synapse-react-client 4.0.3 → 4.0.5

package/dist/components/QueryWrapperPlotNav/QueryWrapperPlotNav.js.map

@@ -1 +1 @@
-{"version":3,"file":"QueryWrapperPlotNav.js","sources":["../../../src/components/QueryWrapperPlotNav/QueryWrapperPlotNav.tsx"],"sourcesContent":["import { QueryOrDeprecatedSearchParams } from '@/components/CardContainerLogic/CardContainerLogic'\nimport AddToDownloadListConfirmationAlert from '@/components/download_list/AddToDownloadListConfirmationAlert/AddToDownloadListConfirmationAlert'\nimport { useGetAddToDownloadListRequestForCurrentQuery } from '@/components/QueryWrapper/useGetAddToDownloadListRequestForCurrentQuery'\nimport { NoContentPlaceholderType } from '@/components/SynapseTable/NoContentPlaceholderType'\nimport { useGetEntity } from '@/synapse-queries'\nimport { SynapseConstants } from '@/utils'\nimport {\n  getAdditionalFilters,\n  parseEntityIdAndVersionFromSqlStatement,\n} from '@/utils/functions'\nimport { isTable } from '@/utils/functions/EntityTypeUtils'\nimport { DEFAULT_PAGE_SIZE } from '@/utils/SynapseConstants'\nimport { Box } from '@mui/material'\nimport { Query, QueryBundleRequest } from '@sage-bionetworks/synapse-types'\nimport { useQuery } from '@tanstack/react-query'\nimport { useAtomValue } from 'jotai'\nimport { useMemo, useState } from 'react'\nimport { CardConfiguration } from '../CardContainer/CardConfiguration'\nimport { SynapseErrorBoundary } from '../error'\nimport FullTextSearch from '../FullTextSearch/FullTextSearch'\nimport ModalDownload from '../ModalDownload/ModalDownload'\nimport { QueryWrapperPlotNavCustomPlotParams } from '../Plot/SynapsePlot'\nimport { QueryContextType, useQueryContext } from '../QueryContext'\nimport {\n  QueryVisualizationContextConsumer,\n  QueryVisualizationWrapper,\n  QueryVisualizationWrapperProps,\n} from '../QueryVisualizationWrapper'\nimport { QueryWrapper, QueryWrapperProps } from '../QueryWrapper'\nimport { isRowSelectionVisibleAtom } from '../QueryWrapper/TableRowSelectionState'\nimport { QueryWrapperErrorBoundary } from '../QueryWrapperErrorBoundary'\nimport { SynapseTableConfiguration } from '../SynapseTable'\nimport SearchV2, { SearchV2Props } from '../SynapseTable/SearchV2'\nimport SqlEditor from '../SynapseTable/SqlEditor'\nimport TopLevelControls, {\n  TopLevelControlsProps,\n  CustomControl,\n} from '../SynapseTable/TopLevelControls/TopLevelControls'\nimport { CustomControls } from '../SynapseTable/CustomControls/CustomControls'\nimport TotalQueryResults from '../TotalQueryResults'\nimport PlotsContainer, {\n  PlotsContainerProps,\n} from '../widgets/facet-nav/PlotsContainer'\nimport FacetFilterControls, {\n  FacetFilterControlsProps,\n} from '../widgets/query-filter/FacetFilterControls'\nimport { QueryWrapperSynapsePlotProps } from './QueryWrapperSynapsePlot'\nimport { RowSetView } from './RowSetView'\n\nexport const QUERY_FILTERS_EXPANDED_CSS: string = 'isShowingFacetFilters'\nexport const QUERY_FILTERS_COLLAPSED_CSS: string = 'isHidingFacetFilters'\n\nexport const HAS_SELECTED_ROWS_CSS: string = 'hasSelectedRows'\n\ntype QueryWrapperPlotNavOwnProps = {\n  /** Whether the displayed results should be paginated or infinite. Default for cards is true, default for table is false */\n  isInfinite?: boolean\n  /** Set to true when you want the query to be saved in the URL search parameters.  If you are controlling the view (such as in PortalSearch), you'll want to set this to false */\n  shouldDeepLink?: boolean\n  /** If onQueryChange is set, the callback will be invoked when the Query changes */\n  onQueryChange?: (newQueryJson: string) => void\n  /** If onQueryResultBundleChange is set, the callback will be invoked when the QueryResultBundle changes */\n  onQueryResultBundleChange?: (newQueryResultBundleJson: string) => void\n  /** If initQueryJson is set, it will be the Query used in the initial QueryBundleRequest */\n  initQueryJson?: string\n  tableConfiguration?: SynapseTableConfiguration\n  cardConfiguration?: CardConfiguration\n  searchConfiguration?: Omit<\n    SearchV2Props,\n    'queryContext' | 'queryVisualizationContext'\n  >\n  facetsToPlot?: string[]\n  availableFacets?: FacetFilterControlsProps['availableFacets']\n  initialExpandedFacetControls?: FacetFilterControlsProps['initialExpandedFacetControls']\n  customPlots?: QueryWrapperSynapsePlotProps[]\n  customControls?: CustomControl[]\n  defaultColumn?: string\n  defaultShowSearchBox?: boolean\n  lockedColumn?: QueryWrapperProps['lockedColumn']\n  onViewSharingSettingsClicked?: (benefactorId: string) => void\n  initialLimit?: number\n  hideTopLevelControls?: boolean\n} & Omit<TopLevelControlsProps, 'entityId'> &\n  Pick<QueryWrapperPlotNavCustomPlotParams, 'onCustomPlotClick'> &\n  Pick<\n    QueryWrapperProps,\n    | 'isRowSelectionVisible'\n    | 'rowSelectionPrimaryKey'\n    | 'isRowSelectionUIFloating'\n    | 'fileIdColumnName'\n    | 'fileNameColumnName'\n    | 'fileVersionColumnName'\n  > &\n  Pick<\n    QueryVisualizationWrapperProps,\n    | 'defaultShowPlots'\n    | 'visibleColumnCount'\n    | 'columnAliases'\n    | 'rgbIndex'\n    | 'showLastUpdatedOn'\n    | 'noContentPlaceholderType'\n    | 'unitDescription'\n    | 'additionalFiltersSessionStorageKey'\n    | 'helpConfiguration'\n    | 'hideCopyToClipboard'\n    | 'hideSearchBarControl'\n    | 'hideVisualizationsControl'\n    | 'enabledExternalAnalysisPlatforms'\n  > &\n  Pick<QueryContextType, 'combineRangeFacetConfig'>\n\nexport type QueryWrapperPlotNavProps = QueryOrDeprecatedSearchParams &\n  PlotsContainerProps &\n  QueryWrapperPlotNavOwnProps\n\ntype QueryWrapperPlotNavContentsProps = Pick<\n  QueryWrapperPlotNavProps,\n  | 'tableConfiguration'\n  | 'name'\n  | 'cardConfiguration'\n  | 'facetsToPlot'\n  | 'availableFacets'\n  | 'initialExpandedFacetControls'\n  | 'hideDownload'\n  | 'hideQueryCount'\n  | 'hideSqlEditorControl'\n  | 'hideVisualizationsControl'\n  | 'searchConfiguration'\n  | 'enabledExternalAnalysisPlatforms'\n  | 'cavaticaConnectAccountURL'\n  | 'customControls'\n  | 'customPlots'\n  | 