synapse-react-client 2.1.23 → 3.0.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/containers/CardContainer.d.ts +0 -8
- package/dist/containers/CardContainer.js +13 -23
- package/dist/containers/CardContainer.js.map +1 -1
- package/dist/containers/CardContainerLogic.d.ts +3 -76
- package/dist/containers/CardContainerLogic.js +29 -150
- package/dist/containers/CardContainerLogic.js.map +1 -1
- package/dist/containers/EntityLink.js +2 -2
- package/dist/containers/EntityLink.js.map +1 -1
- package/dist/containers/FullTextSearch.d.ts +1 -5
- package/dist/containers/FullTextSearch.js +9 -9
- package/dist/containers/FullTextSearch.js.map +1 -1
- package/dist/containers/HasAccess.js +3 -2
- package/dist/containers/HasAccess.js.map +1 -1
- package/dist/containers/MarkdownPopover.js +1 -1
- package/dist/containers/MarkdownPopover.js.map +1 -1
- package/dist/containers/MissingQueryResultsWarning.d.ts +12 -0
- package/dist/containers/MissingQueryResultsWarning.js +64 -0
- package/dist/containers/MissingQueryResultsWarning.js.map +1 -0
- package/dist/containers/QueryCount.js +16 -44
- package/dist/containers/QueryCount.js.map +1 -1
- package/dist/containers/QueryVisualizationWrapper.d.ts +48 -0
- package/dist/containers/QueryVisualizationWrapper.js +81 -0
- package/dist/containers/QueryVisualizationWrapper.js.map +1 -0
- package/dist/containers/QueryWrapper.d.ts +55 -145
- package/dist/containers/QueryWrapper.js +188 -263
- package/dist/containers/QueryWrapper.js.map +1 -1
- package/dist/containers/QueryWrapperErrorBanner.d.ts +5 -0
- package/dist/containers/QueryWrapperErrorBanner.js +16 -0
- package/dist/containers/QueryWrapperErrorBanner.js.map +1 -0
- package/dist/containers/SearchV2.d.ts +6 -2
- package/dist/containers/SearchV2.js +11 -11
- package/dist/containers/SearchV2.js.map +1 -1
- package/dist/containers/SqlEditor.d.ts +1 -5
- package/dist/containers/SqlEditor.js +8 -7
- package/dist/containers/SqlEditor.js.map +1 -1
- package/dist/containers/TotalQueryResults.d.ts +3 -6
- package/dist/containers/TotalQueryResults.js +42 -58
- package/dist/containers/TotalQueryResults.js.map +1 -1
- package/dist/containers/download_list/DownloadConfirmation.d.ts +4 -4
- package/dist/containers/download_list/DownloadConfirmation.js +15 -17
- package/dist/containers/download_list/DownloadConfirmation.js.map +1 -1
- package/dist/containers/home_page/featured-data/FacetPlotsCard.d.ts +1 -4
- package/dist/containers/home_page/featured-data/FacetPlotsCard.js +11 -8
- package/dist/containers/home_page/featured-data/FacetPlotsCard.js.map +1 -1
- package/dist/containers/home_page/featured-data/QueryPerFacetPlotsCard.d.ts +1 -1
- package/dist/containers/home_page/featured-data/QueryPerFacetPlotsCard.js +8 -9
- package/dist/containers/home_page/featured-data/QueryPerFacetPlotsCard.js.map +1 -1
- package/dist/containers/home_page/featured-data/SingleQueryFacetPlotsCards.d.ts +1 -1
- package/dist/containers/home_page/featured-data/SingleQueryFacetPlotsCards.js +10 -11
- package/dist/containers/home_page/featured-data/SingleQueryFacetPlotsCards.js.map +1 -1
- package/dist/containers/query_wrapper_plot_nav/FilterAndView.d.ts +2 -4
- package/dist/containers/query_wrapper_plot_nav/FilterAndView.js +12 -5
- package/dist/containers/query_wrapper_plot_nav/FilterAndView.js.map +1 -1
- package/dist/containers/query_wrapper_plot_nav/QueryFilterToggleButton.d.ts +1 -2
- package/dist/containers/query_wrapper_plot_nav/QueryFilterToggleButton.js +9 -10
- package/dist/containers/query_wrapper_plot_nav/QueryFilterToggleButton.js.map +1 -1
- package/dist/containers/query_wrapper_plot_nav/QueryWrapperPlotNav.d.ts +4 -4
- package/dist/containers/query_wrapper_plot_nav/QueryWrapperPlotNav.js +53 -35
- package/dist/containers/query_wrapper_plot_nav/QueryWrapperPlotNav.js.map +1 -1
- package/dist/containers/synapse_form_wrapper/SynapseFormWrapper.js +1 -1
- package/dist/containers/synapse_form_wrapper/SynapseFormWrapper.js.map +1 -1
- package/dist/containers/table/StandaloneQueryWrapper.d.ts +4 -6
- package/dist/containers/table/StandaloneQueryWrapper.js +29 -19
- package/dist/containers/table/StandaloneQueryWrapper.js.map +1 -1
- package/dist/containers/table/SynapseTable.d.ts +12 -13
- package/dist/containers/table/SynapseTable.js +100 -136
- package/dist/containers/table/SynapseTable.js.map +1 -1
- package/dist/containers/table/TopLevelControls.d.ts +1 -4
- package/dist/containers/table/TopLevelControls.js +31 -44
- package/dist/containers/table/TopLevelControls.js.map +1 -1
- package/dist/containers/table/table-top/ColumnSelection.d.ts +1 -1
- package/dist/containers/table/table-top/ColumnSelection.js +3 -5
- package/dist/containers/table/table-top/ColumnSelection.js.map +1 -1
- package/dist/containers/table/table-top/DownloadOptions.d.ts +0 -2
- package/dist/containers/table/table-top/DownloadOptions.js +7 -6
- package/dist/containers/table/table-top/DownloadOptions.js.map +1 -1
- package/dist/containers/table/table-top/ProgrammaticTableDownload.js +15 -8
