symbiote-cli 0.2.1 → 0.2.2

package/dist/src/cortex/stage-0-structure.js

@@ -62,10 +62,8 @@ export async function runStage0(repo, rootDir, options) {
         });
         const dir = path.dirname(relPath);
         const moduleId = `module:${dir === '.' ? relPath : dir}`;
+        const barrel = language === 'typescript' || language === 'javascript' ? isBarrelFile(content) : false;
         if (dir === '.') {
-            const barrel = language === 'typescript' || language === 'javascript'
-                ? isBarrelFile(content)
-                : false;
             if (!moduleNodes.has(moduleId)) {
                 moduleNodes.set(moduleId, {
                     id: `module:${relPath}`,
@@ -82,9 +80,12 @@ export async function runStage0(repo, rootDir, options) {
                 moduleNodes.set(moduleId, {
                     id: moduleId,
                     path: dir,
-                    isBarrel: false,
+                    isBarrel: barrel,
                 });
             }
+            else if (barrel) {
+                moduleNodes.get(moduleId).isBarrel = true;
+            }
         }
         containsEdges.push({
             sourceId: dir === '.' ? `module:${relPath}` : moduleId,

package/dist/src/cortex/stage-0-structure.js.map

@@ -1 +1 @@
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+{"version":3,"file":"stage-0-structure.js","sourceRoot":"","sources":["../../../src/cortex/stage-0-structure.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AACvC,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAC;AAC5C,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAC;AAIlD,MAAM,iBAAiB,GAAG,8DAA8D,CAAC;AACzF,MAAM,gBAAgB,GAAG,sBAAsB,CAAC;AAEhD,SAAS,YAAY,CAAC,OAAe;IACjC,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAClC,IAAI,SAAS,GAAG,KAAK,CAAC;IACtB,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACvB,IAAI,gBAAgB,CAAC,IAAI,CAAC,IAAI,CAAC;YAAE,SAAS;QAC1C,IAAI,iBAAiB,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;YAC/B,SAAS,GAAG,IAAI,CAAC;YACjB,SAAS;QACb,CAAC;QACD,OAAO,KAAK,CAAC;IACjB,CAAC;IACD,OAAO,SAAS,CAAC;AACrB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,SAAS,CAC3B,IAAsB,EACtB,OAAe,EACf,OAAqD;IAErD,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IACzB,MAAM,MAAM,GAAiB,EAAE,CAAC;IAChC,IAAI,cAAc,GAAG,CAAC,CAAC;IACvB,IAAI,YAAY,GAAG,CAAC,CAAC;IACrB,IAAI,YAAY,GAAG,CAAC,CAAC;IAErB,MAAM,aAAa,GAAG,OAAO,EAAE,WAAW;QACtC,CAAC,CAAC,OAAO,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC;QAC1D,CAAC,CAAC,MAAM,SAAS,CAAC,OAAO,CAAC,CAAC;IAE/B,MAAM,SAAS,GAAe,EAAE,CAAC;IACjC,MAAM,WAAW,GAA4B,IAAI,GAAG,EAAE,CAAC;IACvD,MAAM,aAAa,GAAmB,EAAE,CAAC;IAEzC,KAAK,MAAM,OAAO,IAAI,aAAa,EAAE,CAAC;QAClC,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;QAChD,MAAM,MAAM,GAAG,QAAQ,OAAO,EAAE,CAAC;QACjC,MAAM,QAAQ,GAAG,cAAc,CAAC,OAAO,CAAC,CAAC;QAEzC,IAAI,OAAe,CAAC;QACpB,IAAI,CAAC;YACD,OAAO,GAAG,YAAY,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;QAC7C,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACX,MAAM,CAAC,IAAI,CAAC;gBACR,QAAQ,EAAE,OAAO;gBACjB,KAAK,EAAE,CAAC;gBACR,OAAO,EAAE,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC;aAC5D,CAAC,CAAC;YACH,SAAS;QACb,CAAC;QAED,MAAM,IAAI,GAAG,eAAe,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;QAE/C,IAAI,CAAC,OAAO,EAAE,KAAK,IAAI,CAAC,CAAC,MAAM,IAAI,CAAC,aAAa,