'fileIdColumnName'\n  | 'fileNameColumnName'\n  | 'fileVersionColumnName'\n  | 'initialLimit'\n  | 'initialPlotType'\n  | 'hideTopLevelControls'\n> & {\n  isFullTextSearchEnabled: boolean\n  remount: () => void\n}\n\nfunction QueryWrapperPlotNavContents(props: QueryWrapperPlotNavContentsProps) {\n  const {\n    tableConfiguration,\n    name,\n    cardConfiguration,\n    facetsToPlot,\n    availableFacets,\n    initialExpandedFacetControls,\n    hideDownload,\n    hideQueryCount,\n    hideSqlEditorControl,\n    hideVisualizationsControl,\n    searchConfiguration,\n    cavaticaConnectAccountURL,\n    customControls,\n    remount,\n    isFullTextSearchEnabled,\n    customPlots,\n    initialLimit,\n    initialPlotType,\n    hideTopLevelControls,\n  } = props\n  const queryContext = useQueryContext()\n  const [showExportMetadata, setShowExportMetadata] = useState(false)\n  const { hasFacetedSelectColumn: isFaceted, queryMetadataQueryOptions } =\n    queryContext\n  const { isLoading: isLoadingQueryMetadata } = useQuery(\n    queryMetadataQueryOptions,\n  )\n\n  const isRowSelectionVisible = useAtomValue(isRowSelectionVisibleAtom)\n\n  const currentQueryRequest = queryContext.currentQueryRequest\n\n  const hasFacetsOrFilters =\n    (currentQueryRequest?.query.selectedFacets !== undefined &&\n      currentQueryRequest.query.selectedFacets.length > 0) ||\n    (currentQueryRequest?.query.additionalFilters !== undefined &&\n      currentQueryRequest?.query.additionalFilters.length > 0)\n\n  const addToDownloadListRequest =\n    useGetAddToDownloadListRequestForCurrentQuery()\n\n  return (\n    <QueryVisualizationContextConsumer>\n      {queryVisualizationContext => {\n        if (queryVisualizationContext === undefined) {\n          throw new Error(\n            'No queryVisualizationContext found when using QueryVisualizationContextConsumer',\n          )\n        }\n\n        return (\n          <Box\n            className={`QueryWrapperPlotNav ${\n              queryVisualizationContext.showFacetFilter\n                ? QUERY_FILTERS_EXPANDED_CSS\n                : QUERY_FILTERS_COLLAPSED_CSS\n            } ${isRowSelectionVisible ? HAS_SELECTED_ROWS_CSS : ''} ${\n              hideTopLevelControls ? 'isHidingTopLevelControls' : ''\n            }`}\n            sx={{\n              '*': {\n                cursor: isLoadingQueryMetadata ? 'wait' : undefined,\n              },\n            }}\n          >\n            <QueryWrapperErrorBoundary>\n              {isFullTextSearchEnabled ? (\n                <FullTextSearch ftsConfig={searchConfiguration?.ftsConfig} />\n              ) : (\n                <SearchV2\n                  {...searchConfiguration}\n                  queryContext={queryContext}\n                  queryVisualizationContext={queryVisualizationContext}\n                />\n              )}\n              <SqlEditor />\n              {queryVisualizationContext.showDownloadConfirmation && (\n                <AddToDownloadListConfirmationAlert\n                  addToDownloadListRequest={addToDownloadListRequest}\n                  onClose={() =>\n                    queryVisualizationContext.setShowDownloadConfirmation(false)\n                  }\n                />\n              )}\n              {!hideTopLevelControls && (\n                <SynapseErrorBoundary>\n                  <TopLevelControls\n                    showColumnSelection={tableConfiguration !== undefined}\n                    name={name}\n                    hideDownload={hideDownload}\n                    hideQueryCount={hideQueryCount}\n                    hideFacetFilterControl={!isFaceted}\n                    hideVisualizationsControl={\n                      !isFaceted || hideVisualizationsControl\n                    }\n                    hideSqlEditorControl={hideSqlEditorControl}\n                    cavaticaConnectAccountURL={cavaticaConnectAccountURL}\n                    remount={remount}\n                    customControls={customControls}\n                  />\n                </SynapseErrorBoundary>\n              )}\n              {isFaceted && (\n                <>\n                  <FacetFilterControls\n                    availableFacets={availableFacets}\n                    initialExpandedFacetControls={initialExpandedFacetControls}\n                  />\n                </>\n              )}\n              <TotalQueryResults\n                frontText={''}\n                endText={hasFacetsOrFilters ? 'filtered by' : ''}\n                hideIfUnfiltered={true}\n              />\n              <CustomControls\n                customControls={customControls}\n                remount={remount}\n              />\n              <PlotsContainer\n                facetsToPlot={facetsToPlot}\n                customPlots={customPlots}\n                initialPlotType={initialPlotType}\n              />\n              <RowSetView\n                tableConfiguration={tableConfiguration}\n                hideDownload={hideDownload}\n                cardConfiguration={cardConfiguration}\n                initialLimit={initialLimit}\n              />\n              {showExportMetadata && (\n                <ModalDownload\n                  getLastQueryRequest={queryContext?.getCurrentQueryRequest}\n                  onClose={() => setShowExportMetadata(false)}\n                />\n              )}\n            </QueryWrapperErrorBoundary>\n          </Box>\n        )\n      }}\n    </QueryVisualizationContextConsumer>\n  )\n}\n\nexport default function QueryWrapperPlotNav(props: QueryWrapperPlotNavProps) {\n  const {\n    sql: deprecatedSql,\n    tableConfiguration,\n    isInfinite = !tableConfiguration,\n    limit = DEFAULT_PAGE_SIZE,\n    showLastUpdatedOn,\n    unitDescription,\n    additionalFiltersSessionStorageKey,\n    helpConfiguration,\n    customPlots,\n    enabledExternalAnalysisPlatforms,\n  } = props\n\n  const sql = props.query?.sql ?? deprecatedSql ?? ''\n  const { entityId, versionNumber } =\n    parseEntityIdAndVersionFromSqlStatement(sql)\n\n  