npm - synapse-react-client - Versions diffs - 4.0.1 → 4.0.2 - Mend

synapse-react-client 4.0.1 → 4.0.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (22) hide show

package/dist/SWC.index.js CHANGED Viewed

@@ -215,7 +215,7 @@ const X = {
   sendSearchResultsReturnedEvent: c,
   sendSearchResultReturnedEvent: d,
   sendSearchResultClickedEvent: l
-}, $ = "4.0.1";
+}, $ = "4.0.2";
 export {
   _ as Analytics,
   g as HttpClient,

package/dist/components/EntityDownloadButton/EntityDownloadButton.d.ts CHANGED Viewed

@@ -1,4 +1,5 @@
 import { EntityType } from '@sage-bionetworks/synapse-client';
+import { RefObject } from 'react';
 export declare const PYTHON_CLIENT_IMPORT_AND_LOGIN = "import synapseclient\nsyn = synapseclient.Synapse()\nsyn.login(authToken=\"YOUR_TOKEN_HERE\")";
 export declare const R_CLIENT_IMPORT_AND_LOGIN = "library(synapser)\nsynLogin(authToken=\"YOUR_TOKEN_HERE\")";
 declare enum DownloadAction {
@@ -13,6 +14,8 @@ export declare function EntityDownloadButton(props: {
     entityId: string;
     name: string;
     entityType: EntityType;
+    downloadConfirmationContainer?: RefObject<HTMLElement | null>;
+    disabled?: boolean;
 }): import("react/jsx-runtime").JSX.Element;
 export {};
 //# sourceMappingURL=EntityDownloadButton.d.ts.map

package/dist/components/EntityDownloadButton/EntityDownloadButton.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"EntityDownloadButton.d.ts","sourceRoot":"","sources":["../../../src/components/EntityDownloadButton/EntityDownloadButton.tsx"],"names":[],"mappings":"AAiBA,OAAO,EAAE,UAAU,EAAE,MAAM,kCAAkC,CAAA;AAK7D,OAAO,EAAE,SAAS,EAAY,MAAM,OAAO,CAAA;AAkB3C,eAAO,MAAM,8BAA8B,kGAEJ,CAAA;AAGvC,eAAO,MAAM,yBAAyB,+DACA,CAAA;AA2DtC,aAAK,cAAc;IACjB,YAAY,IAAA;IACZ,SAAS,IAAA;IACT,kBAAkB,IAAA;IAClB,wBAAwB,IAAA;IACxB,WAAW,IAAA;CACZ;AA6FD,wBAAgB,+BAA+B,CAC7C,IAAI,EAAE,UAAU,GACf,cAAc,EAAE,EAAE,CAkCpB;AA2ED,wBAAgB,oBAAoB,CAAC,KAAK,EAAE;IAC1C,QAAQ,EAAE,MAAM,CAAA;IAChB,IAAI,EAAE,MAAM,CAAA;IACZ,UAAU,EAAE,UAAU,CAAA;IACtB,6BAA6B,CAAC,EAAE,SAAS,CAAC,WAAW,GAAG,IAAI,CAAC,CAAA;IAC7D,QAAQ,CAAC,EAAE,OAAO,CAAA;CACnB,2CAgLA"}

package/dist/components/EntityDownloadButton/EntityDownloadButton.js CHANGED Viewed

@@ -1,17 +1,17 @@
-import { jsxs as V, Fragment as _, jsx as w } from "react/jsx-runtime";
+import { jsx as u, jsxs as j, Fragment as H } from "react/jsx-runtime";
 import "../../synapse-client/SynapseClient.js";
 import "@sage-bionetworks/synapse-client/generated/models/ErrorResponseCode";
 import "@sage-bionetworks/synapse-client/generated/models/TwoFactorAuthErrorResponse";
 import "@sage-bionetworks/synapse-client/util/SynapseClientError";
-import { FileHandleAssociateType as j } from "@sage-bionetworks/synapse-types";
-import { isContainerType as F, isEntityView as H, hasFilesInView as G, isDataset as U, isVersionableEntity as B, entityTypeToFriendlyName as Q } from "../../utils/functions/EntityTypeUtils.js";
+import { FileHandleAssociateType as G } from "@sage-bionetworks/synapse-types";
+import { isContainerType as U, isEntityView as B, hasFilesInView as Q, isDataset as Y, isVersionableEntity as z, entityTypeToFriendlyName as K } from "../../utils/functions/EntityTypeUtils.js";
 import "../../utils/SynapseConstants.js";
 import "lodash-es";
 import "@sage-bionetworks/synapse-client/util/synapseClientFetch";
 import "@tanstack/react-query";
 import "../../utils/PermissionLevelToAccessType.js";
-import { useState as E } from "react";
-import { useSynapseContext as Y } from "../../utils/context/SynapseContext.js";
+import { useState as w } from "react";
+import { useSynapseContext as W } from "../../utils/context/SynapseContext.js";
 import "use-deep-compare-effect";
 import "@mui/material";
 import "../../utils/hooks/useCookiePreferences.js";
@@ -27,22 +27,24 @@ import "lodash-es/isEqual";
 import "lodash-es/xorWith";
 import "react-router";
 import { EntityType as t } from "@sage-bionetworks/synapse-client";
-import { isFileEntity as z } from "../../utils/types/IsType.js";
-import { useAddFileToDownloadList as K, useAddToDownloadList as W, useGetAddToDownloadListStats as J } from "../../synapse-queries/download/useDownloadList.js";
-import { useGetEntity as h, useGetVersions as X } from "../../synapse-queries/entity/useEntity.js";
-import { useDirectDownloadHandler as Z } from "../../utils/hooks/useDirectDownloadHandler.js";
-import { DownloadOutlined as ee } from "@mui/icons-material";
-import { displayFilesWereAddedToDownloadListSuccess as D } from "../download_list/DownloadConfirmationUtils.js";
-import { DropdownMenu as te } from "../menu/DropdownMenu.js";
-import { ModalDownload as oe } from "../ModalDownload/ModalDownload.js";
-import { ProgrammaticInstructionsModal as se } from "../ProgrammaticInstructionsModal/ProgrammaticInstructionsModal.js";
-import { displayToast as f } from "../ToastMessage/ToastMessage.js";
-const C = `import synapseclient
+import { isFileEntity as J } from "../../utils/types/IsType.js";
+import { useAddFileToDownloadList as X, useGetAddToDownloadListStats as Z } from "../../synapse-queries/download/useDownloadList.js";
+import { useGetEntity as F, useGetVersions as ee } from "../../synapse-queries/entity/useEntity.js";
+import { useDirectDownloadHandler as te } from "../../utils/hooks/useDirectDownloadHandler.js";
+import { DownloadOutlined as oe } from "@mui/icons-material";
+import { createPortal as ne } from "react-dom";
