synapse-react-client 3.1.5 → 3.1.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/assets/themed_icons/Program.d.ts +2 -0
- package/dist/assets/themed_icons/Program.js +14 -0
- package/dist/assets/themed_icons/Program.js.map +1 -0
- package/dist/assets/themed_icons/index.d.ts +2 -1
- package/dist/assets/themed_icons/index.js +3 -1
- package/dist/assets/themed_icons/index.js.map +1 -1
- package/dist/containers/DiscussionSearchResult.d.ts +1 -1
- package/dist/containers/ErrorBanner.d.ts +1 -0
- package/dist/containers/ErrorBanner.js +20 -7
- package/dist/containers/ErrorBanner.js.map +1 -1
- package/dist/containers/FilePreview/EntityPreview.d.ts +11 -0
- package/dist/containers/FilePreview/EntityPreview.js +38 -0
- package/dist/containers/FilePreview/EntityPreview.js.map +1 -0
- package/dist/containers/FilePreview/FileEntityPreview.d.ts +12 -0
- package/dist/containers/FilePreview/FileEntityPreview.js +63 -0
- package/dist/containers/FilePreview/FileEntityPreview.js.map +1 -0
- package/dist/containers/FilePreview/FileHandleContentRenderer.d.ts +17 -0
- package/dist/containers/FilePreview/FileHandleContentRenderer.js +39 -0
- package/dist/containers/FilePreview/FileHandleContentRenderer.js.map +1 -0
- package/dist/containers/FilePreview/PreviewRendererType.d.ts +19 -0
- package/dist/containers/FilePreview/PreviewRendererType.js +26 -0
- package/dist/containers/FilePreview/PreviewRendererType.js.map +1 -0
- package/dist/containers/FilePreview/PreviewUtils.d.ts +22 -0
- package/dist/containers/FilePreview/PreviewUtils.js +157 -0
- package/dist/containers/FilePreview/PreviewUtils.js.map +1 -0
- package/dist/containers/IconSvg.d.ts +1 -1
- package/dist/containers/IconSvg.js +15 -0
- package/dist/containers/IconSvg.js.map +1 -1
- package/dist/containers/ProgrammaticInstructionsModal.d.ts +1 -0
- package/dist/containers/ProgrammaticInstructionsModal.js +1 -0
- package/dist/containers/ProgrammaticInstructionsModal.js.map +1 -1
- package/dist/containers/SqlEditor.js +1 -1
- package/dist/containers/SqlEditor.js.map +1 -1
- package/dist/containers/TotalQueryResults.js +17 -14
- package/dist/containers/TotalQueryResults.js.map +1 -1
- package/dist/containers/entity_finder/EntityFinder.js +3 -10
- package/dist/containers/entity_finder/EntityFinder.js.map +1 -1
- package/dist/containers/markdown/MarkdownWidget.d.ts +7 -2
- package/dist/containers/markdown/MarkdownWidget.js +10 -1
- package/dist/containers/markdown/MarkdownWidget.js.map +1 -1
- package/dist/containers/markdown/widget/MarkdownEntityPreview.d.ts +8 -0
- package/dist/containers/markdown/widget/MarkdownEntityPreview.js +21 -0
- package/dist/containers/markdown/widget/MarkdownEntityPreview.js.map +1 -0
- package/dist/containers/oauth/CreateOAuthClient.js +36 -43
- package/dist/containers/oauth/CreateOAuthClient.js.map +1 -1
- package/dist/containers/provenance/ProvenanceGraph.js +9 -1
- package/dist/containers/provenance/ProvenanceGraph.js.map +1 -1
- package/dist/containers/row_renderers/utils/Icon.js +1 -0
- package/dist/containers/row_renderers/utils/Icon.js.map +1 -1
- package/dist/containers/synapse_table_functions/SynapseTableCell.d.ts +1 -3
- package/dist/containers/synapse_table_functions/SynapseTableCell.js +2 -20
- package/dist/containers/synapse_table_functions/SynapseTableCell.js.map +1 -1
- package/dist/containers/table/ExpandableTableDataCell.d.ts +2 -0
- package/dist/containers/table/ExpandableTableDataCell.js +44 -0
- package/dist/containers/table/ExpandableTableDataCell.js.map +1 -0
- package/dist/containers/table/SynapseTable.js +3 -2
- package/dist/containers/table/SynapseTable.js.map +1 -1
- package/dist/containers/table/table-top/DownloadOptions.js +2 -2
- package/dist/containers/table/table-top/DownloadOptions.js.map +1 -1
- package/dist/containers/table/table-top/ProgrammaticOptions.d.ts +8 -0
- package/dist/containers/table/table-top/ProgrammaticOptions.js +45 -0
- package/dist/containers/table/table-top/ProgrammaticOptions.js.map +1 -0
