synapse-react-client 2.0.60 → 2.1.1

package/dist/containers/TermsAndConditions.js

@@ -3,55 +3,55 @@ Object.defineProperty(exports, "__esModule", { value: true });
 var tslib_1 = require("tslib");
 var react_1 = (0, tslib_1.__importStar)(require("react"));
 var TermsAndConditionsItem_1 = (0, tslib_1.__importDefault)(require("./TermsAndConditionsItem"));
-var chat_bubbles_svg_1 = require("../assets/icons/terms/chat-bubbles.svg");
-var lock_svg_1 = require("../assets/icons/terms/lock.svg");
-var scale_svg_1 = require("../assets/icons/terms/scale.svg");
-var shield_svg_1 = require("../assets/icons/terms/shield.svg");
-var people_svg_1 = require("../assets/icons/terms/people.svg");
-var pen_svg_1 = require("../assets/icons/terms/pen.svg");
-var speaker_svg_1 = require("../assets/icons/terms/speaker.svg");
-var flag_svg_1 = require("../assets/icons/terms/flag.svg");
+var chat_bubbles_svg_1 = (0, tslib_1.__importDefault)(require("../assets/icons/terms/chat-bubbles.svg"));
+var lock_svg_1 = (0, tslib_1.__importDefault)(require("../assets/icons/terms/lock.svg"));
+var scale_svg_1 = (0, tslib_1.__importDefault)(require("../assets/icons/terms/scale.svg"));
+var shield_svg_1 = (0, tslib_1.__importDefault)(require("../assets/icons/terms/shield.svg"));
+var people_svg_1 = (0, tslib_1.__importDefault)(require("../assets/icons/terms/people.svg"));
+var pen_svg_1 = (0, tslib_1.__importDefault)(require("../assets/icons/terms/pen.svg"));
+var speaker_svg_1 = (0, tslib_1.__importDefault)(require("../assets/icons/terms/speaker.svg"));
+var flag_svg_1 = (0, tslib_1.__importDefault)(require("../assets/icons/terms/flag.svg"));
 var react_bootstrap_1 = require("react-bootstrap");
 var dataUseLink = "https://s3.amazonaws.com/static.synapse.org/governance/SynapseCommonsDataUseProcedure.pdf?v=4";
 var termsLink = "https://s3.amazonaws.com/static.synapse.org/governance/SageBionetworksSynapseTermsandConditionsofUse.pdf?v=5";
 var tcList = [
     {
-        icon: chat_bubbles_svg_1.ReactComponent,
+        icon: chat_bubbles_svg_1.default,
         label: 'I will adhere to the Synapse Community Standards of inclusion and respect.',
         description: "A participant in the Synapse Community: <ul>\n    <li>Welcomes others</li>\n    <li>Uses inclusive language</li>\n    <li>Shares experiences and knowledge</li>\n    <li>Respects other viewpoints and ideas</li>\n    <li>Shows empathy and kindness when interacting with others</li>\n    </ul>\nPlease refer to our full <a target=\"_blank\" href=\"https://help.synapse.org/docs/Governance-Overview.2009597114.html#GovernanceOverview-SynapseCodeofConduct\">Synapse Code of Conduct</a>.",
     },
     {
-        icon: lock_svg_1.ReactComponent,
+        icon: lock_svg_1.default,
         label: 'I will adhere to all conditions and use limitations, including privacy laws and regulations.',
         description: "For more information about how Sage Bionetworks regulates data access and privacy, please refer to the \n    <a target=\"_blank\" href=" + dataUseLink + ">Synapse Commons Data Use Procedure</a>."
     },
     {
-        icon: scale_svg_1.ReactComponent,
+        icon: scale_svg_1.default,
         label: 'I will act ethically and responsibly.',
         description: "You agree to the following Synapse Operating Ethics Principles, outlined in our \n    <a target=\"_blank\" href=" + termsLink + ">Terms and Conditions of Use</a>.\n    <br><br>Consequences of misconduct can include loss of both data use privileges and future use of Synapse."
     },
     {
-        icon: shield_svg_1.ReactComponent,
+        icon: shield_svg_1.default,
         label: 'I will use appropriate physical, technical and administrative measures to keep data secure and protect participants\' privacy.',
         description: "In your use of Synapse, you agree to:<ul>\n    <li>Keep your login information secure and not share with others.</li>\n    <li>Keep data safe from breach or misuse through appropriate security measures.</li>\n    <li>Not attempt to re-identify or contact participants.</li>\n    <li>Refrain from unauthorized data redistribution. Please refer to the \n    <a target=\"_blank\" href=" + dataUseLink + ">Synapse Commons Data Use Procedure</a>.</li>\n    </ul>\n    For more information, please refer to the full <a target=\"_blank\" href=" + termsLink + ">Synapse Terms and Conditions of Use</a>."
     },
     {
-        icon: people_svg_1.ReactComponent,
+        icon: people_svg_1.default,
         label: 'I will support open access best practices for public facing data.',
         description: "The Synapse open access platform promotes data accessibility and collaboration. We encourage you to \n    contribute your research findings to open access journals when applicable.<br><br>\n    You agree to support open access best practices when possible (e.g., sharing code, metadata, annotating files for discovery)."
     },
     {
-        icon: pen_svg_1.ReactComponent,
+        icon: pen_svg_1.default,
         label: 'I will credit research participants and all data sources.',
         description: "You agree to acknowledge data participants and to cite contributors and data sources using the language provided with the dataset.<br><br>\n    It is our policy to terminate the access privileges of those who infringe the intellectual property rights of others. For more information, please refer to our full \n    <a target=\"_blank\" href=" + termsLink + ">Terms and Conditions of Use</a>."
     },
     {
-        icon: speaker_svg_1.ReactComponent,
+        icon: speaker_svg_1.default,
         label: 'I will not use data for marketing and/or advertising.',
         description: "Data may not be used for marketing or advertising purposes. You agree not to upload or otherwise transmit \n    any unsolicited or unauthorized advertising, promotional materials, junk mail, spam, or any other form of solicitation (commercial or otherwise). <br><br>\n    Please review the <a target=\"_blank\" href=\"https://s3.amazonaws.com/static.synapse.org/governance/SynapsePrivacyPolicy.pdf?v=5\">Synapse Privacy Policy</a> for Sage's commitment to privacy protections."
     },
     {
-        icon: flag_svg_1.ReactComponent,
+        icon: flag_svg_1.default,
         label: "I will report any suspected data breach or misuse to privacyofficer@sagebase.org within 2 business days of initial incident knowledge.",
         description: "Data misuse includes violating dataset access requirements, unauthorized use or \n    redistribution, lack of data accreditation, and unethical data handling.<br><br>\n    For more information about what classifies as a violation of our data governance policies, please refer to our \n    <a target=\"_blank\" href=" + dataUseLink + ">Data Use Procedure</a> and <a target=\"_blank\" href=" + termsLink + ">Terms and Conditions of Use</a>."
     },

