npm - synapse-react-client - Versions diffs - 2.0.59 → 2.0.63 - Mend

synapse-react-client 2.0.59 → 2.0.63

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (77) hide show

package/dist/containers/table/datasets/DatasetItemsEditor.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { DatasetItem } from '../../../utils/synapseTypes';
-declare type DatasetItemsEditorProps = {
+export declare type DatasetItemsEditorProps = {
     entityId: string;
     onSave?: () => void;
     onClose?: () => void;
@@ -10,4 +10,3 @@ export declare type DatasetItemsEditorTableData = DatasetItem & {
     setSelected: (value: boolean) => void;
 };
 export declare function DatasetItemsEditor(props: DatasetItemsEditorProps): JSX.Element;
-export {};

package/dist/containers/table/datasets/DatasetItemsEditor.js CHANGED Viewed

@@ -22,7 +22,6 @@ var IconSvg_1 = (0, tslib_1.__importDefault)(require("../../IconSvg"));
 var WarningModal_1 = (0, tslib_1.__importDefault)(require("../../synapse_form_wrapper/WarningModal"));
 var ToastMessage_1 = require("../../ToastMessage");
 var Checkbox_1 = require("../../widgets/Checkbox");
-var DATASET_MAX_ITEM_LIMIT = 20000;
 var ROW_HEIGHT = 42;
 var TABLE_HEIGHT = 350;
 function DatasetItemsEditor(props) {
@@ -41,6 +40,10 @@ function DatasetItemsEditor(props) {
     var refetch = (0, useEntity_1.useGetEntity)(entityId, undefined, {
         enabled: !datasetToUpdate,
         onSuccess: function (dataset) {
+            // SWC-5876: Dataset Items may be undefined. This has the same inherent meaning as the empty list, so we'll just change it to save us some null checks.
+            if (dataset.items == null) {
+                dataset.items = [];
+            }
             setDatasetToUpdate(dataset);
             setHasChangedSinceLastSave(false);
         },
@@ -88,7 +91,7 @@ function DatasetItemsEditor(props) {
                 return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, datasetToUpdate), { items: items });
             }
             else {
-                console.warn('Cannot add items to the Dataset because is undefined. The Dataset may not have been fetched yet.');
+                console.warn('Cannot add items to the Dataset because it is undefined. The Dataset may not have been fetched yet.');
                 return datasetToUpdate;
             }
         });
@@ -138,7 +141,7 @@ function DatasetItemsEditor(props) {
             width: 40,
             dataKey: 'isSelected',
             headerRenderer: renderedSelectAllCheckbox,
-            cellRenderer: DetailsViewTableRenderers_1.CheckboxRenderer,
+            cellRenderer: DetailsViewTableRenderers_1.DatasetEditorCheckboxRenderer,
         },
         {
             key: 'name',
@@ -222,8 +225,9 @@ function DatasetItemsEditor(props) {
                 addItemsToDataset(items);
                 setShowEntityFinder(false);
             }, onCancel: function () { return setShowEntityFinder(false); } }),
-        react_1.default.createElement(WarningModal_1.default, { title: "Unsaved Changes", modalBody: "Any unsaved changes will be lost. Are you sure you want to close the editor?", confirmButtonText: "OK", onConfirm: function () {
+        react_1.default.createElement(WarningModal_1.default, { title: "Unsaved Changes", modalBody: "Any unsaved changes will be lost. Are you sure you want to close the editor?", confirmButtonText: "Close Editor", onConfirm: function () {
                 if (onClose) {
+                    setShowWarningModal(false);
                     onClose();
                 }
             }, show: showWarningModal, onConfirmCallbackArgs: [], onCancel: function () { return setShowWarningModal(false); } }),
@@ -235,7 +239,7 @@ function DatasetItemsEditor(props) {
                 ' ',
                 "File",
                 datasetToUpdate.items.length !== 1 && 's')) : (react_1.default.createElement(lab_1.Skeleton, { variant: "rect", width: 200 }))),
-            react_1.default.createElement(react_bootstrap_1.Button, { variant: "outline", disabled: selectedIds.size === DATASET_MAX_ITEM_LIMIT, onClick: function () { return setShowEntityFinder(true); } }, "Add Items"),
+            react_1.default.createElement(react_bootstrap_1.Button, { variant: "outline", disabled: datasetToUpdate == null, onClick: function () { return setShowEntityFinder(true); } }, "Add Items"),
             react_1.default.createElement(react_bootstrap_1.Button, { disabled: selectedIds.size === 0, variant: "outline", onClick: removeSelectedItemsFromDataset }, "Remove Items")),
         react_1.default.createElement("div", { className: "DatasetEditorTableContainer" },
             datasetToUpdate ? (datasetToUpdate.items.length === 0 ? (react_1.default.createElement(NoItemsPlaceholder, null)) : (react_1.default.createElement(react_base_table_1.default, { classPrefix: "DatasetEditorTable", data: tableData, height: TABLE_HEIGHT, width: defaultColumns.reduce(function (totalWidth, column) {

package/dist/containers/table/datasets/DatasetItemsEditor.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/containers/table/table-top/DownloadOptions.js CHANGED Viewed