- package/dist/index.d.ts +2 -2
- package/dist/index.js +2 -2
- package/dist/index.js.map +1 -1
- package/dist/style/base/_core.scss +0 -11
- package/dist/style/components/_all.scss +1 -1
- package/dist/style/components/_discussion-forum.scss +33 -0
- package/dist/style/components/_expandable_table_data.scss +27 -0
- package/dist/style/components/_oauth-editor.scss +6 -0
- package/dist/style/components/_query-wrapper-plot-nav.scss +4 -2
- package/dist/style/components/_total-query-results.scss +11 -13
- package/dist/umd/synapse-react-client.development.css +68 -24
- package/dist/umd/synapse-react-client.development.css.map +2 -2
- package/dist/umd/synapse-react-client.development.js +9278 -6988
- package/dist/umd/synapse-react-client.development.js.map +4 -4
- package/dist/umd/synapse-react-client.production.min.css +1 -1
- package/dist/umd/synapse-react-client.production.min.js +83 -74
- package/dist/umd.index.d.ts +2 -2
- package/dist/umd.index.js +2 -2
- package/dist/umd.index.js.map +1 -1
- package/dist/utils/APIConstants.d.ts +3 -0
- package/dist/utils/APIConstants.js +6 -1
- package/dist/utils/APIConstants.js.map +1 -1
- package/dist/utils/SynapseClient.d.ts +7 -1
- package/dist/utils/SynapseClient.js +32 -2
- package/dist/utils/SynapseClient.js.map +1 -1
- package/dist/utils/SynapseConstants.d.ts +2 -0
- package/dist/utils/SynapseConstants.js +4 -2
- package/dist/utils/SynapseConstants.js.map +1 -1
- package/dist/utils/functions/RegularExpressions.d.ts +8 -0
- package/dist/utils/functions/RegularExpressions.js +20 -1
- package/dist/utils/functions/RegularExpressions.js.map +1 -1
- package/dist/utils/functions/ResolveLinkEntity.d.ts +10 -0
- package/dist/utils/functions/ResolveLinkEntity.js +54 -0
- package/dist/utils/functions/ResolveLinkEntity.js.map +1 -0
- package/dist/utils/hooks/SynapseAPI/file/useFiles.d.ts +4 -0
- package/dist/utils/hooks/SynapseAPI/file/useFiles.js +31 -0
- package/dist/utils/hooks/SynapseAPI/file/useFiles.js.map +1 -0
- package/dist/utils/synapseTypes/DiscussionBundle.d.ts +3 -0
- package/dist/utils/synapseTypes/DiscussionBundle.js +5 -1
- package/dist/utils/synapseTypes/DiscussionBundle.js.map +1 -1
- package/dist/utils/synapseTypes/Table/QueryResultBundle.d.ts +1 -0
- package/package.json +12 -12
- package/dist/containers/table/table-top/ProgrammaticTableDownload.d.ts +0 -9
- package/dist/containers/table/table-top/ProgrammaticTableDownload.js +0 -71
- package/dist/containers/table/table-top/ProgrammaticTableDownload.js.map +0 -1
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@@ -1,6 +1,6 @@
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.SYNAPSE_ENTITY_ID_REGEX = exports.DOI_REGEX = void 0;
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exports.parseSynId = exports.SYNAPSE_ENTITY_ID_REGEX = exports.DOI_REGEX = void 0;
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// doi regex here - https://www.crossref.org/blog/dois-and-matching-regular-expressions/
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// note - had to add an escape character for the second and third forward slash in the regex above
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exports.DOI_REGEX = /^10.\d{4,9}\/[-._;()\/:a-z0-9]+$/i;
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@@ -18,4 +18,23 @@ exports.DOI_REGEX = /^10.\d{4,9}\/[-._;()\/:a-z0-9]+$/i;
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* '9'
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*/
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exports.SYNAPSE_ENTITY_ID_REGEX = /^(syn\d+)(?:\.(\d+))?$/;
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/**
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* Given a Synapse Entity ID of the form `syn123` or `syn123.4`, returns the
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* Reference object containing the entity ID and optional version number.
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* If the ID is not a valid Synapse Entity ID, returns null.
