synapse-react-client 3.1.40 → 3.1.42

package/dist/index.d.ts

@@ -2,7 +2,7 @@ import * as react_query from 'react-query';
 import { FetchNextPageOptions, InfiniteQueryObserverResult, QueryKey, QueryClientConfig, QueryClient, UseInfiniteQueryOptions, UseMutationOptions, UseQueryOptions, UseQueryResult } from 'react-query';
 import * as React$1 from 'react';
 import React__default, { Dispatch, SetStateAction, RefObject } from 'react';
-import { TwoFactorAuthErrorResponse, EntityHeader, UserGroupHeader, Evaluation, ErrorResponse, TwoFactorAuthOtpType, QueryBundleRequest, FacetColumnRequest, QueryFilter, Table, QueryResultBundle, AsynchronousJobStatus, ColumnModel, ColumnSingleValueFilterOperator, ColumnMultiValueFunction, SelectColumn, Row, EntityChildrenRequest, EntityBundleRequest, ReferenceList, AvailableFilesRequest, AccessApprovalSearchRequest, AccessRequirementSearchRequest, RestrictionInformationRequest, SubmissionSearchRequest, SubmissionInfoPageRequest, FileHandle, BatchFileRequest, FileHandleAssociation, DiscussionThreadOrder, DiscussionFilter, DiscussionReplyOrder, SubscriptionObjectType, SubscriptionQuery, SearchQuery, FavoriteSortBy, FavoriteSortDirection, GetProjectsParameters, PrincipalAliasRequest, TYPE_FILTER, Reference, ColumnType, Entity, SortDirection, ProjectHeader, PROJECT_CONCRETE_TYPE, EntityType, SortBy, Direction, FileEntity, UserProfile, UploadCallbackResp, ObjectType, FileHandleResults, WikiPage, SortItem, DownloadFromTableResult, Query, FacetColumnResultValues, FormData, StatusEnum as StatusEnum$1, SynapseVersion, DownloadFromTableRequest, FileHandleAssociateType, LoginResponse, TwoFactorAuthLoginRequest, TwoFactorAuthStatus, TotpSecret, TotpSecretActivationRequest, TwoFactorAuthRecoveryCodes, UserBundle, UserGroupHeaderResponsePage, UserGroupHeaderResponse, PaginatedResults, EntityChildrenResponse, EntityLookupRequest, EntityId, BatchFileResult, BulkFileDownloadRequest, BulkFileDownloadResponse, AccessControlList, EntityBundle, ChallengePagedResults, ChallengeTeamPagedResults, ChallengeTeam, PaginatedIds, TeamSubmissionEligibility, Challenge, Team, AccessRequirement, TeamMember, JoinTeamSignedToken, ResponseMessage, MembershipInvtnSignedToken, MembershipInvitation, InviteeVerificationSignedToken, TeamMembershipStatus, MembershipRequest, ListWrapper, WikiPageKey, PrincipalAliasResponse, FileUploadComplete, MultipartUploadStatus, MultipartUploadRequest, FileResult, AddBatchOfFilesToDownloadListResponse, DownloadListPackageResponse, AddToDownloadListRequest, AddToDownloadListResponse, EvaluationSubmission, UserEvaluationPermissions, EvaluationRound, EvaluationRoundListRequest, EvaluationRoundListResponse, QueryTableResults, OIDCAuthorizationRequest, OIDCAuthorizationRequestDescription, OAuthConsentGrantedResponse, OAuthClientPublic, OAuthClientList, OAuthClient, OAuthClientVerificationPrecheckResult, OAuthClientIdAndSecret, AuthenticatedOn, AccessCodeResponse, FormGroup, ListRequest, ListResponse, ProjectFilesStatisticsRequest, ProjectFilesStatisticsResponse, RestrictionInformationResponse, AccessRequirementSearchResponse, AccessRequirementStatus, ManagedACTAccessRequirementStatus, AccessApproval, DownloadList, DownloadOrder, TableUpdateTransactionRequest, TransformSqlWithFacetsRequest, SqlTransformResponse, AccessTokenGenerationRequest, AccessTokenGenerationResponse, AccessTokenRecordList, ProjectHeaderList, GetEvaluationParameters