@@ -6,7 +6,7 @@ var DownloadLoginModal_1 = require("./DownloadLoginModal");
 var React = (0, tslib_1.__importStar)(require("react"));
 var react_bootstrap_1 = require("react-bootstrap");
 var ElementWithTooltip_1 = require("../../widgets/ElementWithTooltip");
-var ProgrammaticOptions_1 = (0, tslib_1.__importDefault)(require("./ProgrammaticOptions"));
+var ProgrammaticTableDownload_1 = (0, tslib_1.__importDefault)(require("./ProgrammaticTableDownload"));
 var ModalDownload_1 = (0, tslib_1.__importDefault)(require("../../../containers/ModalDownload"));
 var SynapseContext_1 = require("../../../utils/SynapseContext");
 exports.DOWNLOAD_OPTIONS_CONTAINER_CLASS = 'SRC-download-options-container';
@@ -36,7 +36,7 @@ var DownloadOptions = function (props) {
         showLoginModal && (React.createElement(DownloadLoginModal_1.DownloadLoginModal, { showModal: showLoginModal, onHide: function () { return setShowLoginModal(false); } })),
         // modal can render anywhere, this is not a particular location
         showExportMetadata && (React.createElement(ModalDownload_1.default, { onClose: function () { return setShowExportMetadata(false); }, queryBundleRequest: queryBundleRequest })),
-        showProgrammaticOptions && queryResultBundle && (React.createElement(ProgrammaticOptions_1.default, { onHide: function () { return setShowProgrammaticOptions(false); }, queryBundleRequest: queryBundleRequest, queryResultBundle: queryResultBundle }))));
+        showProgrammaticOptions && queryResultBundle && (React.createElement(ProgrammaticTableDownload_1.default, { onHide: function () { return setShowProgrammaticOptions(false); }, queryBundleRequest: queryBundleRequest, queryResultBundle: queryResultBundle }))));
 };
 exports.DownloadOptions = DownloadOptions;
 //# sourceMappingURL=DownloadOptions.js.map

package/dist/containers/table/table-top/DownloadOptions.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/containers/table/table-top/{ProgrammaticOptions.d.ts → ProgrammaticTableDownload.d.ts} RENAMED Viewed

@@ -1,10 +1,5 @@
 /// <reference types="react" />
 import { QueryBundleRequest, QueryResultBundle } from '../../../utils/synapseTypes';
-export declare enum ProgrammaticOptionsTabs {
-    COMMAND_LINE = "Command Line",
-    R = "R",
-    PYTHON = "Python"
-}
 declare type ProgrammaticOptionsProps = {
     queryBundleRequest: QueryBundleRequest;
     queryResultBundle: QueryResultBundle;

package/dist/containers/table/table-top/ProgrammaticTableDownload.js ADDED Viewed

@@ -0,0 +1,64 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+var tslib_1 = require("tslib");
+var react_1 = (0, tslib_1.__importStar)(require("react"));
+var use_deep_compare_effect_1 = (0, tslib_1.__importDefault)(require("use-deep-compare-effect"));
+var SynapseClient_1 = require("../../../utils/SynapseClient");
+var ProgrammaticInstructionsModal_1 = require("../../ProgrammaticInstructionsModal");
+function ProgrammaticOptions(_a) {
+    var _this = this;
+    var queryBundleRequest = _a.queryBundleRequest, queryResultBundle = _a.queryResultBundle, onHide = _a.onHide;
+    var _b = (0, react_1.useState)(''), generatedSql = _b[0], setGeneratedSql = _b[1];
+    (0, use_deep_compare_effect_1.default)(function () {
+        var getData = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+            var query, sql, _a, selectedFacets, columnModels, transformSqlWithFacetsRequest, res, indexOfFrom, selectStarTransformedSql, e_1;
+            return (0, tslib_1.__generator)(this, function (_b) {
+                switch (_b.label) {
+                    case 0:
+                        query = queryBundleRequest.query;
+                        sql = query.sql, _a = query.selectedFacets, selectedFacets = _a === void 0 ? [] : _a;
+                        columnModels = queryResultBundle.columnModels;
+                        if (!columnModels) {
+                            console.error('Column Models must be included to complete transform sql request');
+                        }
+                        transformSqlWithFacetsRequest = {
+                            concreteType: 'org.sagebionetworks.repo.model.table.TransformSqlWithFacetsRequest',
+                            sqlToTransform: sql,
+                            selectedFacets: selectedFacets,
+                            schema: columnModels,
+                        };
+                        _b.label = 1;
+                    case 1:
+                        _b.trys.push([1, 3, , 4]);
+                        return [4 /*yield*/, (0, SynapseClient_1.getTransformSqlWithFacetsRequest)(transformSqlWithFacetsRequest)
+                            // SWC-5686: The ID column is required by the client, and this column may not have been selected!
+                            // Change the SQL to "SELECT * ..."
+                        ];
+                    case 2:
+                        res = _b.sent();
+                        indexOfFrom = res.transformedSql.toUpperCase().indexOf('FROM SYN');
+                        selectStarTransformedSql = "SELECT * " + res.transformedSql.substring(indexOfFrom);
+                        setGeneratedSql(selectStarTransformedSql.replace(/"/g, '\\"'));
+                        return [3 /*break*/, 4];
+                    case 3:
+                        e_1 = _b.sent();
+                        console.error('Error on getTransformSqlWithFacetsRequest ', e_1);
+                        return [3 /*break*/, 4];
+                    case 4: return [2 /*return*/];
+                }
+            });
+        }); };
+        getData();
+    }, [queryBundleRequest, queryResultBundle]);
+    return (react_1.default.createElement(ProgrammaticInstructionsModal_1.ProgrammaticInstructionsModal, { show: true, onClose: onHide, title: 'Download Programmatically', cliNotes: react_1.default.createElement(react_1.default.Fragment, null, "This command line code will download Synapse files AND file annotations to your working directory."), cliCode: "synapse get -q \"" + generatedSql + "\"", rNotes: react_1.default.createElement(react_1.default.Fragment, null,
+            "This R code will download file annotations only. Use ",
+            react_1.default.createElement("a", { target: '_blank', rel: 'noopener noreferrer', href: 'https://help.synapse.org/docs/Get-Started-with-Downloading-Data.2004254837.html#GetStartedwithDownloadingData-DownloadingFiles' },
+                "synGet",
+                '()'),
+            " to loop over the list of Synapse IDs from the file annotations to download files."), rCode: "query " + '<-' + " synTableQuery(\"" + generatedSql + "\")" + '\n' + "read.table(query$filepath, sep = \",\")", pythonNotes: react_1.default.createElement(react_1.default.Fragment, null,
+            "This Python code will download file annotations only. Use ",
+            react_1.default.createElement("a", { target: '_blank', rel: 'noopener noreferrer', href: 'https://help.synapse.org/docs/Get-Started-with-Downloading-Data.2004254837.html#GetStartedwithDownloadingData-DownloadingFiles' }, "syn.get"),
+            " to loop over the list of Synapse IDs from the file annotations to download files."), pythonCode: "query = syn.tableQuery(\"" + generatedSql + "\")" + '\n' + "query.asDataFrame()" }));
+}
+exports.default = ProgrammaticOptions;
+//# sourceMappingURL=ProgrammaticTableDownload.js.map