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* @param synId
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*/
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function parseSynId(synId) {
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var synIdMatch = exports.SYNAPSE_ENTITY_ID_REGEX.exec(synId);
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if (synIdMatch) {
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return {
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targetId: synIdMatch[1],
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targetVersionNumber: synIdMatch[2] ? parseInt(synIdMatch[2]) : undefined,
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};
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}
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else {
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return synIdMatch;
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}
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}
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exports.parseSynId = parseSynId;
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//# sourceMappingURL=RegularExpressions.js.map
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{"version":3,"file":"RegularExpressions.js","sourceRoot":"","sources":["../../../src/lib/utils/functions/RegularExpressions.ts"],"names":[],"mappings":";;;
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{"version":3,"file":"RegularExpressions.js","sourceRoot":"","sources":["../../../src/lib/utils/functions/RegularExpressions.ts"],"names":[],"mappings":";;;AAEA,wFAAwF;AACxF,kGAAkG;AACrF,QAAA,SAAS,GAAG,mCAAmC,CAAA;AAE5D;;;;;;;;;;;;GAYG;AACU,QAAA,uBAAuB,GAAG,wBAAwB,CAAA;AAE/D;;;;;GAKG;AACH,SAAgB,UAAU,CAAC,KAAa;IACtC,IAAM,UAAU,GAAG,+BAAuB,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;IACtD,IAAI,UAAU,EAAE;QACd,OAAO;YACL,QAAQ,EAAE,UAAU,CAAC,CAAC,CAAC;YACvB,mBAAmB,EAAE,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS;SACzE,CAAA;KACF;SAAM;QACL,OAAO,UAAU,CAAA;KAClB;AACH,CAAC;AAVD,gCAUC"}
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import { QueryOptions } from 'react-query';
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import { Entity } from '../synapseTypes';
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/**
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* Follows a Synapse entity ID to the end of the chain of links
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* @param synId the ID of a Synapse entity that may be a link
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* @returns the ID of the entity at the end of the chain of links
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* @throws an error if a link is found that does not resolve, or if a cycle is found
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*/
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export declare function resolveLinkEntity(synId: string, versionNumber?: number, accessToken?: string): Promise<Entity>;
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export declare function useResolveLinkEntity(synId: string, versionNumber?: number, options?: QueryOptions<Entity>): import("react-query").UseQueryResult<Entity, unknown>;
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.useResolveLinkEntity = exports.resolveLinkEntity = void 0;
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var tslib_1 = require("tslib");
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var react_query_1 = require("react-query");
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var SynapseClient_1 = require("../SynapseClient");
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var SynapseContext_1 = require("../SynapseContext");
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var synapseTypes_1 = require("../synapseTypes");
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/**
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* Follows a Synapse entity ID to the end of the chain of links
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* @param synId the ID of a Synapse entity that may be a link
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* @returns the ID of the entity at the end of the chain of links
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* @throws an error if a link is found that does not resolve, or if a cycle is found
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*/
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function resolveLinkEntity(synId, versionNumber, accessToken) {
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return tslib_1.__awaiter(this, void 0, void 0, function () {
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var seen, currentEntity, e_1;
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return tslib_1.__generator(this, function (_a) {
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switch (_a.label) {
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case 0:
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seen = new Set();
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_a.label = 1;
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case 1:
