synapse-react-client 2.0.57 → 2.0.58

package/dist/containers/table/datasets/DatasetItemsEditor.js

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+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.DatasetItemsEditor = void 0;
+var tslib_1 = require("tslib");
+var lab_1 = require("@material-ui/lab");
+var react_base_table_1 = (0, tslib_1.__importDefault)(require("@sage-bionetworks/react-base-table"));
+var react_1 = (0, tslib_1.__importStar)(require("react"));
+var react_bootstrap_1 = require("react-bootstrap");
+var react_tooltip_1 = (0, tslib_1.__importDefault)(require("react-tooltip"));
+var SkeletonTable_1 = require("../../../assets/skeletons/SkeletonTable");
+var TooltipUtils_1 = require("../../../utils/functions/TooltipUtils");
+var useEntity_1 = require("../../../utils/hooks/SynapseAPI/useEntity");
+var useSet_1 = require("../../../utils/hooks/useSet");
+var useTraceUpdate_1 = (0, tslib_1.__importDefault)(require("../../../utils/hooks/useTraceUpdate"));
+var synapseTypes_1 = require("../../../utils/synapseTypes");
+var Typography_1 = (0, tslib_1.__importDefault)(require("../../../utils/typography/Typography"));
+var EntityBadgeIcons_1 = require("../../EntityBadgeIcons");
+var DetailsViewTableRenderers_1 = require("../../entity_finder/details/view/DetailsViewTableRenderers");
+var EntityFinderModal_1 = require("../../entity_finder/EntityFinderModal");
+var TreeView_1 = require("../../entity_finder/tree/TreeView");
+var IconSvg_1 = (0, tslib_1.__importDefault)(require("../../IconSvg"));
+var WarningModal_1 = (0, tslib_1.__importDefault)(require("../../synapse_form_wrapper/WarningModal"));
+var ToastMessage_1 = require("../../ToastMessage");
+var Checkbox_1 = require("../../widgets/Checkbox");
+var DATASET_MAX_ITEM_LIMIT = 20000;
+var ROW_HEIGHT = 42;
+var TABLE_HEIGHT = 350;
+function DatasetItemsEditor(props) {
+    var entityId = props.entityId, onSave = props.onSave, onClose = props.onClose;
+    var _a = (0, react_1.useState)(false), showEntityFinder = _a[0], setShowEntityFinder = _a[1];
+    var _b = (0, react_1.useState)(false), showWarningModal = _b[0], setShowWarningModal = _b[1];
+    // Disable updating the entity after the initial fetch because we don't want to replace edits that the user makes.
+    var _c = (0, react_1.useState)(), datasetToUpdate = _c[0], _setDatasetToUpdate = _c[1];
+    var setDatasetToUpdate = function (dataset) {
+        setHasChangedSinceLastSave(true);
+        _setDatasetToUpdate(dataset);
+    };
+    var _d = (0, react_1.useState)(false), hasChangedSinceLastSave = _d[0], setHasChangedSinceLastSave = _d[1];
+    var _e = (0, useSet_1.useSet)(), selectedIds = _e.set, addSelectedId = _e.add, removeSelectedId = _e.remove, clearSelectedIds = _e.clear;
+    var allItemsAreSelected = !!(datasetToUpdate && datasetToUpdate.items.length === selectedIds.size);
+    var refetch = (0, useEntity_1.useGetEntity)(entityId, undefined, {
+        enabled: !datasetToUpdate,
+        onSuccess: function (dataset) {
+            setDatasetToUpdate(dataset);
+            setHasChangedSinceLastSave(false);
+        },
+    }).refetch;
+    var mutation = (0, useEntity_1.useUpdateEntity)({
+        onSuccess: function () {
+            (0, ToastMessage_1.displayToast)('Create a Version of this Dataset to freeze it in its current state', 'success', { title: 'Dataset Saved' });
+            if (onSave) {
+                onSave();
+            }
+        },
+        onError: function (error) {
+            if (error.status === 412) {
+                (0, ToastMessage_1.displayToast)('Re-retrieve the dataset to get the latest changes. Your current changes will be lost.', 'warning', {
+                    title: 'Dataset Updated since Last Fetched',
+                    primaryButtonText: 'Retrieve Dataset',
+                    onPrimaryButtonClick: refetch,
+                });
+            }