const query: Query = useMemo(() => {\n    if (props.query) {\n      // use query if set\n      return props.query\n    } else if (props.initQueryJson) {\n      // Otherwise use initQueryJson\n      return JSON.parse(props.initQueryJson) as Query\n    } else {\n      // use the deprecated sql, searchParams, and sqlOperator\n      const additionalFilters = getAdditionalFilters(\n        props.searchParams,\n        props.sqlOperator,\n        additionalFiltersSessionStorageKey,\n      )\n      return {\n        sql: deprecatedSql!,\n        additionalFilters,\n        limit: limit,\n        offset: 0,\n      }\n    }\n  }, [\n    props.query,\n    props.initQueryJson,\n    props.searchParams,\n    props.sqlOperator,\n    additionalFiltersSessionStorageKey,\n    deprecatedSql,\n    limit,\n  ])\n\n  const [componentKey, setComponentKey] = useState(1)\n  const remount = () => {\n    setComponentKey(componentKey + 1)\n  }\n\n  const { data: entity } = useGetEntity(entityId, versionNumber)\n  const initQueryRequest: QueryBundleRequest = {\n    entityId: entityId ?? '',\n    concreteType: 'org.sagebionetworks.repo.model.table.QueryBundleRequest',\n    partMask:\n      SynapseConstants.BUNDLE_MASK_QUERY_RESULTS |\n      SynapseConstants.BUNDLE_MASK_QUERY_COUNT |\n      SynapseConstants.BUNDLE_MASK_QUERY_SELECT_COLUMNS |\n      SynapseConstants.BUNDLE_MASK_QUERY_MAX_ROWS_PER_PAGE |\n      SynapseConstants.BUNDLE_MASK_QUERY_COLUMN_MODELS |\n      SynapseConstants.BUNDLE_MASK_QUERY_FACETS |\n      SynapseConstants.BUNDLE_MASK_SUM_FILES_SIZE_BYTES |\n      SynapseConstants.BUNDLE_MASK_LAST_UPDATED_ON,\n    query,\n  }\n  const isFullTextSearchEnabled =\n    (entity && isTable(entity) && entity.isSearchEnabled) ?? false\n\n  /**\n   * Fully re-render the uncontrolled QueryWrapper component when the initial query changes. This eliminates a class of\n   * bugs where our 'derived' state (the current query), which should be reset, is out of sync with props.\n   *\n   * See https://legacy.reactjs.org/blog/2018/06/07/you-probably-dont-need-derived-state.html#recommendation-fully-uncontrolled-component-with-a-key\n   */\n  const queryWrapperKey = `${JSON.stringify(initQueryRequest)}-${componentKey}`\n\n  return (\n    <QueryWrapper\n      {...props}\n      initQueryRequest={initQueryRequest}\n      key={queryWrapperKey}\n      isInfinite={isInfinite}\n    >\n      <QueryVisualizationWrapper\n        unitDescription={unitDescription}\n        rgbIndex={props.rgbIndex}\n        columnAliases={props.columnAliases}\n        helpConfiguration={helpConfiguration}\n        visibleColumnCount={props.visibleColumnCount}\n        defaultShowPlots={props.defaultShowPlots}\n        hideCopyToClipboard={props.hideCopyToClipboard}\n        defaultShowSearchBar={\n          (props.defaultShowSearchBox || isFullTextSearchEnabled) &&\n          !props.hideSearchBarControl\n        }\n        hideSearchBarControl={props.hideSearchBarControl}\n        showLastUpdatedOn={showLastUpdatedOn}\n        noContentPlaceholderType={NoContentPlaceholderType.INTERACTIVE}\n        hasCustomPlots={Array.isArray(customPlots) && customPlots.length > 0}\n        enabledExternalAnalysisPlatforms={enabledExternalAnalysisPlatforms}\n      >\n        <QueryWrapperPlotNavContents\n          {...props}\n          isFullTextSearchEnabled={isFullTextSearchEnabled}\n          remount={remount}\n        />\n      </QueryVisualizationWrapper>\n    </QueryWrapper>\n  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Default for cards is true, default for table is false */\n  isInfinite?: boolean\n  /** Set to true when you want the query to be saved in the URL search parameters.  If you are controlling the view (such as in PortalSearch), you'll want to set this to false */\n  shouldDeepLink?: boolean\n  /** If onQueryChange is set, the callback will be invoked when the Query changes */\n  onQueryChange?: (newQueryJson: string) => void\n  /** If onQueryResultBundleChange is set, the callback will be invoked when the QueryResultBundle changes */\n  onQueryResultBundleChange?: (newQueryResultBundleJson: string) => void\n  /** If initQueryJson is set, it will be the Query used in the initial QueryBundleRequest */\n  initQueryJson?: string\n  tableConfiguration?: SynapseTableConfiguration\n  cardConfiguration?: CardConfiguration\n  searchConfiguration?: Omit<\n    SearchV2Props,\n    'queryContext' | 'queryVisualizationContext'\n  >\n  facetsToPlot?: string[]\n  availableFacets?: FacetFilterControlsProps['availableFacets']\n  initialExpandedFacetControls?: FacetFilterControlsProps['initialExpandedFacetControls']\n  customPlots?: QueryWrapperSynapsePlotProps[]\n  customControls?: CustomControl[]\n  defaultColumn?: string\n  defaultShowSearchBox?: boolean\n  lockedColumn?: QueryWrapperProps['lockedColumn']\n  onViewSharingSettingsClicked?: (benefactorId: string) => void\n  initialLimit?: number\n  hideTopLevelControls?: boolean\n} & Omit<TopLevelControlsProps, 'entityId'> &\n  Pick<QueryWrapperPlotNavCustomPlotParams, 'onCustomPlotClick'> &\n  Pick<\n    QueryWrapperProps,\n    | 'isRowSelectionVisible'\n    | 'rowSelectionPrimaryKey'\n    | 'isRowSelectionUIFloating'\n    | 'fileIdColumnName'\n    | 'fileNameColumnName'\n    | 'fileVersionColumnName'\n  > &\n  Pick<\n    QueryVisualizationWrapperProps,\n    | 'defaultShowPlots'\n    | 'visibleColumnCount'\n    | 'columnAliases'\n    | 'rgbIndex'\n    | 'showLastUpdatedOn'\n    | 'noContentPlaceholderType'\n    | 'unitDescription'\n    | 'additionalFiltersSessionStorageKey'\n    | 'helpConfiguration'\n    | 'hideCopyToClipboard'\n    | 'hideSearchBarControl'\n    | 'hideVisualizationsControl'\n    | 'enabledExternalAnalysisPlatforms'\n  > &\n  Pick<QueryContextType, 'combineRangeFacetConfig'>\n\nexport type QueryWrapperPlotNavProps = QueryOrDeprecatedSearchParams &\n  PlotsContainerProps &\n  QueryWrapperPlotNavOwnProps\n\ntype QueryWrapperPlotNavContentsProps = Pick<\n  QueryWrapperPlotNavProps,\n  | 'tableConfiguration'\n  | 'name'\n  | 