package/dist/containers/table/table-top/ProgrammaticTableDownload.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"ProgrammaticTableDownload.js","sourceRoot":"","sources":["../../../../src/lib/containers/table/table-top/ProgrammaticTableDownload.tsx"],"names":[],"mappings":";;;AAAA,0DAAuC;AAMvC,iGAA0D;AAC1D,8DAA+E;AAC/E,qFAAmF;AAQnF,SAAS,mBAAmB,CAAC,EAIF;IAJ3B,iBAmEC;QAlEC,kBAAkB,wBAAA,EAClB,iBAAiB,uBAAA,EACjB,MAAM,YAAA;IAEA,IAAA,KAAkC,IAAA,gBAAQ,EAAC,EAAE,CAAC,EAA7C,YAAY,QAAA,EAAE,eAAe,QAAgB,CAAA;IACpD,IAAA,iCAAoB,EAAC;QACnB,IAAM,OAAO,GAAG;;;;;wBACN,KAAK,GAAK,kBAAkB,MAAvB,CAAuB;wBAC5B,GAAG,GAA0B,KAAK,IAA/B,EAAE,KAAwB,KAAK,eAAV,EAAnB,cAAc,mBAAG,EAAE,KAAA,CAAU;wBAClC,YAAY,GAAK,iBAAiB,aAAtB,CAAsB;wBAC1C,IAAI,CAAC,YAAY,EAAE;4BACjB,OAAO,CAAC,KAAK,CACX,kEAAkE,CACnE,CAAA;yBACF;wBACK,6BAA6B,GAAkC;4BACnE,YAAY,EACV,oEAAoE;4BACtE,cAAc,EAAE,GAAG;4BACnB,cAAc,gBAAA;4BACd,MAAM,EAAE,YAAa;yBACtB,CAAA;;;;wBAGa,qBAAM,IAAA,gDAAgC,EAChD,6BAA6B,CAC9B;4BACD,iGAAiG;4BACjG,mCAAmC;0BAFlC;;wBAFK,GAAG,GAAG,SAEX;wBAGK,WAAW,GAAG,GAAG,CAAC,cAAc,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,UAAU,CAAC,CAAA;wBAClE,wBAAwB,GAAG,cAAY,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,WAAW,CAAG,CAAA;wBACxF,eAAe,CAAC,wBAAwB,CAAC,OAAO,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC,CAAA;;;;wBAE9D,OAAO,CAAC,KAAK,CAAC,4CAA4C,EAAE,GAAC,CAAC,CAAA;;;;;aAEjE,CAAA;QACD,OAAO,EAAE,CAAA;IACX,CAAC,EAAE,CAAC,kBAAkB,EAAE,iBAAiB,CAAC,CAAC,CAAA;IAE3C,OAAO,CACL,8BAAC,6DAA6B,IAC5B,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,MAAM,EACf,KAAK,EAAC,2BAA2B,EACjC,QAAQ,EAAE,mKAEL,EACL,OAAO,EAAE,sBAAmB,YAAY,OAAG,EAC3C,MAAM,EAAE;;YACiD,qCAAG,MAAM,EAAC,QAAQ,EACrE,GAAG,EAAC,qBAAqB,EACzB,IAAI,EAAC,gIAAgI;;gBAC9H,IAAI,CACT;iGACH,EACL,KAAK,EAAE,WAAS,IAAI,yBAAmB,YAAY,WAAK,IAAI,4CAAuC,EACnG,WAAW,EAAE;;YAC+C,qCAAG,MAAM,EAAC,QAAQ,EACxE,GAAG,EAAC,qBAAqB,EACzB,IAAI,EAAC,gIAAgI,cAEnI;iGACH,EACL,UAAU,EAAE,8BAA2B,YAAY,WAAK,IAAI,wBAAqB,GACjF,CACH,CAAA;AACH,CAAC;AAED,kBAAe,mBAAmB,CAAA"}

package/dist/containers/widgets/Checkbox.d.ts CHANGED Viewed

@@ -8,5 +8,6 @@ export declare type CheckboxProps = {
     children?: React.ReactChild;
     onClick?: (event: React.SyntheticEvent<HTMLDivElement>) => void;
     disabled?: boolean;
+    'data-testid'?: string;
 };
 export declare const Checkbox: React.FunctionComponent<CheckboxProps>;

package/dist/containers/widgets/Checkbox.js CHANGED Viewed

@@ -30,7 +30,7 @@ var Checkbox = function (props) {
         className += " " + props.className;
     }
     return (react_1.default.createElement("div", { className: className, onClick: props.onClick },
-        react_1.default.createElement("input", { type: "checkbox", checked: checked, id: uniqueId, onChange: handleCheckboxChange, disabled: disabled }),
+        react_1.default.createElement("input", { type: "checkbox", checked: checked, id: uniqueId, onChange: handleCheckboxChange, disabled: disabled, "data-testid": props['data-testid'] }),
         react_1.default.createElement("label", { htmlFor: uniqueId }, props.label), (_a = props.children) !== null && _a !== void 0 ? _a : react_1.default.createElement(react_1.default.Fragment, null)));
 };
 exports.Checkbox = Checkbox;