+            else {
+                (0, ToastMessage_1.displayToast)(error.reason, 'danger', {
+                    title: 'An Error Occurred',
+                });
+            }
+        },
+    });
+    var tableData = datasetToUpdate === null || datasetToUpdate === void 0 ? void 0 : datasetToUpdate.items.map(function (item) {
+        return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, item), { isSelected: selectedIds.has(item.entityId), setSelected: function (value) {
+                return value
+                    ? addSelectedId(item.entityId)
+                    : removeSelectedId(item.entityId);
+            } });
+    });
+    function addItemsToDataset(newItems) {
+        setDatasetToUpdate(function (datasetToUpdate) {
+            if (datasetToUpdate) {
+                var existingItems = datasetToUpdate.items.filter(function (item) { return !newItems.find(function (newItem) { return newItem.targetId === item.entityId; }); });
+                if (existingItems.length < datasetToUpdate.items.length) {
+                    (0, ToastMessage_1.displayToast)('Files were added that were already in the dataset. The versions of those files might have been updated.', 'info');
+                }
+                var items = (0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)([], existingItems, true), newItems.map(function (item) { return ({
+                    entityId: item.targetId,
+                    versionNumber: item.targetVersionNumber,
+                }); }), true);
+                return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, datasetToUpdate), { items: items });
+            }
+            else {
+                console.warn('Cannot add items to the Dataset because is undefined. The Dataset may not have been fetched yet.');
+                return datasetToUpdate;
+            }
+        });
+        clearSelectedIds();
+    }
+    function removeSelectedItemsFromDataset() {
+        setDatasetToUpdate(function (dataset) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, dataset), { items: dataset.items.filter(function (datasetItem) { return !selectedIds.has(datasetItem.entityId); }) })); });
+        clearSelectedIds();
+    }
+    function changeVersionOnItem(entityId, newVersion) {
+        setDatasetToUpdate(function (dataset) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, dataset), { items: dataset.items.map(function (datasetItem) {
+                return datasetItem.entityId === entityId
+                    ? { entityId: entityId, versionNumber: newVersion }
+                    : datasetItem;
+            }) })); });
+    }
+    var DatasetItemVersionRenderer = function (props) {
+        return (react_1.default.createElement(DetailsViewTableRenderers_1.DatasetEditorVersionRenderer, (0, tslib_1.__assign)({}, props, { toggleSelection: function (datasetItem) {
+                changeVersionOnItem(datasetItem.entityId, datasetItem.versionNumber);
+            } })));
+    };
+    var SelectAllCheckboxRenderer = function (props) {
+        var datasetToUpdate = props.datasetToUpdate, clearSelectedIds = props.clearSelectedIds, addSelectedId = props.addSelectedId;
+        (0, useTraceUpdate_1.default)(props);
+        var isChecked = allItemsAreSelected;
+        return datasetToUpdate ? (react_1.default.createElement("div", { "data-testid": "Select All", style: { cursor: 'pointer' }, onClick: function () {
+                if (isChecked) {
+                    clearSelectedIds();
+                }
+                else {
+                    addSelectedId.apply(void 0, datasetToUpdate.items.map(function (item) { return item.entityId; }));
+                }
+            } },
+            react_1.default.createElement(Checkbox_1.Checkbox, { label: "", className: "SRC-pointer-events-none", checked: isChecked, disabled: datasetToUpdate.items.length === 0, onChange: function () {