'cardConfiguration'\n  | 'facetsToPlot'\n  | 'availableFacets'\n  | 'initialExpandedFacetControls'\n  | 'hideDownload'\n  | 'hideQueryCount'\n  | 'hideSqlEditorControl'\n  | 'hideVisualizationsControl'\n  | 'searchConfiguration'\n  | 'enabledExternalAnalysisPlatforms'\n  | 'cavaticaConnectAccountURL'\n  | 'customControls'\n  | 'customPlots'\n  | 'fileIdColumnName'\n  | 'fileNameColumnName'\n  | 'fileVersionColumnName'\n  | 'initialLimit'\n  | 'initialPlotTypeByFacetColumnName'\n  | 'hideTopLevelControls'\n> & {\n  isFullTextSearchEnabled: boolean\n  remount: () => void\n}\n\nfunction QueryWrapperPlotNavContents(props: QueryWrapperPlotNavContentsProps) {\n  const {\n    tableConfiguration,\n    name,\n    cardConfiguration,\n    facetsToPlot,\n    availableFacets,\n    initialExpandedFacetControls,\n    hideDownload,\n    hideQueryCount,\n    hideSqlEditorControl,\n    hideVisualizationsControl,\n    searchConfiguration,\n    cavaticaConnectAccountURL,\n    customControls,\n    remount,\n    isFullTextSearchEnabled,\n    customPlots,\n    initialLimit,\n    initialPlotTypeByFacetColumnName,\n    hideTopLevelControls,\n  } = props\n  const queryContext = useQueryContext()\n  const [showExportMetadata, setShowExportMetadata] = useState(false)\n  const { hasFacetedSelectColumn: isFaceted, queryMetadataQueryOptions } =\n    queryContext\n  const { isLoading: isLoadingQueryMetadata } = useQuery(\n    queryMetadataQueryOptions,\n  )\n\n  const isRowSelectionVisible = useAtomValue(isRowSelectionVisibleAtom)\n\n  const currentQueryRequest = queryContext.currentQueryRequest\n\n  const hasFacetsOrFilters =\n    (currentQueryRequest?.query.selectedFacets !== undefined &&\n      currentQueryRequest.query.selectedFacets.length > 0) ||\n    (currentQueryRequest?.query.additionalFilters !== undefined &&\n      currentQueryRequest?.query.additionalFilters.length > 0)\n\n  const addToDownloadListRequest =\n    useGetAddToDownloadListRequestForCurrentQuery()\n\n  return (\n    <QueryVisualizationContextConsumer>\n      {queryVisualizationContext => {\n        if (queryVisualizationContext === undefined) {\n          throw new Error(\n            'No queryVisualizationContext found when using QueryVisualizationContextConsumer',\n          )\n        }\n\n        return (\n          <Box\n            className={`QueryWrapperPlotNav ${\n              queryVisualizationContext.showFacetFilter\n                ? QUERY_FILTERS_EXPANDED_CSS\n                : QUERY_FILTERS_COLLAPSED_CSS\n            } ${isRowSelectionVisible ? HAS_SELECTED_ROWS_CSS : ''} ${\n              hideTopLevelControls ? 'isHidingTopLevelControls' : ''\n            }`}\n            sx={{\n              '*': {\n                cursor: isLoadingQueryMetadata ? 'wait' : undefined,\n              },\n            }}\n          >\n            <QueryWrapperErrorBoundary>\n              {isFullTextSearchEnabled ? (\n                <FullTextSearch ftsConfig={searchConfiguration?.ftsConfig} />\n              ) : (\n                <SearchV2\n                  {...searchConfiguration}\n                  queryContext={queryContext}\n                  queryVisualizationContext={queryVisualizationContext}\n                />\n              )}\n              <SqlEditor />\n              {queryVisualizationContext.showDownloadConfirmation && (\n                <AddToDownloadListConfirmationAlert\n                  addToDownloadListRequest={addToDownloadListRequest}\n                  onClose={() =>\n                    queryVisualizationContext.setShowDownloadConfirmation(false)\n                  }\n                />\n              )}\n              {!hideTopLevelControls && (\n                <SynapseErrorBoundary>\n                  <TopLevelControls\n                    showColumnSelection={tableConfiguration !== undefined}\n                    name={name}\n                    hideDownload={hideDownload}\n                    hideQueryCount={hideQueryCount}\n                    hideFacetFilterControl={!isFaceted}\n                    hideVisualizationsControl={\n                      !isFaceted || hideVisualizationsControl\n                    }\n                    hideSqlEditorControl={hideSqlEditorControl}\n                    cavaticaConnectAccountURL={cavaticaConnectAccountURL}\n                    remount={remount}\n                    customControls={customControls}\n                  />\n                </SynapseErrorBoundary>\n              )}\n              {isFaceted && (\n                <>\n                  <FacetFilterControls\n                    availableFacets={availableFacets}\n                    initialExpandedFacetControls={initialExpandedFacetControls}\n                  />\n                </>\n              )}\n              <TotalQueryResults\n                frontText={''}\n                endText={hasFacetsOrFilters ? 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This eliminates a class of\n   * bugs where our 'derived' state (the current query), which should be reset, is out of sync with props.\n   *\n   * See https://legacy.reactjs.org/blog/2018/06/07/you-probably-dont-need-derived-state.html#recommendation-fully-uncontrolled-component-with-a-key\n   */\n  const queryWrapperKey = `${JSON.stringify(initQueryRequest)}-${componentKey}`\n\n  return (\n    <QueryWrapper\n      {...props}\n      initQueryRequest={initQueryRequest}\n      key={queryWrapperKey}\n      isInfinite={isInfinite}\n    >\n      <Suspense fallback={<QueryWrapperLoadingScreen />}>\n        <QueryVisualizationWrapper\n          unitDescription={unitDescription}\n          rgbIndex={props.rgbIndex}\n          columnAliases={props.columnAliases}\n          helpConfiguration={helpConfiguration}\n          visibleColumnCount={props.visibleColumnCount}\n          defaultShowPlots={props.defaultShowPlots}\n          hideCopyToClipboard={props.hideCopyToClipboard}\n          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package/dist/components/QueryWrapperPlotNav/QueryWrapperSynapsePlot.d.ts