package/dist/containers/TermsAndConditions.js.map

@@ -1 +1 @@
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package/dist/containers/TermsAndConditionsItem.js

@@ -2,7 +2,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 var tslib_1 = require("tslib");
 var react_1 = (0, tslib_1.__importStar)(require("react"));
-var check_svg_1 = require("../assets/icons/terms/check.svg");
+var check_svg_1 = (0, tslib_1.__importDefault)(require("../assets/icons/terms/check.svg"));
 var TermsAndConditionsItem = function (props) {
     var id = props.id, item = props.item, enabled = props.enabled, checked = props.checked, onChange = props.onChange;
     var _a = (0, react_1.useState)(false), showDesc = _a[0], setShowDes = _a[1];
@@ -37,7 +37,7 @@ var TermsAndConditionsItem = function (props) {
                     react_1.default.createElement("a", { className: "terms-show-desc highlight-link", href: "", onClick: handleShowDescLink }, showDesc ? "Show Less" : "Show More"))),
         react_1.default.createElement("span", { className: "terms-checkbox" },
             react_1.default.createElement("span", { className: isChecked ? "terms-circle terms-checked" : "terms-circle", onClick: handleCheckboxClick },
-                react_1.default.createElement(check_svg_1.ReactComponent, null)),
+                react_1.default.createElement(check_svg_1.default, null)),
             "I agree")));
 };
 exports.default = TermsAndConditionsItem;

package/dist/containers/TermsAndConditionsItem.js.map

@@ -1 +1 @@
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+{"version":3,"file":"TermsAndConditionsItem.js","sourceRoot":"","sources":["../../src/lib/containers/TermsAndConditionsItem.tsx"],"names":[],"mappings":";;;AAAA,0DAAkD;AAClD,2FAAsD;AAgBtD,IAAM,sBAAsB,GAAyD,UAAA,KAAK;IAChF,IAAA,EAAE,GAAuC,KAAK,GAA5C,EAAE,IAAI,GAAiC,KAAK,KAAtC,EAAE,OAAO,GAAwB,KAAK,QAA7B,EAAE,OAAO,GAAe,KAAK,QAApB,EAAE,QAAQ,GAAK,KAAK,SAAV,CAAU;IAChD,IAAA,KAA2B,IAAA,gBAAQ,EAAU,KAAK,CAAC,EAAjD,QAAQ,QAAA,EAAE,UAAU,QAA6B,CAAA;IACnD,IAAA,KAA8B,IAAA,gBAAQ,EAAU,KAAK,CAAC,EAApD,SAAS,QAAA,EAAE,YAAY,QAA6B,CAAA;IAC5D,IAAI,OAAO,GAAG,IAAI,CAAA;IAElB,IAAA,iBAAS,EAAC;QACR,IAAI,OAAO,EAAE;YACX,YAAY,CAAC,OAAO,CAAC,CAAA;SACtB;QACD,OAAO;YACL,OAAO,GAAG,KAAK,CAAA;QACjB,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC,CAAA;IAEtB,IAAM,kBAAkB,GAAG,UAAC,CAAkB;QAC5C,CAAC,CAAC,cAAc,EAAE,CAAA;QAClB,IAAI,OAAO,EAAE;YACX,UAAU,CAAC,CAAC,QAAQ,CAAC,CAAA;SACtB;IACH,CAAC,CAAA;IAED,IAAM,mBAAmB,GAAG,UAAC,CAAkB;QAC7C,IAAI,OAAO,EAAE;YACX,QAAQ,CAAC,EAAE,CAAC,CAAA;SACb;IACH,CAAC,CAAA;IAED,OAAO,CACL;QACE,wCAAM,SAAS,EAAC,YAAY,IAAE,8BAAC,IAAI,CAAC,IAAI,OAAG,CAAQ;QACnD,wCAAM,SAAS,EAAC,YAAY;YAC1B,yCAAO,uBAAuB,EAAE,EAAE,MAAM,EAAE,IAAI,CAAC,KAAK,EAAE,GAAI;YACxD,QAAQ,IAAI,IAAI,CAAC,WAAW,IAAI,uCAAK,SAAS,EAAC,oBAAoB,EAAC,uBAAuB,EAAE,EAAE,MAAM,EAAE,IAAI,CAAC,WAAW,EAAE,GAAI;YAC7H,IAAI,CAAC,WAAW;gBAChB;oBACE,qCAAG,SAAS,EAAC,gCAAgC,EAAC,IAAI,EAAC,EAAE,EAAC,OAAO,EAAE,kBAAkB,IAAI,QAAQ,CAAC,CAAC,CAAE,WAAW,CAAC,CAAC,CAAC,WAAW,CAAM,CAC5H,CAEH;QACP,wCAAM,SAAS,EAAC,gBAAgB;YAC9B,wCAAM,SAAS,EAAE,SAAS,CAAC,CAAC,CAAC,4BAA4B,CAAC,CAAC,CAAC,cAAc,EAAG,OAAO,EAAE,mBAAmB;gBAAE,8BAAC,mBAAQ,OAAG,CAAO;sBAEzH,CACN,CACJ,CAAA;AACH,CAAC,CAAA;AAED,kBAAe,sBAAsB,CAAA"}