+import { displayFilesWereAddedToDownloadListSuccess as ie } from "../download_list/DownloadConfirmationUtils.js";
+import { EntityDownloadConfirmation as ae } from "../EntityDownloadConfirmation/EntityDownloadConfirmation.js";
+import { DropdownMenu as re } from "../menu/DropdownMenu.js";
+import { ModalDownload as se } from "../ModalDownload/ModalDownload.js";
+import { ProgrammaticInstructionsModal as de } from "../ProgrammaticInstructionsModal/ProgrammaticInstructionsModal.js";
+import { displayToast as E } from "../ToastMessage/ToastMessage.js";
+const h = `import synapseclient
 syn = synapseclient.Synapse()
 syn.login(authToken="YOUR_TOKEN_HERE")`, b = `library(synapser)
 synLogin(authToken="YOUR_TOKEN_HERE")`;
-function re(e, o, s) {
-  const r = e === t.dataset && s ? `${o}.${s}` : o;
+function le(e, o, n) {
+  const i = e === t.dataset && n ? `${o}.${n}` : o;
   switch (e) {
     case t.file:
     case t.folder:
@@ -54,7 +56,7 @@ function re(e, o, s) {
 # Download file
 synGet('${o}')`,
-        pythonCode: `${C}
+        pythonCode: `${h}
 # Download file
 syn.get('${o}')`
@@ -76,61 +78,48 @@ docker pull docker.synapse.org/${o}/myrepo`,
     case t.virtualtable:
     case t.recordset:
       return {
-        cliCode: `synapse get -q "SELECT * FROM ${r}"`,
+        cliCode: `synapse get -q "SELECT * FROM ${i}"`,
         rCode: `${b}
-query <- synTableQuery("SELECT * FROM ${r}")
+query <- synTableQuery("SELECT * FROM ${i}")
 read.table(query$filepath, sep=",")`,
-        pythonCode: `${C}
+        pythonCode: `${h}
-query = syn.tableQuery("SELECT * FROM ${r}")
+query = syn.tableQuery("SELECT * FROM ${i}")
 query.asDataFrame()`
       };
     default:
       throw new Error(`Unhandled EntityType: ${e}`);
   }
 }
-function ne(e, o, s, r, d, l, c, n, m, p, u, y) {
-  switch (r) {
+function ce(e, o, n, i, s, d, l, r, y, c, p, f) {
+  switch (i) {
     case 0:
       return {
         text: "Download File",
         onClick: () => {
-          u && u();
+          p && p();
         },
-        tooltipText: y ? "Download this file directly" : "Sign in to download this file",
-        disabled: !y
+        tooltipText: f ? "Download this file directly" : "Sign in to download this file",
+        disabled: !f
       };
     case 1:
       return {
         text: "Add to Download Cart",
-        disabled: p,
-        tooltipText: ae(s, !!p),
+        disabled: c,
+        tooltipText: me(n, !!c),
         onClick: () => {
-          s === t.file || s === t.recordset ? c({
+          n === t.file || n === t.recordset ? l({
             entityId: e,
-            entityVersionNumber: m
-          }) : s === t.dataset ? n({
-            parentId: e,
-            useVersionNumber: !0,
-            concreteType: "org.sagebionetworks.repo.model.download.AddToDownloadListRequest"
-          }) : s === t.entityview ? n({
-            concreteType: "org.sagebionetworks.repo.model.download.AddToDownloadListRequest",
-            query: {
-              sql: `SELECT * FROM ${e}`
-            }
-          }) : n({
-            parentId: e,
-            concreteType: "org.sagebionetworks.repo.model.download.AddToDownloadListRequest",
-            recursive: F(s)
-          });
+            entityVersionNumber: y
+          }) : r(!0);
         }
       };
     case 2:
       return {
         text: "Programmatic Access",
         onClick: () => {
-          d(!0);
+          s(!0);
         },
         tooltipText: "View programmatic access options"
       };
@@ -138,7 +127,7 @@ function ne(e, o, s, r, d, l, c, n, m, p, u, y) {
       return {
         text: "Programmatic Access (Docker)",
         onClick: () => {
-          d(!0);
+          s(!0);
         },
         tooltipText: "View programmatic options to pull Docker image"
       };
@@ -146,14 +135,14 @@ function ne(e, o, s, r, d, l, c, n, m, p, u, y) {
       return {
         text: "Export Table",
         onClick: () => {
-          l(!0);
+          d(!0);
         },
         tooltipText: "Export table data"
       };
   }
 }
-const ae = (e, o) => o ? `This ${Q(e)} has no accessible files` : "Add file(s) to your download cart";
-function ie(e) {
+const me = (e, o) => o ? `This ${K(e)} has no accessible files` : "Add file(s) to your download cart";
+function ue(e) {
   switch (e) {
     case t.file:
     case t.recordset:
@@ -209,57 +198,50 @@ function ie(e) {
       throw new Error(`Unhandled EntityType: ${e}`);
   }
 }
-function de(e, o) {
-  const { data: s, isLoading: r } = h(e), d = o === t.dataset, { data: l, isLoading: c } = X(
+function ye(e, o) {
+  const { data: n, isLoading: i } = F(e), s = o === t.dataset, { data: d, isLoading: l } = ee(
     e,
     0,
     1,
     {
-      enabled: d
+      enabled: s
     }
   );
-  let n;
-  return d ? l?.results && l.results.length > 0 ? n = l.results[0].versionNumber : n = void 0 : n = s && B(s) ? s.versionNumber : void 0, { latestVersionNumber: n, isLoading: r || c };
-}
-function le(e, o, s) {
   let r;
-  return s === t.dataset ? r = o ? `SELECT * FROM ${e}.${o}` : `SELECT * FROM ${e}` : r = `SELECT * FROM ${e}`, {
+  return s ? d?.results && d.results.length > 0 ? r = d.results[0].versionNumber : r = void 0 : r = n && z(n) ? n.versionNumber : void 0, { latestVersionNumber: r, isLoading: i || l };
+}
+function pe(e, o, n) {
+  let i;
+  return n === t.dataset ? i = o ? `SELECT * FROM ${e}.${o}` : `SELECT * FROM ${e}` : i = `SELECT * FROM ${e}`, {