, UserEntityPermissions, EntityPath, VersionInfo, SearchResults, AvailableFilesResponse, FilesStatisticsResponse, ActionRequiredRequest, ActionRequiredResponse, DownloadListItem, RemoveBatchOfFilesFromDownloadListResponse, ResearchProject, Request, Renewal, CreateSubmissionRequest, ACTSubmissionStatus, Submission, SubmissionStateChangeRequest, JsonSchemaObjectBinding, ValidationResults, ACCESS_TYPE, HasAccessResponse, EntityJson, NotificationEmail, AliasCheckRequest, AliasCheckResponse, NewUser, AccountSetupInfo, VerificationSubmission, ChangePasswordWithCurrentPassword, ChangePasswordWithToken, EmailValidationSignedToken, Forum, DiscussionReplyBundle, CreateDiscussionReply, UpdateDiscussionReply, MessageURL, DiscussionThreadBundle, CreateDiscussionThread, UpdateThreadTitleRequest, UpdateThreadMessageRequest, DiscussionSearchRequest, DiscussionSearchResponse, AccessApprovalSearchResponse, SubmissionSearchResponse, SubmissionInfoPage, Activity, TrashedEntity, Quiz, QuizResponse, PassingRecord, SubscriptionPagedResults, Subscription, Topic, SubscriberPagedResults, SubscriptionRequest, UploadDestination, DoiAssociation, ActionRequiredList, DockerCommit, Sort, AvailableFilter, EntityJsonValue, ALL_ENTITY_BUNDLE_FIELDS, ChallengeWithProjectHeaderPagedResults } from '@sage-bionetworks/synapse-types';
+import { TwoFactorAuthErrorResponse, EntityHeader, UserGroupHeader, Evaluation, ErrorResponse, TwoFactorAuthOtpType, QueryBundleRequest, FacetColumnRequest, QueryFilter, Table, QueryResultBundle, AsynchronousJobStatus, ColumnModel, ColumnSingleValueFilterOperator, ColumnMultiValueFunction, SelectColumn, Row, EntityChildrenRequest, EntityBundleRequest, ReferenceList, AvailableFilesRequest, AccessApprovalSearchRequest, AccessRequirementSearchRequest, RestrictionInformationRequest, SubmissionSearchRequest, SubmissionInfoPageRequest, FileHandle, BatchFileRequest, FileHandleAssociation, DiscussionThreadOrder, DiscussionFilter, DiscussionReplyOrder, SubscriptionObjectType, SubscriptionQuery, SearchQuery, FavoriteSortBy, FavoriteSortDirection, GetProjectsParameters, PrincipalAliasRequest, TYPE_FILTER, Reference, ColumnType, Entity, SortDirection, ProjectHeader, PROJECT_CONCRETE_TYPE, EntityType, SortBy, Direction, FileEntity, UserProfile, UploadCallbackResp, ObjectType, FileHandleResults, WikiPage, SortItem, DownloadFromTableResult, Query, FacetColumnResultValues, FormData, StatusEnum as StatusEnum$1, SynapseVersion, DownloadFromTableRequest, FileHandleAssociateType, LoginResponse, TwoFactorAuthLoginRequest, TwoFactorAuthStatus, TotpSecret, TotpSecretActivationRequest, TwoFactorAuthRecoveryCodes, UserBundle, UserGroupHeaderResponsePage, UserGroupHeaderResponse, PaginatedResults, EntityChildrenResponse, EntityLookupRequest, EntityId, BatchFileResult, BulkFileDownloadRequest, BulkFileDownloadResponse, AccessControlList, EntityBundle, ChallengePagedResults, ChallengeTeamPagedResults, ChallengeTeam, PaginatedIds, TeamSubmissionEligibility, Challenge, Team, AccessRequirement, TeamMember, JoinTeamSignedToken, ResponseMessage, MembershipInvtnSignedToken, MembershipInvitation, InviteeVerificationSignedToken, TeamMembershipStatus, MembershipRequest, ListWrapper, WikiPageKey, PrincipalAliasResponse, FileUploadComplete, MultipartUploadStatus, MultipartUploadRequest, FileResult, AddBatchOfFilesToDownloadListResponse, DownloadListPackageResponse, AddToDownloadListRequest, AddToDownloadListResponse, EvaluationSubmission, UserEvaluationPermissions, EvaluationRound, EvaluationRoundListRequest, EvaluationRoundListResponse, QueryTableResults, OIDCAuthorizationRequest, OIDCAuthorizationRequestDescription, OAuthConsentGrantedResponse, OAuthClientPublic, OAuthClientList, OAuthClient, OAuthClientVerificationPrecheckResult, OAuthClientIdAndSecret, AuthenticatedOn, AccessCodeResponse, FormGroup, ListRequest, ListResponse, ProjectFilesStatisticsRequest, ProjectFilesStatisticsResponse, RestrictionInformationResponse, AccessRequirementSearchResponse, AccessRequirementStatus, ManagedACTAccessRequirementStatus, AccessApproval, DownloadList, DownloadOrder, TableUpdateTransactionRequest, TransformSqlWithFacetsRequest, SqlTransformResponse, AccessTokenGenerationRequest, AccessTokenGenerationResponse, AccessTokenRecordList, ProjectHeaderList, GetEvaluationParameters, UserEntityPermissions, EntityPath, VersionInfo, SearchResults, AvailableFilesResponse, FilesStatisticsResponse, ActionRequiredRequest, ActionRequiredResponse, DownloadListItem, RemoveBatchOfFilesFromDownloadListResponse, ResearchProject, Request, Renewal, CreateSubmissionRequest, ACTSubmissionStatus, Submission, SubmissionStateChangeRequest, JsonSchemaObjectBinding, ValidationResults, ACCESS_TYPE, HasAccessResponse, EntityJson, NotificationEmail, AliasCheckRequest, AliasCheckResponse, NewUser, AccountSetupInfo, VerificationSubmission, ChangePasswordWithCurrentPassword, ChangePasswordWithToken, EmailValidationSignedToken, Forum, DiscussionReplyBundle, CreateDiscussionReply, UpdateDiscussionReply, MessageURL, DiscussionThreadBundle, CreateDiscussionThread, UpdateThreadTitleRequest, UpdateThreadMessageRequest, DiscussionSearchRequest, DiscussionSearchResponse, AccessApprovalSearchResponse, SubmissionSearchResponse, SubmissionInfoPage, Activity, TrashedEntity, Quiz, QuizResponse, PassingRecord, SubscriptionPagedResults, Subscription, Topic, SubscriberPagedResults, SubscriptionRequest, UploadDestination, DoiAssociation, ActionRequiredList, DockerCommit, RestrictableObjectDescriptor, Sort, AvailableFilter, EntityJsonValue, ALL_ENTITY_BUNDLE_FIELDS, ChallengeWithProjectHeaderPagedResults } from '@sage-bionetworks/synapse-types';
 import { PaperProps, PopoverProps, ThemeOptions, AlertProps, PaletteOptions, PaletteColorOptions, SxProps, TooltipProps, DialogProps, DialogContentProps, ButtonProps, BoxProps, FormControlProps, TextFieldProps as TextFieldProps$1 } from '@mui/material';
 import { useHistory } from 'react-router-dom';
 import { SetRequired, PartialDeep } from 'type-fest';
@@ -843,7 +843,7 @@ declare class KeyFactory {
     getApprovedSubmissionInfoQueryKey(request?: SubmissionInfoPageRequest): QueryKey;
     getValidationSchemaQueryKey(schema$id: string): QueryKey;
     getPresignedUrlContentQueryKey(fileHandle: FileHandle, request: BatchFileRequest, maxSizeBytes?: number): QueryKey;
-    getPresignedUrlFromFHAContentQueryKey(fileHandleAssociation: FileHandleAssociation): QueryKey;
+    getPresignedUrlFromFHAContentQueryKey(fileHandleAssociation: FileHandleAssociation, forceAnonymous: boolean): QueryKey;
     getProfileImageQueryKey(userId: string): QueryKey;
     getDefaultUploadDestinationQueryKey(containerEntityId: string): QueryKey;
     getForumModeratorsQueryKey(forumId: string): QueryKey;
@@ -4521,6 +4521,10 @@ declare function getDOIAssociation(accessToken: string | undefined, objectId: st
