+		id: String(o++),
+		name: e,
+		columnType: t,
+		facetType: n ? "enumeration" : void 0
+	});
+	return {
+		participants: [
+			s(t, "STRING", !1),
+			s(r, "STRING", !0),
+			...i.participantAttributes.map((e) => s(e.name, "STRING", !0)),
+			...a.map((e) => s(e, "STRING_LIST", !0))
+		],
+		dataReferences: [
+			s(l, "ENTITYID", !1),
+			s(u, "STRING", !1),
+			s(n, "STRING", !0),
+			s(r, "STRING", !0),
+			...a.map((e) => s(e, "STRING", !0))
+		]
+	};
+}
+function g(e) {
+	let t = e.replaceAll(/[.*+?^${}()|[\]\\]/g, String.raw`\$&`).replaceAll("%", ".*").replaceAll("_", ".");
+	return RegExp(`^${t}$`, "i");
+}
+function _(e, t) {
+	let n = Number(e), r = Number(t);
+	return Number.isFinite(n) && Number.isFinite(r) ? n - r : String(e).localeCompare(String(t));
+}
+function v(e, t, n) {
+	switch (t) {
+		case o.EQUAL:
+		case o.IN: return n.includes(String(e));
+		case o.LIKE: return n.some((t) => g(t).test(String(e)));
+		case o.NOT_EQUAL: return n.every((t) => String(e) !== t);
+		case o.GREATER_THAN: return _(e, n[0]) > 0;
+		case o.GREATER_THAN_OR_EQUAL: return _(e, n[0]) >= 0;
+		case o.LESS_THAN: return _(e, n[0]) < 0;
+		case o.LESS_THAN_OR_EQUAL: return _(e, n[0]) <= 0;
+		case o.BETWEEN: return _(e, n[0]) >= 0 && _(e, n[1]) <= 0;
+		default: throw m(`Unsupported operator: ${t}`);
+	}
+}
+function y(e, t) {
+	if (!(t.columnName in e)) throw m(`Column does not exist: ${t.columnName}`);
+	let n = e[t.columnName], r = Array.isArray(n) ? n.length === 0 : n === "";
+	return t.operator === o.IS_NULL ? r : t.operator === o.IS_NOT_NULL ? !r : (Array.isArray(n) ? n : [n]).some((e) => v(e, t.operator, t.values));
+}
+function b(e, t, n) {
+	if (!n.listColumnNames.has(t.columnName)) throw m(`${t.function} can only be used on a multi-value (list) column: ${t.columnName}`);
+	let r = e[t.columnName];
+	return t.function === a.HAS_LIKE ? t.values.some((e) => r.some((t) => g(e).test(t))) : r.some((e) => t.values.includes(e));
+}
+function x(e, t, n) {
+	if (!(t.columnName in e)) throw m(`Column does not exist: ${t.columnName}`);
+	return n.cohortValues.get(t.cohortName)?.has(String(e[t.columnName])) ?? !1;
+}
+function S(e, t, n) {
+	switch (t.concreteType) {
+		case "org.sagebionetworks.repo.model.table.FilterGroup": {
+			let r = t.children ?? [], i = t.operator === "OR" ? r.some((t) => S(e, t, n)) : r.every((t) => S(e, t, n));
+			return t.not ? !i : i;
+		}
+		case "org.sagebionetworks.repo.model.table.ColumnSingleValueQueryFilter": return y(e, t);
+		case "org.sagebionetworks.repo.model.table.ColumnMultiValueFunctionQueryFilter": return b(e, t, n);
+		case "org.sagebionetworks.repo.model.table.ColumnCohortFilter": return x(e, t, n);
+		default: throw m(`The Cohort Builder mock does not support ${t.concreteType}`);
+	}
+}
+function C(e, t) {
+	let n = e[t.columnName], r = Array.isArray(n) ? n : [n];
+	return t.concreteType === "org.sagebionetworks.repo.model.table.FacetColumnValuesRequest" ? r.some((e) => t.facetValues.includes(String(e))) : r.some((e) => (t.min === void 0 || _(e, t.min) >= 0) && (t.max === void 0 || _(e, t.max) <= 0));
+}
+function w(e, n) {
+	let i = /* @__PURE__ */ new Map();
+	for (let n of e) {
+		let e = n[t], r = i.get(e);
+		r ? r.push(n) : i.set(e, [n]);
+	}
+	return Array.from(i.values(), (e) => {
+		let i = e[0], a = {
+			[t]: i[t],
+			[r]: i[r]
+		};
+		for (let e of n.profile.participantAttributes) a[e.name] = i[e.name];
+		for (let t of n.dataAttributeNames) a[t] = Array.from(new Set(e.map((e) => e[t]))).sort((e, t) => e.localeCompare(t));
+		return a;
+	});
+}
+function T(t, i) {
+	let a = new Set(t.map((t) => t[e]));
+	return Array.from(a, (e) => {
+		let t = i.references.get(e);
+		return {
+			[l]: t.id,
+			[u]: t.name,
+			[n]: t.referenceType,
+			[r]: t.study,
+			...t.attributes
+		};
+	});
+}
+function E(e) {
+	let t = 2166136261;
+	for (let n of e) t ^= n.codePointAt(0), t = Math.imul(t, 16777619);
+	return t >>> 0;
+}
+function D(e, t, n) {
+	let r = i(E(n))() - .5, a = -(1 / t) * Math.sign(r) * Math.log(1 - 2 * Math.abs(r));
+	return Math.max(0, Math.round(e + a));
+}
+function O(e, t) {
+	let n = /* @__PURE__ */ new Map();
+	for (let r of e) {
+		let e = r[t], i = typeof e == "object" ? e : [String(e)];
+		for (let e of i) n.set(e, (n.get(e) ?? 0) + 1);
+	}
+	return n;
+}
+function k(e, t, n, r, i) {
+	let a = Array.from(t).sort(([e, t], [n, r]) => r - t || e.localeCompare(n)), o = r?.facetPostProcessingConfig, s = o?.parameters;
+	if (o?.algorithm === "ROUNDING" && s?.concreteType === "org.sagebionetworks.repo.model.FacetRoundingParameters") {
+		let t = s.roundTo ?? 1;
+		return {
+			concreteType: "org.sagebionetworks.repo.model.table.FacetColumnResultBinnedValues",
+			columnName: e,
+			facetType: "enumeration",
+			binSize: t,
+			binnedValues: a.map(([e, r]) => ({
+				value: e,
+				binMin: Math.floor(r / t) * t,
+				isSelected: n.includes(e)
+			}))
+		};
+	}
+	let c = o?.algorithm === "NOISE" && s?.concreteType === "org.sagebionetworks.repo.model.FacetNoiseParameters" ? s.epsilon ?? 1 : void 0;
+	return {
+		concreteType: "org.sagebionetworks.repo.model.table.FacetColumnResultValues",
+		columnName: e,
+		facetType: "enumeration",
+		facetValues: a.map(([t, r]) => ({
+			value: t,
+			count: c === void 0 ? r : D(r, c, `${i}\u0000${e}\u0000${t}`),
+			isSelected: n.includes(t)
+		}))
+	};
+}
+function A(e) {
+	return `'${e.replaceAll("'", "''")}'`;
+}
+var j = {
+	EQUAL: "=",
+	NOT_EQUAL: "<>",
+	GREATER_THAN: ">",
+	GREATER_THAN_OR_EQUAL: ">=",
+	LESS_THAN: "<",
+	LESS_THAN_OR_EQUAL: "<=",
+	LIKE: "LIKE"
+};
+function M(e) {
+	switch (e.concreteType) {
+		case "org.sagebionetworks.repo.model.table.FilterGroup": {
+			let t = (e.children ?? []).map(M).join(` ${e.operator ?? "AND"} `);
+			return `${e.not ? "NOT " : ""}(${t})`;
+		}
+		case "org.sagebionetworks.repo.model.table.ColumnSingleValueQueryFilter": {
+			let t = `"${e.columnName}"`;
+			switch (e.operator) {
+				case o.IN: return `${t} IN (${e.values.map(A).join(", ")})`;
+				case o.IS_NULL: return `${t} IS NULL`;
+				case o.IS_NOT_NULL: return `${t} IS NOT NULL`;
+				case o.BETWEEN: return `${t} BETWEEN ${A(e.values[0])} AND ${A(e.values[1])}`;
+				default: {
+					let n = j[e.operator], r = e.values.map((e) => `${t} ${n} ${A(e)}`);
+					return r.length === 1 ? r[0] : `(${r.join(" OR ")})`;
+				}
+			}
+		}
+		case "org.sagebionetworks.repo.model.table.ColumnMultiValueFunctionQueryFilter": return `"${e.columnName}" ${e.function} (${e.values.map(A).join(", ")})`;
+		case "org.sagebionetworks.repo.model.table.ColumnCohortFilter": return `"${e.columnName}" IN COHORT(${e.cohortName})`;
+		default: return "";
+	}
+}
+function N(e, t) {
+	return !t || t.length === 0 ? e : [...e].sort((e, n) => {
+		for (let { column: r, direction: i } of t) {
+			let t = (e) => Array.isArray(e) ? e.join(",") : e, a = _(t(e[r]), t(n[r]));
+			if (a !== 0) return i === "DESC" ? -a : a;
+		}
+		return 0;
+	});
+}
+function P(e, t) {
+	if (t === e.participantsVirtualTableId) return "PARTICIPANTS";
+	if (t === e.dataVirtualTableId) return "DATA";
+	throw new p(404, {
+		concreteType: "org.sagebionetworks.repo.model.ErrorResponse",
+		reason: `The Cohort Builder mock has no table ${t}`
+	});
+}
+function F(e, t, n) {
+	return n === "FULL" ? t.aggregateDataPreview : {
+		suppressionThreshold: e.suppressionThreshold,
+		countSuppressionStrategy: e.countSuppressionStrategy,
+		facetPostProcessingConfig: e.facetPostProcessingConfig
+	};
+}
+function I(e, t, n) {
