synapse-react-client 3.1.30 → 3.1.31

package/dist/utils/hooks/SynapseAPI/entity/useExportToCavatica.js

@@ -36,10 +36,15 @@ function useExportToCavatica(queryBundleRequest, selectColumns) {
                     result = _a.sent();
                     return [4 /*yield*/, __1.SynapseClient.getFileHandleByIdURL(result.resultsFileHandleId, accessToken)
                         // Send this presigned URL to the Cavatica landing page where it can be processed
+                        // NOTE: This dev environment redirect link only works if you are in the Seven Bridges VPN, so this cannot be tested by Sage
                     ];
                 case 2:
                     presignedURL = _a.sent();
-                    cavaticaURL = "https://cavatica.sbgenomics.com/import-redirect/drs/csv/?URL=".concat(encodeURIComponent(presignedURL));
+                    cavaticaURL = "https://synapse-vayu.sbgenomics.com/import-redirect/drs/csv/?URL=".concat(encodeURIComponent(presignedURL));
+                    // TODO: change to production redirect link after the changes have been validated and they have released to prod
+                    // const cavaticaURL = `https://cavatica.sbgenomics.com/import-redirect/drs/csv/?URL=${encodeURIComponent(
+                    //   presignedURL,
+                    // )}`
                     window.open(cavaticaURL, '_blank');
                     return [3 /*break*/, 4];
                 case 3:

package/dist/utils/hooks/SynapseAPI/entity/useExportToCavatica.js.map

@@ -1 +1 @@
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+{"version":3,"file":"useExportToCavatica.js","sourceRoot":"","sources":["../../../../../src/lib/utils/hooks/SynapseAPI/entity/useExportToCavatica.ts"],"names":[],"mappings":";;;;AAAA,8BAAwC;AACxC,oEAAkE;AAClE,gEAA+E;AAC/E,0DAA2D;AAO3D,SAAgB,mBAAmB,CACjC,kBAAsC,EACtC,aAA8B;IAFhC,iBAiDC;IA7CS,IAAA,WAAW,GAAK,IAAA,kCAAiB,GAAE,YAAxB,CAAwB;IAC3C,IAAM,SAAS,GAAG,GAAG,CAAA;IACrB,IAAM,WAAW,GAAG,IAAI,CAAA;IACxB,IAAM,yBAAyB,GAAG,KAAK,CAAA;IACvC,IAAM,WAAW,GAAG,kBAAkB,CAAC,KAAK,CAAC,GAAG,CAAA;IAChD,OAAO;;;;;;oBAGG,iBAAiB,GAAG,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,GAAG,CAAC,UAAA,GAAG,IAAI,OAAA,GAAG,CAAC,IAAI,EAAR,CAAQ,EAAE,IAAI,CAAC,GAAG,CAAC,CAAA;oBACjE,GAAG,GAAG,yHAAkH,iBAAiB,mBAAS,WAAW,CAAC,KAAK,CACvK,WAAW,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,GAAG,CAAC,CAC9D,CAAE,CAAA;oBACG,wBAAwB,GAA6B;wBACzD,GAAG,KAAA;wBACH,QAAQ,EAAE,IAAA,4CAA6B,EAAC,GAAG,CAAC;wBAC5C,cAAc,EAAE,kBAAkB,CAAC,KAAK,CAAC,cAAc;wBACvD,YAAY,EACV,+DAA+D;wBACjE,WAAW,aAAA;wBACX,yBAAyB,2BAAA;wBACzB,kBAAkB,EAAE,EAAE,SAAS,WAAA,EAAE;wBACjC,iBAAiB,EAAE,kBAAkB,CAAC,KAAK,CAAC,iBAAiB;qBAC9D,CAAA;oBACc,qBAAM,iBAAa,CAAC,2BAA2B,CAC5D,wBAAwB,EACxB,WAAW,CACZ,EAAA;;oBAHK,MAAM,GAAG,SAGd;oBACoB,qBAAM,iBAAa,CAAC,oBAAoB,CAC3D,MAAM,CAAC,mBAAmB,EAC1B,WAAW,CACZ;wBACD,iFAAiF;wBACjF,4HAA4H;sBAF3H;;oBAHK,YAAY,GAAG,SAGpB;oBAGK,WAAW,GAAG,2EAAoE,kBAAkB,CACxG,YAAY,CACb,CAAE,CAAA;oBACH,gHAAgH;oBAChH,0GAA0G;oBAC1G,kBAAkB;oBAClB,MAAM;oBACN,MAAM,CAAC,IAAI,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAA;;;;oBAElC,IAAA,2BAAY,EAAC,MAAI,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAA;;;;;SAEtC,CAAA;AACH,CAAC;AAjDD,kDAiDC"}