 declare function getPortalFileHandleServletUrl(fileHandleId: string, associatedObjectId?: string, associatedObjectType?: FileHandleAssociateType): string;
 declare const getEntityDownloadActionsRequired: (entityId: string, accessToken?: string) => Promise<ActionRequiredList>;
 declare const getDockerTag: (entityId: string, accessToken?: string, offset?: string | number, limit?: string | number, sort?: SortBy, sortDirection?: Direction) => Promise<PaginatedResults<DockerCommit>>;
+declare function getSubjects(accessToken: string | undefined, requirementId: string, nextPageToken?: string): Promise<{
+    subjects: RestrictableObjectDescriptor[];
+    nextPageToken?: string | undefined;
+}>;
 
 type SynapseClient_FunctionReturningPaginatedResults<T> = FunctionReturningPaginatedResults<T>;
 type SynapseClient_GeoData = GeoData;
@@ -4680,6 +4684,7 @@ declare const SynapseClient_getRootURL: typeof getRootURL;
 declare const SynapseClient_getSchema: typeof getSchema;
 declare const SynapseClient_getSchemaBinding: typeof getSchemaBinding;
 declare const SynapseClient_getSchemaValidationResults: typeof getSchemaValidationResults;
+declare const SynapseClient_getSubjects: typeof getSubjects;
 declare const SynapseClient_getSubmissionById: typeof getSubmissionById;
 declare const SynapseClient_getSubmissionEligibility: typeof getSubmissionEligibility;
 declare const SynapseClient_getSubmissionTeams: typeof getSubmissionTeams;
@@ -4932,6 +4937,7 @@ declare namespace SynapseClient {
     SynapseClient_getSchema as getSchema,
     SynapseClient_getSchemaBinding as getSchemaBinding,
     SynapseClient_getSchemaValidationResults as getSchemaValidationResults,
+    SynapseClient_getSubjects as getSubjects,
     SynapseClient_getSubmissionById as getSubmissionById,
     SynapseClient_getSubmissionEligibility as getSubmissionEligibility,
     SynapseClient_getSubmissionTeams as getSubmissionTeams,

package/dist/index.js

@@ -26232,6 +26232,7 @@ __export(SynapseClient_exports, {
   getSchema: () => getSchema,
   getSchemaBinding: () => getSchemaBinding,
   getSchemaValidationResults: () => getSchemaValidationResults,
+  getSubjects: () => getSubjects,
   getSubmissionById: () => getSubmissionById,
   getSubmissionEligibility: () => getSubmissionEligibility,
   getSubmissionTeams: () => getSubmissionTeams,
@@ -30808,6 +30809,17 @@ var getDockerTag = (entityId, accessToken, offset = 0, limit = 20, sort = SortBy
     0 /* REPO_ENDPOINT */
   );
 };
+function getSubjects(accessToken, requirementId, nextPageToken) {
+  const params = new URLSearchParams();
+  if (nextPageToken) {
+    params.set("nextPageToken", nextPageToken);
+  }
+  return doGet(
+    `/repo/v1/accessRequirement/${requirementId}/subjects?${params.toString()}`,
+    accessToken,
+    0 /* REPO_ENDPOINT */
+  );
+}
 
 // src/synapse-client/index.ts
 var synapse_client_default = SynapseClient_exports;
@@ -31390,8 +31402,12 @@ var KeyFactory = class {
   getPresignedUrlContentQueryKey(fileHandle, request, maxSizeBytes) {
     return this.getKey("presignedUrlContent", fileHandle, request, maxSizeBytes);
   }
-  getPresignedUrlFromFHAContentQueryKey(fileHandleAssociation) {
-    return this.getKey("presignedUrlContentFromFHA", fileHandleAssociation);
+  getPresignedUrlFromFHAContentQueryKey(fileHandleAssociation, forceAnonymous) {
+    return this.getKey(
+      "presignedUrlContentFromFHA",
+      fileHandleAssociation,