- package/dist/containers/table/table-top/ProgrammaticTableDownload.js.map +1 -1
- package/dist/containers/widgets/facet-nav/FacetNav.d.ts +1 -3
- package/dist/containers/widgets/facet-nav/FacetNav.js +14 -10
- package/dist/containers/widgets/facet-nav/FacetNav.js.map +1 -1
- package/dist/containers/widgets/facet-nav/FacetNavPanel.d.ts +5 -8
- package/dist/containers/widgets/facet-nav/FacetNavPanel.js +15 -12
- package/dist/containers/widgets/facet-nav/FacetNavPanel.js.map +1 -1
- package/dist/containers/widgets/query-filter/EnumFacetFilter.d.ts +3 -3
- package/dist/containers/widgets/query-filter/EnumFacetFilter.js +2 -2
- package/dist/containers/widgets/query-filter/EnumFacetFilter.js.map +1 -1
- package/dist/containers/widgets/query-filter/QueryFilter.d.ts +7 -12
- package/dist/containers/widgets/query-filter/QueryFilter.js +12 -9
- package/dist/containers/widgets/query-filter/QueryFilter.js.map +1 -1
- package/dist/containers/widgets/query-filter/RangeFacetFilter.d.ts +4 -4
- package/dist/containers/widgets/query-filter/RangeFacetFilter.js +4 -4
- package/dist/containers/widgets/query-filter/RangeFacetFilter.js.map +1 -1
- package/dist/index.d.ts +3 -6
- package/dist/index.js +3 -5
- package/dist/index.js.map +1 -1
- package/dist/style/base/_icons.scss +4 -0
- package/dist/style/components/_dataset-editor.scss +6 -0
- package/dist/style/components/_markdown.scss +1 -1
- package/dist/style/components/entity_finder/_details-view.scss +6 -6
- package/dist/style/components/entity_finder/_entity-finder.scss +3 -7
- package/dist/style/components/entity_finder/_tree-node-browse.scss +1 -3
- package/dist/style/components/entity_finder/_tree-node-select.scss +0 -4
- package/dist/style/components/query_filter/_enum-facet-filter.scss +4 -1
- package/dist/style/main.css +887 -19
- package/dist/template_style/_form.scss +150 -105
- package/dist/umd/synapse-react-client.development.css +805 -19
- package/dist/umd/synapse-react-client.development.css.map +2 -2
- package/dist/umd/synapse-react-client.development.js +3792 -3581
- package/dist/umd/synapse-react-client.development.js.map +3 -3
- package/dist/umd/synapse-react-client.production.min.css +1 -1
- package/dist/umd/synapse-react-client.production.min.js +89 -89
- package/dist/utils/APIConstants.d.ts +3 -0
- package/dist/utils/APIConstants.js +12 -2
- package/dist/utils/APIConstants.js.map +1 -1
- package/dist/utils/SynapseClient.d.ts +47 -20
- package/dist/utils/SynapseClient.js +278 -209
- package/dist/utils/SynapseClient.js.map +1 -1
- package/dist/utils/SynapseConstants.d.ts +1 -0
- package/dist/utils/SynapseConstants.js +3 -2
- package/dist/utils/SynapseConstants.js.map +1 -1
- package/dist/utils/functions/EntityTypeUtils.d.ts +13 -1
- package/dist/utils/functions/EntityTypeUtils.js +25 -1
- package/dist/utils/functions/EntityTypeUtils.js.map +1 -1
- package/dist/utils/functions/queryUtils.d.ts +2 -2
- package/dist/utils/functions/queryUtils.js +22 -5
- package/dist/utils/functions/queryUtils.js.map +1 -1
- package/dist/utils/functions/sqlFunctions.d.ts +4 -0
- package/dist/utils/functions/sqlFunctions.js +14 -2
- package/dist/utils/functions/sqlFunctions.js.map +1 -1
- package/dist/utils/functions/unCamelCase.d.ts +1 -1
- package/dist/utils/functions/unCamelCase.js.map +1 -1
- package/dist/utils/hooks/SynapseAPI/useGetQueryResultBundle.d.ts +4 -3
- package/dist/utils/hooks/SynapseAPI/useGetQueryResultBundle.js +67 -1
- package/dist/utils/hooks/SynapseAPI/useGetQueryResultBundle.js.map +1 -1
- package/dist/utils/synapseTypes/Entity/Entity.js.map +1 -1
- package/dist/utils/synapseTypes/Table/AsynchronousJobStatus.d.ts +5 -4
- package/dist/utils/synapseTypes/Table/EntityView.d.ts +8 -0
- package/dist/utils/synapseTypes/Table/EntityView.js +9 -0
- package/dist/utils/synapseTypes/Table/EntityView.js.map +1 -1
- package/dist/utils/synapseTypes/Table/FacetColumnRequest.d.ts +1 -1
- package/dist/utils/synapseTypes/Table/FacetColumnResult.d.ts +10 -10
- package/dist/utils/synapseTypes/Table/QueryResultBundle.d.ts +1 -0
- package/package.json +46 -39
- package/dist/containers/StackedBarChart.d.ts +0 -63
- package/dist/containers/StackedBarChart.js +0 -229
- package/dist/containers/StackedBarChart.js.map +0 -1
- package/dist/utils/functions/facetUtils.d.ts +0 -20
- package/dist/utils/functions/facetUtils.js +0 -37
- package/dist/utils/functions/facetUtils.js.map +0 -1
- package/dist/utils/synapseTypes/DownloadListV2/DownloadListManifestResponse.d.ts +0 -4
- package/dist/utils/synapseTypes/DownloadListV2/DownloadListManifestResponse.js +0 -3
- package/dist/utils/synapseTypes/DownloadListV2/DownloadListManifestResponse.js.map +0 -1
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"use strict";
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exports.
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exports.
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exports.