     concreteType: "org.sagebionetworks.repo.model.table.QueryBundleRequest",
     entityId: `${e}`,
     query: {
-      sql: r
+      sql: i
     },
     partMask: 0
   };
 }
-function We(e) {
-  const { latestVersionNumber: o } = de(
+function nt(e) {
+  const { latestVersionNumber: o } = ye(
     e.entityId,
     e.entityType
-  ), s = le(
+  ), n = pe(
     e.entityId,
     o,
     e.entityType
-  ), { downloadCartPageUrl: r, isAuthenticated: d } = Y(), { mutate: l } = K({
-    onSuccess: (i) => {
-      i.numberOfFilesAdded > 0 ? D(r) : f("0 Files added to your Download Cart", "info");
-    },
-    onError: (i) => {
-      f(i.reason, "danger");
-    }
-  }), { mutate: c } = W({
-    onSuccess: (i) => {
-      i.numberOfFilesAdded != null && i.numberOfFilesAdded > 0 ? D(r) : f("0 Files added to your Download Cart", "info");
+  ), { downloadCartPageUrl: i, isAuthenticated: s } = W(), { mutate: d } = X({
+    onSuccess: (m) => {
+      m.numberOfFilesAdded > 0 ? ie(i) : E("0 Files added to your Download Cart", "info");
     },
-    onError: (i) => {
-      f(i.reason, "danger");
+    onError: (m) => {
+      E(m.reason, "danger");
     }
-  }), [n, m] = E(!1), p = () => {
-    m(!1);
-  }, u = F(e.entityType), {
-    data: y,
-    isLoading: L
-  } = J(
+  }), [l, r] = w(!1), [y, c] = w(!1), [p, f] = w(!1), L = () => {
+    r(!1);
+  }, T = U(e.entityType), {
+    data: k,
+    isLoading: O
+  } = Z(
     {
       concreteType: "org.sagebionetworks.repo.model.download.AddToDownloadListStatsRequest",
       request: {
@@ -269,76 +251,88 @@ function We(e) {
       }
     },
     {
-      enabled: u
+      enabled: T
     }
-  ), k = u && (L || y?.fileCount === 0), { data: a } = h(e.entityId), { downloadFile: A } = Z(), g = a && z(a) ? a.dataFileHandleId : void 0, O = g ? () => {
+  ), $ = T && (O || k?.fileCount === 0), { data: a } = F(e.entityId), { downloadFile: A } = te(), C = a && J(a) ? a.dataFileHandleId : void 0, R = C ? () => {
     A({
-      fileHandleId: g,
+      fileHandleId: C,
       associatedObjectId: e.entityId,
-      associatedObjectType: j.FileEntity
+      associatedObjectType: G.FileEntity
     });
-  } : void 0, R = a && H(a) && !G(a), $ = a && U(a) && (!a.items || a.items.length === 0), S = k || R || $, [N, T] = E(!1), v = () => {
-    T(!1);
-  }, q = ie(e.entityType).map(
-    (i) => i.map(
-      (I) => ne(
+  } : void 0, S = a && B(a) && !Q(a), N = a && Y(a) && (!a.items || a.items.length === 0), x = $ || S || N, [v, D] = w(!1), I = () => {
+    D(!1);
+  }, M = ue(e.entityType).map(
+    (m) => m.map(
+      (_) => ce(
         e.entityId,
         e.name,
         e.entityType,
-        I,
-        m,
-        T,
-        l,
+        _,
+        r,
+        D,
+        d,
         c,
         o,
-        S,
-        O,
-        d
+        x,
+        R,
+        s
       )
     )
-  ), { cliCode: x, rCode: M, pythonCode: P } = re(
+  ), { cliCode: P, rCode: q, pythonCode: V } = le(
     e.entityType,
     e.entityId,
     o
-  );
-  return /* @__PURE__ */ V(_, { children: [
-    /* @__PURE__ */ w(
-      te,
+  ), g = y ? /* @__PURE__ */ u(
+    ae,
+    {
+      entityId: e.entityId,
+      handleClose: () => c(!1),
+      onIsLoadingChange: f
+    }
+  ) : null;
+  return /* @__PURE__ */ j(H, { children: [
+    /* @__PURE__ */ u(
+      re,
       {
-        items: q,
+        items: M,
         dropdownButtonText: "Download",
         buttonTooltip: "Download options for this entity",
         buttonProps: {
           variant: "outlined",
-          startIcon: /* @__PURE__ */ w(ee, {})
+          startIcon: /* @__PURE__ */ u(oe, {}),
+          disabled: e.disabled || p
         }
       }
     ),
-    /* @__PURE__ */ w(
-      se,
+    g && (e.downloadConfirmationContainer?.current ? ne(
+      g,
+      e.downloadConfirmationContainer.current
+    ) : g),
+    /* @__PURE__ */ u(
+      de,
       {
-        show: n,
+        show: l,
         title: `Programmatic Access: ${e.name}`,
-        onClose: p,
-        pythonCode: P,
-        rCode: M,
-        cliCode: x,
+        onClose: L,
+        pythonCode: V,
+        rCode: q,
+        cliCode: P,
         helpUrl: "https://help.synapse.org/docs/Synapse-Docker-Registry.2011037752.html#SynapseDockerRegistry-UsingDockerImagesStoredintheSynapseDockerRegistry"
       }
     ),
-    N && /* @__PURE__ */ w(
-      oe,
+    v && /* @__PURE__ */ u(
+      se,
       {
-        queryBundleRequest: s,
-        onClose: v
+        queryBundleRequest: n,
+        onClose: I
       }
     )
   ] });
 }
 export {
-  We as EntityDownloadButton,
-  C as PYTHON_CLIENT_IMPORT_AND_LOGIN,
+  nt as EntityDownloadButton,
+  h as PYTHON_CLIENT_IMPORT_AND_LOGIN,
   b as R_CLIENT_IMPORT_AND_LOGIN,
-  ie as getDownloadActionsForEntityType
+  ue as getDownloadActionsForEntityType
 };
 //# sourceMappingURL=EntityDownloadButton.js.map