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_a.trys.push([1, 6, , 7]);
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return [4 /*yield*/, (0, SynapseClient_1.getEntity)(accessToken, synId, versionNumber)];
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case 2:
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currentEntity = _a.sent();
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_a.label = 3;
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case 3:
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if (!(0, synapseTypes_1.isLink)(currentEntity)) return [3 /*break*/, 5];
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if (seen.has(currentEntity.id)) {
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throw new Error('Link forms a cycle.');
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}
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seen.add(currentEntity.id);
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return [4 /*yield*/, (0, SynapseClient_1.getEntity)(accessToken, currentEntity.linksTo.targetId, currentEntity.linksTo.targetVersionNumber)];
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case 4:
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currentEntity = _a.sent();
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return [3 /*break*/, 3];
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case 5: return [2 /*return*/, currentEntity];
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case 6:
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e_1 = _a.sent();
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throw new Error("".concat(synId, " could not be resolved.\n").concat(e_1.message));
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case 7: return [2 /*return*/];
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}
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});
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});
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}
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exports.resolveLinkEntity = resolveLinkEntity;
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function useResolveLinkEntity(synId, versionNumber, options) {
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var accessToken = (0, SynapseContext_1.useSynapseContext)().accessToken;
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return (0, react_query_1.useQuery)(['resolveLinkEntity', synId, versionNumber], function () { return resolveLinkEntity(synId, versionNumber, accessToken); }, options);
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}
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exports.useResolveLinkEntity = useResolveLinkEntity;
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//# sourceMappingURL=ResolveLinkEntity.js.map
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{"version":3,"file":"ResolveLinkEntity.js","sourceRoot":"","sources":["../../../src/lib/utils/functions/ResolveLinkEntity.ts"],"names":[],"mappings":";;;;AAAA,2CAAoD;AACpD,kDAA4C;AAC5C,oDAAqD;AACrD,gDAAgD;AAEhD;;;;;GAKG;AACH,SAAsB,iBAAiB,CACrC,KAAa,EACb,aAAsB,EACtB,WAAoB;;;;;;oBAGd,IAAI,GAAgB,IAAI,GAAG,EAAE,CAAA;;;;oBAEb,qBAAM,IAAA,yBAAS,EAAC,WAAW,EAAE,KAAK,EAAE,aAAa,CAAC,EAAA;;oBAAlE,aAAa,GAAG,SAAkD;;;yBAC/D,IAAA,qBAAM,EAAC,aAAa,CAAC;oBAC1B,IAAI,IAAI,CAAC,GAAG,CAAC,aAAa,CAAC,EAAG,CAAC,EAAE;wBAC/B,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAA;qBACvC;oBACD,IAAI,CAAC,GAAG,CAAC,aAAa,CAAC,EAAG,CAAC,CAAA;oBACX,qBAAM,IAAA,yBAAS,EAC7B,WAAW,EACX,aAAa,CAAC,OAAO,CAAC,QAAQ,EAC9B,aAAa,CAAC,OAAO,CAAC,mBAAmB,CAC1C,EAAA;;oBAJD,aAAa,GAAG,SAIf,CAAA;;wBAEH,sBAAO,aAAa,EAAA;;;oBAEpB,MAAM,IAAI,KAAK,CAAC,UAAG,KAAK,sCAA6B,GAAW,CAAC,OAAO,CAAE,CAAC,CAAA;;;;;CAE9E;AAxBD,8CAwBC;AAED,SAAgB,oBAAoB,CAClC,KAAa,EACb,aAAsB,EACtB,OAA8B;IAEtB,IAAA,WAAW,GAAK,IAAA,kCAAiB,GAAE,YAAxB,CAAwB;IAC3C,OAAO,IAAA,sBAAQ,EACb,CAAC,mBAAmB,EAAE,KAAK,EAAE,aAAa,CAAC,EAC3C,cAAM,OAAA,iBAAiB,CAAC,KAAK,EAAE,aAAa,EAAE,WAAW,CAAC,EAApD,CAAoD,EAC1D,OAAO,CACR,CAAA;AACH,CAAC;AAXD,oDAWC"}
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import { UseQueryOptions } from 'react-query';
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import { SynapseClientError } from '../../../SynapseClientError';
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import { BatchFileRequest, FileHandle } from '../../../synapseTypes';
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export declare function useGetPresignedUrlContent(fileHandle: FileHandle, request: BatchFileRequest, maxFileSizeBytes?: number, options?: Omit<UseQueryOptions<string, SynapseClientError>, 'staleTime'>): import("react-query").UseQueryResult<string, SynapseClientError>;
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exports.useGetPresignedUrlContent = void 0;
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var react_query_1 = require("react-query");
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var __1 = require("../../..");
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var SynapseContext_1 = require("../../../SynapseContext");