+	if (n && e === "PARTICIPANTS" && t & 1) throw new p(403, {
+		concreteType: "org.sagebionetworks.repo.model.table.RowSuppressionErrorResponse",
+		reason: "Row results are withheld because the query projects a quasi-identifier column. Re-run the query without requesting row results.",
+		errorCode: "ROW_SUPPRESSED",
+		rowSuppressionReasonCode: "QID_PROJECTED"
+	});
+}
+function L(e, t) {
+	if (!t) return;
+	let n = t.suppressionThreshold;
+	if (e > 0 && e < n) throw new p(403, {
+		concreteType: "org.sagebionetworks.repo.model.table.BelowThresholdErrorResponse",
+		reason: `The number of records matched by this query is below the minimum threshold of ${n} required to return a result.`,
+		errorCode: "BELOW_THRESHOLD",
+		suppressionThreshold: n
+	});
+}
+function R(e, t, n, r) {
+	let i = n.additionalFilters ?? [], a = n.selectedFacets ?? [], o = i.filter((e) => e.isDefiningCondition), s = i.filter((e) => !e.isDefiningCondition), c = {
+		...r,
+		listColumnNames: /* @__PURE__ */ new Set()
+	}, l = e.materialRows.filter((e) => o.every((t) => S(e, t, c))), u = t === "PARTICIPANTS" ? w(l, e) : T(l, e), d = (e) => u.filter((t) => s.every((e) => S(t, e, r)) && a.every((n) => n.columnName === e || C(t, n)));
+	return {
+		rows: d(),
+		ignoringFacetSelection: d
+	};
+}
+function z(e, t, n, r, i) {
+	let a = i.offset ?? 0;
+	return {
+		concreteType: "org.sagebionetworks.repo.model.table.QueryResult",
+		queryResults: {
+			concreteType: "org.sagebionetworks.repo.model.table.RowSet",
+			tableId: e,
+			headers: n,
+			rows: N(r, i.sort).slice(a, a + (i.limit ?? r.length)).map((e) => ({ values: t.map(({ name: t }) => {
+				let n = e[t];
+				return Array.isArray(n) ? JSON.stringify(n) : String(n);
+			}) }))
+		}
+	};
+}
+function B(e, t, n, r) {
+	let i = t.selectedFacets ?? [], a = JSON.stringify([t.additionalFilters ?? [], i]);
+	return e.filter((e) => e.facetType === "enumeration").map(({ name: e }) => {
+		let t = i.find((t) => t.columnName === e);
+		return k(e, O(n.ignoringFacetSelection(e), e), t?.concreteType === "org.sagebionetworks.repo.model.table.FacetColumnValuesRequest" ? t.facetValues : [], r, a);
+	});
+}
+function V(e, t) {
+	let n = t.map(M).filter(Boolean);
+	return `SELECT * FROM ${e}${n.length > 0 ? ` WHERE ${n.join(" AND ")}` : ""}`;
+}
+var H = 1e4, U = 5, W = /^[A-Za-z_]\w*$/, G = /^\s*SELECT\s+(\w+)\s+FROM\s+(syn\d+)\s*$/i;
+function K(e, t = !1) {
+	return e.flatMap((e) => {
+		let n = t || e.isDefiningCondition === !0;
+		return e.concreteType === "org.sagebionetworks.repo.model.table.FilterGroup" ? K(e.children ?? [], n) : e.concreteType === "org.sagebionetworks.repo.model.table.ColumnCohortFilter" ? [{
+			filter: e,
+			isDefining: n
+		}] : [];
+	});
+}
+function q(e, t) {
+	let { name: n, query: r } = t;
+	if ((r.cohorts?.length ?? 0) > 0 || K(r.additionalFilters ?? []).length > 0) throw m(`Cohort '${n}' cannot reference other cohorts.`);
+	if ((r.sort?.length ?? 0) > 0 || r.limit !== void 0 || r.offset !== void 0) throw m(`Cohort '${n}' cannot use sort, limit or offset.`);
+	let i = G.exec(r.sql);
+	if (!i) throw m(`Cohort '${n}' must select exactly one plain column from a single table.`);
+	let [, a, o] = i, s = P(e.profile, o), c = h(e)[s === "PARTICIPANTS" ? "participants" : "dataReferences"], l = c.find((e) => e.name === a);
+	if (!l?.columnType || l.columnType.endsWith("_LIST")) throw m(`Cohort '${n}' must select a non-list column of ${o}: ${a}`);
+	return {
+		name: n,
+		query: r,
+		perspective: s,
+		columnName: a,
+		columnType: l.columnType,
+		columnModels: c
+	};
+}
+function J(e, t, n, r, i) {
+	let { rows: a } = R(e, t.perspective, t.query, {
+		listColumnNames: new Set(t.columnModels.filter((e) => e.columnType?.endsWith("_LIST")).map((e) => e.name)),
+		cohortValues: /* @__PURE__ */ new Map()
+	}), o = new Set(a.map((e) => String(e[t.columnName])));
+	if (o.size > i) throw new p(400, {
+		concreteType: "org.sagebionetworks.repo.model.ErrorResponse",
+		reason: `Cohort '${t.name}' exceeds the maximum of ${i} values.`,
+		errorCode: "COHORT_TOO_LARGE"
+	});
+	return r === "AGGREGATE_ONLY" && L(o.size, F(e.profile, n, r)), o;
+}
+function Y(e, t, n, r, i) {
+	let { filter: a, isDefining: o } = t, s = e.materialRows.length > 0 && a.columnName in e.materialRows[0] ? "STRING" : void 0, c = o ? s : r.find((e) => e.name === a.columnName)?.columnType;
+	if (c === void 0) throw m(`Column does not exist: ${a.columnName}`);
+	if (c !== n.columnType) throw m(`The column type of cohort '${a.cohortName}' (${n.columnType}) does not match ${a.columnName} (${c}).`);
+	let l = a.columnName === "individualId" || e.profile.participantAttributes.some((e) => e.name === a.columnName && e.isQuasiIdentifier);
+	if (i === "AGGREGATE_ONLY" && !l) throw new p(403, {
+		concreteType: "org.sagebionetworks.repo.model.ErrorResponse",
+		reason: `A cohort from an aggregate-only source can only filter a quasi-identifier column, and ${a.columnName} is not one.`
+	});
+}
+function X(e, t, n, r, i) {
+	let a = t.query.cohorts ?? [], o = K(t.query.additionalFilters ?? []);
+	if (a.length > U) throw m(`A query can define at most ${U} cohorts.`);
+	let s = /* @__PURE__ */ new Set();
+	for (let { name: e } of a) {
+		if (!W.test(e)) throw m(`Cohort name must be a simple identifier: ${e}`);
+		if (s.has(e)) throw m(`Cohort names must be unique: ${e}`);
+		s.add(e);
+	}
+	let c = new Set(o.map((e) => e.filter.cohortName));
+	for (let e of c) if (!s.has(e)) throw m(`Cohort is not defined: ${e}`);
+	for (let e of s) if (!c.has(e)) throw m(`Cohort is defined but never referenced: ${e}`);
+	let l = new Map(a.map((t) => [t.name, q(e, t)]));
+	for (let t of o) Y(e, t, l.get(t.filter.cohortName), r, n);
+	return new Map(Array.from(l, ([r, a]) => [r, J(e, a, t, n, i)]));
+}
+function Z(e, t, n, r) {
+	let i = P(e.profile, t.entityId), a = h(e)[i === "PARTICIPANTS" ? "participants" : "dataReferences"], o = new Set(a.filter((e) => e.columnType?.endsWith("_LIST")).map((e) => e.name)), s = t.partMask ?? 0, { query: c } = t, l = F(e.profile, t, n);
+	I(i, s, l !== void 0);
+	let u = R(e, i, c, {
+		listColumnNames: o,
+		cohortValues: X(e, t, n, a, r.maxCohortValues ?? 1e4)
+	});
+	L(u.rows.length, l);
+	let p = { concreteType: "org.sagebionetworks.repo.model.table.QueryResultBundle" }, m = a.map(({ id: e, name: t, columnType: n }) => ({
+		id: e,
+		name: t,
+		columnType: n
+	}));
+	return s & 1 && (p.queryResult = z(t.entityId, a, m, u.rows, c)), s & 2 && (p.queryCount = u.rows.length), s & 4 && (p.selectColumns = m), s & 8 && (p.maxRowsPerPage = f), s & 16 && (p.columnModels = a), s & 32 && (p.facets = B(a, c, u, l), p.facetPostProcessingApplied = l?.facetPostProcessingConfig !== void 0), s & 128 && (p.lastUpdatedOn = d), s & 256 && (p.combinedSql = V(t.entityId, c.additionalFilters ?? [])), p;
+}
+function Q(e, t, n, r = {}) {
+	try {
+		return {
+			status: 200,
+			body: Z(e, t, n, r)
+		};
+	} catch (e) {
+		if (e instanceof p) return {
+			status: e.status,
+			body: e.body
+		};
+		throw e;
+	}
+}
+//#endregion
+export { s as MOCK_BELOW_THRESHOLD_HTTP_STATUS, H as MOCK_MAX_COHORT_VALUES, c as MOCK_ROW_SUPPRESSED_HTTP_STATUS, h as getCohortBuilderColumnModels, Q as runCohortBuilderMockQuery };
+
+//# sourceMappingURL=cohortBuilderMockQueryEngine.js.map