package/dist/containers/widgets/Checkbox.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"Checkbox.js","sourceRoot":"","sources":["../../../src/lib/containers/widgets/Checkbox.tsx"],"names":[],"mappings":";;;;AAAA,uCAAiD;AACjD,0DAAkD;~~AAa3C~~,IAAM,QAAQ,GAA2C,UAC9D,KAAoB;;IAGlB,IAAA,KAGE,KAAK,QAHsB,EAApB,YAAY,mBAAG,KAAK,KAAA,EAC7B,KAEE,KAAK,YAFY,EAAnB,WAAW,mBAAG,KAAK,KAAA,EACnB,KACE,KAAK,SADS,EAAhB,QAAQ,mBAAG,KAAK,KAAA,CACT;IACH,IAAA,KAAwB,IAAA,gBAAQ,EAAU,YAAY,CAAC,EAAtD,OAAO,QAAA,EAAE,UAAU,QAAmC,CAAA;IACtD,IAAA,QAAQ,GAAI,IAAA,gBAAQ,EAAC,IAAA,oBAAS,EAAC,eAAe,CAAC,CAAC,GAAxC,CAAwC;IAEvD,IAAA,iBAAS,EAAC;QACR,UAAU,CAAC,YAAY,CAAC,CAAA;IAC1B,CAAC,EAAE,CAAC,YAAY,CAAC,CAAC,CAAA;IAElB,IAAM,oBAAoB,GAAG,UAAC,KAA0C;QACtE,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;QACpC,IAAI,WAAW,IAAI,KAAK,CAAC,MAAM,CAAC,OAAO,KAAK,KAAK,EAAE;YACjD;;;cAGE;YACF,UAAU,CAAC,IAAI,CAAC,CAAA;SACjB;aAAM;YACL,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;SACjC;IACH,CAAC,CAAA;IAED,IAAI,SAAS,GAAG,UAAU,CAAA;IAC1B,IAAI,KAAK,CAAC,SAAS,EAAE;QACnB,SAAS,IAAI,MAAI,KAAK,CAAC,SAAW,CAAA;KACnC;IAED,OAAO,CACL,uCAAK,SAAS,EAAE,SAAS,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO;QAC/C,yCACE,IAAI,EAAC,UAAU,EACf,OAAO,EAAE,OAAO,EAChB,EAAE,EAAE,QAAQ,EACZ,QAAQ,EAAE,oBAAoB,EAC9B,QAAQ,EAAE,QAAQ,~~GAClB~~;QACF,yCAAO,OAAO,EAAE,QAAQ,IAAG,KAAK,CAAC,KAAK,CAAS,EAC9C,MAAA,KAAK,CAAC,QAAQ,mCAAI,6DAAK,CACpB,CACP,CAAA;AACH,CAAC,CAAA;~~AA9CY~~,QAAA,QAAQ,~~YA8CpB~~"}
1	+ {"version":3,"file":"Checkbox.js","sourceRoot":"","sources":["../../../src/lib/containers/widgets/Checkbox.tsx"],"names":[],"mappings":";;;;AAAA,uCAAiD;AACjD,0DAAkD;AAc3C,IAAM,QAAQ,GAA2C,UAC9D,KAAoB;;IAGlB,IAAA,KAGE,KAAK,QAHsB,EAApB,YAAY,mBAAG,KAAK,KAAA,EAC7B,KAEE,KAAK,YAFY,EAAnB,WAAW,mBAAG,KAAK,KAAA,EACnB,KACE,KAAK,SADS,EAAhB,QAAQ,mBAAG,KAAK,KAAA,CACT;IACH,IAAA,KAAwB,IAAA,gBAAQ,EAAU,YAAY,CAAC,EAAtD,OAAO,QAAA,EAAE,UAAU,QAAmC,CAAA;IACtD,IAAA,QAAQ,GAAI,IAAA,gBAAQ,EAAC,IAAA,oBAAS,EAAC,eAAe,CAAC,CAAC,GAAxC,CAAwC;IAEvD,IAAA,iBAAS,EAAC;QACR,UAAU,CAAC,YAAY,CAAC,CAAA;IAC1B,CAAC,EAAE,CAAC,YAAY,CAAC,CAAC,CAAA;IAElB,IAAM,oBAAoB,GAAG,UAAC,KAA0C;QACtE,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;QACpC,IAAI,WAAW,IAAI,KAAK,CAAC,MAAM,CAAC,OAAO,KAAK,KAAK,EAAE;YACjD;;;cAGE;YACF,UAAU,CAAC,IAAI,CAAC,CAAA;SACjB;aAAM;YACL,UAAU,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;SACjC;IACH,CAAC,CAAA;IAED,IAAI,SAAS,GAAG,UAAU,CAAA;IAC1B,IAAI,KAAK,CAAC,SAAS,EAAE;QACnB,SAAS,IAAI,MAAI,KAAK,CAAC,SAAW,CAAA;KACnC;IAED,OAAO,CACL,uCAAK,SAAS,EAAE,SAAS,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO;QAC/C,yCACE,IAAI,EAAC,UAAU,EACf,OAAO,EAAE,OAAO,EAChB,EAAE,EAAE,QAAQ,EACZ,QAAQ,EAAE,oBAAoB,EAC9B,QAAQ,EAAE,QAAQ,iBACL,KAAK,CAAC,aAAa,CAAC,GACjC;QACF,yCAAO,OAAO,EAAE,QAAQ,IAAG,KAAK,CAAC,KAAK,CAAS,EAC9C,MAAA,KAAK,CAAC,QAAQ,mCAAI,6DAAK,CACpB,CACP,CAAA;AACH,CAAC,CAAA;AA/CY,QAAA,QAAQ,YA+CpB"}