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function useGetPresignedUrlContent(fileHandle, request, maxFileSizeBytes, options) {
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console.warn('useGetPresignedUrlContent only supports one file at a time');
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}
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var accessToken = (0, SynapseContext_1.useSynapseContext)().accessToken;
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var queryFn = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
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switch (_a.label) {
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case 0: return [4 /*yield*/, __1.SynapseClient.getFiles(request, accessToken)];
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case 1:
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batchFileResult = _a.sent();
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return [4 /*yield*/, __1.SynapseClient.getFileHandleContent(fileHandle, batchFileResult.requestedFiles[0].preSignedURL, maxFileSizeBytes)];
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}
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});
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}); };
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return (0, react_query_1.useQuery)(['presignedUrlContent', fileHandle, request], queryFn, tslib_1.__assign({ staleTime: Infinity }, options));
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}
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exports.useGetPresignedUrlContent = useGetPresignedUrlContent;
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{"version":3,"file":"useFiles.js","sourceRoot":"","sources":["../../../../../src/lib/utils/hooks/SynapseAPI/file/useFiles.ts"],"names":[],"mappings":";;;;AAAA,2CAAuD;AACvD,8BAAwC;AAExC,0DAA2D;AAG3D,SAAgB,yBAAyB,CACvC,UAAsB,EACtB,OAAyB,EACzB,gBAAyB,EACzB,OAAwE;IAJ1E,iBA2BC;IArBC,IAAI,OAAO,CAAC,cAAc,CAAC,MAAM,KAAK,CAAC,EAAE;QACvC,OAAO,CAAC,IAAI,CAAC,4DAA4D,CAAC,CAAA;KAC3E;IACO,IAAA,WAAW,GAAK,IAAA,kCAAiB,GAAE,YAAxB,CAAwB;IAC3C,IAAM,OAAO,GAAG;;;;wBACU,qBAAM,iBAAa,CAAC,QAAQ,CAAC,OAAO,EAAE,WAAW,CAAC,EAAA;;oBAApE,eAAe,GAAG,SAAkD;oBAC7D,qBAAM,iBAAa,CAAC,oBAAoB,CACnD,UAAU,EACV,eAAe,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,YAAa,EAC/C,gBAAgB,CACjB,EAAA;;oBAJK,IAAI,GAAG,SAIZ;oBACD,sBAAO,IAAI,EAAA;;;SACZ,CAAA;IACD,OAAO,IAAA,sBAAQ,EACb,CAAC,qBAAqB,EAAE,UAAU,EAAE,OAAO,CAAC,EAC5C,OAAO,qBAEL,SAAS,EAAE,QAAQ,IAChB,OAAO,EAEb,CAAA;AACH,CAAC;AA3BD,8DA2BC"}
|
|
@@ -35,6 +35,9 @@ export declare enum DiscussionThreadOrder {
|
|
|
35
35
|
PINNED_AND_LAST_ACTIVITY = "PINNED_AND_LAST_ACTIVITY",
|
|
36
36
|
THREAD_TITLE = "THREAD_TITLE"
|
|
37
37
|
}
|
|
38
|
+
export declare enum DiscussionReplyOrder {
|
|
39
|
+
CREATED_ON = "CREATED_ON"
|
|
40
|
+
}
|
|
38
41
|
export declare enum DiscussionFilter {
|
|
39
42
|
NO_FILTER = "NO_FILTER",
|
|
40
43
|
DELETED_ONLY = "DELETED_ONLY",
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.DiscussionFilter = exports.DiscussionThreadOrder = void 0;
|
|
3
|
+
exports.DiscussionFilter = exports.DiscussionReplyOrder = exports.DiscussionThreadOrder = void 0;
|
|
4
4
|
var DiscussionThreadOrder;
|
|
5
5
|
(function (DiscussionThreadOrder) {
|
|
6
6
|
DiscussionThreadOrder["NUMBER_OF_REPLIES"] = "NUMBER_OF_REPLIES";
|
|
@@ -8,6 +8,10 @@ var DiscussionThreadOrder;
|
|
|
8
8
|
DiscussionThreadOrder["PINNED_AND_LAST_ACTIVITY"] = "PINNED_AND_LAST_ACTIVITY";
|
|
9
9
|
DiscussionThreadOrder["THREAD_TITLE"] = "THREAD_TITLE";
|
|
10
10
|
})(DiscussionThreadOrder = exports.DiscussionThreadOrder || (exports.DiscussionThreadOrder = {}));
|
|
11
|
+
var DiscussionReplyOrder;
|
|
12
|
+
(function (DiscussionReplyOrder) {
|
|
13
|
+
DiscussionReplyOrder["CREATED_ON"] = "CREATED_ON";
|
|
14
|
+
})(DiscussionReplyOrder = exports.DiscussionReplyOrder || (exports.DiscussionReplyOrder = {}));
|
|
11
15
|
var DiscussionFilter;
|
|
12
16
|
(function (DiscussionFilter) {
|
|
13
17
|
DiscussionFilter["NO_FILTER"] = "NO_FILTER";
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"DiscussionBundle.js","sourceRoot":"","sources":["../../../src/lib/utils/synapseTypes/DiscussionBundle.ts"],"names":[],"mappings":";;;AAkCA,IAAY,qBAKX;AALD,WAAY,qBAAqB;IAC/B,gEAAuC,CAAA;IACvC,4DAAmC,CAAA;IACnC,8EAAqD,CAAA;IACrD,sDAA6B,CAAA;AAC/B,CAAC,EALW,qBAAqB,GAArB,6BAAqB,KAArB,6BAAqB,QAKhC;AAED,IAAY,gBAIX;AAJD,WAAY,gBAAgB;IAC1B,2CAAuB,CAAA;IACvB,iDAA6B,CAAA;IAC7B,uDAAmC,CAAA;AACrC,CAAC,EAJW,gBAAgB,GAAhB,wBAAgB,KAAhB,wBAAgB,QAI3B"}
|
|
1
|
+
{"version":3,"file":"DiscussionBundle.js","sourceRoot":"","sources":["../../../src/lib/utils/synapseTypes/DiscussionBundle.ts"],"names":[],"mappings":";;;AAkCA,IAAY,qBAKX;AALD,WAAY,qBAAqB;IAC/B,gEAAuC,CAAA;IACvC,4DAAmC,CAAA;IACnC,8EAAqD,CAAA;IACrD,sDAA6B,CAAA;AAC/B,CAAC,EALW,qBAAqB,GAArB,6BAAqB,KAArB,6BAAqB,QAKhC;AAED,IAAY,oBAEX;AAFD,WAAY,oBAAoB;IAC9B,iDAAyB,CAAA;AAC3B,CAAC,EAFW,oBAAoB,GAApB,4BAAoB,KAApB,4BAAoB,QAE/B;AAED,IAAY,gBAIX;AAJD,WAAY,gBAAgB;IAC1B,2CAAuB,CAAA;IACvB,iDAA6B,CAAA;IAC7B,uDAAmC,CAAA;AACrC,CAAC,EAJW,gBAAgB,GAAhB,wBAAgB,KAAhB,wBAAgB,QAI3B"}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "synapse-react-client",
|
|
3
|
-
"version": "3.1.
