symbiote-cli 0.1.4 → 0.2.1

package/dist/src/dna/profile.js

@@ -0,0 +1,183 @@
+import fs from 'node:fs';
+import path from 'node:path';
+function today() {
+    return new Date().toISOString().split('T')[0];
+}
+function computeStats(entries) {
+    const categories = [...new Set(entries.map((e) => e.category))];
+    const langCounts = new Map();
+    for (const entry of entries) {
+        for (const lang of entry.applies_to) {
+            langCounts.set(lang, (langCounts.get(lang) ?? 0) + 1);
+        }
+    }
+    const topLanguages = [...langCounts.entries()]
+        .sort((a, b) => b[1] - a[1])
+        .slice(0, 5)
+        .map(([lang]) => lang);
+    let oldestEntry = null;
+    for (const entry of entries) {
+        const firstSeen = entry.evidence.first_seen;
+        if (!oldestEntry || firstSeen < oldestEntry) {
+            oldestEntry = firstSeen;
+        }
+    }
+    const sessionIds = new Set();
+    let maxPerEntry = 0;
+    for (const entry of entries) {
+        if (entry.origin?.session_id) {
+            sessionIds.add(entry.origin.session_id);
+        }
+        maxPerEntry = Math.max(maxPerEntry, entry.evidence.sessions);
+    }
+    const totalSessions = sessionIds.size > 0 ? sessionIds.size : maxPerEntry;
+    return {
+        total_entries: entries.length,
+        categories,
+        top_languages: topLanguages,
+        oldest_entry: oldestEntry,
+        total_sessions: totalSessions,
+    };
+}
+function atomicWrite(filePath, data) {
+    const tmpPath = filePath + '.tmp';
+    fs.writeFileSync(tmpPath, data);
+    fs.renameSync(tmpPath, filePath);
+}
+export class ProfileStorage {
+    profilesDir;
+    configPath;
+    constructor(symbioteHome) {
+        this.profilesDir = path.join(symbioteHome, 'profiles');
+        this.configPath = path.join(symbioteHome, 'config.json');
+    }
+    ensurePersonalProfile(name, handle) {
+        fs.mkdirSync(this.profilesDir, { recursive: true });
+        const profilePath = this.profilePath('personal');
+        if (fs.existsSync(profilePath))
+            return;
+        const profile = {
+            version: 1,
+            profile: {
+                name,
+                handle,
+                bio: '',
+                created: today(),
+                updated: today(),
+            },
+            entries: [],
+            stats: computeStats([]),
+        };
+        this.saveProfile('personal', profile);
+        if (!fs.existsSync(this.configPath)) {
+            atomicWrite(this.configPath, JSON.stringify({ active_profile: 'personal' }, null, 4) + '\n');
+        }
+    }
+    readProfile(name) {
+        const filePath = this.profilePath(name);
+        if (!fs.existsSync(filePath))
+            return null;
+        const raw = fs.readFileSync(filePath, 'utf-8');
+        return JSON.parse(raw);
+    }
+    readActiveProfile() {
+        const name = this.getActiveProfileName();
+        const profile = this.readProfile(name);
+        if (profile)
+            return profile;
+        const fallback = this.readProfile('personal');
+        if (fallback)
+            return fallback;
+        this.ensurePersonalProfile('', '');
+        return this.readProfile('personal');
+    }
+    writeEntry(entry) {
+        const name = this.getActiveProfileName();
+        const profile = this.readProfile(name);
+        if (!profile) {
+            throw new Error(`Active profile "${name}" not found`);
+        }
+        const idx = profile.entries.findIndex((e) => e.id === entry.id);
+        if (idx >= 0) {
+            profile.entries[idx] = entry;
+        }
+        else {
+            profile.entries.push(entry);
+        }
+        profile.profile.updated = today();
+        profile.stats = computeStats(profile.entries);
+        this.saveProfile(name, profile);
+    }
+    reinforceEntry(id, sessionId) {
+        const name = this.getActiveProfileName();
+        const profile = this.readProfile(name);
+        if (!profile)
+            return;
+        const entry = profile.entries.find((e) => e.id === id);
+        if (!entry)
+            return;
+        entry.evidence.occurrences += 1;
+        entry.evidence.last_seen = today();
+        const isSameSession = entry.origin?.session_id === sessionId;
+        if (!isSameSession) {
+            entry.evidence.sessions += 1;
+        }
+        profile.profile.updated = today();
+        profile.stats = computeStats(profile.entries);
+        this.saveProfile(name, profile);
+    }
+    readEntry(id) {
+        const name = this.getActiveProfileName();
+        const profile = this.readProfile(name);
+        if (!profile)
+            return null;
+        return profile.entries.find((e) => e.id === id) ?? null;
+    }
+    deleteEntry(id) {
+        const name = this.getActiveProfileName();
+        const profile = this.readProfile(name);
+        if (!profile)
+            return;
+        profile.entries = profile.entries.filter((e) => e.id !== id);
+        profile.profile.updated = today();
+        profile.stats = computeStats(profile.entries);
+        this.saveProfile(name, profile);
+    }
+    listProfiles() {
+        if (!fs.existsSync(this.profilesDir))
+            return [];
+        return fs
+            .readdirSync(this.profilesDir)
+            .filter((f) => f.endsWith('.json'))
+            .map((f) => f.replace(/\.json$/, ''));
+    }
+    getActiveProfileName() {
+        if (!fs.existsSync(this.configPath))
+            return 'personal';
+        try {
+            const raw = fs.readFileSync(this.configPath, 'utf-8');
+            const config = JSON.parse(raw);
+            return config.active_profile ?? 'personal';
+        }
+        catch {
+            return 'personal';
+        }
+    }
+    switchProfile(name) {
+        const profilePath = this.profilePath(name);
+        if (!fs.existsSync(profilePath)) {
+            throw new Error(`Profile "${name}" does not exist`);
+        }
+        const config = { active_profile: name };
+        atomicWrite(this.configPath, JSON.stringify(config, null, 4) + '\n');
+    }
+    saveProfile(name, profile) {
+        fs.mkdirSync(this.profilesDir, { recursive: true });
+        const filePath = this.profilePath(name);
+        atomicWrite(filePath, JSON.stringify(profile, null, 4) + '\n');
+    }
+    profilePath(name) {
+        return path.join(this.profilesDir, `${name}.json`);
+    }
+}
+//# sourceMappingURL=profile.js.map