package/dist/index.d.ts CHANGED Viewed

@@ -19,7 +19,7 @@ import RssFeedCards from './containers/RssFeedCards';
 import SynapsePlot from './containers/widgets/SynapsePlot';
 import UserCardListGroups from './containers/home_page/people/UserCardListGroups';
 import RenderIfInView from './containers/RenderIfInView';
-import ProgrammaticOptions from './containers/table/table-top/ProgrammaticOptions';
+import ProgrammaticTableDownload from './containers/table/table-top/ProgrammaticTableDownload';
 import UserProfileLinks from './containers/user_profile_links/UserProfileLinks';
 import { useSynapseContext } from './utils/SynapseContext';
 import './style/components/_spinner.scss';
@@ -77,7 +77,6 @@ declare const SynapseComponents: {
     DownloadCartPage: import("react").FunctionComponent<import("./containers/download_list_v2/DownloadCartPage").DownloadCartPageProps>;
     ShowDownloadV2: typeof ShowDownloadV2;
     FullWidthAlert: typeof FullWidthAlert;
-    ProgrammaticOptions: typeof ProgrammaticOptions;
     SynapseToastContainer: import("react").FunctionComponent<{}>;
     displayToast: (message: string, variant?: "success" | "info" | "warning" | "danger" | undefined, toastMessageOptions?: {
         title?: string | undefined;
@@ -91,5 +90,6 @@ declare const SynapseComponents: {
     MarkdownPopover: import("react").FunctionComponent<import("./containers/MarkdownPopover").MarkdownPopoverProps>;
     FeaturedToolsList: import("react").FunctionComponent<import("./containers/home_page/featured_tools/FeaturedToolsList").FeaturedToolsListProps>;
     SubsectionRowRenderer: import("react").FunctionComponent<import("./containers/SubsectionRowRenderer").SubsectionRowRendererProps>;
+    ProgrammaticTableDownload: typeof ProgrammaticTableDownload;
 };
 export { SynapseClient, SynapseConstants, SynapseComponents, SynapseContext, Typography };

package/dist/index.js CHANGED Viewed

@@ -46,7 +46,7 @@ var ProjectViewCarousel_1 = (0, tslib_1.__importDefault)(require("./containers/h
 var EntityFinder_1 = (0, tslib_1.__importDefault)(require("./containers/entity_finder/EntityFinder"));
 var ExperimentalMode_1 = (0, tslib_1.__importDefault)(require("./containers/ExperimentalMode"));
 var EntityBadgeIcons_1 = require("./containers/EntityBadgeIcons");
-var ProgrammaticOptions_1 = (0, tslib_1.__importDefault)(require("./containers/table/table-top/ProgrammaticOptions"));
+var ProgrammaticTableDownload_1 = (0, tslib_1.__importDefault)(require("./containers/table/table-top/ProgrammaticTableDownload"));
 var UserProfileLinks_1 = (0, tslib_1.__importDefault)(require("./containers/user_profile_links/UserProfileLinks"));
 var SynapseContext_1 = require("./utils/SynapseContext");
 var MarkdownPopover_1 = require("./containers/MarkdownPopover");
@@ -115,13 +115,13 @@ var SynapseComponents = {
     DownloadCartPage: DownloadCartPage_1.DownloadCartPage,
     ShowDownloadV2: ShowDownloadV2_1.default,
     FullWidthAlert: FullWidthAlert_1.default,
-    ProgrammaticOptions: ProgrammaticOptions_1.default,
     SynapseToastContainer: ToastMessage_1.SynapseToastContainer,
     displayToast: ToastMessage_1.displayToast,
     UserProfileLinks: UserProfileLinks_1.default,
     MarkdownPopover: MarkdownPopover_1.MarkdownPopover,
     FeaturedToolsList: FeaturedToolsList_1.default,
-    SubsectionRowRenderer: SubsectionRowRenderer_1.default
+    SubsectionRowRenderer: SubsectionRowRenderer_1.default,
+    ProgrammaticTableDownload: ProgrammaticTableDownload_1.default,
 };
 exports.SynapseComponents = SynapseComponents;
 //# sourceMappingURL=index.js.map

package/dist/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/lib/index.ts"],"names":[],"mappings":";;;;AAAA,uCAAoC;AACpC,mCAAgC;AAChC,qCAAkC;AAClC,8CAA4C;AAC5C,8FAA0D;AAC1D,wFAAoD;AACpD,6HAAyF;AACzF,8FAA0D;AAC1D,kFAA8C;AAC9C,8FAA0D;AAC1D,kHAA8E;AAC9E,gFAA4C;AAC5C,0EAAsC;AACtC,oFAAgD;AAChD,oFAAgD;AAChD,0FAAsD;AACtD,8EAA4E;AAC5E,yHAAqF;AACrF,yIAAqG;AACrG,oGAAgE;AAChE,0FAAsD;AACtD,sGAAkE;AAClE,gHAA4E;AAC5E,0FAAsD;AACtD,mGAA+D;AAC/D,sGAAkE;AAClE,wFAAoD;AACpD,4FAAwD;AACxD,wGAAoE;AACpE,kFAA8C;AAC9C,8FAA0D;AAC1D,oGAAgE;AAChE,0GAAsE;AACtE,wHAAoF;AACpF,2HAAuF;AACvF,qHAAiF;AACjF,oEAAkE;AAClE,4FAAwD;AACxD,oGAAgE;AAChE,wFAAoD;AACpD,sIAAkG;AAClG,sGAAkE;AAClE,gGAA4D;AAC5D,kEAAgE;AAChE,kIAA8F;AAC9F,mHAA+E;AAC/E,yDAI+B;AAC/B,gEAA8D;AAE9D,6EAA6E;AAC7E,0BAA0B;AAC1B,4CAAyC;AACzC,iCAAyD;AAqEjC,iGArEf,wBAAgB,OAqEe;AAA/B,8FArEkB,qBAAa,OAqElB;AApEtB,gFAA8E;AAC9E,4FAA0F;AAC1F,mFAAiF;AACjF,6GAAyE;AACzE,4FAAwD;AACxD,0DAA+E;AAC/E,0FAAsD;AA8DuB,qBA9DtE,oBAAU,CA8DsE;AA5DvF,IAAM,cAAc,GAAG;IACrB,sBAAsB,yCAAA;IACtB,sBAAsB,yCAAA;IACtB,iBAAiB,oCAAA;CAClB,CAAA;AAwD4D,wCAAc;AAtD3E,IAAM,iBAAiB,GAAG;IACxB,MAAM,iBAAA;IACN,KAAK,iBAAA;IACL,aAAa,yBAAA;IACb,YAAY,wBAAA;IACZ,eAAe,2BAAA;IACf,sBAAsB,kCAAA;IACtB,YAAY,wBAAA;IACZ,kBAAkB,8BAAA;IAClB,UAAU,sBAAA;IACV,QAAQ,oBAAA;IACR,UAAU,sBAAA;IACV,QAAQ,EAAE,yBAAe;IACzB,aAAa,yBAAA;IACb,kBAAkB,8BAAA;IAClB,0BAA0B,sCAAA;IAC1B,SAAS,qBAAA;IACT,iBAAiB,6BAAA;IACjB,UAAU,sBAAA;IACV,YAAY,wBAAA;IACZ,mBAAmB,+BAAA;IACnB,sBAAsB,iDAAA;IACtB,QAAQ,oBAAA;IACR,KAAK,iBAAA;IACL,SAAS,qBAAA;IACT,SAAS,qBAAA;IACT,WAAW,uBAAA;IACX,YAAY,wBAAA;IACZ,cAAc,0BAAA;IACd,kBAAkB,8BAAA;IAClB,gBAAgB,4BAAA;IAChB,kBAAkB,8BAAA;IAClB,cAAc,iCAAA;IACd,oBAAoB,6CAAA;IACpB,iBAAiB,uCAAA;IACjB,cAAc,0BAAA;IACd,kBAAkB,8BAAA;IAClB,YAAY,wBAAA;IACZ,mBAAmB,+BAAA;IACnB,YAAY,wBAAA;IACZ,gBAAgB,4BAAA;IAChB,gBAAgB,qCAAA;IAChB,gBAAgB,qCAAA;IAChB,cAAc,0BAAA;IACd,cAAc,EAAE,wBAAc;IAC9B,qBAAqB,sCAAA;IACrB,YAAY,6BAAA;IACZ,gBAAgB,4BAAA;IAChB,eAAe,mCAAA;IACf,iBAAiB,6BAAA;IACjB,qBAAqB,iCAAA;IACrB,yBAAyB,qCAAA;CAC1B,CAAA;AAEyC,8CAAiB"}