|
|
3
|
+
"version": "3.1.7",
|
|
4
4
|
"private": false,
|
|
5
5
|
"main": "dist/index.js",
|
|
6
6
|
"types": "./dist/index.d.ts",
|
|
@@ -22,6 +22,7 @@
|
|
|
22
22
|
"@material-ui/lab": "^4.0.0-alpha.57",
|
|
23
23
|
"@popperjs/core": "^2.10.2",
|
|
24
24
|
"@react-google-maps/api": "^2.13.1",
|
|
25
|
+
"@react-hook/resize-observer": "^1.2.6",
|
|
25
26
|
"@rjsf/core": "^4.2.3",
|
|
26
27
|
"@sage-bionetworks/react-base-table": "^1.13.2",
|
|
27
28
|
"@sage-bionetworks/rjsf-core": "^3.1.4",
|
|
@@ -98,17 +99,17 @@
|
|
|
98
99
|
"react-dom": "^18.2.0"
|
|
99
100
|
},
|
|
100
101
|
"devDependencies": {
|
|
101
|
-
"@babel/cli": "^7.
|
|
102
|
-
"@babel/core": "^7.
|
|
103
|
-
"@babel/plugin-proposal-class-properties": "^7.
|
|
104
|
-
"@babel/plugin-proposal-object-rest-spread": "^7.
|
|
102
|
+
"@babel/cli": "^7.19.3",
|
|
103
|
+
"@babel/core": "^7.19.3",
|
|
104
|
+
"@babel/plugin-proposal-class-properties": "^7.18.6",
|
|
105
|
+
"@babel/plugin-proposal-object-rest-spread": "^7.19.4",
|
|
105
106
|
"@babel/plugin-syntax-dynamic-import": "^7.8.3",
|
|
106
|
-
"@babel/plugin-transform-runtime": "^7.
|
|
107
|
-
"@babel/preset-env": "^7.
|
|
108
|
-
"@babel/preset-react": "^7.
|
|
109
|
-
"@babel/preset-typescript": "^7.
|
|
110
|
-
"@babel/runtime": "^7.
|
|
111
|
-
"@babel/types": "^7.
|
|
107
|
+
"@babel/plugin-transform-runtime": "^7.19.1",
|
|
108
|
+
"@babel/preset-env": "^7.19.4",
|
|
109
|
+
"@babel/preset-react": "^7.18.6",
|
|
110
|
+
"@babel/preset-typescript": "^7.18.6",
|
|
111
|
+
"@babel/runtime": "^7.19.4",
|
|
112
|
+
"@babel/types": "^7.19.4",
|
|
112
113
|
"@esbuild-plugins/node-globals-polyfill": "^0.1.1",
|
|
113
114
|
"@esbuild-plugins/node-modules-polyfill": "^0.1.4",
|
|
114
115
|
"@fal-works/esbuild-plugin-global-externals": "^2.1.2",
|
|
@@ -200,7 +201,6 @@
|
|
|
200
201
|
"stream-browserify": "^3.0.0",
|
|
201
202
|
"stream-http": "^3.2.0",
|
|
202
203
|
"timers-browserify": "^2.0.12",
|
|
203
|
-
"ts-jest": "^28.0.5",
|
|
204
204
|
"typescript": "4.7.4",
|
|
205
205
|
"util": "^0.12.4",
|
|
206
206
|
"vite": "^3.0.9",
|
|
@@ -1,9 +0,0 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
|
-
import { QueryBundleRequest, QueryResultBundle } from '../../../utils/synapseTypes';
|
|
3
|
-
declare type ProgrammaticOptionsProps = {
|
|
4
|
-
queryBundleRequest: QueryBundleRequest;
|
|
5
|
-
queryResultBundle: QueryResultBundle;
|
|
6
|
-
onHide: () => void;
|
|
7
|
-
};
|
|
8
|
-
declare function ProgrammaticOptions({ queryBundleRequest, queryResultBundle, onHide, }: ProgrammaticOptionsProps): JSX.Element;
|
|
9
|
-
export default ProgrammaticOptions;
|
|
@@ -1,71 +0,0 @@
|
|
|
1
|
-
"use strict";
|
|
2
|
-
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
var tslib_1 = require("tslib");
|
|
4
|
-
var react_1 = tslib_1.__importStar(require("react"));
|
|
5
|
-
var use_deep_compare_effect_1 = tslib_1.__importDefault(require("use-deep-compare-effect"));
|
|
6
|
-
var SynapseClient_1 = require("../../../utils/SynapseClient");
|
|
7
|
-
var ProgrammaticInstructionsModal_1 = require("../../ProgrammaticInstructionsModal");
|
|
8
|
-
function ProgrammaticOptions(_a) {
|
|
9
|
-
var _this = this;
|
|
10
|
-
var queryBundleRequest = _a.queryBundleRequest, queryResultBundle = _a.queryResultBundle, onHide = _a.onHide;