@@ -7,7 +7,7 @@ type QueryWrapperSynapsePlotInternalProps = {
 };
 export type QueryWrapperSynapsePlotRowClickEvent = {
     row: Row;
-    queryContext: QueryContextType;
+    queryContext?: QueryContextType;
 };
 /**
  * This component wraps a SynapsePlot.  It passes in the current query context, and has a custom

package/dist/components/QueryWrapperPlotNav/QueryWrapperSynapsePlot.d.ts.map

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package/dist/components/QueryWrapperPlotNav/QueryWrapperSynapsePlot.js.map

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package/dist/components/Resources/Resources.Desktop.js

@@ -1,24 +1,24 @@
 import { jsxs as r, jsx as e } from "react/jsx-runtime";
 import { useState as l } from "react";
-import { MarkdownSynapse as m } from "../Markdown/MarkdownSynapse.js";
-function f({ data: s }) {
+import { Markdown as m } from "../Markdown/MarkdownSynapse.js";
+function f({ data: t }) {
   const [a, i] = l(0);
   return /* @__PURE__ */ r("div", { className: "control-container", children: [
     /* @__PURE__ */ r("div", { className: "button-container", children: [
-      s?.map((n, t) => /* @__PURE__ */ e(
+      t?.map((n, s) => /* @__PURE__ */ e(
         "button",
         {
-          className: a === t ? "isSelected" : "",
-          onClick: () => i(t),
+          className: a === s ? "isSelected" : "",
+          onClick: () => i(s),
           children: n.name
         },
         n.name
       )),
       /* @__PURE__ */ e("button", { className: "gap-fill" })
     ] }),
-    /* @__PURE__ */ e("div", { className: "content-container", children: s?.map((n, t) => {
+    /* @__PURE__ */ e("div", { className: "content-container", children: t?.map((n, s) => {
       const { ownerId: o, wikiId: c } = n;
-      return /* @__PURE__ */ e("span", { className: a === t ? "" : "hide", children: /* @__PURE__ */ e(m, { ownerId: o, wikiId: c }) }, o);
+      return /* @__PURE__ */ e("span", { className: a === s ? "" : "hide", children: /* @__PURE__ */ e(m, { ownerId: o, wikiId: c }) }, o);
     }) })
   ] });
 }

package/dist/components/Resources/Resources.Mobile.js

@@ -1,12 +1,12 @@
-import { jsx as e, jsxs as s, Fragment as a } from "react/jsx-runtime";
-import { MarkdownSynapse as i } from "../Markdown/MarkdownSynapse.js";
+import { jsx as o, jsxs as s, Fragment as a } from "react/jsx-runtime";
+import { Markdown as i } from "../Markdown/MarkdownSynapse.js";
 import m from "../home_page/ExpandableContent.js";
-function f({ data: r }) {
-  return /* @__PURE__ */ e("div", { className: "Resources_Mobile", children: r.map(({ name: o, ownerId: t, wikiId: n }) => /* @__PURE__ */ e(m, { title: /* @__PURE__ */ s(a, { children: [
+function f({ data: e }) {
+  return /* @__PURE__ */ o("div", { className: "Resources_Mobile", children: e.map(({ name: r, ownerId: t, wikiId: n }) => /* @__PURE__ */ o(m, { title: /* @__PURE__ */ s(a, { children: [
     " ",
-    o,
+    r,
     " "
-  ] }), content: /* @__PURE__ */ e(i, { ownerId: t, wikiId: n }) }, o)) });
+  ] }), content: /* @__PURE__ */ o(i, { ownerId: t, wikiId: n }) }, r)) });
 }
 export {
   f as default

package/dist/components/SubsectionRowRenderer/SubsectionRowRenderer.js

@@ -29,9 +29,9 @@ import "../../utils/context/FullContextProvider.js";
 import "../../utils/context/DocumentMetadataContext.js";
 import '../../style/components/_spinner.css';/* empty css                                   */
 import "react-router";
-import { MarkdownSynapse as C } from "../Markdown/MarkdownSynapse.js";
+import { Markdown as C } from "../Markdown/MarkdownSynapse.js";
 import { SkeletonTable as U } from "../Skeleton/SkeletonTable.js";
-const O = [
+const M = [
   m.BOOLEAN_LIST,
   m.DATE_LIST,
   m.ENTITYID_LIST,
@@ -104,7 +104,7 @@ function Te({
             if (!a)
               return /* @__PURE__ */ e(E, {});
             let l;
-            if (O.includes(r.columnType))
+            if (M.includes(r.columnType))
               l = JSON.parse(a).map((n, S) => /* @__PURE__ */ h(
                 "div",
                 {

package/dist/components/SustainabilityScorecard/SustainabilityScorecardSummary.js