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,EAAE,CAAC;YAC/D,SAAS;QACb,CAAC;QAED,cAAc,EAAE,CAAC;QAEjB,SAAS,CAAC,IAAI,CAAC;YACX,EAAE,EAAE,MAAM;YACV,IAAI,EAAE,OAAO;YACb,IAAI;YACJ,QAAQ;YACR,UAAU,EAAE,CAAC;YACb,WAAW,EAAE,IAAI,IAAI,EAAE;SAC1B,CAAC,CAAC;QAEH,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;QAClC,MAAM,QAAQ,GAAG,UAAU,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QACzD,MAAM,MAAM,GACR,QAAQ,KAAK,YAAY,IAAI,QAAQ,KAAK,YAAY,CAAC,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;QAE3F,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YACd,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC;gBAC7B,WAAW,CAAC,GAAG,CAAC,QAAQ,EAAE;oBACtB,EAAE,EAAE,UAAU,OAAO,EAAE;oBACvB,IAAI,EAAE,OAAO;oBACb,QAAQ,EAAE,MAAM;iBACnB,CAAC,CAAC;YACP,CAAC;iBAAM,IAAI,MAAM,EAAE,CAAC;gBAChB,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAE,CAAC,QAAQ,GAAG,IAAI,CAAC;YAC/C,CAAC;QACL,CAAC;QAED,IAAI,GAAG,KAAK,GAAG,EAAE,CAAC;YACd,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC;gBAC7B,WAAW,CAAC,GAAG,CAAC,QAAQ,EAAE;oBACtB,EAAE,EAAE,QAAQ;oBACZ,IAAI,EAAE,GAAG;oBACT,QAAQ,EAAE,MAAM;iBACnB,CAAC,CAAC;YACP,CAAC;iBAAM,IAAI,MAAM,EAAE,CAAC;gBAChB,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAE,CAAC,QAAQ,GAAG,IAAI,CAAC;YAC/C,CAAC;QACL,CAAC;QAED,aAAa,CAAC,IAAI,CAAC;YACf,QAAQ,EAAE,GAAG,KAAK,GAAG,CAAC,CAAC,CAAC,UAAU,OAAO,EAAE,CAAC,CAAC,CAAC,QAAQ;YACtD,QAAQ,EAAE,MAAM;YAChB,UAAU,EAAE,GAAG;YACf,KAAK,EAAE,CAAC;YACR,MAAM,EAAE,IAAI;SACf,CAAC,CAAC;IACP,CAAC;IAED,KAAK,MAAM,IAAI,IAAI,SAAS,EAAE,CAAC;QAC3B,MAAM,IAAI,CAAC,cAAc,CAAC,IAAI,CAAC,CAAC;QAChC,YAAY,EAAE,CAAC;IACnB,CAAC;IAED,MAAM,OAAO,GAAG,KAAK,CAAC,IAAI,CAAC,WAAW,CAAC,MAAM,EAAE,CAAC,CAAC;IACjD,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACrB,MAAM,IAAI,CAAC,iBAAiB,CAAC,OAAO,CAAC,CAAC;QACtC,YAAY,IAAI,OAAO,CAAC,MAAM,CAAC;IACnC,CAAC;IAED,IAAI,aAAa,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC3B,MAAM,IAAI,CAAC,mBAAmB,CAAC,aAAa,CAAC,CAAC;QAC9C,YAAY,IAAI,aAAa,CAAC,MAAM,CAAC;IACzC,CAAC;IAED,OAAO;QACH,KAAK,EAAE,CAAC;QACR,cAAc;QACd,YAAY;QACZ,YAAY;QACZ,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,KAAK;QAC9B,MAAM;KACT,CAAC;AACN,CAAC"}

package/dist/src/cortex/stage-2-resolution.js

@@ -98,7 +98,7 @@ export async function runStage2(repo, rootDir, options) {
                 }
             }
         }
-        resolveReExportChains(symbolTable, rootDir, new Set());
+        resolveReExportChains(symbolTable, rootDir);
         if (edges.length > 0) {
             await repo.insertImportsEdges(edges);
             edgesCreated += edges.length;
@@ -283,9 +283,9 @@ function isDirectory(p) {
         return false;
     }
 }
-function resolveReExportChains(symbolTable, rootDir, visited) {
+function resolveReExportChains(symbolTable, rootDir) {
     for (const [key, entry] of symbolTable) {
-        const trueSource = followReExports(entry.originalName, entry.resolvedSourcePath, rootDir, visited);
+        const trueSource = followReExports(entry.originalName, entry.resolvedSourcePath, rootDir, new Set());
         if (trueSource && trueSource !== entry.resolvedSourcePath) {
             symbolTable.set(key, { ...entry, resolvedSourcePath: trueSource });
         }

package/dist/src/cortex/stage-2-resolution.js.map

@@ -1 +1 @@
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package/dist/src/cortex/stage-4-types.js