+                    // no-op
+                } }))) : (react_1.default.createElement(react_1.default.Fragment, null));
+    };
+    var renderedSelectAllCheckbox = datasetToUpdate ? (react_1.default.createElement(SelectAllCheckboxRenderer, { datasetToUpdate: datasetToUpdate, selectedIds: selectedIds, clearSelectedIds: clearSelectedIds, addSelectedId: addSelectedId, allItemsAreSelected: allItemsAreSelected })) : (react_1.default.createElement(react_1.default.Fragment, null));
+    var defaultColumns = [
+        {
+            key: 'errorState',
+            width: 30,
+            cellRenderer: DetailsViewTableRenderers_1.EntityErrorRenderer,
+        },
+        {
+            key: 'isSelected',
+            width: 40,
+            dataKey: 'isSelected',
+            headerRenderer: renderedSelectAllCheckbox,
+            cellRenderer: DetailsViewTableRenderers_1.CheckboxRenderer,
+        },
+        {
+            key: 'name',
+            width: 350,
+            dataKey: 'entityId',
+            title: 'Name',
+            resizable: true,
+            cellRenderer: DetailsViewTableRenderers_1.EntityNameRenderer,
+        },
+        {
+            key: 'status',
+            width: 80,
+            dataKey: 'entityId',
+            resizable: true,
+            cellRenderer: DetailsViewTableRenderers_1.BadgeIconsRenderer,
+        },
+        {
+            key: 'id',
+            width: 140,
+            title: 'ID',
+            dataKey: 'entityId',
+            resizable: true,
+        },
+        {
+            key: 'version',
+            width: 150,
+            title: 'Version',
+            dataKey: 'entityId',
+            cellRenderer: DatasetItemVersionRenderer,
+        },
+        {
+            key: 'createdOn',
+            width: 200,
+            title: 'Created On',
+            dataKey: 'entityId',
+            resizable: true,
+            cellRenderer: DetailsViewTableRenderers_1.CreatedOnRenderer,
+        },
+        {
+            key: 'modifiedOn',
+            width: 200,
+            title: 'Modified On',
+            dataKey: 'entityId',
+            resizable: true,
+            cellRenderer: DetailsViewTableRenderers_1.ModifiedOnRenderer,
+        },
+        {
+            key: 'modifiedBy',
+            width: 250,
+            title: 'Modified By',
+            dataKey: 'entityId',
+            resizable: true,
+            cellRenderer: DetailsViewTableRenderers_1.ModifiedByRenderer,
+        },
+        {
+            key: 'projectId',
+            width: 300,
+            title: 'Project',
+            dataKey: 'entityId',
+            resizable: true,
+            cellRenderer: DetailsViewTableRenderers_1.ProjectRenderer,
+        },
+    ];
+    function NoItemsPlaceholder() {
+        return (react_1.default.createElement("div", { className: "NoItemsPlaceholder" },
+            react_1.default.createElement(Typography_1.default, { variant: 'headline3' }, "No items in this Dataset"),
+            react_1.default.createElement(react_bootstrap_1.Button, { className: "AddItemsButton", variant: "outline", onClick: function () { return setShowEntityFinder(true); } },
+                react_1.default.createElement(IconSvg_1.default, { options: { icon: 'addCircleTwoTone' } }),
+                react_1.default.createElement("span", null, "Add Items"))));
+    }
+    return (react_1.default.createElement("div", { className: "DatasetEditor bootstrap-4-backport" },
+        react_1.default.createElement(EntityFinderModal_1.EntityFinderModal, { configuration: {
+                selectMultiple: true,
+                initialScope: TreeView_1.FinderScope.ALL_PROJECTS,
+                initialContainer: null,
+                selectableTypes: [synapseTypes_1.EntityType.FILE],
+                mustSelectVersionNumber: true,
+            }, show: showEntityFinder, onClose: function () {