@@ -2,12 +2,12 @@ import { jsx as e, jsxs as o } from "react/jsx-runtime";
 import y from "../../synapse-queries/entity/useGetQueryResultBundle.js";
 import { getFieldIndex as S } from "../../utils/functions/queryUtils.js";
 import { getMetricValues as w, SUSTAINABILITY_ICON_COLORS as x } from "./SustainabilityScorecardUtils.js";
-import { useTheme as I, Skeleton as k, Box as r, Stack as B, Typography as m, Card as b } from "@mui/material";
+import { useTheme as k, Skeleton as I, Box as r, Stack as B, Typography as m, Card as b } from "@mui/material";
 import C from "@mui/icons-material/CheckCircle";
 import R from "@mui/icons-material/Cancel";
 import T from "../SynapseTable/NoContentAvailable.js";
 import v from "./Dial.js";
-import { MarkdownSynapse as L } from "../Markdown/MarkdownSynapse.js";
+import { Markdown as L } from "../Markdown/MarkdownSynapse.js";
 const D = ({
   label: i,
   markdownText: a,
@@ -65,9 +65,9 @@ const D = ({
   metricsConfig: t,
   scoreDescriptorColumnName: n
 }) => {
-  const c = I(), { data: l, isLoading: h } = y(i);
+  const c = k(), { data: l, isLoading: h } = y(i);
   if (h)
-    return /* @__PURE__ */ e(k, { width: "100%", height: "90px" });
+    return /* @__PURE__ */ e(I, { width: "100%", height: "90px" });
   const s = l?.queryResult.queryResults;
   if (!s?.rows?.length)
     return /* @__PURE__ */ e(r, { sx: { paddingTop: "60px" }, children: /* @__PURE__ */ e(T, {}) });
@@ -104,23 +104,23 @@ const D = ({
         ]
       }
     ),
-    /* @__PURE__ */ e(b, { children: t.map((p, d) => /* @__PURE__ */ e(
+    /* @__PURE__ */ e(b, { children: t.map((d, p) => /* @__PURE__ */ e(
       r,
       {
         sx: {
-          borderBottom: d !== t.length - 1 ? `1px solid ${c.palette.grey[300]}` : void 0
+          borderBottom: p !== t.length - 1 ? `1px solid ${c.palette.grey[300]}` : void 0
         },
         children: /* @__PURE__ */ e(
           D,
           {
-            label: p.label,
-            markdownText: p.text ?? "",
-            index: d,
+            label: d.label,
+            markdownText: d.text ?? "",
+            index: p,
             metricValues: f
           }
         )
       },
-      p.key
+      d.key
     )) })
   ] });
 };

package/dist/components/SynapseChat/SynapseChatInteraction.js

@@ -4,7 +4,7 @@ import j from "./extractMessageFromTraceEvent.js";
 import { SmartToyTwoTone as B, KeyboardArrowDown as P, KeyboardArrowRight as q } from "@mui/icons-material";
 import { useTheme as F, ListItem as T, ListItemText as z, Box as d, Button as E, Collapse as D, Stack as G, Tooltip as K, Chip as O, Alert as $ } from "@mui/material";
 import { useRef as H, useState as _, useEffect as J, useMemo as x } from "react";
-import { MarkdownSynapse as C } from "../Markdown/MarkdownSynapse.js";
+import { Markdown as k } from "../Markdown/MarkdownSynapse.js";
 function N(n) {
   return "reasoningText" in n ? n.reasoningText : "";
 }
@@ -16,7 +16,7 @@ function ee({
   scrollIntoView: u = !1,
   onSendChat: f
 }) {
-  const h = F(), a = H(null), [p, k] = _(!1);
+  const h = F(), a = H(null), [p, C] = _(!1);
   J(() => {
     u && a.current && a.current.scrollIntoView({ behavior: "smooth" });
   }, [a, u]);
@@ -122,7 +122,7 @@ function ee({
                           startIcon: g ? /* @__PURE__ */ t(L, { size: 14 }) : p ? /* @__PURE__ */ t(P, { sx: { width: "14px" } }) : /* @__PURE__ */ t(q, { sx: { width: "14px" } }),
                           disabled: !v,
                           onClick: () => {
-                            k((e) => !e);
+                            C((e) => !e);
                           },
                           sx: {
                             height: "20px",
@@ -142,7 +142,7 @@ function ee({
                         }
                       ),
                       m && /* @__PURE__ */ t(D, { in: p, children: /* @__PURE__ */ t(
-                        C,
+                        k,
                         {
                           markdown: l.map(N).filter((e) => e.trim().length > 0).join("<br/><br/>")
                         }
@@ -150,7 +150,7 @@ function ee({
                     ]
                   }
                 ),
-                w && /* @__PURE__ */ t(C, { markdown: w }),
+                w && /* @__PURE__ */ t(k, { markdown: w }),
                 f && b.length > 0 && /* @__PURE__ */ t(G, { direction: "row", flexWrap: "wrap", gap: 1, mt: 1, children: b.map((e) => /* @__PURE__ */ t(K, { title: e, children: /* @__PURE__ */ t(
                   O,
                   {

package/dist/components/SynapseForm/WarningDialog.d.ts

@@ -9,6 +9,7 @@ export type WarningDialogProps<T = any> = {
     onConfirm: (...args: T[]) => unknown;
     onConfirmCallbackArgs?: Parameters<WarningDialogProps['onConfirm']>;
     confirmButtonColor?: ButtonProps['color'];
+    confirmButtonDisabled?: boolean;
     onCancel: () => void;
 };
 export declare function WarningDialog(props: WarningDialogProps): import("react/jsx-runtime").JSX.Element;

package/dist/components/SynapseForm/WarningDialog.d.ts.map

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package/dist/components/SynapseForm/WarningDialog.js