package/dist/containers/download_list_v2/AvailableForDownloadTable.d.ts

@@ -1,10 +1,7 @@
 /// <reference types="react" />
-import { FilesStatisticsResponse } from '../../utils/synapseTypes/DownloadListV2/QueryResponseDetails';
-export declare type AvailableForDownloadTableProps = {
-    filesStatistics: FilesStatisticsResponse;
-};
+import { DownloadListTableProps } from '../download_list_v2/DownloadListTable';
 /**
  * Table of the files added to the Download Cart that are currently available for download.
  * Note that this creates it's own QueryClient, so it's cache does not persist if you remount.
  */
-export default function AvailableForDownloadTable(props: AvailableForDownloadTableProps): JSX.Element;
+export default function AvailableForDownloadTable(props: DownloadListTableProps): JSX.Element;

package/dist/containers/download_list_v2/AvailableForDownloadTable.js

@@ -24,9 +24,7 @@ function AvailableForDownloadTable(props) {
         return react_1.default.createElement(react_1.default.Fragment, null);
     }
     return (react_1.default.createElement(react_query_1.QueryClientProvider, { client: queryClient },
-        react_1.default.createElement(ErrorBanner_1.SynapseErrorBoundary, null, props.filesStatistics && (
-        //SWC-5858: Update the Download List files table when the statistics change
-        react_1.default.createElement(DownloadListTable_1.default, { key: props.filesStatistics.totalNumberOfFiles })))));
+        react_1.default.createElement(ErrorBanner_1.SynapseErrorBoundary, null, props.filesStatistics && (react_1.default.createElement(DownloadListTable_1.default, (0, tslib_1.__assign)({}, props))))));
 }
 exports.default = AvailableForDownloadTable;
 //# sourceMappingURL=AvailableForDownloadTable.js.map

package/dist/containers/download_list_v2/AvailableForDownloadTable.js.map

@@ -1 +1 @@
-{"version":3,"file":"AvailableForDownloadTable.js","sourceRoot":"","sources":["../../../src/lib/containers/download_list_v2/AvailableForDownloadTable.tsx"],"names":[],"mappings":";;;AAAA,6DAAyB;AACzB,2CAA8D;AAC9D,6DAA8D;AAE9D,8CAAqD;AACrD,uFAAmD;AAMnD;;;GAGG;AACH,SAAwB,yBAAyB,CAAC,KAAqC;IAC7E,IAAA,WAAW,GAAK,IAAA,kCAAiB,GAAE,YAAxB,CAAwB;IAC3C,IAAM,WAAW,GAAG,IAAI,yBAAW,CAAC;QAClC,cAAc,EAAE;YACd,OAAO,EAAE;gBACP,SAAS,EAAE,EAAE,GAAG,IAAI;gBACpB,KAAK,EAAE,KAAK,EAAE,6CAA6C;aAC5D;SACF;KACF,CAAC,CAAA;IACF,IAAI,CAAC,WAAW,EAAE;QAChB,OAAO,6DAAK,CAAA;KACb;IACD,OAAO,CACL,8BAAC,iCAAmB,IAAC,MAAM,EAAE,WAAW;QACtC,8BAAC,kCAAoB,QAEjB,KAAK,CAAC,eAAe,IAAI;QACvB,2EAA2E;QAC3E,8BAAC,2BAAiB,IAAC,GAAG,EAAE,KAAK,CAAC,eAAe,CAAC,kBAAkB,GAAI,CACrE,CAEkB,CACH,CAEvB,CAAA;AACH,CAAC;AA1BD,4CA0BC"}
+{"version":3,"file":"AvailableForDownloadTable.js","sourceRoot":"","sources":["../../../src/lib/containers/download_list_v2/AvailableForDownloadTable.tsx"],"names":[],"mappings":";;;AAAA,6DAAyB;AACzB,2CAA8D;AAC9D,6DAA8D;AAE9D,8CAAqD;AACrD,uFAAmD;AAEnD;;;GAGG;AACH,SAAwB,yBAAyB,CAAC,KAA6B;IACrE,IAAA,WAAW,GAAK,IAAA,kCAAiB,GAAE,YAAxB,CAAwB;IAC3C,IAAM,WAAW,GAAG,IAAI,yBAAW,CAAC;QAClC,cAAc,EAAE;YACd,OAAO,EAAE;gBACP,SAAS,EAAE,EAAE,GAAG,IAAI;gBACpB,KAAK,EAAE,KAAK,EAAE,6CAA6C;aAC5D;SACF;KACF,CAAC,CAAA;IACF,IAAI,CAAC,WAAW,EAAE;QAChB,OAAO,6DAAK,CAAA;KACb;IACD,OAAO,CACL,8BAAC,iCAAmB,IAAC,MAAM,EAAE,WAAW;QACtC,8BAAC,kCAAoB,QAEjB,KAAK,CAAC,eAAe,IAAI,CACvB,8BAAC,2BAAiB,4BAAK,KAAK,EAAI,CACjC,CAEkB,CACH,CAEvB,CAAA;AACH,CAAC;AAzBD,4CAyBC"}

