synapse-react-client 3.0.0 → 3.0.3

package/dist/containers/table/TopLevelControls.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TopLevelControls.js","sourceRoot":"","sources":["../../../src/lib/containers/table/TopLevelControls.tsx"],"names":[],"mappings":";;;AACA,uCAAqC;AACrC,6DAAyB;AACzB,iEAAyD;AAEzD,8FAA0D;AAC1D,0GAAsE;AACtE,0EAAsC;AACtC,0EAA2E;AAC3E,gDAIwB;AACxB,gDAAiD;AACjD,oEAAkE;AAClE,yCAA6C;AAC7C,+DAA6D;AAgC7D,IAAM,QAAQ,GAAc;IAC1B;QACE,IAAI,EAAE,QAAQ;QACd,GAAG,EAAE,eAAe;QACpB,WAAW,EAAE,wBAAwB;KACtC;IACD;QACE,IAAI,EAAE,OAAO;QACb,GAAG,EAAE,wBAAwB;QAC7B,WAAW,EAAE,4BAA4B;KAC1C;IACD;QACE,IAAI,EAAE,QAAQ;QACd,GAAG,EAAE,iBAAiB;QACtB,WAAW,EAAE,qBAAqB;KACnC;IACD;QACE,IAAI,EAAE,UAAU;QAChB,GAAG,EAAE,0BAA0B;QAC/B,WAAW,EAAE,2BAA2B;KACzC;IACD;QACE,IAAI,EAAE,6BAAU;QAChB,GAAG,EAAE,eAAe;QACpB,WAAW,EAAE,uCAAuC;KACrD;CACF,CAAA;AAED,IAAM,gBAAgB,GAAG,UAAC,KAA4B;IAElD,IAAA,IAAI,GAQF,KAAK,KARH,EACJ,KAOE,KAAK,oBAPoB,EAA3B,mBAAmB,mBAAG,KAAK,KAAA,EAC3B,KAME,KAAK,aANa,EAApB,YAAY,mBAAG,KAAK,KAAA,EACpB,KAKE,KAAK,0BAL0B,EAAjC,yBAAyB,mBAAG,KAAK,KAAA,EACjC,KAIE,KAAK,uBAJuB,EAA9B,sBAAsB,mBAAG,KAAK,KAAA,EAC9B,KAGE,KAAK,eAHe,EAAtB,cAAc,mBAAG,KAAK,KAAA,EACtB,KAEE,KAAK,qBAFoB,EAA3B,oBAAoB,mBAAG,IAAI,KAAA,EAC3B,cAAc,GACZ,KAAK,eADO,CACP;IAEH,IAAA,KAMF,IAAA,8BAAe,GAAE,EALnB,IAAI,UAAA,EACJ,MAAM,YAAA,EACN,mBAAmB,yBAAA,EACnB,mBAAmB,yBAAA,EACnB,mBAAmB,yBACA,CAAA;IAEf,IAAA,KAOF,IAAA,wDAA4B,GAAE,EANhC,qBAAqB,2BAAA,EACrB,wBAAwB,8BAAA,EACxB,oBAAoB,0BAAA,EACpB,kBAAkB,wBAAA,EAClB,YAAY,kBAAA,EACZ,uBAAuB,6BACS,CAAA;IAElC,IAAM,eAAe,GAAG,UAAC,OAAoC;;QAC3D,IAAM,4BAA4B;YAChC,GAAC,OAAO,IAAG,CAAC,qBAAqB,CAAC,OAAO,CAAC;eAC3C,CAAA;QACD,IAAI,OAAO,KAAK,eAAe,EAAE;YAC/B,4BAA4B,CAAC,wBAAwB,GAAG,KAAK,CAAA;SAC9D;QACD,IAAI,OAAO,KAAK,0BAA0B,EAAE;YAC1C,4BAA4B,CAAC,aAAa,GAAG,KAAK,CAAA;SACnD;QACD,wBAAwB,CAAC,UAAA,KAAK,IAAI,OAAA,iDAC7B,KAAK,GACL,4BAA4B,EAC/B,EAHgC,CAGhC,CAAC,CAAA;IACL,CAAC,CAAA;IAED,IAAM,OAAO,GAAG;QACd,mBAAmB,CAAC,mBAAmB,EAAE,CAAC,CAAA;IAC5C,CAAC,CAAA;IACD;;;;;OAKG;IACH,IAAM,qBAAqB,GAAG,UAAC,UAAkB;QAC/C,IAAI,wBAAwB,GAAG,IAAA,qBAAS,EAAC,oBAAoB,CAAC,CAAA;QAC9D,IAAI,wBAAwB,CAAC,QAAQ,CAAC,UAAU,CAAC,EAAE;YACjD,wBAAwB,GAAG,wBAAwB,CAAC,MAAM,CACxD,UAAA,EAAE,IAAI,OAAA,EAAE,KAAK,UAAU,EAAjB,CAAiB,CACxB,CAAA;SACF;aAAM;YACL,wBAAwB,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;SAC1C;QACD,uBAAuB,CAAC,wBAAwB,CAAC,CAAA;IACnD,CAAC,CAAA;IACD,IAAM,eAAe,GAAG,qBAAqB,aAArB,qBAAqB,uBAArB,qBAAqB,CAAE,eAAe,CAAA;IAE9D,OAAO,CACL,uCACE,SAAS,EAAE,uBACT,eAAe;YACb,CAAC,CAAC,yCAA0B;YAC5B,CAAC,CAAC,0CAA2B,CAC/B,iBACU,kBAAkB;QAE9B;YACE,uCAAK,SAAS,EAAC,8BAA8B,IAC1C,IAAI,IAAI,CACP;gBACE,8BAAC,oBAAU,IAAC,OAAO,EAAC,cAAc,EAAC,IAAI,EAAC,SAAS;oBAC9C,IAAI;oBAAE,GAAG;oBACT,CAAC,cAAc,IAAI,CAClB,8BAAC,oBAAU,IACT,GAAG,EAAE,mBAAmB,EAAE,CAAC,KAAK,CAAC,GAAG,EACpC,MAAM,EAAE,IAAI,GACZ,CACH,CACU;gBACZ,CAAC,cAAc,IAAI,MAAM,IAAI,CAC5B,8BAAC,oCAA0B,IAAC,MAAM,EAAE,MAAM,GAAI,CAC/C,CACA,CACJ,CACG;YACN,uCAAK,SAAS,EAAC,2BAA2B;gBACvC,cAAc;oBACb,cAAc,CAAC,GAAG,CAAC,UAAA,aAAa;;wBAC9B,OAAO,CACL,0CACE,GAAG,EAAE,aAAa,CAAC,UAAU,EAC7B,SAAS,EAAE,qEACT,MAAA,aAAa,CAAC,UAAU,mCAAI,EAAE,CAC9B,EACF,KAAK,EAAE,EAAE,WAAW,EAAE,KAAK,EAAE,EAC7B,IAAI,EAAC,QAAQ,EACb,OAAO,EAAE;gCACP,OAAA,aAAa,CAAC,OAAO,CAAC,EAAE,IAAI,MAAA,EAAE,kBAAkB,oBAAA,EAAE,OAAO,SAAA,EAAE,CAAC;4BAA5D,CAA4D;4BAG7D,aAAa,CAAC,IAAI;;4BAClB,aAAa,CAAC,UAAU,CAClB,CACV,CAAA;oBACH,CAAC,CAAC;gBACH,QAAQ,CAAC,GAAG,CAAC,UAAA,OAAO;oBACX,IAAA,GAAG,GAAwB,OAAO,IAA/B,EAAE,IAAI,GAAkB,OAAO,KAAzB,EAAE,WAAW,GAAK,OAAO,YAAZ,CAAY;oBAC1C,IACE,CAAC,GAAG,KAAK,0BAA0B,IAAI,YAAY,CAAC;wBACpD,CAAC,GAAG,KAAK,wBAAwB,IAAI,yBAAyB,CAAC;wBAC/D,CAAC,GAAG,KAAK,iBAAiB,IAAI,sBAAsB,CAAC;wBACrD,CAAC,GAAG,KAAK,eAAe,IAAI,oBAAoB,CAAC,EACjD;wBACA,8DAA8D;wBAC9D,OAAO,6DAAK,CAAA;qBACb;yBAAM,IAAI,GAAG,KAAK,0BAA0B,EAAE;wBAC7C,OAAO,CACL,8BAAC,2BAAe,IACd,GAAG,EAAE,GAAG,EACR,SAAS,EAAE,IAAI,EACf,eAAe,EAAE,cAAM,OAAA,eAAe,CAAC,GAAG,CAAC,EAApB,CAAoB,EAC3C,iBAAiB,EAAE,IAAI,EACvB,kBAAkB,EAAE,mBAAmB,EAAE,GACzC,CACH,CAAA;qBACF;oBACD,OAAO,CACL,8BAAC,uCAAkB,IACjB,YAAY,EAAE,GAAG,EACjB,WAAW,EAAE,WAAW,EACxB,GAAG,EAAE,GAAG,EACR,UAAU,EAAE,cAAM,OAAA,eAAe,CAAC,GAAG,CAAC,EAApB,CAAoB,EACtC,SAAS,EAAE,IAAI,EACf,IAAI,EAAE,IAAI,GACV,CACH,CAAA;gBACH,CAAC,CAAC;gBACD,mBAAmB,IAAI,CACtB,8BAAC,iCAAe,IACd,OAAO,EAAE,IAAI,aAAJ,IAAI,uBAAJ,IAAI,CAAE,aAAa,EAC5B,gBAAgB,EAAE,oBAAoB,EACtC,qBAAqB,EAAE,qBAAqB,EAC5C,SAAS,EAAE,IAAI,EACf,YAAY,EAAE,YAAY,GAC1B,CACH,CACG,CACH,CACD,CACP,CAAA;AACH,CAAC,CAAA;AAED,kBAAe,gBAAgB,CAAA"}