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exports.getTeamList = exports.getUserTeamList = exports.getUserChallenges = exports.removeUserFavorite = exports.getUserFavorites = exports.getEntityWiki = exports.getEntityBundleV2 = exports.deleteEntity = exports.updateEntity = exports.getEntityHeader = exports.getEntityHeaders = exports.getEntityHeadersByIds = exports.getEntity = exports.getBulkFiles = exports.getFiles = exports.lookupChildEntity = exports.getEntityChildren = exports.getUserProfiles = exports.getGroupHeadersBatch = exports.getUserGroupHeaders = exports.updateMyUserProfile = exports.getMyUserBundle = exports.getUserBundle = exports.getUserProfileById = exports.getUserProfile = exports.createProject = exports.createEntity = exports.oAuthSessionRequest = exports.oAuthUrlRequest = exports.login = exports.getFullQueryTableResults = exports.getQueryTableResults = exports.getQueryTableAsyncJobResults = exports.getAsyncResultBodyFromJobId = exports.getAsyncResultFromJobId = exports.getFileHandleByIdURL = exports.getActualFileHandleByIdURL = exports.getFileHandleById = exports.getDownloadFromTableRequest = exports.getVersion = exports.doPut = exports.doDelete = exports.doGet = exports.doPost = exports.SynapseClientError = exports.delay = exports.getRootURL = exports.SYNAPSE_STORAGE_LOCATION_ID = exports.ACCESS_TOKEN_COOKIE_KEY = exports.IS_OUTSIDE_SYNAPSE_ORG = void 0;
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exports.acceptFormData = exports.listFormDataAsFormAdmin = exports.listFormData = exports.submitFormData = exports.deleteFormData = exports.updateFormData = exports.createFormData = exports.updateFormACL = exports.getFormACL = exports.createFormGroup = exports.consentToOAuth2Request = exports.getAuthenticatedOn = exports.getOAuth2Client = exports.hasUserAuthorizedOAuthClient = exports.getOAuth2RequestDescription = exports.getEvaluationSubmissions = exports.deleteEvaluationRound = exports.updateEvaluationRound = exports.createEvaluationRound = exports.getEvaluationRoundsList = exports.getEvaluationRound = exports.deleteEvaluation = exports.createEvaluation = exports.updateEvaluation = exports.getEvaluation = exports.getEvaluationPermissions = exports.submitToEvaluation = exports.createACL = exports.addFilesToDownloadListV2 = exports.createManifestFromDownloadListV2 = exports.createPackageFromDownloadListV2 = exports.addFileToDownloadListV2 = exports.getFileResult = exports.getFileHandleContent = exports.getFileHandleContentFromID = exports.startMultipartUpload = exports.checkUploadComplete = exports.uploadFile = exports.signOut = exports.detectSSOCode = exports.getPrincipalAliasRequest = exports.getUseUtcTimeFromCookie = exports.getAccessTokenFromCookie = exports.setAccessTokenCookie = exports.isInSynapseExperimentalMode = exports.getPresignedUrlForWikiAttachment = exports.getWikiAttachmentsFromEvaluation = exports.getWikiAttachmentsFromEntity = exports.getWikiPageKeyForAccessRequirement = exports.getWikiPageKeyForEntity = void 0;
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exports.createProfileVerificationSubmission = exports.signSynapseTermsOfUse = exports.bindOAuthProviderToAccount = exports.oAuthRegisterAccountStep2 = exports.registerAccountStep2 = exports.registerAccountStep1 = exports.isAliasAvailable = exports.getNotificationEmail = exports.updateEntityJson = exports.getEntityJson = exports.hasAccessToEntity = exports.getValidationSchema = exports.getSchema = exports.getSchemaValidationResults = exports.getSchemaBinding = exports.cancelDataAccessRequest = exports.submitDataAccessRequest = exports.updateDataAccessRequest = exports.getDataAccessRequestForUpdate = exports.getResearchProject = exports.updateResearchProject = exports.removeItemFromDownloadListV2 = exports.getDownloadListActionsRequired = exports.getDownloadListStatistics = exports.getAvailableFilesToDownload = exports.clearDownloadListV2 = exports.searchEntities = exports.getEntityVersions = exports.getEntityPath = exports.getUserProjects = exports.getMyProjects = exports.deletePersonalAccessToken = exports.getPersonalAccessTokenRecords = exports.createPersonalAccessToken = exports.getTransformSqlWithFacetsRequest = exports.updateTable = exports.deleteDownloadList = exports.deleteDownloadListFiles = exports.getAllOfPaginatedService = exports.getDownloadOrder = exports.getDownloadList = exports.postAccessApproval = exports.getAccessApproval = exports.getAllAccessRequirements = exports.getAccessRequirementStatus = exports.getAccessRequirementById = exports.getAccessRequirement = exports.getRestrictionInformation = exports.getProjectStatistics = exports.rejectFormData = void 0;
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exports.changePasswordWithCurrentPassword = void 0;
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* HTTP status code.
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var SynapseClientError = /** @class */ (function (_super) {
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(0, tslib_1.__extends)(SynapseClientError, _super);
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function SynapseClientError(status, reason) {