+                setShowEntityFinder(false);
+            }, title: "Add Files to Dataset", confirmButtonCopy: "Add Files", onConfirm: function (items) {
+                addItemsToDataset(items);
+                setShowEntityFinder(false);
+            }, onCancel: function () { return setShowEntityFinder(false); } }),
+        react_1.default.createElement(WarningModal_1.default, { title: "Unsaved Changes", modalBody: "Any unsaved changes will be lost. Are you sure you want to close the editor?", confirmButtonText: "OK", onConfirm: function () {
+                if (onClose) {
+                    onClose();
+                }
+            }, show: showWarningModal, onConfirmCallbackArgs: [], onCancel: function () { return setShowWarningModal(false); } }),
+        react_1.default.createElement("div", { className: "DatasetEditorTopBottomPanel" },
+            react_1.default.createElement("div", { className: "ItemCount" }, datasetToUpdate ? (react_1.default.createElement(Typography_1.default, { variant: "headline3" },
+                datasetToUpdate.items.length === 0
+                    ? 'No'
+                    : datasetToUpdate.items.length.toLocaleString(),
+                ' ',
+                "File",
+                datasetToUpdate.items.length !== 1 && 's')) : (react_1.default.createElement(lab_1.Skeleton, { variant: "rect", width: 200 }))),
+            react_1.default.createElement(react_bootstrap_1.Button, { variant: "outline", disabled: selectedIds.size === DATASET_MAX_ITEM_LIMIT, onClick: function () { return setShowEntityFinder(true); } }, "Add Items"),
+            react_1.default.createElement(react_bootstrap_1.Button, { disabled: selectedIds.size === 0, variant: "outline", onClick: removeSelectedItemsFromDataset }, "Remove Items")),
+        react_1.default.createElement("div", { className: "DatasetEditorTableContainer" },
+            datasetToUpdate ? (datasetToUpdate.items.length === 0 ? (react_1.default.createElement(NoItemsPlaceholder, null)) : (react_1.default.createElement(react_base_table_1.default, { classPrefix: "DatasetEditorTable", data: tableData, height: TABLE_HEIGHT, width: defaultColumns.reduce(function (totalWidth, column) {
+                    return totalWidth + column.width;
+                }, 0), rowHeight: ROW_HEIGHT, overscanRowCount: 5, columns: defaultColumns, rowClassName: 'DatasetEditorRow', rowProps: function (_a) {
+                    var rowData = _a.rowData;
+                    return {
+                        'aria-selected': rowData.isSelected,
+                    };
+                }, headerCellProps: {
+                    role: 'columnheader',
+                }, onRowsRendered: TooltipUtils_1.rebuildTooltip, onScroll: TooltipUtils_1.rebuildTooltip }))) : (react_1.default.createElement(SkeletonTable_1.SkeletonTable, { className: "DatasetItemsEditorSkeleton", numRows: 8, numCols: 6, rowHeight: ROW_HEIGHT + "px" })),
+            react_1.default.createElement(react_tooltip_1.default, { id: EntityBadgeIcons_1.ENTITY_BADGE_ICONS_TOOLTIP_ID, className: "EntityBadgeTooltip", delayShow: 100, place: 'right', effect: 'solid' })),
+        react_1.default.createElement("div", { className: "DatasetEditorTopBottomPanel" },
+            react_1.default.createElement(react_bootstrap_1.Button, { variant: 'outline', onClick: function () {
+                    if (hasChangedSinceLastSave) {
+                        setShowWarningModal(true);
+                    }
+                    else if (onClose) {
+                        onClose();
+                    }
+                } }, "Cancel"),
+            react_1.default.createElement(react_bootstrap_1.Button, { disabled: !datasetToUpdate, variant: 'sds-primary', onClick: function () { return mutation.mutate(datasetToUpdate); } }, "Save"))));
+}
+exports.DatasetItemsEditor = DatasetItemsEditor;
+//# sourceMappingURL=DatasetItemsEditor.js.map