package/dist/containers/download_list_v2/DirectProgrammaticDownload.d.ts

@@ -0,0 +1,7 @@
+/// <reference types="react" />
+declare type DirectProgrammaticDownloadProps = {
+    entityId: string;
+    version?: number;
+};
+declare function DirectProgrammaticDownload({ entityId, version }: DirectProgrammaticDownloadProps): JSX.Element;
+export default DirectProgrammaticDownload;

package/dist/containers/download_list_v2/DirectProgrammaticDownload.js

@@ -0,0 +1,23 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+var tslib_1 = require("tslib");
+var react_1 = (0, tslib_1.__importStar)(require("react"));
+var react_tooltip_1 = (0, tslib_1.__importDefault)(require("react-tooltip"));
+var IconSvg_1 = (0, tslib_1.__importDefault)(require("../IconSvg"));
+var ProgrammaticInstructionsModal_1 = require("../ProgrammaticInstructionsModal");
+var SynapseTableConstants_1 = require("../table/SynapseTableConstants");
+function DirectProgrammaticDownload(_a) {
+    var entityId = _a.entityId, version = _a.version;
+    var _b = (0, react_1.useState)(false), isShowingModal = _b[0], setIsShowingModal = _b[1];
+    var rCode = "library(synapser)\nsynLogin('username','password')\n\n# Obtain a pointer and download the data\n" + entityId + " <- synGet(entity='" + entityId + "'" + (version ? ", version=" + version : '') + " ) ";
+    var pythonCode = "import synapseclient\n\nsyn = synapseclient.Synapse()\nsyn.login('synapse_username','password')\n\n# Obtain a pointer and download the data\n" + entityId + " = syn.get(entity='" + entityId + "'" + (version ? ", version=" + version : '') + " )\n\n# Get the path to the local copy of the data file\nfilepath = " + entityId + ".path";
+    var cliCode = "synapse get " + entityId + " " + (version ? "--version " + version : '');
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        react_1.default.createElement("span", { "data-for": entityId + "-direct-programmatic-download-tooltip", "data-tip": 'Programmatic download options' },
+            react_1.default.createElement(react_tooltip_1.default, { delayShow: SynapseTableConstants_1.TOOLTIP_DELAY_SHOW, place: "left", type: "dark", effect: "solid", id: entityId + "-direct-programmatic-download-tooltip" }),
+            react_1.default.createElement("button", { className: 'btn-download-icon', onClick: function () { return setIsShowingModal(true); } },
+                react_1.default.createElement(IconSvg_1.default, { options: { icon: 'code' } }))),
+        isShowingModal && react_1.default.createElement(ProgrammaticInstructionsModal_1.ProgrammaticInstructionsModal, { show: true, onClose: function () { return setIsShowingModal(false); }, title: 'Download Programmatically', cliCode: cliCode, rCode: rCode, pythonCode: pythonCode })));
+}
+exports.default = DirectProgrammaticDownload;
+//# sourceMappingURL=DirectProgrammaticDownload.js.map

package/dist/containers/download_list_v2/DirectProgrammaticDownload.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"DirectProgrammaticDownload.js","sourceRoot":"","sources":["../../../src/lib/containers/download_list_v2/DirectProgrammaticDownload.tsx"],"names":[],"mappings":";;;AAAA,0DAAuC;AACvC,6EAAwC;AACxC,oEAAgC;AAChC,kFAAgF;AAChF,wEAAmE;AAOnE,SAAS,0BAA0B,CAAC,EAGF;QAFhC,QAAQ,cAAA,EACR,OAAO,aAAA;IAED,IAAA,KAAsC,IAAA,gBAAQ,EAAU,KAAK,CAAC,EAA7D,cAAc,QAAA,EAAE,iBAAiB,QAA4B,CAAA;IAEpE,IAAM,KAAK,GAAG,qGAId,QAAQ,2BAAsB,QAAQ,UAAI,OAAO,CAAC,CAAC,CAAC,eAAa,OAAS,CAAC,CAAC,CAAC,EAAE,SAAK,CAAA;IAEpF,IAAM,UAAU,GAAG,kJAMnB,QAAQ,2BAAsB,QAAQ,UAAI,OAAO,CAAC,CAAC,CAAC,eAAa,OAAS,CAAC,CAAC,CAAC,EAAE,6EAGpE,QAAQ,UAAO,CAAA;IAE1B,IAAM,OAAO,GAAG,iBAAe,QAAQ,UAAI,OAAO,CAAC,CAAC,CAAC,eAAa,OAAS,CAAC,CAAC,CAAC,EAAE,CAAE,CAAA;IAElF,OAAO,CACL;QACE,oDACiB,QAAQ,0CAAuC,cACnD,+BAA+B;YAC1C,8BAAC,uBAAY,IACX,SAAS,EAAE,0CAAkB,EAC7B,KAAK,EAAC,MAAM,EACZ,IAAI,EAAC,MAAM,EACX,MAAM,EAAC,OAAO,EACd,EAAE,EAAK,QAAQ,0CAAuC,GACtD;YACF,0CAAQ,SAAS,EAAE,mBAAmB,EAAE,OAAO,EAAE,cAAM,OAAA,iBAAiB,CAAC,IAAI,CAAC,EAAvB,CAAuB;gBAC5E,8BAAC,iBAAO,IAAC,OAAO,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,GAAI,CAC/B,CACJ;QACN,cAAc,IAAI,8BAAC,6DAA6B,IAC/C,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,cAAM,OAAA,iBAAiB,CAAC,KAAK,CAAC,EAAxB,CAAwB,EACvC,KAAK,EAAC,2BAA2B,EACjC,OAAO,EAAE,OAAO,EAChB,KAAK,EAAE,KAAK,EACZ,UAAU,EAAE,UAAU,GACtB,CACD,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,0BAA0B,CAAA"}