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/*
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// @ts-ignore
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|
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var getQueryTableAsyncJobResults = function (queryBundleRequest, accessToken) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
|
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|
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|
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|
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|
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return [2 /*return*/, (0, exports.getAsyncResultFromJobId)(asyncJobId.token, (0, APIConstants_1.TABLE_QUERY_ASYNC_GET)(queryBundleRequest.entityId, asyncJobId.token), accessToken)];
|
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|
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|
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|
|
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|
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};
|
|
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|
+
}); };
|
|
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|
+
exports.getQueryTableAsyncJobResults = getQueryTableAsyncJobResults;
|
|
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|
+
/**
|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
+
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|
|
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|
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var getQueryTableResults = function (queryBundleRequest, accessToken) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
|
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|
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|
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|
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|
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|
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|
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|
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case 0: return [4 /*yield*/, (0, exports.doPost)("/repo/v1/entity/" + queryBundleRequest.entityId + "/table/query/async/start", queryBundleRequest, accessToken, undefined, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)];
|
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|
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|
|
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+
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|
|
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|
+
return [2 /*return*/, (0, exports.getAsyncResultBodyFromJobId)(asyncJobId.token, "/repo/v1/entity/" + queryBundleRequest.entityId + "/table/query/async/get/" + asyncJobId.token, accessToken)];
|
|
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|
+
}
|
|
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|
+
});
|
|
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|
+
}); };
|
|
289
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|
exports.getQueryTableResults = getQueryTableResults;
|
|
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|
/**
|
|
291
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|
* Run and return results from queryBundleRequest, queryBundle request must be of the
|
|
@@ -500,17 +561,26 @@ exports.getFiles = getFiles;
|
|
|
500
561
|
*/
|
|
501
562
|
var getBulkFiles = function (bulkFileDownloadRequest, accessToken) {
|
|
502
563
|
if (accessToken === void 0) { accessToken = undefined; }
|
|
503
|
-
return (0,
|
|
504
|
-
|
|
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|
-
|
|
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|
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|
|
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|
-
|
|
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|
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|
|
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|
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|
|
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|
-
|
|
564
|
+
return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
|
|
565
|
+
var asyncJobId;
|
|
566
|
+
return (0, tslib_1.__generator)(this, function (_a) {
|
|
567
|
+
switch (_a.label) {
|
|
568
|
+
case 0: return [4 /*yield*/, (0, exports.doPost)('/file/v1/file/bulk/async/start', bulkFileDownloadRequest, accessToken, undefined, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)];
|
|
569
|
+
case 1:
|
|
570
|
+
asyncJobId = _a.sent();
|
|
571
|
+
return [2 /*return*/, (0, exports.getAsyncResultBodyFromJobId)(asyncJobId.token, "/file/v1/file/bulk/async/get/" + asyncJobId.token, accessToken)];
|
|
572
|
+
}
|
|
573
|
+
});
|
|
511
574
|
});
|
|
512
575
|
};
|
|
513
576
|
exports.getBulkFiles = getBulkFiles;
|
|
577
|
+
/**
|
|
578
|
+
* Bundled access to Entity and related data components.