package/dist/containers/table/table-top/ProgrammaticTableDownload.js

@@ -38,7 +38,7 @@ function ProgrammaticOptions(_a) {
                         res = _b.sent();
                         indexOfFrom = res.transformedSql.toUpperCase().indexOf('FROM SYN');
                         selectStarTransformedSql = "SELECT * " + res.transformedSql.substring(indexOfFrom);
-                        setGeneratedSql(selectStarTransformedSql.replace(/"/g, '\\"'));
+                        setGeneratedSql(selectStarTransformedSql);
                         return [3 /*break*/, 4];
                     case 3:
                         e_1 = _b.sent();
@@ -50,15 +50,22 @@ function ProgrammaticOptions(_a) {
         }); };
         getData();
     }, [queryBundleRequest, queryResultBundle]);
-    return (react_1.default.createElement(ProgrammaticInstructionsModal_1.ProgrammaticInstructionsModal, { show: true, onClose: onHide, title: 'Download Programmatically', cliNotes: react_1.default.createElement(react_1.default.Fragment, null, "This command line code will download Synapse files AND file annotations to your working directory."), cliCode: "synapse get -q \"" + generatedSql + "\"", rNotes: react_1.default.createElement(react_1.default.Fragment, null,
-            "This R code will download file annotations only. Use ",
-            react_1.default.createElement("a", { target: '_blank', rel: 'noopener noreferrer', href: 'https://help.synapse.org/docs/Get-Started-with-Downloading-Data.2004254837.html#GetStartedwithDownloadingData-DownloadingFiles' },
+    // Replace quotation marks with escaped quotations. For CLI, also escape backticks.
+    var commandLineSql = (0, react_1.useMemo)(function () { return generatedSql.replace(/(["`])/g, '\\$1'); }, [generatedSql]);
+    var clientSql = (0, react_1.useMemo)(function () { return generatedSql.replace(/"/g, '\\"'); }, [generatedSql]);
+    return (react_1.default.createElement(ProgrammaticInstructionsModal_1.ProgrammaticInstructionsModal, { show: true, onClose: onHide, title: "Download Programmatically", cliNotes: react_1.default.createElement(react_1.default.Fragment, null, "This command line code will download Synapse files AND file annotations to your working directory."), cliCode: "synapse get -q \"" + commandLineSql + "\"", rNotes: react_1.default.createElement(react_1.default.Fragment, null,
+            "This R code will download file annotations only. Use",
+            ' ',
+            react_1.default.createElement("a", { target: "_blank", rel: "noopener noreferrer", href: "https://help.synapse.org/docs/Get-Started-with-Downloading-Data.2004254837.html#GetStartedwithDownloadingData-DownloadingFiles" },
                 "synGet",
                 '()'),
-            " to loop over the list of Synapse IDs from the file annotations to download files."), rCode: "query " + '<-' + " synTableQuery(\"" + generatedSql + "\")" + '\n' + "read.table(query$filepath, sep = \",\")", pythonNotes: react_1.default.createElement(react_1.default.Fragment, null,
-            "This Python code will download file annotations only. Use ",
-            react_1.default.createElement("a", { target: '_blank', rel: 'noopener noreferrer', href: 'https://help.synapse.org/docs/Get-Started-with-Downloading-Data.2004254837.html#GetStartedwithDownloadingData-DownloadingFiles' }, "syn.get"),
-            " to loop over the list of Synapse IDs from the file annotations to download files."), pythonCode: "query = syn.tableQuery(\"" + generatedSql + "\")" + '\n' + "query.asDataFrame()" }));
+            ' ',
+            "to loop over the list of Synapse IDs from the file annotations to download files."), rCode: "query " + '<-' + " synTableQuery(\"" + clientSql + "\")" + '\n' + "read.table(query$filepath, sep = \",\")", pythonNotes: react_1.default.createElement(react_1.default.Fragment, null,
+            "This Python code will download file annotations only. Use",
+            ' ',
+            react_1.default.createElement("a", { target: "_blank", rel: "noopener noreferrer", href: "https://help.synapse.org/docs/Get-Started-with-Downloading-Data.2004254837.html#GetStartedwithDownloadingData-DownloadingFiles" }, "syn.get"),
+            ' ',
+            "to loop over the list of Synapse IDs from the file annotations to download files."), pythonCode: "query = syn.tableQuery(\"" + clientSql + "\")" + '\n' + "query.asDataFrame()" }));
 }
 exports.default = ProgrammaticOptions;
 //# sourceMappingURL=ProgrammaticTableDownload.js.map