@@ -358,11 +358,6 @@ async function propagateTypes(repo, filePath, seedConstraints) {
             ctorTypeByVar.set(c.symbolId, c.typeName);
         }
     }
-    for (const v of variables) {
-        const calls = await repo.getCallsFrom(v.id);
-        if (calls.length > 0)
-            continue;
-    }
     for (const fn of [...functions, ...methods]) {
         const calls = await repo.getCallsFrom(fn.id);
         for (const call of calls) {

package/dist/src/cortex/stage-4-types.js.map

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package/dist/src/cortex/stage-5-flow.js

@@ -170,8 +170,9 @@ function reverseTopologicalSort(graph) {
             queue.push(id);
     }
     const sorted = [];
-    while (queue.length > 0) {
-        const node = queue.shift();
+    let qi = 0;
+    while (qi < queue.length) {
+        const node = queue[qi++];
         sorted.push(node);
         for (const neighbor of adjacency.get(node) ?? []) {
             const newDeg = (inDegree.get(neighbor) ?? 1) - 1;
@@ -180,13 +181,16 @@ function reverseTopologicalSort(graph) {
                 queue.push(neighbor);
         }
     }
+    const sortedSet = new Set(sorted);
     for (const [id] of graph) {
-        if (!sorted.includes(id))
+        if (!sortedSet.has(id))
             sorted.push(id);
     }
     return sorted.reverse();
 }
 async function processFile(repo, rootDir, file, callGraph, ctx) {
+    if (!file.language)
+        return;
     const absPath = resolve(rootDir, file.path);
     const content = readFileSync(absPath, 'utf-8');
     const grammar = getGrammar(file.language);

package/dist/src/cortex/stage-5-flow.js.map

@@ -1 +1 @@
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package/dist/src/cortex/stage-6-topology.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"stage-6-topology.d.ts","sourceRoot":"","sources":["../../../src/cortex/stage-6-topology.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AACnD,OAAO,KAAK,EAAE,WAAW,EAAc,MAAM,YAAY,CAAC;AAC1D,OAAO,KAAK,EAAE,aAAa,EAAE,eAAe,EAAa,MAAM,qBAAqB,CAAC;AAErF,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAiBpD,wBAAsB,eAAe,CAAC,IAAI,EAAE,gBAAgB,GAAG,OAAO,CAAC,aAAa,CAAC,CAqHpF;AAED,wBAAgB,qBAAqB,CAAC,KAAK,EAAE,aAAa,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CA2BlF;AAED,wBAAgB,WAAW,CAAC,KAAK,EAAE,aAAa,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAGxE;AAED,wBAAgB,cAAc,CAAC,KAAK,EAAE,aAAa,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAG3E;AAED,wBAAgB,mBAAmB,CAC/B,KAAK,EAAE,aAAa,EACpB,KAAK,EAAE,gBAAgB,GACxB,aAAa,EAAE,CA6DjB;AAED,wBAAgB,YAAY,CACxB,KAAK,EAAE,aAAa,EACpB,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GACpC,eAAe,EAAE,CA8EnB;AAED,wBAAsB,SAAS,CAC3B,IAAI,EAAE,gBAAgB,EACtB,QAAQ,EAAE,MAAM,EAChB,OAAO,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAC;IAAC,WAAW,CAAC,EAAE,MAAM,EAAE,CAAA;CAAE,GACtD,OAAO,CAAC,WAAW,CAAC,CAmItB"}