package/dist/mocks/cohortBuilder/cohortBuilderMockQueryEngine.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"cohortBuilderMockQueryEngine.js","names":[],"sources":["../../../src/mocks/cohortBuilder/cohortBuilderMockQueryEngine.ts"],"sourcesContent":["import {\n  BUNDLE_MASK_COMBINED_SQL,\n  BUNDLE_MASK_LAST_UPDATED_ON,\n  BUNDLE_MASK_QUERY_COLUMN_MODELS,\n  BUNDLE_MASK_QUERY_COUNT,\n  BUNDLE_MASK_QUERY_FACETS,\n  BUNDLE_MASK_QUERY_MAX_ROWS_PER_PAGE,\n  BUNDLE_MASK_QUERY_RESULTS,\n  BUNDLE_MASK_QUERY_SELECT_COLUMNS,\n} from '@/utils/SynapseConstants'\nimport { AggregateDataConfiguration } from '@sage-bionetworks/synapse-client/generated/models/AggregateDataConfiguration'\nimport { BelowThresholdErrorResponse } from '@sage-bionetworks/synapse-client/generated/models/BelowThresholdErrorResponse'\nimport { ColumnModel } from '@sage-bionetworks/synapse-client/generated/models/ColumnModel'\nimport { ErrorResponse } from '@sage-bionetworks/synapse-client/generated/models/ErrorResponse'\nimport { FacetColumnResult } from '@sage-bionetworks/synapse-client/generated/models/FacetColumnResult'\nimport { QueryResultBundle } from '@sage-bionetworks/synapse-client/generated/models/QueryResultBundle'\nimport { RowSuppressionErrorResponse } from '@sage-bionetworks/synapse-client/generated/models/RowSuppressionErrorResponse'\nimport { TableQueryResult } from '@sage-bionetworks/synapse-client/generated/models/TableQueryResult'\nimport { TableSelectColumn } from '@sage-bionetworks/synapse-client/generated/models/TableSelectColumn'\nimport {\n  CohortDefinition,\n  ColumnCohortFilter,\n  ColumnMultiValueFunction,\n  ColumnMultiValueFunctionQueryFilter,\n  ColumnSingleValueFilterOperator,\n  ColumnSingleValueQueryFilter,\n  FacetColumnRequest,\n  Query,\n  QueryBundleRequest,\n  QueryFilter,\n  SortItem,\n} from '@sage-bionetworks/synapse-types'\nimport {\n  CohortBuilderMockProfile,\n  DATA_REFERENCE_COLUMN_NAME,\n  PARTICIPANT_ID_COLUMN_NAME,\n  REFERENCE_TYPE_COLUMN_NAME,\n  STUDY_COLUMN_NAME,\n} from './cohortBuilderMockProfiles'\nimport {\n  CohortBuilderSyntheticData,\n  createSeededRandom,\n  MaterialRow,\n} from './cohortBuilderSyntheticData'\n\n/**\n * Which access tier the mocked caller has on the participants source:\n * - `FULL`: the caller met the access requirement (exact results, rows allowed).\n * - `AGGREGATE_ONLY`: authenticated but unapproved (count gate, post-processed\n *   facets, no participant rows).\n */\nexport type CohortBuilderAccess = 'FULL' | 'AGGREGATE_ONLY'\n\nexport type CohortBuilderMockErrorBody =\n  | ErrorResponse\n  | BelowThresholdErrorResponse\n  | RowSuppressionErrorResponse\n\nexport type CohortBuilderMockQueryResult =\n  | { status: 200; body: QueryResultBundle }\n  | { status: number; body: CohortBuilderMockErrorBody }\n\nexport const MOCK_BELOW_THRESHOLD_HTTP_STATUS = 403\nexport const MOCK_ROW_SUPPRESSED_HTTP_STATUS = 403\n\nconst DATA_VIRTUAL_TABLE_ID_COLUMN_NAME = 'id'\nconst DATA_VIRTUAL_TABLE_NAME_COLUMN_NAME = 'name'\nconst MOCK_LAST_UPDATED_ON = '2026-10-01T00:00:00.000Z'\nconst MOCK_MAX_ROWS_PER_PAGE = 1000\n\ntype CellValue = string | number | readonly string[]\ntype VirtualTableRow = Readonly<Record<string, CellValue>>\ntype Perspective = 'PARTICIPANTS' | 'DATA'\n\nclass MockQueryError extends Error {\n  constructor(\n    readonly status: number,\n    readonly body: CohortBuilderMockErrorBody,\n  ) {\n    super(body.reason)\n  }\n}\n\nfunction invalidQuery(reason: string): MockQueryError {\n  return new MockQueryError(400, {\n    concreteType: 'org.sagebionetworks.repo.model.ErrorResponse',\n    reason,\n  })\n}\n\n/** Column models of both VirtualTables, derived from the synthetic data's profile. */\nexport function getCohortBuilderColumnModels(data: CohortBuilderSyntheticData) {\n  const { profile, dataAttributeNames } = data\n  let nextColumnId = 1\n  const column = (\n    name: string,\n    columnType: ColumnModel['columnType'],\n    isFaceted: boolean,\n  ): ColumnModel => ({\n    id: String(nextColumnId++),\n    name,\n    columnType,\n    facetType: isFaceted ? 'enumeration' : undefined,\n  })\n  const participants: ColumnModel[] = [\n    column(PARTICIPANT_ID_COLUMN_NAME, 'STRING', false),\n    column(STUDY_COLUMN_NAME, 'STRING', true),\n    ...profile.participantAttributes.map(attribute =>\n      column(attribute.name, 'STRING', true),\n    ),\n    ...dataAttributeNames.map(name => column(name, 'STRING_LIST', true)),\n  ]\n  const dataReferences: ColumnModel[] = [\n    column(DATA_VIRTUAL_TABLE_ID_COLUMN_NAME, 'ENTITYID', false),\n    column(DATA_VIRTUAL_TABLE_NAME_COLUMN_NAME, 'STRING', false),\n    column(REFERENCE_TYPE_COLUMN_NAME, 'STRING', true),\n    column(STUDY_COLUMN_NAME, 'STRING', true),\n    ...dataAttributeNames.map(name => column(name, 'STRING', true)),\n  ]\n  return { participants, dataReferences }\n}\n\n// -----------------------------------------------------------------------------\n// Filter evaluation\n// -----------------------------------------------------------------------------\n\nfunction likeToRegExp(pattern: string): RegExp {\n  const escaped = pattern\n    .replaceAll(/[.*+?^${}()|[\\]\\\\]/g, String.raw`\\$&`)\n    .replaceAll('%', '.*')\n    .replaceAll('_', '.')\n  return new RegExp(`^${escaped}$`, 'i')\n}\n\nfunction compareCellValues(a: string | number, b: string | number): number {\n  const aNumber = Number(a)\n  const bNumber = Number(b)\n  if (Number.isFinite(aNumber) && Number.isFinite(bNumber)) {\n    return aNumber - bNumber\n  }\n  return String(a).localeCompare(String(b))\n}\n\nfunction singleValueMatches(\n  value: string | number,\n  operator: ColumnSingleValueFilterOperator,\n  values: readonly string[],\n): boolean {\n  switch (operator) {\n    case ColumnSingleValueFilterOperator.EQUAL:\n    case ColumnSingleValueFilterOperator.IN:\n      return values.includes(String(value))\n    case ColumnSingleValueFilterOperator.LIKE:\n      return values.some(pattern => likeToRegExp(pattern).test(String(value)))\n    case ColumnSingleValueFilterOperator.NOT_EQUAL:\n      return values.every(v => String(value) !== v)\n    case ColumnSingleValueFilterOperator.GREATER_THAN:\n      return compareCellValues(value, values[0]) > 0\n    case ColumnSingleValueFilterOperator.GREATER_THAN_OR_EQUAL:\n      return compareCellValues(value, values[0]) >= 0\n    case ColumnSingleValueFilterOperator.LESS_THAN:\n      return compareCellValues(value, values[0]) < 0\n    case ColumnSingleValueFilterOperator.LESS_THAN_OR_EQUAL:\n      return compareCellValues(value, values[0]) <= 0\n    case ColumnSingleValueFilterOperator.BETWEEN:\n      return (\n        compareCellValues(value, values[0]) >= 0 &&\n        compareCellValues(value, values[1]) <= 0\n      )\n    default:\n      throw invalidQuery(`Unsupported operator: ${operator}`)\n  }\n}\n\nfunction singleValueFilterMatches(\n  row: VirtualTableRow | MaterialRow,\n  filter: ColumnSingleValueQueryFilter,\n): boolean {\n  if (!