package/dist/containers/download_list_v2/DownloadCartPage.js

@@ -17,7 +17,7 @@ var ErrorBanner_1 = require("../ErrorBanner");
 var ErrorUtils_1 = require("../../utils/ErrorUtils");
 var Typography_1 = (0, tslib_1.__importDefault)(require("../../utils/typography/Typography"));
 var react_tooltip_1 = (0, tslib_1.__importDefault)(require("react-tooltip"));
-var MarkdownPopover_1 = require("../MarkdownPopover");
+var HelpPopover_1 = require("../HelpPopover");
 /**
  * Show the Download Cart page.
  */
@@ -96,43 +96,42 @@ var DownloadCartPage = function () {
             React.createElement("div", null,
                 data.numberOfFilesAvailableForDownload > 0 &&
                     React.createElement("div", { className: "DownloadListTabContent" },
-                        React.createElement("div", { className: "subSectionOverview" },
-                            React.createElement("div", null,
-                                React.createElement("div", { className: "headlineWithHelp" },
-                                    React.createElement(Typography_1.default, { variant: 'headline3' },
-                                        React.createElement(IconSvg_1.default, { options: { icon: 'packagableFile' } }),
-                                        " Web Download (.ZIP Packages)"),
-                                    React.createElement(MarkdownPopover_1.MarkdownPopover, { contentProps: { markdown: 'This will allow you to create a .zip file that contains eligible files. Files greater that 100 MB, external links, or files which are not stored on Synapse native storage are ineligible. In most cases, ineligible files can be downloaded individually. External links will require navigation to an external site, which may require a seperate login process.' }, placement: "bottom" },
-                                        React.createElement(IconSvg_1.default, { options: { icon: 'info' } }))),
-                                React.createElement(Typography_1.default, { variant: 'body1' },
-                                    React.createElement("ul", null,
-                                        React.createElement("li", null, "Eligible files will be added to .ZIP packages of up to 1GB in size"),
-                                        React.createElement("li", null, "If you have more than 1GB, you can create multiple packages"),
-                                        React.createElement("li", null, "Will only include files which are hosted on Synapse native storage"),
-                                        React.createElement("li", null, "Packages include a CSV Manifest containing Metadata for each file"))),
-                                React.createElement("span", null,
-                                    data.numberOfFilesAvailableForDownloadAndEligibleForPackaging > 0 && React.createElement("a", { className: "highlight-link", onClick: function () { setIsShowingCreatePackageUI(true); } }, "Download As .Zip Packages"),
-                                    data.numberOfFilesAvailableForDownloadAndEligibleForPackaging == 0 &&
-                                        React.createElement("a", { className: "highlight-link disabled", "data-for": "downloadZipPackagesUnavailable", "data-tip": "You cannot create a .zip package<br />because there are no eligible files." },
-                                            React.createElement(react_tooltip_1.default, { delayShow: 300, multiline: true, place: "top", type: "dark", effect: "solid", id: "downloadZipPackagesUnavailable" }),
-                                            "Download As .ZIP packages"))),
-                            React.createElement("div", null,
-                                React.createElement("div", { className: "headlineWithHelp" },
-                                    React.createElement(Typography_1.default, { variant: 'headline3' },
-                                        React.createElement(IconSvg_1.default, { options: { icon: 'code' } }),
-                                        " Programmatic Download"),
-                                    React.createElement(MarkdownPopover_1.MarkdownPopover, { contentProps: { markdown: 'This will provide syntax which you can enter into your programmatic client. It is suitable for large files (>100 MB), for packages > 1GB, and for files which aren’t stored on Synapse native storage (e.g. in a special AWS S3 or Google Cloud bucket.  External links will require navigation to an external site, which may require a separate login process.' }, placement: "bottom" },
-                                        React.createElement(IconSvg_1.default, { options: { icon: 'info' } }))),
-                                React.createElement(Typography_1.default, { variant: 'body1' },
-                                    React.createElement("ul", null,
-                                        React.createElement("li", null, "Requires installation of a programmatic client (R, Python, CLI)"),
-                                        React.createElement("li", null, "No limit to the file size or number of files that can be downloaded"),
-                                        React.createElement("li", null, "Will include files which are hosted on and off Synapse native storage"),
-                                        React.createElement("li", null, "Packages include a CSV Manifest containing Metadata for each file"))),
-                                React.createElement("span", null,
-                                    React.createElement("a", { className: "highlight-link disabled", "data-for": "downloadProgrammaticallyTooltipId", "data-tip": "This feature is coming soon.<br />You can still download individual<br />files programmatically." },
-                                        React.createElement(react_tooltip_1.default, { delayShow: 300, multiline: true, place: "top", type: "dark", effect: "solid", id: "downloadProgrammaticallyTooltipId" }),
-                                        "Download Programmatically (Coming Soon)")))),
+                        React.createElement("div", { className: "subSectionOverviewContainer" },
+                            React.createElement("div", { className: "subSectionOverview container" },
+                                React.createElement("div", null,
+                                    React.createElement("div", { className: "headlineWithHelp" },
+                                        React.createElement(Typography_1.default, { variant: 'headline3' },
+                                            React.createElement(IconSvg_1.default, { options: { icon: 'packagableFile' } }),