package/dist/containers/table/datasets/DatasetItemsEditor.js.map

@@ -0,0 +1 @@
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package/dist/index.d.ts

@@ -73,7 +73,7 @@ declare const SynapseComponents: {
     ProjectViewCarousel: import("react").FunctionComponent<import("./containers/home_page/project_view_carousel/ProjectViewCarousel").ProjectViewCarouselProps>;
     EntityFinder: import("react").FunctionComponent<import("./containers/entity_finder/EntityFinder").EntityFinderProps>;
     ExperimentalMode: import("react").FC<{}>;
-    EntityBadgeIcons: import("react").FunctionComponent<import("./containers/EntityBadgeIcons").EntityBadgeIconsProps>;
+    EntityBadgeIcons: (props: import("./containers/EntityBadgeIcons").EntityBadgeIconsProps) => JSX.Element;
     DownloadCartPage: import("react").FunctionComponent<import("./containers/download_list_v2/DownloadCartPage").DownloadCartPageProps>;
     ShowDownloadV2: typeof ShowDownloadV2;
     FullWidthAlert: typeof FullWidthAlert;

package/dist/rollup.index.d.ts

@@ -13,6 +13,7 @@ import FullWidthAlert from './containers/FullWidthAlert';
 import UserProfileLinks from './containers/user_profile_links/UserProfileLinks';
 import ProgrammaticOptions from './containers/table/table-top/ProgrammaticOptions';
 import { useSynapseContext } from './utils/SynapseContext';
+import { DatasetItemsEditor } from './containers/table/datasets/DatasetItemsEditor';
 declare const SynapseContext: {
     SynapseContextProvider: import("react").FunctionComponent<import("./utils/SynapseContext").SynapseContextProviderProps>;
     SynapseContextConsumer: import("react").Consumer<import("./utils/SynapseContext").SynapseContextType | undefined>;
@@ -36,7 +37,7 @@ declare const SynapseComponents: {
     SynapseHomepage: import("react").FunctionComponent<import("./containers/SynapseHomepage").SynapseHomepageProps>;
     EntityFinder: import("react").FunctionComponent<import("./containers/entity_finder/EntityFinder").EntityFinderProps>;
     ErrorPage: import("react").FunctionComponent<import("./containers/ErrorPage").ErrorPageProps>;
-    EntityBadgeIcons: import("react").FunctionComponent<import("./containers/EntityBadgeIcons").EntityBadgeIconsProps>;
+    EntityBadgeIcons: (props: import("./containers/EntityBadgeIcons").EntityBadgeIconsProps) => JSX.Element;
     DownloadCartPage: import("react").FunctionComponent<import("./containers/download_list_v2/DownloadCartPage").DownloadCartPageProps>;
     ShowDownloadV2: typeof ShowDownloadV2;
     DownloadConfirmation: import("react").FunctionComponent<import("./containers/download_list/DownloadConfirmation").DownloadConfirmationProps>;
@@ -58,5 +59,6 @@ declare const SynapseComponents: {
     IconSvg: import("react").FunctionComponent<import("./containers/IconSvg").IconSvgProps>;
     UserProfileLinks: typeof UserProfileLinks;
     PlotlyWrapper: import("react").FC<import("./containers/PlotlyWrapper").PlotlyWrapperProps>;
+    DatasetItemsEditor: typeof DatasetItemsEditor;
 };
 export { SynapseComponents, SynapseConstants, SynapseClient, SynapseContext };

package/dist/rollup.index.js

@@ -39,6 +39,7 @@ var ToastMessage_1 = require("./containers/ToastMessage");
 var PlotlyWrapper_1 = (0, tslib_1.__importDefault)(require("./containers/PlotlyWrapper"));
 var IconSvg_1 = (0, tslib_1.__importDefault)(require("./containers/IconSvg"));
 var SynapseContext_1 = require("./utils/SynapseContext");
+var DatasetItemsEditor_1 = require("./containers/table/datasets/DatasetItemsEditor");
 var SynapseContext = {
     SynapseContextProvider: SynapseContext_1.SynapseContextProvider,
     SynapseContextConsumer: SynapseContext_1.SynapseContextConsumer,
@@ -77,7 +78,8 @@ var SynapseComponents = {
     displayToast: ToastMessage_1.displayToast,
     IconSvg: IconSvg_1.default,
     UserProfileLinks: UserProfileLinks_1.default,
-    PlotlyWrapper: PlotlyWrapper_1.default
+    PlotlyWrapper: PlotlyWrapper_1.default,
+    DatasetItemsEditor: DatasetItemsEditor_1.DatasetItemsEditor,
 };
 exports.SynapseComponents = SynapseComponents;
 //# sourceMappingURL=rollup.index.js.map

package/dist/rollup.index.js.map

@@ -1 +1 @@
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package/dist/style/bootstrap4_backports/_overrides.scss