|
|
11
|
-
var _b = (0, react_1.useState)(''), generatedSql = _b[0], setGeneratedSql = _b[1];
|
|
12
|
-
(0, use_deep_compare_effect_1.default)(function () {
|
|
13
|
-
var getData = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
|
|
14
|
-
var query, sql, _a, selectedFacets, columnModels, transformSqlWithFacetsRequest, res, indexOfFrom, selectStarTransformedSql, e_1;
|
|
15
|
-
return tslib_1.__generator(this, function (_b) {
|
|
16
|
-
switch (_b.label) {
|
|
17
|
-
case 0:
|
|
18
|
-
query = queryBundleRequest.query;
|
|
19
|
-
sql = query.sql, _a = query.selectedFacets, selectedFacets = _a === void 0 ? [] : _a;
|
|
20
|
-
columnModels = queryResultBundle.columnModels;
|
|
21
|
-
if (!columnModels) {
|
|
22
|
-
console.error('Column Models must be included to complete transform sql request');
|
|
23
|
-
}
|
|
24
|
-
transformSqlWithFacetsRequest = {
|
|
25
|
-
concreteType: 'org.sagebionetworks.repo.model.table.TransformSqlWithFacetsRequest',
|
|
26
|
-
sqlToTransform: sql,
|
|
27
|
-
selectedFacets: selectedFacets,
|
|
28
|
-
schema: columnModels,
|
|
29
|
-
};
|
|
30
|
-
_b.label = 1;
|
|
31
|
-
case 1:
|
|
32
|
-
_b.trys.push([1, 3, , 4]);
|
|
33
|
-
return [4 /*yield*/, (0, SynapseClient_1.getTransformSqlWithFacetsRequest)(transformSqlWithFacetsRequest)
|
|
34
|
-
// SWC-5686: The ID column is required by the client, and this column may not have been selected!
|
|
35
|
-
// Change the SQL to "SELECT * ..."
|
|
36
|
-
];
|
|
37
|
-
case 2:
|
|
38
|
-
res = _b.sent();
|
|
39
|
-
indexOfFrom = res.transformedSql.toUpperCase().indexOf('FROM SYN');
|
|
40
|
-
selectStarTransformedSql = "SELECT * ".concat(res.transformedSql.substring(indexOfFrom));
|
|
41
|
-
setGeneratedSql(selectStarTransformedSql);
|
|
42
|
-
return [3 /*break*/, 4];
|
|
43
|
-
case 3:
|
|
44
|
-
e_1 = _b.sent();
|
|
45
|
-
console.error('Error on getTransformSqlWithFacetsRequest ', e_1);
|
|
46
|
-
return [3 /*break*/, 4];
|
|
47
|
-
case 4: return [2 /*return*/];
|
|
48
|
-
}
|
|
49
|
-
});
|
|
50
|
-
}); };
|
|
51
|
-
getData();
|
|
52
|
-
}, [queryBundleRequest, queryResultBundle]);
|
|
53
|
-
// Replace quotation marks with escaped quotations. For CLI, also escape backticks.
|
|
54
|
-
var commandLineSql = (0, react_1.useMemo)(function () { return generatedSql.replace(/(["`])/g, '\\$1'); }, [generatedSql]);
|
|
55
|
-
var clientSql = (0, react_1.useMemo)(function () { return generatedSql.replace(/"/g, '\\"'); }, [generatedSql]);
|
|
56
|
-
return (react_1.default.createElement(ProgrammaticInstructionsModal_1.ProgrammaticInstructionsModal, { show: true, onClose: onHide, title: "Download Programmatically", cliNotes: react_1.default.createElement(react_1.default.Fragment, null, "This command line code will download Synapse files AND file annotations to your working directory."), cliCode: "synapse get -q \"".concat(commandLineSql, "\""), rNotes: react_1.default.createElement(react_1.default.Fragment, null,
|
|
57
|
-
"This R code will download file annotations only. Use",
|
|
58
|
-
' ',
|
|
59
|
-
react_1.default.createElement("a", { target: "_blank", rel: "noopener noreferrer", href: "https://help.synapse.org/docs/Get-Started-with-Downloading-Data.2004254837.html#GetStartedwithDownloadingData-DownloadingFiles" },