|
|
579
|
+
* An EntityBundle can be used to create, fetch, or update an Entity and associated
|
|
580
|
+
* objects with a single web service request.
|
|
581
|
+
* See SynapseClient.test.js for an example partsMask.
|
|
582
|
+
* https://rest-docs.synapse.org/rest/org/sagebionetworks/repo/model/Entity.html
|
|
583
|
+
*/
|
|
514
584
|
var getEntity = function (accessToken, entityId, versionNumber) {
|
|
515
585
|
if (accessToken === void 0) { accessToken = undefined; }
|
|
516
586
|
if (entityId.indexOf('.') > -1) {
|
|
@@ -815,11 +885,13 @@ var detectSSOCode = function (registerAccountUrl, onError) {
|
|
|
815
885
|
}
|
|
816
886
|
};
|
|
817
887
|
if (state) {
|
|
818
|
-
(0, exports.oAuthRegisterAccountStep2)(state, provider, code, redirectUrl, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)
|
|
888
|
+
(0, exports.oAuthRegisterAccountStep2)(state, provider, code, redirectUrl, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)
|
|
889
|
+
.then(onSuccess)
|
|
819
890
|
.catch(onFailure);
|
|
820
891
|
}
|
|
821
892
|
else {
|
|
822
|
-
(0, exports.oAuthSessionRequest)(provider, code, redirectUrl, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)
|
|
893
|
+
(0, exports.oAuthSessionRequest)(provider, code, redirectUrl, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)
|
|
894
|
+
.then(onSuccess)
|
|
823
895
|
.catch(onFailure);
|
|
824
896
|
}
|
|
825
897
|
}
|
|
@@ -831,7 +903,8 @@ var detectSSOCode = function (registerAccountUrl, onError) {
|
|
|
831
903
|
onError(err.reason);
|
|
832
904
|
}
|
|
833
905
|
};
|
|
834
|
-
(0, exports.bindOAuthProviderToAccount)(provider, code, redirectUrl, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)
|
|
906
|
+
(0, exports.bindOAuthProviderToAccount)(provider, code, redirectUrl, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)
|
|
907
|
+
.then(redirectAfterSuccess_1)
|
|
835
908
|
.catch(onFailure);
|
|
836
909
|
}
|
|
837
910
|
}
|
|
@@ -999,36 +1072,22 @@ var uploadFilePart = function (presignedUrl, file, contentType) { return (0, tsl
|
|
|
999
1072
|
var startMultipartUpload = function (accessToken, fileName, file, request, fileUploadResolve, fileUploadReject) {
|
|
1000
1073
|
var url = '/file/v1/file/multipart';
|
|
1001
1074
|
(0, exports.doPost)(url, request, accessToken, undefined, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)
|
|
1002
|
-
.then(function (status) {
|
|
1003
|
-
|
|
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|
-
|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
-
|
|
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|
-
|
|
1012
|
-
|
|
1013
|
-
case 1:
|
|
1014
|
-
if (!(i < clientSidePartsState.length)) return [3 /*break*/, 4];
|
|
1015
|
-
if (!!clientSidePartsState[i]) return [3 /*break*/, 3];
|
|
1016
|
-
// upload this part. note that partNumber is always the index+1
|
|
1017
|
-
return [4 /*yield*/, processFilePart(i + 1, status, accessToken, fileName, file, request, fileUploadResolve, fileUploadReject)];
|
|
1018
|
-
case 2:
|
|
1019
|
-
// upload this part. note that partNumber is always the index+1
|
|
1020
|
-
_a.sent();
|
|
1021
|
-
_a.label = 3;
|
|
1022
|
-
case 3:
|
|
1023
|
-
i = i + 1;
|
|
1024
|
-
return [3 /*break*/, 1];
|
|
1025
|
-
case 4:
|
|
1026
|
-
// in case there is no upload work to do!