+                                            " Web Download (.ZIP Packages)"),
+                                        React.createElement(HelpPopover_1.HelpPopover, { markdownText: 'This will allow you to create a .zip file that contains eligible files. Files greater that 100 MB, external links, or files which are not stored on Synapse native storage are ineligible. In most cases, ineligible files can be downloaded individually. External links will require navigation to an external site, which may require a seperate login process.' })),
+                                    React.createElement(Typography_1.default, { variant: 'body1' },
+                                        React.createElement("ul", null,
+                                            React.createElement("li", null, "Eligible files will be added to .ZIP packages of up to 1GB in size"),
+                                            React.createElement("li", null, "If you have more than 1GB, you can create multiple packages"),
+                                            React.createElement("li", null, "Will only include files which are hosted on Synapse native storage"),
+                                            React.createElement("li", null, "Packages include a CSV Manifest containing Metadata for each file"))),
+                                    React.createElement("span", null,
+                                        data.numberOfFilesAvailableForDownloadAndEligibleForPackaging > 0 && React.createElement("a", { className: "highlight-link", onClick: function () { setIsShowingCreatePackageUI(true); } }, "Download As .Zip Packages"),
+                                        data.numberOfFilesAvailableForDownloadAndEligibleForPackaging == 0 &&
+                                            React.createElement("a", { className: "highlight-link disabled", "data-for": "downloadZipPackagesUnavailable", "data-tip": "You cannot create a .zip package<br />because there are no eligible files." },
+                                                React.createElement(react_tooltip_1.default, { delayShow: 300, multiline: true, place: "top", type: "dark", effect: "solid", id: "downloadZipPackagesUnavailable" }),
+                                                "Download As .ZIP packages"))),
+                                React.createElement("div", null,
+                                    React.createElement("div", { className: "headlineWithHelp" },
+                                        React.createElement(Typography_1.default, { variant: 'headline3' },
+                                            React.createElement(IconSvg_1.default, { options: { icon: 'code' } }),
+                                            " Programmatic Download"),
+                                        React.createElement(HelpPopover_1.HelpPopover, { markdownText: 'This will provide syntax which you can enter into your programmatic client. It is suitable for large files (>100 MB), for packages > 1GB, and for files which aren\u2019t stored on Synapse native storage (e.g. in a special AWS S3 or Google Cloud bucket.  External links will require navigation to an external site, which may require a separate login process.' })),
+                                    React.createElement(Typography_1.default, { variant: 'body1' },
+                                        React.createElement("ul", null,
+                                            React.createElement("li", null, "Requires installation of a programmatic client (R, Python, CLI)"),
+                                            React.createElement("li", null, "No limit to the file size or number of files that can be downloaded"),
+                                            React.createElement("li", null, "Will include files which are hosted on and off Synapse native storage"),
+                                            React.createElement("li", null, "Packages include a CSV Manifest containing Metadata for each file"))),
+                                    React.createElement("span", null,
+                                        React.createElement("a", { className: "highlight-link disabled", "data-for": "downloadProgrammaticallyTooltipId", "data-tip": "This feature is coming soon.<br />You can still download individual<br />files programmatically." },
+                                            React.createElement(react_tooltip_1.default, { delayShow: 300, multiline: true, place: "top", type: "dark", effect: "solid", id: "downloadProgrammaticallyTooltipId" }),
+                                            "Download Programmatically (Coming Soon)"))))),
                         React.createElement("div", { className: "availableForDownloadTableContainer container" },
                             isShowingCreatePackageUI && React.createElement(CreatePackageV2_1.CreatePackageV2, { onPackageCreation: function () {
                                     setIsShowingDownloadSuccessAlert(true);
@@ -140,7 +139,7 @@ var DownloadCartPage = function () {
                                     refetch();
                                 } }),
                             React.createElement(DownloadListStats_1.default, { numBytes: data.sumOfFileSizesAvailableForDownload, numPackagableFiles: data.numberOfFilesAvailableForDownloadAndEligibleForPackaging, numFiles: data.numberOfFilesAvailableForDownload }),
-                            React.createElement(AvailableForDownloadTable_1.default, { filesStatistics: data }))),
+                            refetch && React.createElement(AvailableForDownloadTable_1.default, { filesStatistics: data, refetchStatistics: refetch }))),
                 data.numberOfFilesAvailableForDownload === 0 && React.createElement("div", { className: "placeholder" },
                     React.createElement("div", null, "Your Download List is currently empty."))),
         React.createElement(FullWidthAlert_1.default, { show: isShowingDownloadSuccessAlert, variant: 'success', title: 'Package Created', description: 'A package has been created with eligible files. The items contained in this .zip file have been removed from your list. If your package is over 1GB, you will need to create multiple packages.', autoCloseAfterDelayInSeconds: 10, onClose: function () { setIsShowingDownloadSuccessAlert(false); } })));

package/dist/containers/download_list_v2/DownloadCartPage.js.map

@@ -1 +1 @@
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package/dist/containers/download_list_v2/DownloadListTable.d.ts