@@ -1,35 +1,37 @@
-import { jsx as e } from "react/jsx-runtime";
-import { ConfirmationDialog as s } from "../ConfirmationDialog/ConfirmationDialog.js";
-function u(o) {
+import { jsx as s } from "react/jsx-runtime";
+import { ConfirmationDialog as u } from "../ConfirmationDialog/ConfirmationDialog.js";
+function d(o) {
   const {
     title: n,
     content: r,
     confirmButtonText: t = "OK",
     className: i,
-    open: m,
-    onConfirm: a,
-    confirmButtonColor: c = "primary",
-    onCancel: f,
-    onConfirmCallbackArgs: l
+    open: a,
+    onConfirm: m,
+    confirmButtonColor: l = "primary",
+    confirmButtonDisabled: c,
+    onCancel: e,
+    onConfirmCallbackArgs: f
   } = o;
-  return /* @__PURE__ */ e(
-    s,
+  return /* @__PURE__ */ s(
+    u,
     {
-      open: m,
+      open: a,
       title: n,
       content: r,
       className: i,
       confirmButtonProps: {
         children: t,
-        color: c
+        color: l,
+        disabled: c
       },
-      onCancel: f,
-      onConfirm: () => a(...l ?? [])
+      onCancel: e,
+      onConfirm: () => m(...f ?? [])
     }
   );
 }
 export {
-  u as WarningDialog,
-  u as default
+  d as WarningDialog,
+  d as default
 };
 //# sourceMappingURL=WarningDialog.js.map

package/dist/components/SynapseForm/WarningDialog.js.map

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-{"version":3,"file":"WarningDialog.js","sources":["../../../src/components/SynapseForm/WarningDialog.tsx"],"sourcesContent":["import { ButtonProps } from '@mui/material'\nimport { ReactNode } from 'react'\nimport { ConfirmationDialog } from '../ConfirmationDialog/ConfirmationDialog'\n\nexport type WarningDialogProps<T = any> = {\n  title: string\n  content: string | ReactNode\n  confirmButtonText?: string\n  className?: string\n  open: boolean\n  onConfirm: (...args: T[]) => unknown\n  onConfirmCallbackArgs?: Parameters<WarningDialogProps['onConfirm']>\n  confirmButtonColor?: ButtonProps['color']\n  onCancel: () => void\n}\n\nexport function WarningDialog(props: WarningDialogProps) {\n  const {\n    title,\n    content,\n    confirmButtonText = 'OK',\n    className,\n    open,\n    onConfirm,\n    confirmButtonColor = 'primary',\n    onCancel,\n    onConfirmCallbackArgs,\n  } = props\n  return (\n    <ConfirmationDialog\n      open={open}\n      title={title}\n      content={content}\n      className={className}\n      confirmButtonProps={{\n        children: confirmButtonText,\n        color: confirmButtonColor,\n      }}\n      onCancel={onCancel}\n      onConfirm={() => onConfirm(...(onConfirmCallbackArgs ?? []))}\n    />\n  )\n}\n\nexport default WarningDialog\n"],"names":["WarningDialog","props","title","content","confirmButtonText","className","open","onConfirm","confirmButtonColor","onCancel","onConfirmCallbackArgs","jsx","ConfirmationDialog"],"mappings":";;AAgBO,SAASA,EAAcC,GAA2B;AACvD,QAAM;AAAA,IACJ,OAAAC;AAAA,IACA,SAAAC;AAAA,IACA,mBAAAC,IAAoB;AAAA,IACpB,WAAAC;AAAA,IACA,MAAAC;AAAA,IACA,WAAAC;AAAA,IACA,oBAAAC,IAAqB;AAAA,IACrB,UAAAC;AAAA,IACA,uBAAAC;AAAA,EAAA,IACET;AACJ,SACE,gBAAAU;AAAA,IAACC;AAAA,IAAA;AAAA,MACC,MAAAN;AAAA,MACA,OAAAJ;AAAA,MACA,SAAAC;AAAA,MACA,WAAAE;AAAA,MACA,oBAAoB;AAAA,QAClB,UAAUD;AAAA,QACV,OAAOI;AAAA,MAAA;AAAA,MAET,UAAAC;AAAA,MACA,WAAW,MAAMF,EAAU,GAAIG,KAAyB,CAAA,CAAG;AAAA,IAAA;AAAA,EAAA;AAGjE;"}
+{"version":3,"file":"WarningDialog.js","sources":["../../../src/components/SynapseForm/WarningDialog.tsx"],"sourcesContent":["import { ButtonProps } from '@mui/material'\nimport { ReactNode } from 'react'\nimport { ConfirmationDialog } from '../ConfirmationDialog/ConfirmationDialog'\n\nexport type WarningDialogProps<T = any> = {\n  title: string\n  content: string | ReactNode\n  confirmButtonText?: string\n  className?: string\n  open: boolean\n  onConfirm: (...args: T[]) => unknown\n  onConfirmCallbackArgs?: Parameters<WarningDialogProps['onConfirm']>\n  confirmButtonColor?: ButtonProps['color']\n  confirmButtonDisabled?: boolean\n  onCancel: () => void\n}\n\nexport function WarningDialog(props: WarningDialogProps) {\n  const {\n    title,\n    content,\n    confirmButtonText = 'OK',\n    className,\n    open,\n    onConfirm,\n    confirmButtonColor = 'primary',\n    confirmButtonDisabled,\n    onCancel,\n    onConfirmCallbackArgs,\n  } = props\n  return (\n    <ConfirmationDialog\n      open={open}\n      title={title}\n      content={content}\n      className={className}\n      confirmButtonProps={{\n        children: confirmButtonText,\n        color: confirmButtonColor,\n        disabled: confirmButtonDisabled,\n      }}\n      onCancel={onCancel}\n      onConfirm={() => onConfirm(...(onConfirmCallbackArgs ?? []))}\n    />\n  )\n}\n\nexport default WarningDialog\n"],"names":["WarningDialog","props","title","content","confirmButtonText","className","open","onConfirm","confirmButtonColor","confirmButtonDisabled","onCancel","onConfirmCallbackArgs","jsx","ConfirmationDialog"],"mappings":";;AAiBO,SAASA,EAAcC,GAA2B;AACvD,QAAM;AAAA,IACJ,OAAAC;AAAA,IACA,SAAAC;AAAA,IACA,mBAAAC,IAAoB;AAAA,IACpB,WAAAC;AAAA,IACA,MAAAC;AAAA,IACA,WAAAC;AAAA,IACA,oBAAAC,IAAqB;AAAA,IACrB,uBAAAC;AAAA,IACA,UAAAC;AAAA,IACA,uBAAAC;AAAA,EAAA,IACEV;AACJ,SACE,gBAAAW;AAAA,IAACC;AAAA,IAAA;AAAA,MACC,MAAAP;AAAA,MACA,OAAAJ;AAAA,MACA,SAAAC;AAAA,MACA,WAAAE;AAAA,MACA,oBAAoB;AAAA,QAClB,UAAUD;AAAA,QACV,OAAOI;AAAA,QACP,UAAUC;AAAA,MAAA;AAAA,MAEZ,UAAAC;AAAA,MACA,WAAW,MAAMH,EAAU,GAAII,KAAyB,CAAA,CAAG;AAAA,IAAA;AAAA,EAAA;AAGjE;"}