|
|
1027
|
-
(0, exports.checkUploadComplete)(status, fileName, accessToken, fileUploadResolve, fileUploadReject);
|
|
1028
|
-
return [2 /*return*/];
|
|
1075
|
+
.then(function (status) {
|
|
1076
|
+
// started the upload
|
|
1077
|
+
// keep track of the part state client-side
|
|
1078
|
+
var clientSidePartsState = status.partsState
|
|
1079
|
+
.split('')
|
|
1080
|
+
.map(function (bit) { return bit === '1'; });
|
|
1081
|
+
status.clientSidePartsState = clientSidePartsState;
|
|
1082
|
+
for (var i = 0; i < clientSidePartsState.length; i = i + 1) {
|
|
1083
|
+
if (!clientSidePartsState[i]) {
|
|
1084
|
+
// upload this part. note that partNumber is always the index+1
|
|
1085
|
+
processFilePart(i + 1, status, accessToken, fileName, file, request, fileUploadResolve, fileUploadReject);
|
|
1029
1086
|
}
|
|
1030
|
-
}
|
|
1031
|
-
|
|
1087
|
+
}
|
|
1088
|
+
// in case there is no upload work to do!
|
|
1089
|
+
(0, exports.checkUploadComplete)(status, fileName, accessToken, fileUploadResolve, fileUploadReject);
|
|
1090
|
+
})
|
|
1032
1091
|
.catch(function (error) {
|
|
1033
1092
|
fileUploadReject(error);
|
|
1034
1093
|
});
|
|
@@ -1132,39 +1191,44 @@ exports.addFileToDownloadListV2 = addFileToDownloadListV2;
|
|
|
1132
1191
|
/**
|
|
1133
1192
|
* http://rest-docs.synapse.org/rest/POST/download/list/package/async/start.html
|
|
1134
1193
|
*/
|
|
1135
|
-
var createPackageFromDownloadListV2 = function (zipFileName, accessToken,
|
|
1136
|
-
|
|
1137
|
-
|
|
1138
|
-
|
|
1139
|
-
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|
1140
|
-
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|
1141
|
-
|
|
1142
|
-
|
|
1143
|
-
|
|
1144
|
-
|
|
1145
|
-
|
|
1146
|
-
|
|
1147
|
-
|
|
1148
|
-
|
|
1194
|
+
var createPackageFromDownloadListV2 = function (zipFileName, accessToken) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
|
|
1195
|
+
var request, asyncJobId;
|
|
1196
|
+
return (0, tslib_1.__generator)(this, function (_a) {
|
|
1197
|
+
switch (_a.label) {
|
|
1198
|
+
case 0:
|
|
1199
|
+
request = {
|
|
1200
|
+
zipFileName: zipFileName,
|
|
1201
|
+
includeManifest: true,
|
|
1202
|
+
concreteType: 'org.sagebionetworks.repo.model.download.DownloadListPackageRequest',
|
|
1203
|
+
};
|
|
1204
|
+
return [4 /*yield*/, (0, exports.doPost)("/repo/v1/download/list/package/async/start", request, accessToken, undefined, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)];
|
|
1205
|
+
case 1:
|
|
1206
|
+
asyncJobId = _a.sent();
|
|
1207
|
+
return [2 /*return*/, (0, exports.getAsyncResultBodyFromJobId)(asyncJobId.token, "/repo/v1/download/list/package/async/get/" + asyncJobId.token, accessToken)];
|
|
1208
|
+
}
|
|
1149
1209
|
});
|
|
1150
|
-
};
|
|
1210
|
+
}); };
|
|
1151
1211
|
exports.createPackageFromDownloadListV2 = createPackageFromDownloadListV2;
|
|
1152
1212
|
/**
|
|
1153
1213
|
* http://rest-docs.synapse.org/rest/POST/download/list/package/async/start.html
|
|
1154
1214
|
*/
|
|
1155
|
-
var createManifestFromDownloadListV2 = function (accessToken
|
|
1215
|
+
var createManifestFromDownloadListV2 = function (accessToken) {
|
|
1156
1216
|
if (accessToken === void 0) { accessToken = undefined; }
|
|
1157
|
-
|
|
1158
|
-
|
|
1159
|
-
|
|
1160
|
-
|
|
1161
|
-
|
|
1162
|
-
|
|
1163
|
-
|
|
1164
|
-
|
|
1165
|
-
|
|
1166
|
-
|
|
1167
|
-
|
|
1217
|
+
return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
|
|
1218
|
+
var request, asyncJobId;
|