package/dist/components/EntityDownloadButton/EntityDownloadButton.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"EntityDownloadButton.js","sources":["../../../src/components/EntityDownloadButton/EntityDownloadButton.tsx"],"sourcesContent":["import { useGetEntity, useGetVersions } from '@/synapse-queries'\nimport {\n useAddFileToDownloadList,\n useAddToDownloadList,\n useGetAddToDownloadListStats,\n} from '@/synapse-queries/index'\nimport { useSynapseContext } from '@/utils'\nimport {\n entityTypeToFriendlyName,\n hasFilesInView,\n isContainerType,\n isDataset,\n isEntityView,\n isVersionableEntity,\n} from '@/utils/functions/EntityTypeUtils'\nimport { useDirectDownloadHandler } from '@/utils/hooks/useDirectDownloadHandler'\nimport { isFileEntity } from '@/utils/types/IsType'\nimport { DownloadOutlined as DownloadIcon } from '@mui/icons-material'\nimport {\n AddToDownloadListRequest,\n EntityType,\n} from '@sage-bionetworks/synapse-client'\nimport {\n FileHandleAssociateType,\n QueryBundleRequest,\n} from '@sage-bionetworks/synapse-types'\nimport { useState } from 'react'\nimport { displayFilesWereAddedToDownloadListSuccess } from '../download_list/DownloadConfirmationUtils'\nimport { DropdownMenu, DropdownMenuItem } from '../menu/DropdownMenu'\nimport { ModalDownload } from '../ModalDownload/ModalDownload'\nimport { ProgrammaticInstructionsModal } from '../ProgrammaticInstructionsModal/ProgrammaticInstructionsModal'\nimport { displayToast } from '../ToastMessage/index'\n\n// WIP\n// Per Nick Grosenbacher: For this to be reusable, I think we would also need to accept versionNumber as a prop. Where we would have the following behavior:\n// - If the version number is present, use it\n// - If the version number is null, do not use it,\n// - If the version number is undefined, then we would try to do the 'smart' thing-- get the latest version for datasets, otherwise don't use it.\n\n// Have to keep these consts outside of getProgrammaticAccessCode because\n// they are being called in ProgrammaticTableDownload.tsx\n// Python client import and login instructions\nexport const PYTHON_CLIENT_IMPORT_AND_LOGIN = `import synapseclient\nsyn = synapseclient.Synapse()\nsyn.login(authToken=\"YOUR_TOKEN_HERE\")`\n\n// R client import and login instructions\nexport const R_CLIENT_IMPORT_AND_LOGIN = `library(synapser)\nsynLogin(authToken=\"YOUR_TOKEN_HERE\")`\n\ntype ProgrammaticAccessCode = {\n cliCode: string \| undefined\n rCode: string \| undefined\n pythonCode: string \| undefined\n}\n\n// Generate programmatic access code snippet content based on entity type\nfunction getProgrammaticAccessCode(\n type: EntityType,\n entityId: string,\n version: number \| undefined,\n): ProgrammaticAccessCode {\n const id =\n type === EntityType.dataset && version ? `${entityId}.${version}` : entityId\n switch (type) {\n case EntityType.file:\n case EntityType.folder:\n case EntityType.project:\n case EntityType.link:\n return {\n cliCode: `synapse get -r ${entityId}`,\n rCode: `${R_CLIENT_IMPORT_AND_LOGIN} \\n\n# Download file\nsynGet('${entityId}')`,\n pythonCode: `${PYTHON_CLIENT_IMPORT_AND_LOGIN} \\n\n# Download file\nsyn.get('${entityId}')`,\n }\n case EntityType.dockerrepo:\n return {\n cliCode: `docker login -u <synapse username> -p <synapse password> docker.synapse.org \\n\ndocker pull docker.synapse.org/${entityId}/myrepo`,\n rCode: undefined,\n pythonCode: undefined,\n }\n case EntityType.dataset:\n case EntityType.entityview:\n case EntityType.datasetcollection:\n case EntityType.table:\n case EntityType.materializedview:\n case EntityType.submissionview:\n case EntityType.virtualtable:\n case EntityType.recordset:\n return {\n cliCode: `synapse get -q \"SELECT * FROM ${id}\"`,\n rCode: `${R_CLIENT_IMPORT_AND_LOGIN} \\n\nquery <- synTableQuery(\"SELECT * FROM ${id}\")\nread.table(query$filepath, sep=\",\")`,\n pythonCode: `${PYTHON_CLIENT_IMPORT_AND_LOGIN} \\n\nquery = syn.tableQuery(\"SELECT * FROM ${id}\")\nquery.asDataFrame()`,\n }\n default:\n throw new Error(`Unhandled EntityType: ${type}`)\n }\n}\n\nenum DownloadAction {\n downloadFile,\n addToCart,\n programmaticAccess,\n programmaticAccessDocker,\n exportTable,\n}\n\n// Function that creates menu items for download actions\nfunction getMenuItemForAction(\n entityId: string,\n entityName: string,\n entityType: EntityType,\n downloadAction: DownloadAction,\n setShowProgrammaticAccess: (show: boolean) => void,\n setShowExportMetadata: (show: boolean) => void,\n addFileToDownloadList: (params: {\n entityId: string\n entityVersionNumber: number \| undefined\n }) => void,\n addQueryToDownloadList: (request: AddToDownloadListRequest) => void,\n versionNumber?: number,\n addToCartDisabled?: boolean,\n onDownloadFile?: () => void,\n isAuthenticated?: boolean,\n): DropdownMenuItem {\n switch (downloadAction) {\n case DownloadAction.downloadFile:\n return {\n text: 'Download File',\n onClick: () => {\n if (onDownloadFile) onDownloadFile()\n },\n tooltipText: isAuthenticated\n ? 'Download this file directly'\n : 'Sign in to download this file',\n disabled: !isAuthenticated,\n }\n case DownloadAction.addToCart:\n return {\n text: 'Add to Download Cart',\n disabled: addToCartDisabled,\n tooltipText: getAddToCartTooltip(entityType, !!addToCartDisabled),\n onClick: () => {\n if (\n entityType === EntityType.file \|\|\n entityType === EntityType.recordset\n ) {\n addFileToDownloadList({\n entityId,\n entityVersionNumber: versionNumber,\n })\n }\n // dataset\n else if (entityType === EntityType.dataset) {\n addQueryToDownloadList({\n parentId: entityId,\n useVersionNumber: true,\n concreteType:\n 'org.sagebionetworks.repo.model.download.AddToDownloadListRequest',\n })\n }\n // entity view\n else if (entityType === EntityType.entityview) {\n addQueryToDownloadList({\n concreteType:\n 'org.sagebionetworks.repo.model.download.AddToDownloadListRequest',\n