+      forceAnonymous
+    );
   }
   getProfileImageQueryKey(userId) {
     return this.getKey("profileImageData", userId);
@@ -33079,7 +33095,7 @@ function useGetPresignedUrlContent(fileHandle, request, maxFileSizeBytes, option
     }
   );
 }
-function useGetPresignedUrlContentFromFHA(fileHandleAssociation, options) {
+function useGetPresignedUrlContentFromFHA(fileHandleAssociation, forceAnonymous = false, options) {
   const { accessToken, keyFactory } = useSynapseContext();
   const queryFn = async () => {
     const batchFileResult = await synapse_client_default.getFiles(
@@ -33089,7 +33105,7 @@ function useGetPresignedUrlContentFromFHA(fileHandleAssociation, options) {
         includePreSignedURLs: true,
         includePreviewPreSignedURLs: false
       },
-      accessToken
+      forceAnonymous ? void 0 : accessToken
     );
     const data = await synapse_client_default.getFileHandleContent(
       batchFileResult.requestedFiles[0].fileHandle,
@@ -33098,7 +33114,10 @@ function useGetPresignedUrlContentFromFHA(fileHandleAssociation, options) {
     return data;
   };
   return (0, import_react_query7.useQuery)(
-    keyFactory.getPresignedUrlFromFHAContentQueryKey(fileHandleAssociation),
+    keyFactory.getPresignedUrlFromFHAContentQueryKey(
+      fileHandleAssociation,
+      forceAnonymous
+    ),
     queryFn,
     {
       staleTime: Infinity,
@@ -34436,7 +34455,17 @@ function useSubmitDataAccessRequest(options) {
   const queryClient = (0, import_react_query11.useQueryClient)();
   const { accessToken, keyFactory } = useSynapseContext();
   return (0, import_react_query11.useMutation)(
-    ({ request }) => synapse_client_default.submitDataAccessRequest(request, accessToken),
+    async ({ request, accessRequirementId }) => {
+      if (request.subjectId == null || request.subjectType == null) {
+        const { subjects } = await synapse_client_default.getSubjects(
+          accessToken,
+          accessRequirementId
+        );
+        request.subjectId = subjects[0].id;
+        request.subjectType = subjects[0].type;
+      }
+      return synapse_client_default.submitDataAccessRequest(request, accessToken);
+    },
     {
       ...options,
       onSuccess: async (data, variables, ctx) => {
@@ -39379,24 +39408,13 @@ function ManagedACTAccessRequirementFormWikiWrapper(props) {
 // src/components/AccessRequirementList/ManagedACTAccessRequirementRequestFlow/ResearchProjectForm.tsx
 function ResearchProjectForm(props) {
   const { onSave, managedACTAccessRequirement, onHide } = props;
-  const [projectLead, setProjectLead] = (0, import_react130.useState)("");
-  const [institution, setInstitution] = (0, import_react130.useState)("");
-  const [intendedDataUseStatement, setIntendedDataUseStatement] = (0, import_react130.useState)(managedACTAccessRequirement.isIDURequired ? "" : void 0);
+  const [projectLead, setProjectLead] = (0, import_react130.useState)(void 0);
+  const [institution, setInstitution] = (0, import_react130.useState)(void 0);
+  const [intendedDataUseStatement, setIntendedDataUseStatement] = (0, import_react130.useState)(void 0);
   const [alert2, setAlert] = (0, import_react130.useState)();
   const { data: existingResearchProject, isLoading: isLoadingInitialData } = useGetResearchProject(String(managedACTAccessRequirement.id), {
     // Infinite staleTime ensures this won't be refetched unless explicitly invalidated by the mutation