(filter.columnName in row)) {\n    throw invalidQuery(`Column does not exist: ${filter.columnName}`)\n  }\n  const cell = row[filter.columnName]\n  const isEmpty = Array.isArray(cell) ? cell.length === 0 : cell === ''\n  if (filter.operator === ColumnSingleValueFilterOperator.IS_NULL) {\n    return isEmpty\n  }\n  if (filter.operator === ColumnSingleValueFilterOperator.IS_NOT_NULL) {\n    return !isEmpty\n  }\n  const cellValues: readonly (string | number)[] = Array.isArray(cell)\n    ? cell\n    : [cell as string | number]\n  return cellValues.some(value =>\n    singleValueMatches(value, filter.operator, filter.values),\n  )\n}\n\n/** What a filter needs beyond the row: which columns are lists, and the resolved values of each request-scoped cohort. */\ntype FilterContext = {\n  listColumnNames: ReadonlySet<string>\n  cohortValues: ReadonlyMap<string, ReadonlySet<string>>\n}\n\nfunction multiValueFilterMatches(\n  row: VirtualTableRow | MaterialRow,\n  filter: ColumnMultiValueFunctionQueryFilter,\n  context: FilterContext,\n): boolean {\n  if (!context.listColumnNames.has(filter.columnName)) {\n    throw invalidQuery(\n      `${filter.function} can only be used on a multi-value (list) column: ${filter.columnName}`,\n    )\n  }\n  const cell = row[filter.columnName] as readonly string[]\n  if (filter.function === ColumnMultiValueFunction.HAS_LIKE) {\n    return filter.values.some(pattern =>\n      cell.some(value => likeToRegExp(pattern).test(value)),\n    )\n  }\n  return cell.some(value => filter.values.includes(value))\n}\n\nfunction cohortFilterMatches(\n  row: VirtualTableRow | MaterialRow,\n  filter: ColumnCohortFilter,\n  context: FilterContext,\n): boolean {\n  // A plain cohort filter must name a column of the queried table; a defining one is evaluated on MATERIAL rows.\n  if (!(filter.columnName in row)) {\n    throw invalidQuery(`Column does not exist: ${filter.columnName}`)\n  }\n  // An empty cohort expands to IN (NULL), which matches nothing.\n  return (\n    context.cohortValues\n      .get(filter.cohortName)\n      ?.has(String(row[filter.columnName])) ?? false\n  )\n}\n\n/** Evaluates a query filter against one row. */\nfunction filterMatches(\n  row: VirtualTableRow | MaterialRow,\n  filter: QueryFilter,\n  context: FilterContext,\n): boolean {\n  switch (filter.concreteType) {\n    case 'org.sagebionetworks.repo.model.table.FilterGroup': {\n      const children = filter.children ?? []\n      const matches =\n        filter.operator === 'OR'\n          ? children.some(child => filterMatches(row, child, context))\n          : children.every(child => filterMatches(row, child, context))\n      return filter.not ? !matches : matches\n    }\n    case 'org.sagebionetworks.repo.model.table.ColumnSingleValueQueryFilter':\n      return singleValueFilterMatches(row, filter)\n    case 'org.sagebionetworks.repo.model.table.ColumnMultiValueFunctionQueryFilter':\n      return multiValueFilterMatches(row, filter, context)\n    case 'org.sagebionetworks.repo.model.table.ColumnCohortFilter':\n      return cohortFilterMatches(row, filter, context)\n    default:\n      throw invalidQuery(\n        `The Cohort Builder mock does not support ${filter.concreteType}`,\n      )\n  }\n}\n\nfunction facetSelectionMatches(\n  row: VirtualTableRow,\n  selection: FacetColumnRequest,\n): boolean {\n  const cell = row[selection.columnName]\n  const cellValues: readonly (string | number)[] = Array.isArray(cell)\n    ? cell\n    : [cell as string | number]\n  if (\n    selection.concreteType ===\n    'org.sagebionetworks.repo.model.table.FacetColumnValuesRequest'\n  ) {\n    return cellValues.some(value =>\n      selection.facetValues.includes(String(value)),\n    )\n  }\n  return cellValues.some(\n    value =>\n      (selection.min === undefined ||\n        compareCellValues(value, selection.min) >= 0) &&\n      (selection.max === undefined ||\n        compareCellValues(value, selection.max) <= 0),\n  )\n}\n\n// -----------------------------------------------------------------------------\n// VirtualTable materialization (the defining SQL's GROUP BY)\n// -----------------------------------------------------------------------------\n\nfunction groupByParticipant(\n  rows: readonly MaterialRow[],\n  data: CohortBuilderSyntheticData,\n): VirtualTableRow[] {\n  const byParticipant = new Map<string, MaterialRow[]>()\n  for (const row of rows) {\n    const participantId = row[PARTICIPANT_ID_COLUMN_NAME]\n    const group = byParticipant.get(participantId)\n    if (group) {\n      group.push(row)\n    } else {\n      byParticipant.set(participantId, [row])\n    }\n  }\n  return Array.from(byParticipant.values(), group => {\n    const first = group[0]\n    const participantRow: Record<string, CellValue> = {\n      [PARTICIPANT_ID_COLUMN_NAME]: first[PARTICIPANT_ID_COLUMN_NAME],\n      [STUDY_COLUMN_NAME]: first[STUDY_COLUMN_NAME],\n    }\n    for (const attribute of data.profile.participantAttributes) {\n      participantRow[attribute.name] = first[attribute.name]\n    }\n    for (const name of data.dataAttributeNames) {\n      participantRow[name] = Array.from(\n        new Set(group.map(row => row[name])),\n      ).sort((a, b) => a.localeCompare(b))\n    }\n    return participantRow\n  })\n}\n\nfunction groupByDataReference(\n  rows: readonly MaterialRow[],\n  data: CohortBuilderSyntheticData,\n): VirtualTableRow[] {\n  const referenceIds = new Set(rows.map(row => row[DATA_REFERENCE_COLUMN_NAME]))\n  return Array.from(referenceIds, referenceId => {\n    const reference = data.references.get(referenceId)!\n    return {\n      [DATA_VIRTUAL_TABLE_ID_COLUMN_NAME]: reference.id,\n      [DATA_VIRTUAL_TABLE_NAME_COLUMN_NAME]: reference.name,\n      [REFERENCE_TYPE_COLUMN_NAME]: reference.referenceType,\n      [STUDY_COLUMN_NAME]: reference.study,\n      ...reference.attributes,\n    }\n  })\n}\n\n// -----------------------------------------------------------------------------\n// Facets and post-processing\n// -----------------------------------------------------------------------------\n\nfunction hashString(value: string): number {\n  // FNV-1a, 32-bit\n  let hash = 0x811c9dc5\n  for (const character of value) {\n    hash ^= character.codePointAt(0)!\n    hash = Math.imul(hash, 0x01000193)\n  }\n  return hash >>> 0\n}\n\n/**\n * Adds Laplace noise (scale 1/epsilon) and clamps at zero, like the backend's\n * NOISE algorithm. The mock derives the noise from `noiseKey` so a re-render of\n * the same query shows the same counts; the backend re-samples per execution.\n */\nfunction addLaplaceNoise(\n  count: number,\n  epsilon: number,\n  noiseKey: string,\n): number {\n  const u = createSeededRandom(hashString(noiseKey))() - 0.5\n  const noise = -(1 / epsilon) * Math.sign(u) * Math.log(1 - 2 * Math.abs(u))\n  return Math.max(0, Math.round(count + noise))\n}\n\nfunction countFacetValues(\n  rows: readonly VirtualTableRow[],\n  columnName: string,\n): Map<string, number> {\n  const counts = new Map<string, number>()\n  for (const row of rows) {\n    const cell = row[columnName]\n    const values: readonly string[] =\n      typeof cell === 'object' ? cell : [String(cell)]\n    for (const value of values) {\n      counts.set(value, (counts.get(value) ?? 0) + 1)\n    }\n  }\n  return counts\n}\n\nfunction buildFacet(\n  columnName: string,\n  counts: ReadonlyMap<string, number>,\n  selectedValues: readonly string[],\n  aggregateConfig: AggregateDataConfiguration | undefined,\n  noiseKeyPrefix: string,\n): FacetColumnResult {\n  const sortedCounts = Array.from(counts).sort(\n    ([valueA, countA], [valueB, countB]) =>\n      countB - countA || valueA.localeCompare(valueB),\n  )\n  const postProcessing = aggregateConfig?.facetPostProcessingConfig\n  const parameters = postProcessing?.parameters\n  if (\n    postProcessing?.algorithm === 'ROUNDING' &&\n    parameters?.concreteType ===\n      'org.sagebionetworks.repo.model.FacetRoundingParameters'\n  ) {\n    const binSize = parameters.roundTo ?? 