package/dist/rollup.index.d.ts CHANGED Viewed

@@ -10,8 +10,9 @@ import { SynapseConstants, SynapseClient } from './utils/';
 import FavoritesPage from './containers/FavoritesPage';
 import ShowDownloadV2 from './containers/download_list_v2/ShowDownloadV2';
 import FullWidthAlert from './containers/FullWidthAlert';
+import DirectProgrammaticDownload from './containers/download_list_v2/DirectProgrammaticDownload';
 import UserProfileLinks from './containers/user_profile_links/UserProfileLinks';
-import ProgrammaticOptions from './containers/table/table-top/ProgrammaticOptions';
+import ProgrammaticTableDownload from './containers/table/table-top/ProgrammaticTableDownload';
 import { useSynapseContext } from './utils/SynapseContext';
 import { DatasetItemsEditor } from './containers/table/datasets/DatasetItemsEditor';
 declare const SynapseContext: {
@@ -46,7 +47,6 @@ declare const SynapseComponents: {
     SynapseNavDrawer: import("react").FunctionComponent<import("./containers/SynapseNavDrawer").SynapseNavDrawerProps>;
     FavoritesPage: typeof FavoritesPage;
     EntityModal: import("react").FC<import("./containers/entity/metadata/EntityModal").EntityModalProps>;
-    ProgrammaticOptions: typeof ProgrammaticOptions;
     SynapseToastContainer: import("react").FunctionComponent<{}>;
     displayToast: (message: string, variant?: "success" | "info" | "warning" | "danger" | undefined, toastMessageOptions?: {
         title?: string | undefined;
@@ -60,5 +60,12 @@ declare const SynapseComponents: {
     UserProfileLinks: typeof UserProfileLinks;
     PlotlyWrapper: import("react").FC<import("./containers/PlotlyWrapper").PlotlyWrapperProps>;
     DatasetItemsEditor: typeof DatasetItemsEditor;
+    EntityTypeIcon: import("react").FC<Omit<import("@fortawesome/react-fontawesome").FontAwesomeIconProps, "icon"> & {
+        type: import("./utils/synapseTypes").EntityType;
+    }>;
+    HelpPopover: import("react").FunctionComponent<import("./containers/HelpPopover").HelpPopoverProps>;
+    ProgrammaticTableDownload: typeof ProgrammaticTableDownload;
+    DirectProgrammaticDownload: typeof DirectProgrammaticDownload;
+    ProgrammaticInstructionsModal: ({ show, title, onClose, pythonNotes, pythonCode, rNotes, rCode, cliNotes, cliCode, helpMarkdown, helpUrl, }: import("./containers/ProgrammaticInstructionsModal").ProgrammaticInstructionsModalProps) => JSX.Element;
 };
 export { SynapseComponents, SynapseConstants, SynapseClient, SynapseContext };