@@ -81,7 +81,6 @@ html:not(#synapse\.org) {
   .modal-content {
     padding: 5px 30px;
     .modal-header {
-      align-items: center;
       padding: 10px 0px;
       button.close {
         font-size: 28px;

package/dist/style/components/_all.scss

@@ -16,5 +16,6 @@
   './experimental-mode', './user-search-box', './entity-metadata',
   './download-cart-page', './global-alert', './annotations', 'plotlywrapper',
   './synapse-nav-drawer', './favorites-page', './skeletons', './toasts',
-  './user-profile-links', './blocking-loader', './transition', './popover', './featured-tool-card',
-  './row_renderers/observation-card', './subsection-row-renderer';
+  './user-profile-links', './blocking-loader', './transition', './popover',
+  './featured-tool-card', './row_renderers/observation-card',
+  './subsection-row-renderer', './dataset-editor', './fluid-modal';

package/dist/style/components/_dataset-editor.scss

@@ -0,0 +1,75 @@
+@use '../abstracts/variables' as SRC;
+@use '../abstracts/mixins' as SrcMixins;
+@use 'sass:map';
+
+.DatasetEditor {
+  border: 1px solid map.get(SRC.$colors, 'gray-300');
+  .DatasetEditorTopBottomPanel {
+    display: flex;
+    justify-content: flex-end;
+    gap: 7px;
+    width: 100%;
+    height: 70px;
+    background: #f9f9f9;
+    align-items: center;
+    padding: 15px 20px;
+
+    .ItemCount {
+      p {
+        margin-bottom: 0;
+      }
+      margin-right: auto;
+    }
+  }
+  .DatasetEditorTableContainer {
+    width: 100%;
+    overflow-x: auto;
+    .DatasetEditorTable {
+      p {
+        margin-bottom: unset;
+      }
+    }
+  }
+  .DatasetItemsEditorSkeleton {
+    margin: 15px;
+  }
+
+  .NoItemsPlaceholder {
+    height: 350px;
+    display: flex;
+    justify-content: center;
+    align-items: center;
+    flex-direction: column;
+
+    .AddItemsButton {
+      width: 150px;
+      span {
+        margin: 5px;
+      }
+    }
+  }
+
+  select.form-control {
+    margin-bottom: 0px;
+    width: 130px;
+  }
+}
+
+.EntityNameWithIconRenderer {
+  text-overflow: ellipsis;
+  white-space: nowrap;
+}
+
+.EntityErrorRenderer {
+  color: map.get(SRC.$colors, 'warning');
+  svg {
+    font-size: large;
+  }
+}
+
+$table-prefix: DatasetEditorTable;
+$table-font-size: 14px;
+$header-background-color: map.get(SRC.$colors, 'gray-200');
+$row-hovered-background-color: unset;
+$table-padding-left: 5px;
+@import 'node_modules/@sage-bionetworks/react-base-table/es/BaseTable';

package/dist/style/components/_fluid-modal.scss

@@ -0,0 +1,42 @@
+// See SWC-5801
+
+.FluidModal {
+  .modal-dialog {
+    width: auto;
+    max-width: 90vw;
+    @media (max-height: 500px) {
+      margin: 3vh auto;
+      margin-bottom: 0px;
+    }
+    .modal-content {
+      border-radius: 0px;
+      min-height: 300px;
+      .modal-header {
+        min-height: 50px;
+        max-height: 65px;
+        height: 8vh;
+        margin: 15px 0px 5px;
+      }
+
+      .modal-body {
+        max-height: 70vh;
+
+        @media (max-height: 600px) {
+          max-height: 65vh;
+        }
+
+        overflow-y: auto;
+      }
+      .modal-footer {
+        min-height: 45px;
+        max-height: 60px;
+        height: 6vh;
+        margin-bottom: 15px;
+
+        .btn {
+          margin-bottom: 0;
+        }
+      }
+    }
+  }
+}