1\n    return {\n      concreteType:\n        'org.sagebionetworks.repo.model.table.FacetColumnResultBinnedValues',\n      columnName,\n      facetType: 'enumeration',\n      binSize,\n      binnedValues: sortedCounts.map(([value, count]) => ({\n        value,\n        binMin: Math.floor(count / binSize) * binSize,\n        isSelected: selectedValues.includes(value),\n      })),\n    }\n  }\n  const epsilon =\n    postProcessing?.algorithm === 'NOISE' &&\n    parameters?.concreteType ===\n      'org.sagebionetworks.repo.model.FacetNoiseParameters'\n      ? (parameters.epsilon ?? 1)\n      : undefined\n  return {\n    concreteType:\n      'org.sagebionetworks.repo.model.table.FacetColumnResultValues',\n    columnName,\n    facetType: 'enumeration',\n    facetValues: sortedCounts.map(([value, count]) => ({\n      value,\n      count:\n        epsilon === undefined\n          ? count\n          : addLaplaceNoise(\n              count,\n              epsilon,\n              `${noiseKeyPrefix}\\u0000${columnName}\\u0000${value}`,\n            ),\n      isSelected: selectedValues.includes(value),\n    })),\n  }\n}\n\n// -----------------------------------------------------------------------------\n// Combined SQL (for the Query Builder's SQL summary)\n// -----------------------------------------------------------------------------\n\nfunction sqlLiteral(value: string): string {\n  return `'${value.replaceAll(\"'\", \"''\")}'`\n}\n\nconst SQL_OPERATOR_BY_FILTER_OPERATOR: Partial<\n  Record<ColumnSingleValueFilterOperator, string>\n> = {\n  EQUAL: '=',\n  NOT_EQUAL: '<>',\n  GREATER_THAN: '>',\n  GREATER_THAN_OR_EQUAL: '>=',\n  LESS_THAN: '<',\n  LESS_THAN_OR_EQUAL: '<=',\n  LIKE: 'LIKE',\n}\n\nfunction filterToSql(filter: QueryFilter): string {\n  switch (filter.concreteType) {\n    case 'org.sagebionetworks.repo.model.table.FilterGroup': {\n      const joined = (filter.children ?? [])\n        .map(filterToSql)\n        .join(` ${filter.operator ?? 'AND'} `)\n      return `${filter.not ? 'NOT ' : ''}(${joined})`\n    }\n    case 'org.sagebionetworks.repo.model.table.ColumnSingleValueQueryFilter': {\n      const column = `\"${filter.columnName}\"`\n      switch (filter.operator) {\n        case ColumnSingleValueFilterOperator.IN:\n          return `${column} IN (${filter.values.map(sqlLiteral).join(', ')})`\n        case ColumnSingleValueFilterOperator.IS_NULL:\n          return `${column} IS NULL`\n        case ColumnSingleValueFilterOperator.IS_NOT_NULL:\n          return `${column} IS NOT NULL`\n        case ColumnSingleValueFilterOperator.BETWEEN:\n          return `${column} BETWEEN ${sqlLiteral(filter.values[0])} AND ${sqlLiteral(filter.values[1])}`\n        default: {\n          const sqlOperator = SQL_OPERATOR_BY_FILTER_OPERATOR[filter.operator]\n          const predicates = filter.values.map(\n            value => `${column} ${sqlOperator} ${sqlLiteral(value)}`,\n          )\n          return predicates.length === 1\n            ? predicates[0]\n            : `(${predicates.join(' OR ')})`\n        }\n      }\n    }\n    case 'org.sagebionetworks.repo.model.table.ColumnMultiValueFunctionQueryFilter':\n      return `\"${filter.columnName}\" ${filter.function} (${filter.values.map(sqlLiteral).join(', ')})`\n    case 'org.sagebionetworks.repo.model.table.ColumnCohortFilter':\n      return `\"${filter.columnName}\" IN COHORT(${filter.cohortName})`\n    default:\n      return ''\n  }\n}\n\n// -----------------------------------------------------------------------------\n// Query execution\n// -----------------------------------------------------------------------------\n\nfunction sortRows(\n  rows: VirtualTableRow[],\n  sort: readonly SortItem[] | undefined,\n): VirtualTableRow[] {\n  if (!sort || sort.length === 0) {\n    return rows\n  }\n  return [...rows].sort((a, b) => {\n    for (const { column, direction } of sort) {\n      const toComparable = (cell: CellValue) =>\n        Array.isArray(cell) ? cell.join(',') : (cell as string | number)\n      const comparison = compareCellValues(\n        toComparable(a[column]),\n        toComparable(b[column]),\n      )\n      if (comparison !== 0) {\n        return direction === 'DESC' ? -comparison : comparison\n      }\n    }\n    return 0\n  })\n}\n\nfunction getPerspective(\n  profile: CohortBuilderMockProfile,\n  entityId: string,\n): Perspective {\n  if (entityId === profile.participantsVirtualTableId) {\n    return 'PARTICIPANTS'\n  }\n  if (entityId === profile.dataVirtualTableId) {\n    return 'DATA'\n  }\n  throw new MockQueryError(404, {\n    concreteType: 'org.sagebionetworks.repo.model.ErrorResponse',\n    reason: `The Cohort Builder mock has no table ${entityId}`,\n  })\n}\n\nfunction getAggregateConfig(\n  profile: CohortBuilderMockProfile,\n  request: QueryBundleRequest,\n  access: CohortBuilderAccess,\n): AggregateDataConfiguration | undefined {\n  // A data manager's preview applies only to callers who already have full access.\n  if (access === 'FULL') {\n    return request.aggregateDataPreview\n  }\n  return {\n    suppressionThreshold: profile.suppressionThreshold,\n    countSuppressionStrategy: profile.countSuppressionStrategy,\n    facetPostProcessingConfig: profile.facetPostProcessingConfig,\n  }\n}\n\nfunction assertRowsAllowed(\n  perspective: Perspective,\n  partMask: number,\n  isAggregateOnlyRead: boolean,\n): void {\n  // The participant VT projects individualId, a quasi-identifier, so the backend withholds its rows during preflight\n  // from aggregate-only callers and from data manager previews.\n  if (\n    isAggregateOnlyRead &&\n    perspective === 'PARTICIPANTS' &&\n    (partMask & BUNDLE_MASK_QUERY_RESULTS) !== 0\n  ) {\n    throw new MockQueryError(MOCK_ROW_SUPPRESSED_HTTP_STATUS, {\n      concreteType:\n        'org.sagebionetworks.repo.model.table.RowSuppressionErrorResponse',\n      reason:\n        'Row results are withheld because the query projects a quasi-identifier column. Re-run the query without requesting row results.',\n      errorCode: 'ROW_SUPPRESSED',\n      rowSuppressionReasonCode: 'QID_PROJECTED',\n    })\n  }\n}\n\nfunction assertAboveSuppressionThreshold(\n  matchedRowCount: number,\n  aggregateConfig: AggregateDataConfiguration | undefined,\n): void {\n  if (!aggregateConfig) {\n    return\n  }\n  // Like the backend's COUNT(*) gate, both perspectives count the rows of the\n  // queried VirtualTable: participants, or files and datasets.\n  const threshold = aggregateConfig.suppressionThreshold\n  if (matchedRowCount > 0 && matchedRowCount < threshold) {\n    throw new MockQueryError(MOCK_BELOW_THRESHOLD_HTTP_STATUS, {\n      concreteType:\n        'org.sagebionetworks.repo.model.table.BelowThresholdErrorResponse',\n      reason: `The number of records matched by this query is below the minimum threshold of ${threshold} required to return a result.`,\n      errorCode: 'BELOW_THRESHOLD',\n      suppressionThreshold: threshold,\n    })\n  }\n}\n\ntype MatchedRows = {\n  rows: VirtualTableRow[]\n  /** The matching rows when one column's facet selection is ignored, as that column's facet counts require. */\n  ignoringFacetSelection: (columnName: string) => VirtualTableRow[]\n}\n\nfunction matchRows(\n  data: CohortBuilderSyntheticData,\n  perspective: Perspective,\n  query: Query,\n  context: FilterContext,\n): MatchedRows {\n  const additionalFilters = query.additionalFilters ?? []\n  const selectedFacets = query.selectedFacets ?? []\n  const definingFilters = additionalFilters.filter(\n    filter => filter.isDefiningCondition,\n  )\n  const outerFilters = additionalFilters.filter(\n    filter => !filter.isDefiningCondition,\n  )\n  // MATERIAL columns are all scalars.