|
|
60
|
-
"synGet",
|
|
61
|
-
'()'),
|
|
62
|
-
' ',
|
|
63
|
-
"to loop over the list of Synapse IDs from the file annotations to download files."), rCode: "query ".concat('<-', " synTableQuery(\"").concat(clientSql, "\")").concat('\n', "read.table(query$filepath, sep = \",\")"), pythonNotes: react_1.default.createElement(react_1.default.Fragment, null,
|
|
64
|
-
"This Python code will download file annotations only. Use",
|
|
65
|
-
' ',
|
|
66
|
-
react_1.default.createElement("a", { target: "_blank", rel: "noopener noreferrer", href: "https://help.synapse.org/docs/Get-Started-with-Downloading-Data.2004254837.html#GetStartedwithDownloadingData-DownloadingFiles" }, "syn.get"),
|
|
67
|
-
' ',
|
|
68
|
-
"to loop over the list of Synapse IDs from the file annotations to download files."), pythonCode: "query = syn.tableQuery(\"".concat(clientSql, "\")").concat('\n', "query.asDataFrame()") }));
|
|
69
|
-
}
|
|
70
|
-
exports.default = ProgrammaticOptions;
|
|
71
|
-
//# sourceMappingURL=ProgrammaticTableDownload.js.map
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
{"version":3,"file":"ProgrammaticTableDownload.js","sourceRoot":"","sources":["../../../../src/lib/containers/table/table-top/ProgrammaticTableDownload.tsx"],"names":[],"mappings":";;;AAAA,qDAAgD;AAMhD,4FAA0D;AAC1D,8DAA+E;AAC/E,qFAAmF;AAQnF,SAAS,mBAAmB,CAAC,EAIF;IAJ3B,iBAiGC;QAhGC,kBAAkB,wBAAA,EAClB,iBAAiB,uBAAA,EACjB,MAAM,YAAA;IAEA,IAAA,KAAkC,IAAA,gBAAQ,EAAC,EAAE,CAAC,EAA7C,YAAY,QAAA,EAAE,eAAe,QAAgB,CAAA;IACpD,IAAA,iCAAoB,EAAC;QACnB,IAAM,OAAO,GAAG;;;;;wBACN,KAAK,GAAK,kBAAkB,MAAvB,CAAuB;wBAC5B,GAAG,GAA0B,KAAK,IAA/B,EAAE,KAAwB,KAAK,eAAV,EAAnB,cAAc,mBAAG,EAAE,KAAA,CAAU;wBAClC,YAAY,GAAK,iBAAiB,aAAtB,CAAsB;wBAC1C,IAAI,CAAC,YAAY,EAAE;4BACjB,OAAO,CAAC,KAAK,CACX,kEAAkE,CACnE,CAAA;yBACF;wBACK,6BAA6B,GAAkC;4BACnE,YAAY,EACV,oEAAoE;4BACtE,cAAc,EAAE,GAAG;4BACnB,cAAc,gBAAA;4BACd,MAAM,EAAE,YAAa;yBACtB,CAAA;;;;wBAGa,qBAAM,IAAA,gDAAgC,EAChD,6BAA6B,CAC9B;4BACD,iGAAiG;4BACjG,mCAAmC;0BAFlC;;wBAFK,GAAG,GAAG,SAEX;wBAGK,WAAW,GAAG,GAAG,CAAC,cAAc,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,UAAU,CAAC,CAAA;wBAClE,wBAAwB,GAAG,mBAAY,GAAG,CAAC,cAAc,CAAC,SAAS,CACvE,WAAW,CACZ,CAAE,CAAA;wBACH,eAAe,CAAC,wBAAwB,CAAC,CAAA;;;;wBAEzC,OAAO,CAAC,KAAK,CAAC,4CAA4C,EAAE,GAAC,CAAC,CAAA;;;;;aAEjE,CAAA;QACD,OAAO,EAAE,CAAA;IACX,CAAC,EAAE,CAAC,kBAAkB,EAAE,iBAAiB,CAAC,CAAC,CAAA;IAE3C,mFAAmF;IACnF,IAAM,cAAc,GAAG,IAAA,eAAO,EAC5B,cAAM,OAAA,YAAY,CAAC,OAAO,CAAC,SAAS,EAAE,MAAM,CAAC,EAAvC,CAAuC,EAC7C,CAAC,YAAY,CAAC,CACf,CAAA;IAED,IAAM,SAAS,GAAG,IAAA,eAAO,EACvB,cAAM,OAAA,YAAY,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,EAAjC,CAAiC,EACvC,CAAC,YAAY,CAAC,CACf,CAAA;IAED,OAAO,CACL,8BAAC,6DAA6B,IAC5B,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,MAAM,EACf,KAAK,EAAC,2BAA2B,EACjC,QAAQ,EACN,mKAGG,EAEL,OAAO,EAAE,2BAAmB,cAAc,OAAG,EAC7C,MAAM,EACJ;;YACuD,GAAG;YACxD,qCACE,MAAM,EAAC,QAAQ,EACf,GAAG,EAAC,qBAAqB,EACzB,IAAI,EAAC,gIAAgI;;gBAE9H,IAAI,CACT;YAAC,GAAG;gGAGP,EAEL,KAAK,EAAE,gBAAS,IAAI,8BAAmB,SAAS,gBAAK,IAAI,4CAAuC,EAChG,WAAW,EACT;;YAC4D,GAAG;YAC7D,qCACE,MAAM,EAAC,QAAQ,EACf,GAAG,EAAC,qBAAqB,EACzB,IAAI,EAAC,gIAAgI,cAGnI;YAAC,GAAG;gGAGP,EAEL,UAAU,EAAE,mCAA2B,SAAS,gBAAK,IAAI,wBAAqB,GAC9E,CACH,CAAA;AACH,CAAC;AAED,kBAAe,mBAAmB,CAAA"}
|