package/dist/containers/table/table-top/ProgrammaticTableDownload.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ProgrammaticTableDownload.js","sourceRoot":"","sources":["../../../../src/lib/containers/table/table-top/ProgrammaticTableDownload.tsx"],"names":[],"mappings":";;;AAAA,0DAAgD;AAMhD,iGAA0D;AAC1D,8DAA+E;AAC/E,qFAAmF;AAQnF,SAAS,mBAAmB,CAAC,EAIF;IAJ3B,iBAiGC;QAhGC,kBAAkB,wBAAA,EAClB,iBAAiB,uBAAA,EACjB,MAAM,YAAA;IAEA,IAAA,KAAkC,IAAA,gBAAQ,EAAC,EAAE,CAAC,EAA7C,YAAY,QAAA,EAAE,eAAe,QAAgB,CAAA;IACpD,IAAA,iCAAoB,EAAC;QACnB,IAAM,OAAO,GAAG;;;;;wBACN,KAAK,GAAK,kBAAkB,MAAvB,CAAuB;wBAC5B,GAAG,GAA0B,KAAK,IAA/B,EAAE,KAAwB,KAAK,eAAV,EAAnB,cAAc,mBAAG,EAAE,KAAA,CAAU;wBAClC,YAAY,GAAK,iBAAiB,aAAtB,CAAsB;wBAC1C,IAAI,CAAC,YAAY,EAAE;4BACjB,OAAO,CAAC,KAAK,CACX,kEAAkE,CACnE,CAAA;yBACF;wBACK,6BAA6B,GAAkC;4BACnE,YAAY,EACV,oEAAoE;4BACtE,cAAc,EAAE,GAAG;4BACnB,cAAc,gBAAA;4BACd,MAAM,EAAE,YAAa;yBACtB,CAAA;;;;wBAGa,qBAAM,IAAA,gDAAgC,EAChD,6BAA6B,CAC9B;4BACD,iGAAiG;4BACjG,mCAAmC;0BAFlC;;wBAFK,GAAG,GAAG,SAEX;wBAGK,WAAW,GAAG,GAAG,CAAC,cAAc,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,UAAU,CAAC,CAAA;wBAClE,wBAAwB,GAAG,cAAY,GAAG,CAAC,cAAc,CAAC,SAAS,CACvE,WAAW,CACV,CAAA;wBACH,eAAe,CAAC,wBAAwB,CAAC,CAAA;;;;wBAEzC,OAAO,CAAC,KAAK,CAAC,4CAA4C,EAAE,GAAC,CAAC,CAAA;;;;;aAEjE,CAAA;QACD,OAAO,EAAE,CAAA;IACX,CAAC,EAAE,CAAC,kBAAkB,EAAE,iBAAiB,CAAC,CAAC,CAAA;IAE3C,mFAAmF;IACnF,IAAM,cAAc,GAAG,IAAA,eAAO,EAC5B,cAAM,OAAA,YAAY,CAAC,OAAO,CAAC,SAAS,EAAE,MAAM,CAAC,EAAvC,CAAuC,EAC7C,CAAC,YAAY,CAAC,CACf,CAAA;IAED,IAAM,SAAS,GAAG,IAAA,eAAO,EACvB,cAAM,OAAA,YAAY,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,EAAjC,CAAiC,EACvC,CAAC,YAAY,CAAC,CACf,CAAA;IAED,OAAO,CACL,8BAAC,6DAA6B,IAC5B,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,MAAM,EACf,KAAK,EAAC,2BAA2B,EACjC,QAAQ,EACN,mKAGG,EAEL,OAAO,EAAE,sBAAmB,cAAc,OAAG,EAC7C,MAAM,EACJ;;YACuD,GAAG;YACxD,qCACE,MAAM,EAAC,QAAQ,EACf,GAAG,EAAC,qBAAqB,EACzB,IAAI,EAAC,gIAAgI;;gBAE9H,IAAI,CACT;YAAC,GAAG;gGAGP,EAEL,KAAK,EAAE,WAAS,IAAI,yBAAmB,SAAS,WAAK,IAAI,4CAAuC,EAChG,WAAW,EACT;;YAC4D,GAAG;YAC7D,qCACE,MAAM,EAAC,QAAQ,EACf,GAAG,EAAC,qBAAqB,EACzB,IAAI,EAAC,gIAAgI,cAGnI;YAAC,GAAG;gGAGP,EAEL,UAAU,EAAE,8BAA2B,SAAS,WAAK,IAAI,wBAAqB,GAC9E,CACH,CAAA;AACH,CAAC;AAED,kBAAe,mBAAmB,CAAA"}

package/dist/style/base/_icons.scss

@@ -96,3 +96,7 @@ svg.HelpButton {
   cursor: pointer;
   font-size: 0.8em;
 }
+
+.SRC-color-warning {
+  color: map.get(SRC.$colors, 'warning');
+}

package/dist/style/components/_dataset-editor.scss

@@ -1,5 +1,6 @@
 @use '../abstracts/variables' as SRC;
 @use '../abstracts/mixins' as SrcMixins;
+@use '../../template_style/form' as Form;
 @use 'sass:map';
 
 .DatasetEditor {
@@ -24,6 +25,7 @@
   .DatasetEditorTableContainer {
     width: 100%;
     overflow-x: auto;
+    @include Form.customCheckbox($checkbox-top-offset: 5px);
     .DatasetEditorTable {
       p {
         margin-bottom: unset;
@@ -58,6 +60,10 @@
 .EntityNameWithIconRenderer {
   text-overflow: ellipsis;
   white-space: nowrap;
+
+  svg {
+    margin-bottom: 3px;
+  }
 }
 