\n  const materialContext: FilterContext = {\n    ...context,\n    listColumnNames: new Set(),\n  }\n  const materialRows = data.materialRows.filter(row =>\n    definingFilters.every(filter =>\n      filterMatches(row, filter, materialContext),\n    ),\n  )\n  const virtualTableRows =\n    perspective === 'PARTICIPANTS'\n      ? groupByParticipant(materialRows, data)\n      : groupByDataReference(materialRows, data)\n  const filterRows = (ignoredFacetColumnName?: string) =>\n    virtualTableRows.filter(\n      row =>\n        outerFilters.every(filter => filterMatches(row, filter, context)) &&\n        selectedFacets.every(\n          selection =>\n            selection.columnName === ignoredFacetColumnName ||\n            facetSelectionMatches(row, selection),\n        ),\n    )\n  return { rows: filterRows(), ignoringFacetSelection: filterRows }\n}\n\nfunction toQueryResult(\n  entityId: string,\n  columnModels: readonly ColumnModel[],\n  selectColumns: TableSelectColumn[],\n  rows: VirtualTableRow[],\n  query: Query,\n): TableQueryResult {\n  const offset = query.offset ?? 0\n  const page = sortRows(rows, query.sort).slice(\n    offset,\n    offset + (query.limit ?? rows.length),\n  )\n  return {\n    concreteType: 'org.sagebionetworks.repo.model.table.QueryResult',\n    queryResults: {\n      concreteType: 'org.sagebionetworks.repo.model.table.RowSet',\n      tableId: entityId,\n      headers: selectColumns,\n      rows: page.map(row => ({\n        values: columnModels.map(({ name }) => {\n          const cell = row[name!]\n          return Array.isArray(cell) ? JSON.stringify(cell) : String(cell)\n        }),\n      })),\n    },\n  }\n}\n\nfunction buildFacets(\n  columnModels: readonly ColumnModel[],\n  query: Query,\n  matchedRows: MatchedRows,\n  aggregateConfig: AggregateDataConfiguration | undefined,\n): FacetColumnResult[] {\n  const selectedFacets = query.selectedFacets ?? []\n  const noiseKeyPrefix = JSON.stringify([\n    query.additionalFilters ?? [],\n    selectedFacets,\n  ])\n  return columnModels\n    .filter(column => column.facetType === 'enumeration')\n    .map(({ name }) => {\n      const selection = selectedFacets.find(facet => facet.columnName === name)\n      return buildFacet(\n        name!,\n        countFacetValues(matchedRows.ignoringFacetSelection(name!), name!),\n        selection?.concreteType ===\n          'org.sagebionetworks.repo.model.table.FacetColumnValuesRequest'\n          ? selection.facetValues\n          : [],\n        aggregateConfig,\n        noiseKeyPrefix,\n      )\n    })\n}\n\nfunction toCombinedSql(entityId: string, filters: readonly QueryFilter[]) {\n  const predicates = filters.map(filterToSql).filter(Boolean)\n  const where =\n    predicates.length > 0 ? ` WHERE ${predicates.join(' AND ')}` : ''\n  return `SELECT * FROM ${entityId}${where}`\n}\n\n// -----------------------------------------------------------------------------\n// Request-scoped cohorts (design doc §5)\n// -----------------------------------------------------------------------------\n\n/** The stack default of `org.sagebionetworks.table.query.cohort.max.values`. */\nexport const MOCK_MAX_COHORT_VALUES = 10_000\nconst MAX_COHORTS_PER_QUERY = 5\nconst COHORT_NAME_PATTERN = /^[A-Za-z_]\\w*$/\nconst COHORT_SQL_PATTERN = /^\\s*SELECT\\s+(\\w+)\\s+FROM\\s+(syn\\d+)\\s*$/i\n\nexport type CohortBuilderMockQueryOptions = {\n  /** Maximum number of distinct values in one cohort. Defaults to {@link MOCK_MAX_COHORT_VALUES}. */\n  maxCohortValues?: number\n}\n\ntype CohortReference = {\n  filter: ColumnCohortFilter\n  /** True when the filter, or the top-level filter containing it, is a defining condition. */\n  isDefining: boolean\n}\n\nfunction findCohortReferences(\n  filters: readonly QueryFilter[],\n  isDefining = false,\n): CohortReference[] {\n  return filters.flatMap(filter => {\n    const filterIsDefining = isDefining || filter.isDefiningCondition === true\n    if (\n      filter.concreteType === 'org.sagebionetworks.repo.model.table.FilterGroup'\n    ) {\n      return findCohortReferences(filter.children ?? [], filterIsDefining)\n    }\n    return filter.concreteType ===\n      'org.sagebionetworks.repo.model.table.ColumnCohortFilter'\n      ? [{ filter, isDefining: filterIsDefining }]\n      : []\n  })\n}\n\ntype ParsedCohort = {\n  name: string\n  query: Query\n  perspective: Perspective\n  columnName: string\n  columnType: string\n  columnModels: ColumnModel[]\n}\n\n/** Validates a cohort definition's shape without running it. */\nfunction parseCohort(\n  data: CohortBuilderSyntheticData,\n  cohort: CohortDefinition,\n): ParsedCohort {\n  const { name, query } = cohort\n  if (\n    (query.cohorts?.length ?? 0) > 0 ||\n    findCohortReferences(query.additionalFilters ?? []).length > 0\n  ) {\n    throw invalidQuery(`Cohort '${name}' cannot reference other cohorts.`)\n  }\n  if (\n    (query.sort?.length ?? 0) > 0 ||\n    query.limit !== undefined ||\n    query.offset !== undefined\n  ) {\n    throw invalidQuery(`Cohort '${name}' cannot use sort, limit or offset.`)\n  }\n  const sqlMatch = COHORT_SQL_PATTERN.exec(query.sql)\n  if (!sqlMatch) {\n    throw invalidQuery(\n      `Cohort '${name}' must select exactly one plain column from a single table.`,\n    )\n  }\n  const [, columnName, tableId] = sqlMatch\n  const perspective = getPerspective(data.profile, tableId)\n  const columnModels =\n    getCohortBuilderColumnModels(data)[\n      perspective === 'PARTICIPANTS' ? 'participants' : 'dataReferences'\n    ]\n  const column = columnModels.find(model => model.name === columnName)\n  if (!column?.columnType || column.columnType.endsWith('_LIST')) {\n    throw invalidQuery(\n      `Cohort '${name}' must select a non-list column of ${tableId}: ${columnName}`,\n    )\n  }\n  return {\n    name,\n    query,\n    perspective,\n    columnName,\n    columnType: column.columnType,\n    columnModels,\n  }\n}\n\n/** Runs a parsed cohort query as the caller and returns the cohort's distinct values. */\nfunction runCohortQuery(\n  data: CohortBuilderSyntheticData,\n  cohort: ParsedCohort,\n  request: QueryBundleRequest,\n  access: CohortBuilderAccess,\n  maxCohortValues: number,\n): Set<string> {\n  const { rows } = matchRows(data, cohort.perspective, cohort.query, {\n    listColumnNames: new Set(\n      cohort.columnModels\n        .filter(model => model.columnType?.endsWith('_LIST'))\n        .map(model => model.name!),\n    ),\n    cohortValues: new Map(),\n  })\n  const values = new Set(rows.map(row => String(row[cohort.columnName])))\n  if (values.size > maxCohortValues) {\n    throw new MockQueryError(400, {\n      concreteType: 'org.sagebionetworks.repo.model.ErrorResponse',\n      reason: `Cohort '${cohort.name}' exceeds the maximum of ${maxCohortValues} values.`,\n      errorCode: 'COHORT_TOO_LARGE',\n    })\n  }\n  if (access === 'AGGREGATE_ONLY') {\n    assertAboveSuppressionThreshold(\n      values.size,\n      getAggregateConfig(data.profile, request, access),\n    )\n  }\n  return values\n}\n\nfunction assertCohortReferenceAllowed(\n  data: CohortBuilderSyntheticData,\n  reference: CohortReference,\n  cohort: ParsedCohort,\n  columnModels: readonly ColumnModel[],\n  access: CohortBuilderAccess,\n): void {\n  const { filter, isDefining } = reference\n  // A defining-condition filter is resolved against the VirtualTable's source (MATERIAL), whose columns are strings.\n  const sourceColumnType =\n    data.materialRows.length > 0 && filter.columnName in data.materialRows[0]\n      ? 