|
1219
|
+
return (0, tslib_1.__generator)(this, function (_a) {
|
|
1220
|
+
switch (_a.label) {
|
|
1221
|
+
case 0:
|
|
1222
|
+
request = {
|
|
1223
|
+
csvTableDescriptor: {},
|
|
1224
|
+
concreteType: 'org.sagebionetworks.repo.model.download.DownloadListManifestRequest',
|
|
1225
|
+
};
|
|
1226
|
+
return [4 /*yield*/, (0, exports.doPost)("/repo/v1/download/list/manifest/async/start", request, accessToken, undefined, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)];
|
|
1227
|
+
case 1:
|
|
1228
|
+
asyncJobId = _a.sent();
|
|
1229
|
+
return [2 /*return*/, (0, exports.getAsyncResultBodyFromJobId)(asyncJobId.token, "/repo/v1/download/list/manifest/async/get/" + asyncJobId.token, accessToken)];
|
|
1230
|
+
}
|
|
1231
|
+
});
|
|
1168
1232
|
});
|
|
1169
1233
|
};
|
|
1170
1234
|
exports.createManifestFromDownloadListV2 = createManifestFromDownloadListV2;
|
|
@@ -1172,17 +1236,17 @@ exports.createManifestFromDownloadListV2 = createManifestFromDownloadListV2;
|
|
|
1172
1236
|
* http://rest-docs.synapse.org/rest/POST/download/list/add/async/start.html
|
|
1173
1237
|
* Start an asynchronous job to add files to a user's download list from either a view query or a folder. Use GET /download/list/add/async/get/{asyncToken} to get both the job status and job results.
|
|
1174
1238
|
*/
|
|
1175
|
-
var addFilesToDownloadListV2 = function (request, accessToken
|
|
1239
|
+
var addFilesToDownloadListV2 = function (request, accessToken) {
|
|
1176
1240
|
if (accessToken === void 0) { accessToken = undefined; }
|
|
1177
1241
|
return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
|
|
1242
|
+
var asyncJobId;
|
|
1178
1243
|
return (0, tslib_1.__generator)(this, function (_a) {
|
|
1179
|
-
|
|
1180
|
-
|
|
1181
|
-
|
|
1182
|
-
|
|
1183
|
-
.
|
|
1184
|
-
|
|
1185
|
-
})];
|
|
1244
|
+
switch (_a.label) {
|
|
1245
|
+
case 0: return [4 /*yield*/, (0, exports.doPost)('/repo/v1/download/list/add/async/start', request, accessToken, undefined, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)];
|
|
1246
|
+
case 1:
|
|
1247
|
+
asyncJobId = _a.sent();
|
|
1248
|
+
return [2 /*return*/, (0, exports.getAsyncResultBodyFromJobId)(asyncJobId.token, "/repo/v1/download/list/add/async/get/" + asyncJobId.token, accessToken)];
|
|
1249
|
+
}
|
|
1186
1250
|
});
|
|
1187
1251
|
});
|
|
1188
1252
|
};
|
|
@@ -1626,14 +1690,18 @@ exports.deleteDownloadList = deleteDownloadList;
|
|
|
1626
1690
|
* @param {*} endpoint
|
|
1627
1691
|
* // technically returns a TableUpdateTransactionResponse, but I don't see any reason we need this
|
|
1628
1692
|
*/
|
|
1629
|
-
var updateTable = function (tableUpdateRequest, accessToken
|
|
1693
|
+
var updateTable = function (tableUpdateRequest, accessToken) {
|
|
1630
1694
|
if (accessToken === void 0) { accessToken = undefined; }
|
|
1631
|
-
return (0,
|
|
1632
|
-
|
|
1633
|
-
return (0,
|
|
1634
|
-
|
|
1635
|
-
|
|
1636
|
-
|
|
1695
|
+
return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
|
|
1696
|
+
var asyncJobId;
|
|
1697
|
+
return (0, tslib_1.__generator)(this, function (_a) {
|
|
1698
|
+
switch (_a.label) {
|
|
1699
|
+
case 0: return [4 /*yield*/, (0, exports.doPost)("/repo/v1/entity/" + tableUpdateRequest.entityId + "/table/transaction/async/start", tableUpdateRequest, accessToken, undefined, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)];
|
|
1700
|
+
case 1:
|
|
1701
|
+
asyncJobId = _a.sent();
|
|
1702
|
+