package/dist/utils/hooks/SynapseAPI/oauth/useOAuthClient.js

@@ -5,9 +5,6 @@ var tslib_1 = require("tslib");
 var react_query_1 = require("react-query");
 var __1 = require("../../..");
 var SynapseContext_1 = require("../../../SynapseContext");
-var oAuthQueryKeys = {
-    all: function (accessToken) { return ['oAuthClient', accessToken]; },
-};
 function useGetOAuthClientInfinite(options) {
     var _this = this;
     var _a = (0, SynapseContext_1.useSynapseContext)(), accessToken = _a.accessToken, keyFactory = _a.keyFactory;
@@ -68,13 +65,13 @@ exports.useUpdateOAuthClient = useUpdateOAuthClient;
 function useCreateOAuthClient(options) {
     var _this = this;
     var queryClient = (0, react_query_1.useQueryClient)();
-    var accessToken = (0, SynapseContext_1.useSynapseContext)().accessToken;
+    var _a = (0, SynapseContext_1.useSynapseContext)(), accessToken = _a.accessToken, keyFactory = _a.keyFactory;
     return (0, react_query_1.useMutation)(function (client) {
         return __1.SynapseClient.createOAuthClient(client, accessToken);
     }, tslib_1.__assign(tslib_1.__assign({}, options), { onSuccess: function (updatedClient, client, ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
-                    case 0: return [4 /*yield*/, queryClient.invalidateQueries(oAuthQueryKeys.all(accessToken))];
+                    case 0: return [4 /*yield*/, queryClient.invalidateQueries(keyFactory.getMyOAuthClientsQueryKey())];
                     case 1:
                         _a.sent();
                         if (!(options === null || options === void 0 ? void 0 : options.onSuccess)) return [3 /*break*/, 3];