'STRING'\n      : undefined\n  const referencedColumnType = isDefining\n    ? sourceColumnType\n    : columnModels.find(model => model.name === filter.columnName)?.columnType\n  if (referencedColumnType === undefined) {\n    throw invalidQuery(`Column does not exist: ${filter.columnName}`)\n  }\n  if (referencedColumnType !== cohort.columnType) {\n    throw invalidQuery(\n      `The column type of cohort '${filter.cohortName}' (${cohort.columnType}) does not match ${filter.columnName} (${referencedColumnType}).`,\n    )\n  }\n  // §5.6: a cohort from an aggregate-only source may only filter a quasi-identifier column (of a query that is itself\n  // aggregate-only, which both mock VirtualTables are for this caller).\n  const isQuasiIdentifier =\n    filter.columnName === PARTICIPANT_ID_COLUMN_NAME ||\n    data.profile.participantAttributes.some(\n      attribute =>\n        attribute.name === filter.columnName && attribute.isQuasiIdentifier,\n    )\n  if (access === 'AGGREGATE_ONLY' && !isQuasiIdentifier) {\n    throw new MockQueryError(403, {\n      concreteType: 'org.sagebionetworks.repo.model.ErrorResponse',\n      reason: `A cohort from an aggregate-only source can only filter a quasi-identifier column, and ${filter.columnName} is not one.`,\n    })\n  }\n}\n\n/** Validates the query's cohorts and their references, runs each cohort query, and returns each cohort's values. */\nfunction resolveCohorts(\n  data: CohortBuilderSyntheticData,\n  request: QueryBundleRequest,\n  access: CohortBuilderAccess,\n  columnModels: readonly ColumnModel[],\n  maxCohortValues: number,\n): Map<string, Set<string>> {\n  const cohorts = request.query.cohorts ?? []\n  const references = findCohortReferences(request.query.additionalFilters ?? [])\n  if (cohorts.length > MAX_COHORTS_PER_QUERY) {\n    throw invalidQuery(\n      `A query can define at most ${MAX_COHORTS_PER_QUERY} cohorts.`,\n    )\n  }\n  const names = new Set<string>()\n  for (const { name } of cohorts) {\n    if (!COHORT_NAME_PATTERN.test(name)) {\n      throw invalidQuery(`Cohort name must be a simple identifier: ${name}`)\n    }\n    if (names.has(name)) {\n      throw invalidQuery(`Cohort names must be unique: ${name}`)\n    }\n    names.add(name)\n  }\n  const referencedNames = new Set(\n    references.map(reference => reference.filter.cohortName),\n  )\n  for (const name of referencedNames) {\n    if (!names.has(name)) {\n      throw invalidQuery(`Cohort is not defined: ${name}`)\n    }\n  }\n  for (const name of names) {\n    if (!referencedNames.has(name)) {\n      throw invalidQuery(`Cohort is defined but never referenced: ${name}`)\n    }\n  }\n  const parsed = new Map(\n    cohorts.map(cohort => [cohort.name, parseCohort(data, cohort)]),\n  )\n  for (const reference of references) {\n    assertCohortReferenceAllowed(\n      data,\n      reference,\n      parsed.get(reference.filter.cohortName)!,\n      columnModels,\n      access,\n    )\n  }\n  return new Map(\n    Array.from(parsed, ([name, cohort]) => [\n      name,\n      runCohortQuery(data, cohort, request, access, maxCohortValues),\n    ]),\n  )\n}\n\nfunction executeQuery(\n  data: CohortBuilderSyntheticData,\n  request: QueryBundleRequest,\n  access: CohortBuilderAccess,\n  options: CohortBuilderMockQueryOptions,\n): QueryResultBundle {\n  const perspective = getPerspective(data.profile, request.entityId)\n  const columnModels =\n    getCohortBuilderColumnModels(data)[\n      perspective === 'PARTICIPANTS' ? 'participants' : 'dataReferences'\n    ]\n  const listColumnNames = new Set(\n    columnModels\n      .filter(column => column.columnType?.endsWith('_LIST'))\n      .map(column => column.name!),\n  )\n  const partMask = request.partMask ?? 0\n  const { query } = request\n  const aggregateConfig = getAggregateConfig(data.profile, request, access)\n  assertRowsAllowed(perspective, partMask, aggregateConfig !== undefined)\n  const cohortValues = resolveCohorts(\n    data,\n    request,\n    access,\n    columnModels,\n    options.maxCohortValues ?? MOCK_MAX_COHORT_VALUES,\n  )\n  const matchedRows = matchRows(data, perspective, query, {\n    listColumnNames,\n    cohortValues,\n  })\n  assertAboveSuppressionThreshold(matchedRows.rows.length, aggregateConfig)\n\n  const bundle: QueryResultBundle = {\n    concreteType: 'org.sagebionetworks.repo.model.table.QueryResultBundle',\n  }\n  const selectColumns = columnModels.map(({ id, name, columnType }) => ({\n    id,\n    name,\n    columnType,\n  }))\n  if (partMask & BUNDLE_MASK_QUERY_RESULTS) {\n    bundle.queryResult = toQueryResult(\n      request.entityId,\n      columnModels,\n      selectColumns,\n      matchedRows.rows,\n      query,\n    )\n  }\n  if (partMask & BUNDLE_MASK_QUERY_COUNT) {\n    bundle.queryCount = matchedRows.rows.length\n  }\n  if (partMask & BUNDLE_MASK_QUERY_SELECT_COLUMNS) {\n    bundle.selectColumns = selectColumns\n  }\n  if (partMask & BUNDLE_MASK_QUERY_MAX_ROWS_PER_PAGE) {\n    bundle.maxRowsPerPage = MOCK_MAX_ROWS_PER_PAGE\n  }\n  if (partMask & BUNDLE_MASK_QUERY_COLUMN_MODELS) {\n    bundle.columnModels = columnModels\n  }\n  if (partMask & BUNDLE_MASK_QUERY_FACETS) {\n    bundle.facets = buildFacets(\n      columnModels,\n      query,\n      matchedRows,\n      aggregateConfig,\n    )\n    bundle.facetPostProcessingApplied =\n      aggregateConfig?.facetPostProcessingConfig !== undefined\n  }\n  if (partMask & BUNDLE_MASK_LAST_UPDATED_ON) {\n    bundle.lastUpdatedOn = MOCK_LAST_UPDATED_ON\n  }\n  if (partMask & BUNDLE_MASK_COMBINED_SQL) {\n    bundle.combinedSql = toCombinedSql(\n      request.entityId,\n      query.additionalFilters ?? [],\n    )\n  }\n  return bundle\n}\n\n/**\n * Emulates a Cohort Builder 2.0 table query against synthetic data, returning\n * either a QueryResultBundle or the error the backend would return.\n */\nexport function runCohortBuilderMockQuery(\n  data: CohortBuilderSyntheticData,\n  request: QueryBundleRequest,\n  access: CohortBuilderAccess,\n  options: CohortBuilderMockQueryOptions = {},\n): CohortBuilderMockQueryResult {\n  try {\n    return { status: 200, body: executeQuery(data, request, access, options) }\n  } catch (error) {\n    if (error instanceof MockQueryError) {\n      return { status: error.status, body: error.body }\n    }\n    throw error\n  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package/dist/mocks/cohortBuilder/cohortBuilderSyntheticData.d.ts

@@ -0,0 +1,26 @@
+import { CohortBuilderMockProfile } from './cohortBuilderMockProfiles';
+export type ReferenceType = 'FILE' | 'DATASET';
+/** One MATERIAL row: a participant joined to one file or dataset reference. */
+export type MaterialRow = Readonly<Record<string, string>>;
+export type SyntheticDataReference = {
+    id: string;
+    name: string;
+    referenceType: ReferenceType;
+    study: string;
+    attributes: Readonly<Record<string, string>>;
+};
+export type CohortBuilderSyntheticData = {
+    profile: CohortBuilderMockProfile;
+    dataAttributeNames: readonly string[];
+    references: ReadonlyMap<string, SyntheticDataReference>;
+    materialRows: readonly MaterialRow[];
+};
+export declare const DEFAULT_SYNTHETIC_DATA_SEED = 42;
+/** Mulberry32: a small, fast, seedable PRNG returning floats in [0, 1). */
+export declare function createSeededRandom(seed: number): () => number;
+/**
+ * Generates a deterministic synthetic participant ⋈ file/dataset dataset (the
+ * MATERIAL rows) from a mock profile.