package/dist/rollup.index.js CHANGED Viewed

@@ -30,16 +30,20 @@ var ErrorPage_1 = (0, tslib_1.__importDefault)(require("./containers/ErrorPage")
 var EntityBadgeIcons_1 = require("./containers/EntityBadgeIcons");
 var ShowDownloadV2_1 = (0, tslib_1.__importDefault)(require("./containers/download_list_v2/ShowDownloadV2"));
 var FullWidthAlert_1 = (0, tslib_1.__importDefault)(require("./containers/FullWidthAlert"));
+var HelpPopover_1 = require("./containers/HelpPopover");
+var DirectProgrammaticDownload_1 = (0, tslib_1.__importDefault)(require("./containers/download_list_v2/DirectProgrammaticDownload"));
 var DownloadConfirmation_1 = require("./containers/download_list/DownloadConfirmation");
 var UserProfileLinks_1 = (0, tslib_1.__importDefault)(require("./containers/user_profile_links/UserProfileLinks"));
 var SchemaDrivenAnnotationEditor_1 = require("./containers/entity/annotations/SchemaDrivenAnnotationEditor");
 var EntityModal_1 = require("./containers/entity/metadata/EntityModal");
-var ProgrammaticOptions_1 = (0, tslib_1.__importDefault)(require("./containers/table/table-top/ProgrammaticOptions"));
+var ProgrammaticTableDownload_1 = (0, tslib_1.__importDefault)(require("./containers/table/table-top/ProgrammaticTableDownload"));
 var ToastMessage_1 = require("./containers/ToastMessage");
+var ProgrammaticInstructionsModal_1 = require("./containers/ProgrammaticInstructionsModal");
 var PlotlyWrapper_1 = (0, tslib_1.__importDefault)(require("./containers/PlotlyWrapper"));
 var IconSvg_1 = (0, tslib_1.__importDefault)(require("./containers/IconSvg"));
 var SynapseContext_1 = require("./utils/SynapseContext");
 var DatasetItemsEditor_1 = require("./containers/table/datasets/DatasetItemsEditor");
+var EntityIcon_1 = require("./containers/EntityIcon");
 var SynapseContext = {
     SynapseContextProvider: SynapseContext_1.SynapseContextProvider,
     SynapseContextConsumer: SynapseContext_1.SynapseContextConsumer,
@@ -73,13 +77,17 @@ var SynapseComponents = {
     SynapseNavDrawer: SynapseNavDrawer_1.SynapseNavDrawer,
     FavoritesPage: FavoritesPage_1.default,
     EntityModal: EntityModal_1.EntityModal,
-    ProgrammaticOptions: ProgrammaticOptions_1.default,
     SynapseToastContainer: ToastMessage_1.SynapseToastContainer,
     displayToast: ToastMessage_1.displayToast,
     IconSvg: IconSvg_1.default,
     UserProfileLinks: UserProfileLinks_1.default,
     PlotlyWrapper: PlotlyWrapper_1.default,
     DatasetItemsEditor: DatasetItemsEditor_1.DatasetItemsEditor,
+    EntityTypeIcon: EntityIcon_1.EntityTypeIcon,
+    HelpPopover: HelpPopover_1.HelpPopover,
+    ProgrammaticTableDownload: ProgrammaticTableDownload_1.default,
+    DirectProgrammaticDownload: DirectProgrammaticDownload_1.default,
+    ProgrammaticInstructionsModal: ProgrammaticInstructionsModal_1.ProgrammaticInstructionsModal,
 };
 exports.SynapseComponents = SynapseComponents;
 //# sourceMappingURL=rollup.index.js.map

package/dist/rollup.index.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"rollup.index.js","sourceRoot":"","sources":["../src/lib/rollup.index.ts"],"names":[],"mappings":";;;;AAAA,uCAAoC;AACpC,gFAA4C;AAC5C,0EAAsC;AACtC,kFAA8C;AAC9C,4FAAwD;AACxD,oFAAgD;AAChD,kFAA8C;AAC9C,gHAA4E;AAC5E,6BAA0B;AAC1B,kCAA0D;AAkF9B,iGAlFnB,wBAAgB,OAkFmB;AAAE,8FAlFnB,qBAAa,OAkFmB;AAjF3D,gFAA8E;AAC9E,sFAAoF;AACpF,oEAAkE;AAClE,oGAAgE;AAChE,wFAAoD;AACpD,sIAAkG;AAClG,gEAA8D;AAC9D,kEAAgE;AAChE,mFAAiF;AACjF,0FAAsD;AACtD,4FAA0F;AAC1F,wEAAsE;AACtE,kFAA8C;AAC9C,kEAAgE;AAChE,6GAAyE;AACzE,4FAAwD;AACxD,wDAAsD;AACtD,qIAAiG;AACjG,wFAAsF;AACtF,mHAA+E;AAC/E,6GAA2G;AAC3G,wEAAsE;AACtE,kIAA8F;AAC9F,0DAA+E;AAC/E,4FAA0F;AAC1F,0FAAsD;AACtD,8EAA0C;AAC1C,yDAI+B;AAC/B,qFAAmF;AACnF,sDAAwD;AAExD,IAAM,cAAc,GAAG;IACrB,sBAAsB,yCAAA;IACtB,sBAAsB,yCAAA;IACtB,iBAAiB,oCAAA;CAClB,CAAA;AA0C4D,wCAAc;AAxC3E,IAAM,iBAAiB,GAAG;IACxB,KAAK,iBAAA;IACL,SAAS,qBAAA;IACT,UAAU,sBAAA;IACV,QAAQ,oBAAA;IACR,cAAc,0BAAA;IACd,SAAS,qBAAA;IACT,iBAAiB,6BAAA;IACjB,cAAc,iCAAA;IACd,oBAAoB,6CAAA;IACpB,eAAe,mCAAA;IACf,iBAAiB,uCAAA;IACjB,kBAAkB,8BAAA;IAClB,YAAY,wBAAA;IACZ,mBAAmB,+BAAA;IACnB,eAAe,mCAAA;IACf,YAAY,6BAAA;IACZ,SAAS,qBAAA;IACT,gBAAgB,qCAAA;IAChB,gBAAgB,qCAAA;IAChB,cAAc,0BAAA;IACd,oBAAoB,6CAAA;IACpB,cAAc,EAAE,wBAAc;IAC9B,4BAA4B,6DAAA;IAC5B,gBAAgB,qCAAA;IAChB,aAAa,yBAAA;IACb,WAAW,2BAAA;IACX,qBAAqB,sCAAA;IACrB,YAAY,6BAAA;IACZ,OAAO,mBAAA;IACP,gBAAgB,4BAAA;IAChB,aAAa,yBAAA;IACb,kBAAkB,yCAAA;IAClB,cAAc,6BAAA;IACd,WAAW,2BAAA;IACX,yBAAyB,qCAAA;IACzB,0BAA0B,sCAAA;IAC1B,6BAA6B,+DAAA;CAC9B,CAAA;AAEQ,8CAAiB"}