package/dist/utils/hooks/SynapseAPI/oauth/useOAuthClient.js.map

@@ -1 +1 @@
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+{"version":3,"file":"useOAuthClient.js","sourceRoot":"","sources":["../../../../../src/lib/utils/hooks/SynapseAPI/oauth/useOAuthClient.ts"],"names":[],"mappings":";;;;AAAA,2CAMoB;AACpB,8BAAwC;AAExC,0DAA2D;AAG3D,SAAgB,yBAAyB,CACvC,OAAsE;IADxE,iBAaC;IAVO,IAAA,KAA8B,IAAA,kCAAiB,GAAE,EAA/C,WAAW,iBAAA,EAAE,UAAU,gBAAwB,CAAA;IACvD,OAAO,IAAA,8BAAgB,EACrB,UAAU,CAAC,yBAAyB,EAAE,EACtC,UAAM,OAAO;;oBACX,qBAAM,iBAAa,CAAC,SAAS,CAAC,WAAY,EAAE,OAAO,CAAC,SAAS,CAAC,EAAA;oBAA9D,sBAAA,SAA8D,EAAA;;aAAA,wCAE3D,OAAO,KACV,gBAAgB,EAAE,UAAA,IAAI,IAAI,OAAA,IAAI,CAAC,aAAa,EAAlB,CAAkB,IAE/C,CAAA;AACH,CAAC;AAbD,8DAaC;AAED,SAAgB,oBAAoB,CAClC,OAA8D;IADhE,iBAqBC;IAlBC,IAAM,WAAW,GAAG,IAAA,4BAAc,GAAE,CAAA;IAC9B,IAAA,KAA8B,IAAA,kCAAiB,GAAE,EAA/C,WAAW,iBAAA,EAAE,UAAU,gBAAwB,CAAA;IAEvD,OAAO,IAAA,yBAAW,EAChB,UAAC,QAAgB;QACf,OAAA,iBAAa,CAAC,iBAAiB,CAAC,QAAQ,EAAE,WAAY,CAAC;IAAvD,CAAuD,wCAEpD,OAAO,KACV,SAAS,EAAE,UAAO,aAAa,EAAE,QAAQ,EAAE,GAAG;;;4BAC5C,qBAAM,WAAW,CAAC,iBAAiB,CACjC,UAAU,CAAC,yBAAyB,EAAE,CACvC,EAAA;;wBAFD,SAEC,CAAA;6BACG,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,SAAS,CAAA,EAAlB,wBAAkB;wBACpB,qBAAM,OAAO,CAAC,SAAS,CAAC,aAAa,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAA;;wBAArD,SAAqD,CAAA;;;;;aAExD,IAEJ,CAAA;AACH,CAAC;AArBD,oDAqBC;AAED,SAAgB,oBAAoB,CAClC,OAA0E;IAD5E,iBAqBC;IAlBC,IAAM,WAAW,GAAG,IAAA,4BAAc,GAAE,CAAA;IAC9B,IAAA,KAA8B,IAAA,kCAAiB,GAAE,EAA/C,WAAW,iBAAA,EAAE,UAAU,gBAAwB,CAAA;IAEvD,OAAO,IAAA,yBAAW,EAChB,UAAC,MAAmB;QAClB,OAAA,iBAAa,CAAC,iBAAiB,CAAC,MAAM,EAAE,WAAY,CAAC;IAArD,CAAqD,wCAElD,OAAO,KACV,SAAS,EAAE,UAAO,aAAa,EAAE,MAAM,EAAE,GAAG;;;4BAC1C,qBAAM,WAAW,CAAC,iBAAiB,CACjC,UAAU,CAAC,yBAAyB,EAAE,CACvC,EAAA;;wBAFD,SAEC,CAAA;6BACG,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,SAAS,CAAA,EAAlB,wBAAkB;wBACpB,qBAAM,OAAO,CAAC,SAAS,CAAC,aAAa,EAAE,MAAM,EAAE,GAAG,CAAC,EAAA;;wBAAnD,SAAmD,CAAA;;;;;aAEtD,IAEJ,CAAA;AACH,CAAC;AArBD,oDAqBC;AAED,SAAgB,oBAAoB,CAClC,OAA0E;IAD5E,iBAqBC;IAlBC,IAAM,WAAW,GAAG,IAAA,4BAAc,GAAE,CAAA;IAC9B,IAAA,KAA8B,IAAA,kCAAiB,GAAE,EAA/C,WAAW,iBAAA,EAAE,UAAU,gBAAwB,CAAA;IAEvD,OAAO,IAAA,yBAAW,EAChB,UAAC,MAAmB;QAClB,OAAA,iBAAa,CAAC,iBAAiB,CAAC,MAAM,EAAE,WAAY,CAAC;IAArD,CAAqD,wCAElD,OAAO,KACV,SAAS,EAAE,UAAO,aAAa,EAAE,MAAM,EAAE,GAAG;;;4BAC1C,qBAAM,WAAW,CAAC,iBAAiB,CACjC,UAAU,CAAC,yBAAyB,EAAE,CACvC,EAAA;;wBAFD,SAEC,CAAA;6BACG,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,SAAS,CAAA,EAAlB,wBAAkB;wBACpB,qBAAM,OAAO,CAAC,SAAS,CAAC,aAAa,EAAE,MAAM,EAAE,GAAG,CAAC,EAAA;;wBAAnD,SAAmD,CAAA;;;;;aAEtD,IAEJ,CAAA;AACH,CAAC;AArBD,oDAqBC"}