+ */
+export declare function createCohortBuilderSyntheticData(profile: CohortBuilderMockProfile, seed?: number): CohortBuilderSyntheticData;
+//# sourceMappingURL=cohortBuilderSyntheticData.d.ts.map

package/dist/mocks/cohortBuilder/cohortBuilderSyntheticData.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"cohortBuilderSyntheticData.d.ts","sourceRoot":"","sources":["../../../src/mocks/cohortBuilder/cohortBuilderSyntheticData.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,wBAAwB,EASzB,MAAM,6BAA6B,CAAA;AAEpC,MAAM,MAAM,aAAa,GAAG,MAAM,GAAG,SAAS,CAAA;AAE9C,+EAA+E;AAC/E,MAAM,MAAM,WAAW,GAAG,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAAA;AAE1D,MAAM,MAAM,sBAAsB,GAAG;IACnC,EAAE,EAAE,MAAM,CAAA;IACV,IAAI,EAAE,MAAM,CAAA;IACZ,aAAa,EAAE,aAAa,CAAA;IAC5B,KAAK,EAAE,MAAM,CAAA;IACb,UAAU,EAAE,QAAQ,CAAC,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,CAAA;CAC7C,CAAA;AAED,MAAM,MAAM,0BAA0B,GAAG;IACvC,OAAO,EAAE,wBAAwB,CAAA;IACjC,kBAAkB,EAAE,SAAS,MAAM,EAAE,CAAA;IACrC,UAAU,EAAE,WAAW,CAAC,MAAM,EAAE,sBAAsB,CAAC,CAAA;IACvD,YAAY,EAAE,SAAS,WAAW,EAAE,CAAA;CACrC,CAAA;AAED,eAAO,MAAM,2BAA2B,KAAK,CAAA;AAQ7C,2EAA2E;AAC3E,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,MAAM,CAS7D;AAuMD;;;GAGG;AACH,wBAAgB,gCAAgC,CAC9C,OAAO,EAAE,wBAAwB,EACjC,IAAI,GAAE,MAAoC,GACzC,0BAA0B,CA2B5B"}

package/dist/mocks/cohortBuilder/cohortBuilderSyntheticData.js

@@ -0,0 +1,112 @@
+import { CORE_DATA_ATTRIBUTE_NAMES as e, DATA_REFERENCE_COLUMN_NAME as t, PARTICIPANT_ID_COLUMN_NAME as n, REFERENCE_TYPE_COLUMN_NAME as r, STUDY_COLUMN_NAME as i } from "./cohortBuilderMockProfiles.js";
+//#region src/mocks/cohortBuilder/cohortBuilderSyntheticData.ts
+var a = 42, o = 3, s = 4;
+function c(e) {
+	let t = e >>> 0;
+	return () => {
+		t = t + 1831565813 >>> 0;
+		let e = t;
+		return e = Math.imul(e ^ e >>> 15, e | 1), e ^= e + Math.imul(e ^ e >>> 7, e | 61), ((e ^ e >>> 14) >>> 0) / 4294967296;
+	};
+}
+function l(e, t) {
+	let n = Object.entries(t), r = n.reduce((e, [, t]) => e + t, 0), i = e() * r;
+	for (let [e, t] of n) if (i -= t, i < 0) return e;
+	return n.at(-1)[0];
+}
+function u(e, t) {
+	return t[Math.floor(e() * t.length)];
+}
+function d(e, t, n) {
+	let r = t.filter(() => e() < .6);
+	for (; r.length < n;) {
+		let n = u(e, t);
+		r.includes(n) || r.push(n);
+	}
+	return r;
+}
+function f(e, t, r, a) {
+	return Array.from({ length: r.participantCount }, (o, s) => {
+		let c = {
+			[n]: `${t.participantIdPrefix}-${String(a + s).padStart(6, "0")}`,
+			[i]: r.name
+		};
+		for (let n of t.participantAttributes) c[n.name] = l(e, n.values);
+		return c;
+	});
+}
+function p(e, n) {
+	let i = /* @__PURE__ */ new Map(), a = [], o = n.firstReferenceEntityId;
+	return {
+		random: e,
+		references: i,
+		materialRows: a,
+		addReference(t, r, a, s) {
+			let c = {
+				dataType: r.dataType,
+				assay: r.assay,
+				fileFormat: u(e, r.fileFormats)
+			};
+			for (let t of n.extraDataAttributeNames) c[t] = u(e, r.extraAttributes[t] ?? ["Unknown"]);
+			let l = {
+				id: `syn${o++}`,
+				name: s,
+				referenceType: a,
+				study: t.name,
+				attributes: c
+			};
+			return i.set(l.id, l), l;
+		},
+		link(e, n) {
+			for (let i of e) a.push({
+				...i,
+				[t]: n.id,
+				[r]: n.referenceType,
+				...n.attributes
+			});
+		}
+	};
+}
+function m(e, t, n) {
+	for (let r of t.assays) {
+		let i = e.addReference(t, r, "DATASET", `${t.name} ${r.assay} (synthetic)`);
+		e.link(n, i);
+	}
+}
+function h(e, t, n, r) {
+	let { random: i } = e;
+	for (let a = 1; a <= s; a++) {
+		let s = o + Math.floor(i() * 10), c = e.addReference(t, n, "FILE", `${t.name}_${n.assay}_batch${a}_matrix`), l = Math.floor(i() * Math.max(1, r.length - s));
+		e.link(r.slice(l, l + s), c);
+	}
+}
+function g(e, t, n) {
+	let r = new Map(t.assays.map((e) => [e, []]));
+	for (let i of n) for (let n of d(e.random, t.assays, 1)) {
+		r.get(n).push(i);
+		let a = e.addReference(t, n, "FILE", `${t.name}_${n.assay}_sample${String(e.references.size).padStart(5, "0")}`);
+		e.link([i], a);
+	}
+	for (let [n, i] of r) {
+		if (i.length === 0) continue;
+		let r = e.addReference(t, n, "FILE", `${t.name}_${n.assay}_all_participants_matrix`);
+		e.link(i, r), h(e, t, n, i);
+	}
+}
+function _(t, n = 42) {
+	let r = c(n), i = p(r, t), a = 1;
+	for (let e of t.studies) {
+		let n = f(r, t, e, a);
+		a += n.length, e.mapping === "DATASET" ? m(i, e, n) : g(i, e, n);
+	}
+	return {
+		profile: t,
+		dataAttributeNames: [...e, ...t.extraDataAttributeNames],
+		references: i.references,
+		materialRows: i.materialRows
+	};
+}
+//#endregion
+export { a as DEFAULT_SYNTHETIC_DATA_SEED, _ as createCohortBuilderSyntheticData, c as createSeededRandom };
+
+//# sourceMappingURL=cohortBuilderSyntheticData.js.map