query: {\n sql: `SELECT * FROM ${entityId}`,\n },\n })\n } else {\n addQueryToDownloadList({\n parentId: entityId,\n concreteType:\n 'org.sagebionetworks.repo.model.download.AddToDownloadListRequest',\n recursive: isContainerType(entityType),\n })\n }\n },\n }\n case DownloadAction.programmaticAccess:\n return {\n text: 'Programmatic Access',\n onClick: () => {\n setShowProgrammaticAccess(true)\n },\n tooltipText: 'View programmatic access options',\n }\n case DownloadAction.programmaticAccessDocker:\n return {\n text: 'Programmatic Access (Docker)',\n onClick: () => {\n setShowProgrammaticAccess(true)\n },\n tooltipText: 'View programmatic options to pull Docker image',\n }\n case DownloadAction.exportTable:\n return {\n text: 'Export Table',\n onClick: () => {\n setShowExportMetadata(true)\n },\n tooltipText: 'Export table data',\n }\n }\n}\n\n/*\n Determines the tooltip message based on the entity type and its \"add to cart\" status.\n /\nconst getAddToCartTooltip = (\n entityType: EntityType,\n isDisabled: boolean,\n): string => {\n if (!isDisabled) {\n return 'Add file(s) to your download cart'\n }\n const entityFriendlyName = entityTypeToFriendlyName(entityType)\n return `This ${entityFriendlyName} has no accessible files`\n}\n\n// Function that returns DropdownMenuItem\nexport function getDownloadActionsForEntityType(\n type: EntityType,\n): DownloadAction[][] {\n switch (type) {\n case EntityType.file:\n case EntityType.recordset:\n return [\n [DownloadAction.downloadFile],\n [DownloadAction.addToCart, DownloadAction.programmaticAccess],\n ]\n case EntityType.project:\n case EntityType.folder:\n return [[DownloadAction.addToCart, DownloadAction.programmaticAccess]]\n case EntityType.dockerrepo:\n return [[DownloadAction.programmaticAccessDocker]]\n case EntityType.entityview:\n case EntityType.dataset:\n return [\n [\n DownloadAction.exportTable,\n DownloadAction.programmaticAccess,\n DownloadAction.addToCart,\n ],\n ]\n case EntityType.datasetcollection:\n case EntityType.table:\n case EntityType.materializedview:\n case EntityType.submissionview:\n case EntityType.virtualtable:\n return [[DownloadAction.exportTable, DownloadAction.programmaticAccess]]\n case EntityType.link:\n return [[DownloadAction.programmaticAccess]]\n default:\n // this will fail if a new EntityType is added and not handled\n throw new Error(`Unhandled EntityType: ${type}`)\n }\n}\n\n// get the appropriate version number for download based on entity type\n// for datasets: returns the most recent released version if any exist, undefined otherwise\n// for other entities: returns the current version number\nfunction useGetLatestVersionNumber(entityId: string, entityType: EntityType) {\n // get entity data\n const { data: entityData, isLoading: entityDataLoading } =\n useGetEntity(entityId) // No version = latest\n\n // for datasets, check if any versions exist and use the most recent one\n const mustGetVersion = entityType === EntityType.dataset\n const { data: versionsData, isLoading: versionsLoading } = useGetVersions(\n entityId,\n 0,\n 1,\n {\n enabled: mustGetVersion,\n },\n )\n\n let latestVersionNumber: number \| undefined\n\n if (mustGetVersion) {\n // for datasets, check if any versions exist\n if (versionsData?.results && versionsData.results.length > 0) {\n // Use the most recent released version (first in the list, since versions are returned in descending order)\n latestVersionNumber = versionsData.results[0].versionNumber\n } else {\n // no versions exist, use undefined (will use current/draft version)\n latestVersionNumber = undefined\n }\n } else {\n // for non-datasets, use the entity's version number\n latestVersionNumber =\n entityData && isVersionableEntity(entityData)\n ? entityData.versionNumber\n : undefined\n }\n\n const isLoading = entityDataLoading \|\| versionsLoading\n\n return { latestVersionNumber, isLoading }\n}\n\n// create default queryBundleRequest with appropriate SQL\nfunction getDefaultQueryBundleRequestForEntity(\n entityId: string,\n versionNumber: number \| undefined,\n entityType: EntityType,\n): QueryBundleRequest {\n let sql: string\n\n if (entityType === EntityType.dataset) {\n // for datasets:\n // - if a version number exists (released version), use it: syn123.5\n // - if no version number (no released versions), use current/draft: syn123\n sql = versionNumber\n ? `SELECT FROM ${entityId}.${versionNumber}`\n : `SELECT * FROM ${entityId}`\n } else {\n // For non-datasets, always use entity ID without version\n sql = `SELECT * FROM ${entityId}`\n }\n\n return {\n concreteType: 'org.sagebionetworks.repo.model.table.QueryBundleRequest',\n entityId: `${entityId}`,\n query: {\n sql: sql,\n },\n partMask: 0,\n }\n}\n\nexport function EntityDownloadButton(props: {\n entityId: string\n name: string\n entityType: EntityType\n}) {\n // get the appropriate version number for the entity\n const { latestVersionNumber } = useGetLatestVersionNumber(\n props.entityId,\n props.entityType,\n )\n // create queryBundleRequest with appropriate SQL based on entity type and version\n const defaultQueryBundleRequest = getDefaultQueryBundleRequestForEntity(\n props.entityId,\n latestVersionNumber,\n props.entityType,\n )\n\n // Get context and download functionality\n const { downloadCartPageUrl, isAuthenticated } = useSynapseContext()\n const { mutate: addFileToDownloadList } = useAddFileToDownloadList({\n onSuccess: data => {\n if (data.numberOfFilesAdded > 0) {\n displayFilesWereAddedToDownloadListSuccess(downloadCartPageUrl)\n } else {\n displayToast('0 Files added to your Download Cart', 'info')\n }\n },\n onError: error => {\n displayToast(error.reason, 'danger')\n },\n })\n\n const { mutate: addQueryToDownloadList } = useAddToDownloadList({\n onSuccess: data => {\n if (data.numberOfFilesAdded != null && data.numberOfFilesAdded > 0) {\n displayFilesWereAddedToDownloadListSuccess(downloadCartPageUrl)\n } else {\n displayToast('0 Files added to your Download Cart', 'info')\n }\n },\n onError: error => {\n displayToast(error.reason, 'danger')\n },\n })\n\n // state to manage programmatic access modal visibility\n const [showProgrammaticAccess, setShowProgrammaticAccess] =\n useState<boolean>(false)\n\n const handleCloseProgrammaticAccess = () => {\n setShowProgrammaticAccess(false)\n }\n\n const isFolderOrProject = isContainerType(props.entityType)\n\n const {\n data: folderOrProjectStats,\n isLoading: isLoadingFolderOrProjectStats,\n } = useGetAddToDownloadListStats(\n {\n concreteType:\n 'org.sagebionetworks.repo.model.download.AddToDownloadListStatsRequest',\n request: {\n parentId: props.entityId,\n concreteType:\n 'org.sagebionetworks.repo.model.download.AddToDownloadListRequest',\n recursive: true,\n },\n },\n {\n enabled: isFolderOrProject,\n },\n )\n\n const folderOrProjectHasNoFiles =\n isFolderOrProject &&\n (isLoadingFolderOrProjectStats \|\| folderOrProjectStats?.fileCount === 0)\n\n const { data: entityData } = useGetEntity(props.entityId)\n\n const { downloadFile } = useDirectDownloadHandler()\n\n const fileHandleId =\n entityData && isFileEntity(entityData)\n ? entityData.dataFileHandleId\n : undefined\n\n const onDownloadFile = fileHandleId\n ? () => {\n void downloadFile({\n fileHandleId,\n associatedObjectId: props.entityId,\n associatedObjectType: FileHandleAssociateType.FileEntity,\n })\n }\n : undefined\n\n const entityViewHasNoFiles =\n entityData && isEntityView(entityData) && !hasFilesInView(entityData)\n\n const datasetHasNoFiles =\n entityData &&\n isDataset(entityData) &&\n (!entityData.items \|\| entityData.items.length === 0)\n\n const addToCartDisabled =\n folderOrProjectHasNoFiles \|\| entityViewHasNoFiles \|\| datasetHasNoFiles\n\n // state to manage export metadata modal visibility\n const [showExportMetadata, setShowExportMetadata] = useState<boolean>(false)\n\n const handleCloseExportMetadata = () => {\n setShowExportMetadata(false)\n }\n\n // Create download menu items\n const downloadActions = getDownloadActionsForEntityType(props.entityType)\n const downloadMenuItems = downloadActions.map(actionGroup =>\n actionGroup.map(action =>\n getMenuItemForAction(\n props.entityId,\n props.name,\n props.entityType,\n action,\n setShowProgrammaticAccess,\n setShowExportMetadata,\n addFileToDownloadList,\n addQueryToDownloadList,\n latestVersionNumber,\n addToCartDisabled,\n onDownloadFile,\n isAuthenticated,\n ),\n ),\n )\n\n // Return programmatic access modal content\n const { cliCode, rCode, pythonCode } = getProgrammaticAccessCode(\n props.entityType,\n props.entityId,\n latestVersionNumber,\n )\n\n return (\n <>\n <DropdownMenu\n items={downloadMenuItems}\n dropdownButtonText=\"Download\"\n buttonTooltip=\"Download options for this entity\"\n buttonProps={{\n variant: 'outlined',\n startIcon: <DownloadIcon />,\n }}\n />\n <ProgrammaticInstructionsModal\n show={showProgrammaticAccess}\n title={`Programmatic Access: ${props.name}`}\n onClose={handleCloseProgrammaticAccess}\n pythonCode={pythonCode}\n rCode={rCode}\n cliCode={cliCode}\n 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1	+ {"version":3,"file":"EntityDownloadButton.js","sources":["../../../src/components/EntityDownloadButton/EntityDownloadButton.tsx"],"sourcesContent":["import { useGetEntity, useGetVersions } from '@/synapse-queries'\nimport {\n useAddFileToDownloadList,\n useGetAddToDownloadListStats,\n} from '@/synapse-queries/index'\nimport { useSynapseContext } from '@/utils'\nimport {\n entityTypeToFriendlyName,\n hasFilesInView,\n isContainerType,\n isDataset,\n isEntityView,\n isVersionableEntity,\n} from '@/utils/functions/EntityTypeUtils'\nimport { useDirectDownloadHandler } from '@/utils/hooks/useDirectDownloadHandler'\nimport { isFileEntity } from '@/utils/types/IsType'\nimport { DownloadOutlined as DownloadIcon } from '@mui/icons-material'\nimport { EntityType } from '@sage-bionetworks/synapse-client'\nimport {\n FileHandleAssociateType,\n QueryBundleRequest,\n} from '@sage-bionetworks/synapse-types'\nimport { RefObject, useState } from 'react'\nimport { createPortal } from 'react-dom'\nimport { displayFilesWereAddedToDownloadListSuccess } from '../download_list/DownloadConfirmationUtils'\nimport { EntityDownloadConfirmation } from '../EntityDownloadConfirmation'\nimport { DropdownMenu, DropdownMenuItem } from '../menu/DropdownMenu'\nimport { ModalDownload } from '../ModalDownload/ModalDownload'\nimport { ProgrammaticInstructionsModal } from '../ProgrammaticInstructionsModal/ProgrammaticInstructionsModal'\nimport { displayToast } from '../ToastMessage/index'\n\n// WIP\n// Per Nick Grosenbacher: For this to be reusable, I think we would also need to accept versionNumber as a prop. Where we would have the following behavior:\n// - If the version number is present, use it\n// - If the version number is null, do not use it,\n// - If the version number is undefined, then we would try to do the 'smart' thing-- get the latest version for datasets, otherwise don't use it.\n\n// Have to keep these consts outside of getProgrammaticAccessCode because\n// they are being called in ProgrammaticTableDownload.tsx\n// Python client import and login instructions\nexport const PYTHON_CLIENT_IMPORT_AND_LOGIN = `import synapseclient\nsyn = synapseclient.Synapse()\nsyn.login(authToken=\"YOUR_TOKEN_HERE\")`\n\n// R client import and login instructions\nexport const R_CLIENT_IMPORT_AND_LOGIN = `library(synapser)\nsynLogin(authToken=\"YOUR_TOKEN_HERE\")`\n\ntype ProgrammaticAccessCode = {\n cliCode: string \| undefined\n rCode: string \| undefined\n pythonCode: string \| undefined\n}\n\n// Generate programmatic access code snippet content based on entity type\nfunction getProgrammaticAccessCode(\n type: EntityType,\n entityId: string,\n version: number \| undefined,\n): ProgrammaticAccessCode {\n const id =\n type === EntityType.dataset && version ? `${entityId}.${version}` : entityId\n switch (type) {\n case EntityType.file:\n case EntityType.folder:\n case EntityType.project:\n case EntityType.link:\n return {\n cliCode: `synapse get -r ${entityId}`,\n rCode: `${R_CLIENT_IMPORT_AND_LOGIN} \\n\n# Download file\nsynGet('${entityId}')`,\n pythonCode: `${PYTHON_CLIENT_IMPORT_AND_LOGIN} \\n\n# Download file\nsyn.get('${entityId}')`,\n }\n case EntityType.dockerrepo:\n return {\n cliCode: `docker login -u <synapse username> -p <synapse password> docker.synapse.org \\n\ndocker pull docker.synapse.org/${entityId}/myrepo`,\n rCode: undefined,\n pythonCode: undefined,\n }\n case EntityType.dataset:\n case EntityType.entityview:\n case EntityType.datasetcollection:\n case EntityType.table:\n case EntityType.materializedview:\n case EntityType.submissionview:\n case EntityType.virtualtable:\n case EntityType.recordset:\n return {\n cliCode: `synapse get -q \"SELECT * FROM ${id}\"`,\n rCode: `${R_CLIENT_IMPORT_AND_LOGIN} \\n\nquery <- synTableQuery(\"SELECT * FROM ${id}\")\nread.table(query$filepath, sep=\",\")`,\n pythonCode: `${PYTHON_CLIENT_IMPORT_AND_LOGIN} \\n\nquery = syn.tableQuery(\"SELECT * FROM ${id}\")\nquery.asDataFrame()`,\n }\n default:\n throw new Error(`Unhandled EntityType: ${type}`)\n }\n}\n\nenum DownloadAction {\n downloadFile,\n addToCart,\n programmaticAccess,\n programmaticAccessDocker,\n exportTable,\n}\n\n// Function that creates menu items for download actions\nfunction getMenuItemForAction(\n entityId: string,\n entityName: string,\n entityType: EntityType,\n downloadAction: DownloadAction,\n setShowProgrammaticAccess: (show: boolean) => void,\n setShowExportMetadata: (show: boolean) => void,\n addFileToDownloadList: (params: {\n entityId: string\n entityVersionNumber: number \| undefined\n }) => void,\n setShowDownloadConfirmation: (show: boolean) => void,\n versionNumber?: number,\n addToCartDisabled?: boolean,\n onDownloadFile?: () => void,\n isAuthenticated?: boolean,\n): DropdownMenuItem {\n switch (downloadAction) {\n case DownloadAction.downloadFile:\n return {\n text: 'Download File',\n onClick: () => {\n if (onDownloadFile) onDownloadFile()\n },\n tooltipText: isAuthenticated\n ? 'Download this file directly'\n : 'Sign in to download this file',\n disabled: !isAuthenticated,\n }\n case DownloadAction.addToCart:\n return {\n text: 'Add to Download Cart',\n disabled: addToCartDisabled,\n tooltipText: getAddToCartTooltip(entityType, !!addToCartDisabled),\n onClick: () => {\n if (\n entityType === EntityType.file \|\|\n entityType === EntityType.recordset\n ) {\n addFileToDownloadList({\n entityId,\n entityVersionNumber: versionNumber,\n })\n } else {\n setShowDownloadConfirmation(true)\n }\n },\n }\n case DownloadAction.programmaticAccess:\n return {\n text: 'Programmatic Access',\n onClick: () => {\n setShowProgrammaticAccess(true)\n },\n tooltipText: 'View programmatic access options',\n }\n case DownloadAction.programmaticAccessDocker:\n return {\n text: 'Programmatic Access (Docker)',\n onClick: () => {\n setShowProgrammaticAccess(true)\n },\n tooltipText: 'View programmatic options to pull Docker image',\n }\n case DownloadAction.exportTable:\n return {\n text: 'Export Table',\n onClick: () => {\n setShowExportMetadata(true)\n },\n tooltipText: 'Export table data',\n }\n }\n}\n\n/*\n Determines the tooltip message based on the entity type and its \"add to cart\" status.\n /\nconst getAddToCartTooltip = (\n entityType: EntityType,\n isDisabled: boolean,\n): string => {\n if (!isDisabled) {\n return 'Add file(s) to your download cart'\n }\n const entityFriendlyName = entityTypeToFriendlyName(entityType)\n return `This ${entityFriendlyName} has no accessible files`\n}\n\n// Function that returns DropdownMenuItem\nexport function getDownloadActionsForEntityType(\n type: EntityType,\n): DownloadAction[][] {\n switch (type) {\n case EntityType.file:\n case EntityType.recordset:\n return [\n [DownloadAction.downloadFile],\n [DownloadAction.addToCart, DownloadAction.programmaticAccess],\n ]\n case EntityType.project:\n case EntityType.folder:\n return [[DownloadAction.addToCart, DownloadAction.programmaticAccess]]\n case EntityType.dockerrepo:\n return [[DownloadAction.programmaticAccessDocker]]\n case EntityType.entityview:\n case EntityType.dataset:\n return [\n [\n