package/dist/utils/theme/DefaultTheme.js

@@ -5,6 +5,7 @@ var Typography_1 = require("./typography/Typography");
 var Palettes_1 = tslib_1.__importDefault(require("./palette/Palettes"));
 var material_1 = require("@mui/material");
 var Link_1 = tslib_1.__importDefault(require("./typography/Link"));
+var DIALOG_INNER_PADDING = '2px';
 var defaultMuiThemeOptions = {
     typography: Typography_1.typographyOptions,
     palette: Palettes_1.default,
@@ -34,8 +35,8 @@ var defaultMuiThemeOptions = {
                 root: {
                     fontWeight: 900,
                     padding: '6px 12px',
-                    borderRadius: '0px',
-                    textTransform: 'none',
+                    borderRadius: '3px',
+                    textTransform: 'capitalize',
                     '&:hover': {
                         transition: '0.2s',
                     },
@@ -89,13 +90,20 @@ var defaultMuiThemeOptions = {
             },
             styleOverrides: {
                 root: function (_a) {
-                    var theme = _a.theme;
+                    var ownerState = _a.ownerState, theme = _a.theme;
                     return ({
                         color: theme.palette.text.secondary,
-                        paddingTop: theme.spacing(3),
-                        paddingBottom: theme.spacing(3),
-                        paddingLeft: '0px',
-                        paddingRight: '0px',
+                        paddingTop: ownerState.dividers ? theme.spacing(3) : 0,
+                        paddingBottom: ownerState.dividers ? theme.spacing(3) : 0,
+                        // Hack - set add a small padding and offset with a negative margin so box-shadow effects on full width elements (like input fields) are shown
+                        paddingLeft: DIALOG_INNER_PADDING,
+                        paddingRight: DIALOG_INNER_PADDING,
+                        marginLeft: "-".concat(DIALOG_INNER_PADDING),
+                        marginRight: "-".concat(DIALOG_INNER_PADDING),
+                        // Add a filter on the `dividers` borders so that the borders are transparent on the edges based on the DIALOG_INNER_PADDING length
+                        borderImage: ownerState.dividers
+                            ? "linear-gradient(to right, transparent 0px, transparent ".concat(DIALOG_INNER_PADDING, ", ").concat(theme.palette.grey[400], " ").concat(DIALOG_INNER_PADDING, ", ").concat(theme.palette.grey[400], " calc(100% - ").concat(DIALOG_INNER_PADDING, "), transparent calc(100% - ").concat(DIALOG_INNER_PADDING, ")) 1")
+                            : undefined,
                     });
                 },
             },
@@ -111,12 +119,35 @@ var defaultMuiThemeOptions = {
                         '& .MuiButton-root': {
                             height: '36px',
                             padding: '0px 16px',
-                            borderRadius: 0,
                         },
                     });
                 },
             },
         },
+        MuiInputBase: {
+            styleOverrides: {
+                root: function (_a) {
+                    var theme = _a.theme;
+                    return ({
+                        borderRadius: '3px',
+                        fontSize: '14px',
+                        position: 'relative',
+                        backgroundColor: theme.palette.grey[200],
+                        border: 'none',
+                        '&.Mui-focused': {
+                            boxShadow: "".concat((0, material_1.alpha)(theme.palette.primary.main, 0.25), " 0 0 0 0.1rem"),
+                            borderColor: theme.palette.primary.main,
+                        },
+                    });
+                },
+                input: function (_a) {
+                    var theme = _a.theme;
+                    return ({
+                        padding: '14px 12px',
+                    });
+                },
+            },
+        },
         MuiMenuItem: {
             styleOverrides: {
                 root: {