return [2 /*return*/, (0, exports.getAsyncResultBodyFromJobId)(asyncJobId.token, "/repo/v1/entity/" + tableUpdateRequest.entityId + "/table/transaction/async/get/" + asyncJobId.token, accessToken)];
|
|
1703
|
+
}
|
|
1704
|
+
});
|
|
1637
1705
|
});
|
|
1638
1706
|
};
|
|
1639
1707
|
exports.updateTable = updateTable;
|
|
@@ -1685,23 +1753,25 @@ var searchEntities = function (query, accessToken) {
|
|
|
1685
1753
|
return (0, exports.doPost)('/repo/v1/search', query, accessToken, undefined, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT);
|
|
1686
1754
|
};
|
|
1687
1755
|
exports.searchEntities = searchEntities;
|
|
1688
|
-
var getDownloadListJobResponse = function (accessToken, queryRequestDetails) {
|
|
1689
|
-
var downloadListQueryRequest
|
|
1690
|
-
|
|
1691
|
-
|
|
1692
|
-
|
|
1693
|
-
|
|
1694
|
-
|
|
1695
|
-
|
|
1696
|
-
|
|
1697
|
-
|
|
1698
|
-
|
|
1699
|
-
|
|
1700
|
-
|
|
1701
|
-
|
|
1702
|
-
|
|
1756
|
+
var getDownloadListJobResponse = function (accessToken, queryRequestDetails) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
|
|
1757
|
+
var downloadListQueryRequest, asyncJobId, response;
|
|
1758
|
+
return (0, tslib_1.__generator)(this, function (_a) {
|
|
1759
|
+
switch (_a.label) {
|
|
1760
|
+
case 0:
|
|
1761
|
+
downloadListQueryRequest = {
|
|
1762
|
+
concreteType: 'org.sagebionetworks.repo.model.download.DownloadListQueryRequest',
|
|
1763
|
+
requestDetails: queryRequestDetails,
|
|
1764
|
+
};
|
|
1765
|
+
return [4 /*yield*/, (0, exports.doPost)('/repo/v1/download/list/query/async/start', downloadListQueryRequest, accessToken, undefined, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)];
|
|
1766
|
+
case 1:
|
|
1767
|
+
asyncJobId = _a.sent();
|
|
1768
|
+
return [4 /*yield*/, (0, exports.getAsyncResultBodyFromJobId)(asyncJobId.token, "/repo/v1/download/list/query/async/get/" + asyncJobId.token, accessToken)];
|
|
1769
|
+
case 2:
|
|
1770
|
+
response = _a.sent();
|
|
1771
|
+
return [2 /*return*/, response.responseDetails];
|
|
1772
|
+
}
|
|
1703
1773
|
});
|
|
1704
|
-
};
|
|
1774
|
+
}); };
|
|
1705
1775
|
/**
|
|
1706
1776
|
* Clear all files from the user's Download List v2.
|
|
1707
1777
|
* http://rest-docs.synapse.org/rest/DELETE/download/list.html
|
|
@@ -1821,18 +1891,17 @@ exports.getSchema = getSchema;
|
|
|
1821
1891
|
* @returns
|
|
1822
1892
|
*/
|
|
1823
1893
|
var getValidationSchema = function (schema$id, accessToken) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
|
|
1894
|
+
var asyncJobId;
|
|
1824
1895
|
return (0, tslib_1.__generator)(this, function (_a) {
|
|
1825
|
-
|
|
1826
|
-
|
|
1827
|
-
|
|
1828
|
-
|
|
1829
|
-
.
|
|
1830
|
-
|
|
1831
|
-
|
|
1832
|
-
.
|
|
1833
|
-
|
|
1834
|
-
throw err;
|
|
1835
|
-
})];
|
|
1896
|
+
switch (_a.label) {
|
|
1897
|
+
case 0: return [4 /*yield*/, (0, exports.doPost)(APIConstants_1.SCHEMA_VALIDATION_START, {
|
|
1898
|
+
concreteType: 'org.sagebionetworks.repo.model.schema.GetValidationSchemaRequest',
|
|
1899
|
+
$id: schema$id,
|
|
1900
|
+
}, accessToken, undefined, getEndpoint_1.BackendDestinationEnum.REPO_ENDPOINT)];
|
|
1901
|
+
case 1:
|
|
1902
|
+
asyncJobId = _a.sent();
|
|
1903
|
+
return [2 /*return*/, (0, exports.getAsyncResultBodyFromJobId)(asyncJobId.token, (0, APIConstants_1.SCHEMA_VALIDATION_GET)(asyncJobId.token), accessToken)];
|
|
1904
|
+
}
|
|
1836
1905
|
});
|
|
1837
1906
|
}); };
|
|
1838
1907
|
exports.getValidationSchema = getValidationSchema;
|