package/dist/style/abstracts/_mixins.scss CHANGED Viewed

@@ -53,7 +53,8 @@
   thead:first-child > tr:first-child > th {
     padding: 10px 6px 5px 7px;
     border: 1px solid #dddddf;
-    color: #515359;
+    background-color: map.get(SRC.$colors, 'gray-200');
+    color: map.get(SRC.$colors, 'gray-800');
     span {
       display: inline-block;
       float: right;
@@ -64,6 +65,28 @@
   }
 }
+@mixin sticky-column() {
+  border-collapse: separate;
+  .stickyColumn {
+    right: 0;
+    position: sticky;
+    z-index: 800;
+  }
+  // fix colors (icons, and set the cell background color to be opaque).
+  thead .stickyColumn {
+    text-align: center;
+  }
+  tbody tr > td.stickyColumn {
+    border-left: 1px solid map.get(SRC.$colors, 'gray-400');
+  }
+  tbody tr:nth-of-type(even) > .stickyColumn {
+    background-color: white;
+  }
+  tbody tr:nth-of-type(odd) > .stickyColumn {
+    background-color: #FBFBFC;
+  }
+}
 @mixin underline-tabs(
   $active-color: SRC.$secondary-action-color,
   $inactive-color: lightgray
@@ -108,6 +131,14 @@ $link-underline-color-default: adjust-color(
   $lightness: 40%
 ) !default;
+@mixin disabled() {
+  color: map.get(SRC.$colors, 'gray-600');
+  &:hover {
+    border-bottom: 1px solid $link-underline-color-default;
+    cursor: default;
+  }
+}
 // Core link styles across the portal main area.
 @mixin highlightLink() {
   color: SRC.$primary-action-color;
@@ -119,6 +150,9 @@ $link-underline-color-default: adjust-color(
     border-bottom: 2px solid map.get(SRC.$primary-color-palette, 700);
     margin-bottom: -1px;
   }
+  &.disabled {
+    @include disabled;
+  }
 }
 @mixin normalLink() {
@@ -131,6 +165,9 @@ $link-underline-color-default: adjust-color(
     border-bottom: 2px solid map.get(SRC.$primary-color-palette, 700);
     margin-bottom: 0px;
   }
+  &.disabled {
+    @include disabled;
+  }
 }
 @mixin ignoreLink() {
@@ -143,4 +180,7 @@ $link-underline-color-default: adjust-color(
     border-bottom: unset;
     margin-bottom: unset;
   }
+  &.disabled {
+    @include disabled;
+  }
 }

package/dist/style/abstracts/_variables.scss CHANGED Viewed

@@ -47,10 +47,10 @@ $bootstrap-4-danger-bg: #f2dede !default;
 $bootstrap-4-danger-text-color: rgb(102, 102, 102) !default;
 $space-unit: 2.1rem;
-$green-affirmative: #35bf7d !default;
-$yellow-warning: #f0dc26 !default;
+$green-affirmative: map.get($colors, 'success') !default;
+$yellow-warning: map.get($colors, 'warning') !default;
 $red-delete: $red-error2 !default;
-$red-required: #c94281 !default;
+$red-required: map.get($colors, 'error') !default;
 $box-shadow-med: 0 1px 3px rgba(0, 0, 0, 0.5);
 $box-shadow-soft: 0 3px 10px rgba(93, 105, 171, 0.1);

package/dist/style/base/_core.scss CHANGED Viewed

@@ -4,6 +4,7 @@
 // from // from SWC.scss and core.scss
 @use '../abstracts/variables' as SRC;
 @use '../abstracts/mixins' as SRC_Mixins;
+@use 'sass:map';
 // Fix scrollbar not showing for some people when css set to scroll: auto
 // Ref: https://stackoverflow.com/questions/7492062/css-overflow-scroll-always-show-vertical-scroll-bar
@@ -1057,22 +1058,22 @@ a.dropdown-item {
   }
 }
 .SRC-success-color {
-  color: #28a745;
+  color: map.get(SRC.$colors, 'success');
 }
 .SRC-success-color-bg {
-  background-color: #28a745;
+  background-color: map.get(SRC.$colors, 'success');
 }
 .SRC-warning-color {
-  color: #e0b603;
+  color: map.get(SRC.$colors, 'warning');
 }
 .SRC-warning-color-bg {
-  background-color: #e0b603;
+  background-color: map.get(SRC.$colors, 'warning');
 }
 .SRC-danger-color {
-  color: #eb5757;
+  color: map.get(SRC.$colors, 'error');
 }
 .SRC-danger-color-bg {
-  background-color: #eb5757;
+  background-color: map.get(SRC.$colors, 'error');
 }
 // PORTALS-965: add a max-width to the bootstrap container-fluid class

package/dist/style/base/_icons.scss CHANGED Viewed

@@ -90,9 +90,8 @@
   }
 }
-.HelpButton {
-  color: #ababac;
-  margin: 5px;
-  height: 18px;
-  width: 18px;
+svg.HelpButton {
+  color: map.get(SRC.$colors, 'gray-600');
+  cursor: pointer;
+  font-size: 1.2em;
 }

package/dist/style/bootstrap4_backports/_overrides.scss CHANGED Viewed

@@ -1,4 +1,5 @@
 @use '../abstracts/variables' as SRC;
+@use 'sass:map';
 //overrides to bootstrap 4 that are directly applied to Bootstrap 4 class names
 .bootstrap-4-backport {
@@ -61,6 +62,11 @@
       padding-bottom: 0.75rem;
     }
   }
+  //Tables
+  .table-striped tbody tr:nth-of-type(odd) {
+    background-color: map.get(SRC.$colors, 'gray-100');
+  }
 }
 // Popovers

package/dist/style/components/_download-cart-page.scss CHANGED Viewed

@@ -82,10 +82,33 @@
       padding-right: 20px;
     }
   }
-  .subSectionOverview {
+  .subSectionOverviewContainer {
     padding: 30px 0px;
     background-color: SRC.$background-color-gray;
   }
+  .DownloadListTabContent {
+    .subSectionOverview {
+      display: flex;
+      column-gap: 10px;
+      >* {
+        &:first-child {
+          padding-left: 0px;
+        }
+        &:last-child {
+          padding-right: 0px;
+        }
+        padding: 0px 50px;
+      }
+      >*:first-child {
+        border-right: 1px solid #D0D4D9;
+      }
+      .headlineWithHelp {
+        display: flex;
+        column-gap: 10px;
+      }
+    }
+  }
   &__explore-all {
     text-align: center;
     padding-top: 20px;