     staleTime: Infinity,
-    onSuccess: (data) => {
-      if (data?.projectLead) {
-        setProjectLead(data?.projectLead);
-      }
-      if (data?.institution) {
-        setInstitution(data?.institution);
-      }
-      if (data?.intendedDataUseStatement) {
-        setIntendedDataUseStatement(data?.intendedDataUseStatement);
-      }
-    },
     onError: (e) => {
       console.log(
         "RequestDataAccessStep1: Error getting research project data: ",
@@ -39404,6 +39422,26 @@ function ResearchProjectForm(props) {
       );
     }
   });
+  (0, import_react130.useEffect)(() => {
+    if (projectLead == void 0 && existingResearchProject?.projectLead) {
+      setProjectLead(existingResearchProject?.projectLead);
+    }
+    if (institution == void 0 && existingResearchProject?.institution) {
+      setInstitution(existingResearchProject?.institution);
+    }
+    if (intendedDataUseStatement == void 0 && existingResearchProject?.intendedDataUseStatement) {
+      setIntendedDataUseStatement(
+        existingResearchProject?.intendedDataUseStatement
+      );
+    }
+  }, [
+    existingResearchProject?.institution,
+    existingResearchProject?.intendedDataUseStatement,
+    existingResearchProject?.projectLead,
+    institution,
+    intendedDataUseStatement,
+    projectLead
+  ]);
   const { mutate, isLoading: isLoadingUpdate } = useUpdateResearchProject({
     onSuccess: (data) => {
       if (onSave) {
@@ -39714,7 +39752,8 @@ var UserSearchBoxV2 = (props) => {
           input: {
             gridArea: "1 / 2 / 4 / 4 !important"
           }
-        })
+        }),
+        menu: (base) => ({ ...base, zIndex: 2 })
       },
       components: customSelectComponents,
       onChange: (option) => {
@@ -43779,7 +43818,9 @@ function useGetActionsRequiredForTableQuery(queryBundleRequest, columnModels, fi
   const queryRequestCopy = (0, import_react217.useMemo)(() => {
     const request = (0, import_lodash_es13.cloneDeep)(queryBundleRequest);
     const fileColumnId = fileColumnModelId || getFileColumnModelId(columnModels);
-    request.query.selectFileColumn = Number(fileColumnId);
+    if (fileColumnId) {
+      request.query.selectFileColumn = Number(fileColumnId);
+    }
     request.partMask = SynapseConstants_exports.BUNDLE_MASK_ACTIONS_REQUIRED;
     return request;
   }, [columnModels, fileColumnModelId, queryBundleRequest]);
@@ -65662,11 +65703,15 @@ var import_lodash_es37 = require("lodash-es");
 var TermsAndConditionsItem = (props) => {
   const { id, item, enabled, checked, onChange, termsAndConditionsTableID } = props;
   const { iconFileHandleId, label, description } = item;
-  const { data: iconFileContent } = useGetPresignedUrlContentFromFHA({
-    associateObjectId: termsAndConditionsTableID,
-    associateObjectType: FileHandleAssociateType.TableEntity,
-    fileHandleId: iconFileHandleId
-  });
+  const { data: iconFileContent } = useGetPresignedUrlContentFromFHA(
+    {
+      associateObjectId: termsAndConditionsTableID,
+      associateObjectType: FileHandleAssociateType.TableEntity,
+      fileHandleId: iconFileHandleId
+    },
+    true
+    // force this query to be run as the anonymous user (without an access token)
+  );
   const [showDesc, setShowDes] = (0, import_react449.useState)(false);
   const [isChecked, setIsChecked] = (0, import_react449.useState)(false);
   let mounted = true;