package/dist/components/SynapseHomepageV2/SynapseHomepageNavBar.js

@@ -19,7 +19,7 @@ import "@tanstack/query-core";
 import "lodash-es/isEmpty";
 import "lodash-es/isEqual";
 import "lodash-es/xorWith";
-import { useTheme as T, useMediaQuery as z, Box as m, Button as t, IconButton as k, styled as M, Divider as H, Menu as O, MenuItem as _ } from "@mui/material";
+import { useTheme as T, useMediaQuery as z, Box as m, Button as t, IconButton as k, Divider as H, styled as M, Menu as O, MenuItem as _ } from "@mui/material";
 import "@sage-bionetworks/synapse-client";
 import "../../utils/types/IsType.js";
 import "../../utils/hooks/useCookiePreferences.js";

package/dist/components/SynapseHomepageV2/SynapsePartners.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"SynapsePartners.d.ts","sourceRoot":"","sources":["../../../src/components/SynapseHomepageV2/SynapsePartners.tsx"],"names":[],"mappings":"AAcA,wBAAgB,eAAe,4CAiE9B"}

package/dist/components/SynapseHomepageV2/SynapsePartners.js

@@ -3,14 +3,14 @@ import { ReactComponent as o } from "../../assets/homepage/aacr.svg.js";
 import { ReactComponent as a } from "../../assets/homepage/cri.svg.js";
 import { ReactComponent as n } from "../../assets/homepage/ctf.svg.js";
 import { ReactComponent as f } from "../../assets/homepage/gff.svg.js";
-import { ReactComponent as m } from "../../assets/homepage/gray.svg.js";
-import { ReactComponent as l } from "../../assets/homepage/ml-commons.svg.js";
-import { ReactComponent as p } from "../../assets/homepage/nci.svg.js";
+import { ReactComponent as l } from "../../assets/homepage/gray.svg.js";
+import { ReactComponent as m } from "../../assets/homepage/ml-commons.svg.js";
+import { ReactComponent as p } from "../../assets/homepage/nih-nci.svg.js";
 import { ReactComponent as h } from "../../assets/homepage/nih-aging.svg.js";
 import { ReactComponent as i } from "../../assets/homepage/nih-heart.svg.js";
-import { ReactComponent as c } from "../../assets/homepage/nih-mental.svg.js";
-import { ReactComponent as w } from "../../assets/homepage/ntap.svg.js";
-import { ReactComponent as s } from "../../assets/homepage/sloan.svg.js";
+import { ReactComponent as s } from "../../assets/homepage/nih-nimh.svg.js";
+import { ReactComponent as c } from "../../assets/homepage/ntap.svg.js";
+import { ReactComponent as w } from "../../assets/homepage/sloan.svg.js";
 import { Box as e } from "@mui/material";
 function W() {
   return /* @__PURE__ */ r(e, { sx: { m: "auto", maxWidth: "1200px" }, children: /* @__PURE__ */ t(
@@ -21,10 +21,15 @@ function W() {
         flexWrap: "wrap",
         justifyContent: "center",
         alignItems: "center",
-        gap: "25px"
+        gap: "25px",
+        "& > a": {
+          display: "flex",
+          justifyContent: "center",
+          width: { xs: "100%", sm: "auto" }
+        }
       },
       children: [
-        /* @__PURE__ */ r("a", { href: "https://sloan.org/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(s, {}) }),
+        /* @__PURE__ */ r("a", { href: "https://sloan.org/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(w, {}) }),
         /* @__PURE__ */ r("a", { href: "https://www.aacr.org/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(o, {}) }),
         /* @__PURE__ */ r(
           "a",
@@ -45,13 +50,13 @@ function W() {
             children: /* @__PURE__ */ r(f, {})
           }
         ),
-        /* @__PURE__ */ r("a", { href: "http://grayfoundation.org/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(m, {}) }),
-        /* @__PURE__ */ r("a", { href: "https://mlcommons.org/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(l, {}) }),
+        /* @__PURE__ */ r("a", { href: "http://grayfoundation.org/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(l, {}) }),
+        /* @__PURE__ */ r("a", { href: "https://mlcommons.org/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(m, {}) }),
         /* @__PURE__ */ r("a", { href: "https://www.cancer.gov/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(p, {}) }),
         /* @__PURE__ */ r("a", { href: "https://www.nhlbi.nih.gov/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(i, {}) }),
         /* @__PURE__ */ r("a", { href: "https://www.nia.nih.gov/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(h, {}) }),
-        /* @__PURE__ */ r("a", { href: "https://www.nimh.nih.gov/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(c, {}) }),
-        /* @__PURE__ */ r("a", { href: "https://www.n-tap.org/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(w, {}) })
+        /* @__PURE__ */ r("a", { href: "https://www.nimh.nih.gov/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(s, {}) }),
+        /* @__PURE__ */ r("a", { href: "https://www.n-tap.org/", target: "_blank", rel: "noreferrer", children: /* @__PURE__ */ r(c, {}) })
       ]
     }
   ) });

package/dist/components/SynapseHomepageV2/SynapsePartners.js.map

@@ -1 +1 @@
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package/dist/components/SynapsePortalBanners/SynapsePortalBanners.d.ts.map

@@ -1 +1 @@
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