package/dist/src/cortex/stage-6-topology.js

@@ -159,7 +159,6 @@ export function traceExecutionFlows(graph, _repo) {
         const visited = new Set();
         const nodeIds = [];
         let hasAsync = false;
-        let hasErrorPath = false;
         const queue = [{ id: entry.id, depth: 0 }];
         visited.add(entry.id);
         while (queue.length > 0) {
@@ -185,12 +184,12 @@ export function traceExecutionFlows(graph, _repo) {
         if (nodeIds.length > 0) {
             const name = entry.id.split(':').pop() ?? entry.id;
             flows.push({
-                id: `flow:${name}`,
+                id: `flow:${entry.id}`,
                 name,
                 entryPointId: entry.id,
                 nodeIds,
                 hasAsync,
-                hasErrorPath,
+                hasErrorPath: false,
             });
         }
     }

package/dist/src/cortex/stage-6-topology.js.map

@@ -1 +1 @@
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package/dist/src/cortex/stage-7-intelligence.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"stage-7-intelligence.d.ts","sourceRoot":"","sources":["../../../src/cortex/stage-7-intelligence.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAOnD,OAAO,KAAK,EAAE,OAAO,EAAoB,MAAM,qBAAqB,CAAC;AACrE,OAAO,KAAK,EAAE,WAAW,EAAc,MAAM,YAAY,CAAC;AAC1D,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAE/C,UAAU,WAAW;IACjB,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,CAAC;IACjB,iBAAiB,EAAE,OAAO,CAAC;IAC3B,cAAc,EAAE,OAAO,CAAC;CAC3B;AAED,UAAU,eAAe;IACrB,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,CAAC;IACjB,OAAO,EAAE,MAAM,CAAC;IAChB,WAAW,EAAE,MAAM,CAAC;CACvB;AAED,UAAU,YAAY;IAClB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,EAAE,CAAC;CACzB;AAED,UAAU,oBAAoB;IAC1B,eAAe,EAAE,MAAM,CAAC;CAC3B;AAED,wBAAsB,eAAe,CAAC,IAAI,EAAE,gBAAgB,GAAG,OAAO,CAAC,OAAO,EAAE,CAAC,CAyEhF;AAED,wBAAsB,oBAAoB,CACtC,IAAI,EAAE,gBAAgB,EACtB,UAAU,EAAE,MAAM,GACnB,OAAO,CAAC,IAAI,CAAC,CAoEf;AAqBD,wBAAsB,SAAS,CAC3B,IAAI,EAAE,gBAAgB,EACtB,OAAO,EAAE,MAAM,EACf,OAAO,CAAC,EAAE;IAAE,KAAK,CAAC,EAAE,OAAO,CAAC;IAAC,WAAW,CAAC,EAAE,MAAM,EAAE,CAAA;CAAE,GACtD,OAAO,CAAC,WAAW,CAAC,CAoCtB;AAED,wBAAgB,qBAAqB,CACjC,UAAU,EAAE,QAAQ,EAAE,EACtB,YAAY,EAAE,WAAW,EAAE,GAC5B,OAAO,EAAE,CAkCX;AAED,wBAAgB,4BAA4B,CACxC,UAAU,EAAE,QAAQ,EAAE,EACtB,gBAAgB,EAAE,eAAe,EAAE,GACpC,OAAO,EAAE,CAqCX;AAED,wBAAgB,aAAa,CACzB,aAAa,EAAE,YAAY,EAAE,EAC7B,WAAW,EAAE,MAAM,EACnB,OAAO,EAAE,oBAAoB,GAC9B,OAAO,EAAE,CAmCX"}

package/dist/src/cortex/stage-7-intelligence.js

@@ -5,7 +5,7 @@ export async function collectFindings(repo) {
     const classes = await repo.getAllClasses();
     const methods = await repo.getAllMethods();
     const classMetrics = classes.map((cls) => {
-        const classMethods = methods.filter((m) => m.className === cls.name);
+        const classMethods = methods.filter((m) => m.className === cls.name && m.filePath === cls.filePath);
         return {
             nodeId: cls.id,
             name: cls.name,

package/dist/src/cortex/stage-7-intelligence.js.map

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package/dist/src/cortex/types.d.ts

@@ -161,11 +161,6 @@ export interface FlowPoint {
     filePath: string;
     line: number;
 }
-export type TaintLabel = string;
-export interface TaintConfig {
-    sources: string[];
-    sinks: string[];
-}
 export interface FlowsToEdge {
     sourceId: string;
     targetId: string;