DownloadAction.exportTable,\n DownloadAction.programmaticAccess,\n DownloadAction.addToCart,\n ],\n ]\n case EntityType.datasetcollection:\n case EntityType.table:\n case EntityType.materializedview:\n case EntityType.submissionview:\n case EntityType.virtualtable:\n return [[DownloadAction.exportTable, DownloadAction.programmaticAccess]]\n case EntityType.link:\n return [[DownloadAction.programmaticAccess]]\n default:\n // this will fail if a new EntityType is added and not handled\n throw new Error(`Unhandled EntityType: ${type}`)\n }\n}\n\n// get the appropriate version number for download based on entity type\n// for datasets: returns the most recent released version if any exist, undefined otherwise\n// for other entities: returns the current version number\nfunction useGetLatestVersionNumber(entityId: string, entityType: EntityType) {\n // get entity data\n const { data: entityData, isLoading: entityDataLoading } =\n useGetEntity(entityId) // No version = latest\n\n // for datasets, check if any versions exist and use the most recent one\n const mustGetVersion = entityType === EntityType.dataset\n const { data: versionsData, isLoading: versionsLoading } = useGetVersions(\n entityId,\n 0,\n 1,\n {\n enabled: mustGetVersion,\n },\n )\n\n let latestVersionNumber: number \| undefined\n\n if (mustGetVersion) {\n // for datasets, check if any versions exist\n if (versionsData?.results && versionsData.results.length > 0) {\n // Use the most recent released version (first in the list, since versions are returned in descending order)\n latestVersionNumber = versionsData.results[0].versionNumber\n } else {\n // no versions exist, use undefined (will use current/draft version)\n latestVersionNumber = undefined\n }\n } else {\n // for non-datasets, use the entity's version number\n latestVersionNumber =\n entityData && isVersionableEntity(entityData)\n ? entityData.versionNumber\n : undefined\n }\n\n const isLoading = entityDataLoading \|\| versionsLoading\n\n return { latestVersionNumber, isLoading }\n}\n\n// create default queryBundleRequest with appropriate SQL\nfunction getDefaultQueryBundleRequestForEntity(\n entityId: string,\n versionNumber: number \| undefined,\n entityType: EntityType,\n): QueryBundleRequest {\n let sql: string\n\n if (entityType === EntityType.dataset) {\n // for datasets:\n // - if a version number exists (released version), use it: syn123.5\n // - if no version number (no released versions), use current/draft: syn123\n sql = versionNumber\n ? `SELECT FROM ${entityId}.${versionNumber}`\n : `SELECT * FROM ${entityId}`\n } else {\n // For non-datasets, always use entity ID without version\n sql = `SELECT * FROM ${entityId}`\n }\n\n return {\n concreteType: 'org.sagebionetworks.repo.model.table.QueryBundleRequest',\n entityId: `${entityId}`,\n query: {\n sql: sql,\n },\n partMask: 0,\n }\n}\n\nexport function EntityDownloadButton(props: {\n entityId: string\n name: string\n entityType: EntityType\n downloadConfirmationContainer?: RefObject<HTMLElement \| null>\n disabled?: boolean\n}) {\n // get the appropriate version number for the entity\n const { latestVersionNumber } = useGetLatestVersionNumber(\n props.entityId,\n props.entityType,\n )\n // create queryBundleRequest with appropriate SQL based on entity type and version\n const defaultQueryBundleRequest = getDefaultQueryBundleRequestForEntity(\n props.entityId,\n latestVersionNumber,\n props.entityType,\n )\n\n // Get context and download functionality\n const { downloadCartPageUrl, isAuthenticated } = useSynapseContext()\n const { mutate: addFileToDownloadList } = useAddFileToDownloadList({\n onSuccess: data => {\n if (data.numberOfFilesAdded > 0) {\n displayFilesWereAddedToDownloadListSuccess(downloadCartPageUrl)\n } else {\n displayToast('0 Files added to your Download Cart', 'info')\n }\n },\n onError: error => {\n displayToast(error.reason, 'danger')\n },\n })\n\n // state to manage programmatic access modal visibility\n const [showProgrammaticAccess, setShowProgrammaticAccess] =\n useState<boolean>(false)\n\n // state to manage download confirmation visibility and loading\n const [showDownloadConfirmation, setShowDownloadConfirmation] =\n useState<boolean>(false)\n const [downloadConfirmationLoading, setDownloadConfirmationLoading] =\n useState<boolean>(false)\n\n const handleCloseProgrammaticAccess = () => {\n setShowProgrammaticAccess(false)\n }\n\n const isFolderOrProject = isContainerType(props.entityType)\n\n const {\n data: folderOrProjectStats,\n isLoading: isLoadingFolderOrProjectStats,\n } = useGetAddToDownloadListStats(\n {\n concreteType:\n 'org.sagebionetworks.repo.model.download.AddToDownloadListStatsRequest',\n request: {\n parentId: props.entityId,\n concreteType:\n 'org.sagebionetworks.repo.model.download.AddToDownloadListRequest',\n recursive: true,\n },\n },\n {\n enabled: isFolderOrProject,\n },\n )\n\n const folderOrProjectHasNoFiles =\n isFolderOrProject &&\n (isLoadingFolderOrProjectStats \|\| folderOrProjectStats?.fileCount === 0)\n\n const { data: entityData } = useGetEntity(props.entityId)\n\n const { downloadFile } = useDirectDownloadHandler()\n\n const fileHandleId =\n entityData && isFileEntity(entityData)\n ? 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package/dist/components/SynapseHomepageV2/SynapseHomepageChatSearch.d.ts.map CHANGED Viewed

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