@@ -1,4 +1,9 @@
 /// <reference types="react" />
+import { FilesStatisticsResponse } from '../../utils/synapseTypes/DownloadListV2/QueryResponseDetails';
 export declare const TESTING_TRASH_BTN_CLASS = "TESTING_TRASH_BTN_CLASS";
 export declare const TESTING_CLEAR_BTN_CLASS = "TESTING_CLEAR_BTN_CLASS";
-export default function DownloadListTable(): JSX.Element;
+export declare type DownloadListTableProps = {
+    filesStatistics: FilesStatisticsResponse;
+    refetchStatistics: () => Promise<any>;
+};
+export default function DownloadListTable(props: DownloadListTableProps): JSX.Element;

package/dist/containers/download_list_v2/DownloadListTable.js

@@ -22,11 +22,13 @@ var SynapseTableConstants_1 = require("../table/SynapseTableConstants");
 var SkeletonTable_1 = require("../../assets/skeletons/SkeletonTable");
 var DirectDownload_1 = (0, tslib_1.__importDefault)(require("../DirectDownload"));
 var ToastMessage_1 = require("../ToastMessage");
+var DirectProgrammaticDownload_1 = (0, tslib_1.__importDefault)(require("./DirectProgrammaticDownload"));
 exports.TESTING_TRASH_BTN_CLASS = 'TESTING_TRASH_BTN_CLASS';
 exports.TESTING_CLEAR_BTN_CLASS = 'TESTING_CLEAR_BTN_CLASS';
-function DownloadListTable() {
+function DownloadListTable(props) {
     var _this = this;
     var _a;
+    var filesStatistics = props.filesStatistics, refetchStatistics = props.refetchStatistics;
     var accessToken = (0, SynapseContext_1.useSynapseContext)().accessToken;
     var handleError = (0, react_error_boundary_1.useErrorHandler)();
     // Load the next page when this ref comes into view.
@@ -34,6 +36,12 @@ function DownloadListTable() {
     var _c = (0, react_1.useState)(undefined), sort = _c[0], setSort = _c[1];
     var _d = (0, react_1.useState)(undefined), filter = _d[0], setFilter = _d[1];
     var _e = (0, useGetAvailableFilesToDownload_1.useGetAvailableFilesToDownloadInfinite)(sort, filter), data = _e.data, status = _e.status, isFetchingNextPage = _e.isFetchingNextPage, isLoading = _e.isLoading, hasNextPage = _e.hasNextPage, fetchNextPage = _e.fetchNextPage, isError = _e.isError, newError = _e.error, refetch = _e.refetch;
+    //SWC-5858: Update the Download List files table when the statistics change
+    (0, react_1.useEffect)(function () {
+        if (refetch) {
+            refetch();
+        }
+    }, [filesStatistics, refetch]);
     (0, react_1.useEffect)(function () {
         if (isError && newError) {
             handleError((0, ErrorUtils_1.toError)(newError));
@@ -60,7 +68,7 @@ function DownloadListTable() {
             return 'Only Ineligible';
         }
     };
-    var removeItem = function (item) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+    var removeItem = function (item, fileName, title) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
         var err_1;
         return (0, tslib_1.__generator)(this, function (_a) {
             switch (_a.label) {
@@ -69,7 +77,10 @@ function DownloadListTable() {
                     return [4 /*yield*/, utils_1.SynapseClient.removeItemFromDownloadListV2(item, accessToken)];
                 case 1:
                     _a.sent();
+                    (0, ToastMessage_1.displayToast)(fileName + " has been removed from your list.", 'success', { title: title });
+                    // refetching the statistics will update the download list, but refresh the list immediately since this will take time
                     refetch();
+                    refetchStatistics();
                     return [3 /*break*/, 3];
                 case 2:
                     err_1 = _a.sent();
@@ -120,12 +131,12 @@ function DownloadListTable() {
                         react_1.default.createElement("th", null,
                             "Size",
                             react_1.default.createElement("span", null, showInteractiveSortIcon('fileSize'))),
-                        react_1.default.createElement("th", null,
-                            "Project",
-                            react_1.default.createElement("span", null, showInteractiveSortIcon('projectName'))),
                         react_1.default.createElement("th", null,
                             "SynID",
                             react_1.default.createElement("span", null, showInteractiveSortIcon('synId'))),
+                        react_1.default.createElement("th", null,
+                            "Project",
+                            react_1.default.createElement("span", null, showInteractiveSortIcon('projectName'))),
                         react_1.default.createElement("th", null,
                             "Added On",
                             react_1.default.createElement("span", null, showInteractiveSortIcon('addedOn'))),
@@ -157,8 +168,8 @@ function DownloadListTable() {
                                     react_1.default.createElement("a", { target: "_blank", rel: "noopener noreferrer", href: getEndpoint_1.PRODUCTION_ENDPOINT_CONFIG.PORTAL + "#!Synapse:" + item.fileEntityId + "." + item.versionNumber }, item.fileName)),
                                 react_1.default.createElement("td", null, item.fileSizeBytes &&
                                     (0, calculateFriendlyFileSize_1.calculateFriendlyFileSize)(item.fileSizeBytes)),
+                                react_1.default.createElement("td", null, item.fileEntityId),
                                 react_1.default.createElement("td", null, item.projectName),
-                                react_1.default.createElement("td", null, item.projectId),
                                 react_1.default.createElement("td", null, addedOn),
                                 react_1.default.createElement("td", null,
                                     react_1.default.createElement(UserCard_1.default, { size: 'SMALL USER CARD', ownerId: item.createdBy })),
@@ -170,16 +181,17 @@ function DownloadListTable() {
                                                     removeItem({
                                                         fileEntityId: item.fileEntityId,
                                                         versionNumber: item.versionNumber,
-                                                    });
-                                                    (0, ToastMessage_1.displayToast)(item.fileName + " has been removed from your list.", 'success', { title: 'File Download' });
+                                                    }, item.fileName, 'File Downloaded');
                                                 } })),
+                                        react_1.default.createElement("span", { className: "programmaticAccessItem" },
+                                            react_1.default.createElement(DirectProgrammaticDownload_1.default, { entityId: item.fileEntityId, version: item.versionNumber })),
                                         react_1.default.createElement("span", { className: "removeItem", "data-for": item.fileEntityId + "-removeitem-tooltip", "data-tip": "Remove from Download List" },
                                             react_1.default.createElement(react_tooltip_1.default, { delayShow: SynapseTableConstants_1.TOOLTIP_DELAY_SHOW, place: "left", type: "dark", effect: "solid", id: item.fileEntityId + "-removeitem-tooltip" }),
                                             react_1.default.createElement("button", { className: exports.TESTING_TRASH_BTN_CLASS, onClick: function () {
                                                     removeItem({
                                                         fileEntityId: item.fileEntityId,
                                                         versionNumber: item.versionNumber,
-                                                    });
+                                                    }, item.fileName, 'File Removed');
                                                 } },
                                                 react_1.default.createElement(IconSvg_1.default, { options: {
                                                         icon: 'removeCircle',