 .EntityErrorRenderer {

package/dist/style/components/_markdown.scss

@@ -59,7 +59,7 @@
   word-wrap: break-word;
   overflow-x: auto;
   overflow-y: hidden;
-  line-height: 1.8em;
+  line-height: 1.5em;
   color: #515359;
   font-weight: normal;
   &.markdown-inline {

package/dist/style/components/entity_finder/_details-view.scss

@@ -1,6 +1,7 @@
 @use '../../abstracts/variables' as SRC;
 @use './entity-finder' as EntityFinder;
 @use '../../abstracts/mixins' as SrcMixins;
+@use '../../../template_style/form' as Form;
 
 $table-prefix: DetailsViewTable;
 $table-font-size: 16px;
@@ -15,9 +16,11 @@ $row-hovered-background-color: unset;
     overflow-y: hidden;
   }
 }
-
-.DetailsViewTable__header {
-  box-shadow: 3px 3px 7px -1px rgba(0, 0, 30, 0.2);
+.DetailsViewTable {
+  .DetailsViewTable__header {
+    box-shadow: 3px 3px 7px -1px rgba(0, 0, 30, 0.2);
+  }
+  @include Form.customCheckbox($checkbox-top-offset: 3px);
 }
 
 .EntityFinderDetailsView {
@@ -56,11 +59,8 @@ $row-hovered-background-color: unset;
   }
 
   &[aria-selected='true'] {
-    color: $-selected-color;
     background-color: $-selected-background-color;
     .UserCardSmall {
-      color: $-selected-color !important;
-      border-color: $-selected-color !important;
     }
   }
 

package/dist/style/components/entity_finder/_entity-finder.scss

@@ -7,16 +7,12 @@ $-header-height: 45px;
 $-border: $-border-size solid SRC.$border-color-gray;
 $-finder-height: 500px;
 $-breadcrumb-height: 40px;
-$-selected-color: white;
-$-selected-background-color: SRC.$primary-action-color-active;
+$-selected-background-color: map.get(SRC.$secondary-color-palette, 200);
 $-selected-hover-background-color: color.adjust(
   $-selected-background-color,
-  $lightness: -5%
-);
-$-hover-background-color: color.change(
-  SRC.$primary-action-color-active,
-  $alpha: 0.2
+  $lightness: -10%
 );
+$-hover-background-color: map.get(SRC.$primary-color-palette, 100);
 $-tree-only-width: 600px;
 $-splitter-width: 12px;
 

package/dist/style/components/entity_finder/_tree-node-browse.scss

@@ -21,9 +21,7 @@
     }
   }
 
-  .Node.BrowseNode[aria-disabled='false'][aria-selected='true']
-    > .EntityName
-    > span {
+  .Node.BrowseNode[aria-disabled='false'][aria-selected='true'] > .EntityName {
     font-weight: bold;
   }
 }

package/dist/style/components/entity_finder/_tree-node-select.scss

@@ -28,10 +28,6 @@
     }
     .Node.SelectNode[aria-selected='true'] {
       background: $-selected-background-color;
-      color: $-selected-color;
-      > .ExpandButton {
-        color: rgb(255, 255, 255);
-      }
       &:hover {
         @include -hover($-selected-hover-background-color);
       }

package/dist/style/components/query_filter/_enum-facet-filter.scss

@@ -1,5 +1,6 @@
 @use '../../abstracts/variables' as SRC;
 @use 'sass:color';
+@use '../../../template_style/form' as Form;
 
 .EnumFacetFilter {
   $input-icon-margin: 5px;
@@ -93,13 +94,15 @@
     right: $input-icon-margin;
   }
 
+  @include Form.customCheckbox($checkbox-top-offset: 3px);
+
   &__checkbox {
     > label {
       display: flex;
       flex-wrap: nowrap;
       &::before {
         flex: none;
-        align-self: center;
+        align-self: start;
       }
 
       > span {