package/dist/utils/theme/DefaultTheme.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "synapse-react-client",
-  "version": "3.1.30",
+  "version": "3.1.31",
   "private": false,
   "main": "dist/index.js",
   "types": "./dist/index.d.ts",
@@ -69,13 +69,13 @@
     "react-compound-slider": "^2.5.0",
     "react-datetime": "^3.0.4",
     "react-error-boundary": "^3.1.1",
-    "react-flow-renderer": "^10.3.11",
+    "reactflow": "^11.7.0",
     "react-hot-toast": "^2.1.0",
     "react-intersection-observer": "^9.4.0",
     "react-mailchimp-subscribe": "^2.1.0",
     "react-measure": "^2.1.2",
-    "react-plotly.js": "^2.5.1",
-    "react-plotlyjs-ts": "^2.2.1",
+    "react-plotly.js": "^2.6.0",
+    "react-plotlyjs-ts": "^2.2.2",
     "react-popper": "^2.2.5",
     "react-query": "3.39.1",
     "react-reflex": "^4.0.0",
@@ -89,7 +89,7 @@
     "react-vtree": "3.0.0-beta.3",
     "react-window": "^1.8.6",
     "regenerator-runtime": "^0.13.2",
-    "rss-parser": "^3.7.2",
+    "rss-parser": "^3.13.0",
     "sass": "^1.30.0",
     "shortid": "^2.2.16",
     "spark-md5": "^3.0.0",
@@ -121,13 +121,15 @@
     "@googlemaps/jest-mocks": "^2.7.5",
     "@juggle/resize-observer": "^3.3.1",
     "@rollup/plugin-inject": "^4.0.4",
-    "@storybook/addon-actions": "^7.0.0-beta.38",
-    "@storybook/addon-essentials": "^7.0.0-beta.38",
-    "@storybook/addon-interactions": "^7.0.0-beta.38",
-    "@storybook/addon-links": "^7.0.0-beta.38",
-    "@storybook/react": "^7.0.0-beta.38",
-    "@storybook/react-vite": "^7.0.0-beta.38",
-    "@storybook/testing-library": "^0.0.14-next.1",
+    "@storybook/addon-actions": "^7.0.6",
+    "@storybook/addon-essentials": "^7.0.6",
+    "@storybook/addon-interactions": "^7.0.6",
+    "@storybook/addon-links": "^7.0.6",
+    "@storybook/manager-api": "^7.0.6",
+    "@storybook/react": "^7.0.6",
+    "@storybook/react-vite": "^7.0.6",
+    "@storybook/testing-library": "^0.1.0",
+    "@storybook/theming": "^7.0.6",
     "@testing-library/dom": "^8.17.1",
     "@testing-library/jest-dom": "^5.16.5",
     "@testing-library/react": "^13.3.0",
@@ -153,7 +155,7 @@
     "@types/react-dom": "^18.0.6",
     "@types/react-mailchimp-subscribe": "^2.0.2",
     "@types/react-measure": "^2.0.4",
-    "@types/react-plotly.js": "^2.2.4",
+    "@types/react-plotly.js": "^2.6.0",
     "@types/react-router-dom": "^5.3.3",
     "@types/react-transition-group": "^2.0.16",
     "@types/react-virtualized-auto-sizer": "^1.0.1",
@@ -186,7 +188,7 @@
     "jsdom": "^21.1.0",
     "memfs": "^3.4.7",
     "msw": "^0.49.3",
-    "msw-storybook-addon": "^1.7.0",
+    "msw-storybook-addon": "^1.8.0",
     "path-browserify": "^1.0.1",
     "postcss-normalize": "^10.0.1",
     "prettier": "^2.6.2",
@@ -196,7 +198,7 @@
     "react-select-event": "^5.5.1",
     "react-test-renderer": "^18.2.0",
     "rollup-plugin-polyfill-node": "^0.10.2",
-    "storybook": "^7.0.0-beta.38",
+    "storybook": "^7.0.6",
     "stream-browserify": "^3.0.0",
     "stream-http": "^3.2.0",
     "timers-browserify": "^2.0.12",