package/dist/containers/download_list_v2/DownloadListTable.js.map

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package/dist/containers/entity_finder/EntityFinderModal.d.ts

@@ -1,7 +1,7 @@
 /// <reference types="react" />
 import { Reference } from '../../utils/synapseTypes';
 import { EntityFinderProps } from './EntityFinder';
-declare type EntityFinderModalProps = {
+export declare type EntityFinderModalProps = {
     configuration: Omit<EntityFinderProps, 'onSelectedChange'>;
     show: boolean;
     onClose: () => void;
@@ -11,4 +11,3 @@ declare type EntityFinderModalProps = {
     onCancel: () => void;
 };
 export declare const EntityFinderModal: (props: EntityFinderModalProps) => JSX.Element;
-export {};

package/dist/containers/entity_finder/details/view/DetailsView.js

@@ -11,13 +11,12 @@ var SynapseClient_1 = require("../../../../utils/SynapseClient");
 var SynapseContext_1 = require("../../../../utils/SynapseContext");
 var synapseTypes_1 = require("../../../../utils/synapseTypes");
 var EntityBadgeIcons_1 = require("../../../EntityBadgeIcons");
-var MarkdownPopover_1 = require("../../../MarkdownPopover");
 var LoadingScreen_1 = require("../../../LoadingScreen");
 var Checkbox_1 = require("../../../widgets/Checkbox");
 var EntityFinder_1 = require("../../EntityFinder");
 var DetailsViewTableRenderers_1 = require("./DetailsViewTableRenderers");
-var icons_1 = require("@material-ui/icons");
 var TooltipUtils_1 = require("../../../../utils/functions/TooltipUtils");
+var HelpPopover_1 = require("../../../HelpPopover");
 var MIN_TABLE_WIDTH = 1200;
 var ROW_HEIGHT = 46;
 /**
@@ -267,10 +266,7 @@ var DetailsView = function (_a) {
                 showVersionSelection && (react_1.default.createElement(react_base_table_1.Column, { key: "version", minWidth: 150, width: 500, title: "Version", cellRenderer: function (props) { return (react_1.default.createElement(DetailsViewTableRenderers_1.DetailsViewVersionRenderer, (0, tslib_1.__assign)({ mustSelectVersionNumber: mustSelectVersionNumber, toggleSelection: toggleSelection }, props))); }, headerRenderer: function () {
                         return (react_1.default.createElement(react_1.default.Fragment, null,
                             "Version",
-                            react_1.default.createElement(MarkdownPopover_1.MarkdownPopover, { contentProps: {
-                                    markdown: 'Allows you to choose which version of this item you would like to perform this action on. If you would like the selected reference to update as new versions are created, choose “Always Latest Version”',
-                                }, showCloseButton: false, placement: "right", strategy: "fixed", style: { maxWidth: '350px' } },
-                                react_1.default.createElement(icons_1.HelpOutline, { className: "HelpButton", style: { cursor: 'pointer' } }))));
+                            react_1.default.createElement(HelpPopover_1.HelpPopover, { markdownText: 'Allows you to choose which version of this item you would like to perform this action on. If you would like the selected reference to update as new versions are created, choose \u201CAlways Latest Version\u201D', placement: "right" })));
                     } })),
                 react_1.default.createElement(react_base_table_1.Column, { key: synapseTypes_1.SortBy.CREATED_ON, sortable: sort != null, title: "Created On", width: 200, minWidth: 150, cellRenderer: DetailsViewTableRenderers_1.CreatedOnRenderer }),
                 react_1.default.createElement(react_base_table_1.Column, { key: synapseTypes_1.SortBy.MODIFIED_ON, title: "Modified On", width: 200, minWidth: 150, sortable: sort != null, cellRenderer: DetailsViewTableRenderers_1.ModifiedOnRenderer }),

package/dist/containers/entity_finder/details/view/DetailsView.js.map

@@ -1 +1 @@
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