package/dist/src/dna/profile.js.map

@@ -0,0 +1 @@
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package/dist/src/dna/schema.d.ts

@@ -0,0 +1,112 @@
+import { z } from 'zod';
+export declare const DnaEvidenceSchema: z.ZodObject<{
+    first_seen: z.ZodString;
+    last_seen: z.ZodString;
+    occurrences: z.ZodNumber;
+    sessions: z.ZodNumber;
+}, z.core.$strip>;
+export declare const DnaOriginSchema: z.ZodObject<{
+    session_id: z.ZodOptional<z.ZodString>;
+    file: z.ZodOptional<z.ZodString>;
+    context: z.ZodOptional<z.ZodString>;
+}, z.core.$strip>;
+export declare const DnaEntrySchema: z.ZodObject<{
+    id: z.ZodString;
+    rule: z.ZodString;
+    reason: z.ZodDefault<z.ZodString>;
+    category: z.ZodDefault<z.ZodString>;
+    applies_to: z.ZodDefault<z.ZodArray<z.ZodString>>;
+    not_for: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    source: z.ZodDefault<z.ZodEnum<{
+        explicit: "explicit";
+        correction: "correction";
+        observed: "observed";
+    }>>;
+    status: z.ZodDefault<z.ZodEnum<{
+        rejected: "rejected";
+        approved: "approved";
+        suggested: "suggested";
+    }>>;
+    confidence: z.ZodDefault<z.ZodNumber>;
+    evidence: z.ZodDefault<z.ZodObject<{
+        first_seen: z.ZodString;
+        last_seen: z.ZodString;
+        occurrences: z.ZodNumber;
+        sessions: z.ZodNumber;
+    }, z.core.$strip>>;
+    origin: z.ZodOptional<z.ZodObject<{
+        session_id: z.ZodOptional<z.ZodString>;
+        file: z.ZodOptional<z.ZodString>;
+        context: z.ZodOptional<z.ZodString>;
+    }, z.core.$strip>>;
+}, z.core.$strip>;
+export declare const DnaProfileMetaSchema: z.ZodObject<{
+    name: z.ZodString;
+    handle: z.ZodString;
+    bio: z.ZodDefault<z.ZodString>;
+    created: z.ZodString;
+    updated: z.ZodString;
+}, z.core.$strip>;
+export declare const DnaProfileStatsSchema: z.ZodObject<{
+    total_entries: z.ZodNumber;
+    categories: z.ZodArray<z.ZodString>;
+    top_languages: z.ZodArray<z.ZodString>;
+    oldest_entry: z.ZodNullable<z.ZodString>;
+    total_sessions: z.ZodNumber;
+}, z.core.$strip>;
+export declare const DnaProfileSchema: z.ZodObject<{
+    version: z.ZodLiteral<1>;
+    profile: z.ZodObject<{
+        name: z.ZodString;
+        handle: z.ZodString;
+        bio: z.ZodDefault<z.ZodString>;
+        created: z.ZodString;
+        updated: z.ZodString;
+    }, z.core.$strip>;
+    entries: z.ZodArray<z.ZodObject<{
+        id: z.ZodString;
+        rule: z.ZodString;
+        reason: z.ZodDefault<z.ZodString>;
+        category: z.ZodDefault<z.ZodString>;
+        applies_to: z.ZodDefault<z.ZodArray<z.ZodString>>;
+        not_for: z.ZodOptional<z.ZodArray<z.ZodString>>;
+        source: z.ZodDefault<z.ZodEnum<{
+            explicit: "explicit";
+            correction: "correction";
+            observed: "observed";
+        }>>;
+        status: z.ZodDefault<z.ZodEnum<{
+            rejected: "rejected";
+            approved: "approved";
+            suggested: "suggested";
+        }>>;
+        confidence: z.ZodDefault<z.ZodNumber>;
+        evidence: z.ZodDefault<z.ZodObject<{
+            first_seen: z.ZodString;
+            last_seen: z.ZodString;
+            occurrences: z.ZodNumber;
+            sessions: z.ZodNumber;
+        }, z.core.$strip>>;
+        origin: z.ZodOptional<z.ZodObject<{
+            session_id: z.ZodOptional<z.ZodString>;
+            file: z.ZodOptional<z.ZodString>;
+            context: z.ZodOptional<z.ZodString>;
+        }, z.core.$strip>>;
+    }, z.core.$strip>>;
+    stats: z.ZodObject<{
+        total_entries: z.ZodNumber;
+        categories: z.ZodArray<z.ZodString>;
+        top_languages: z.ZodArray<z.ZodString>;
+        oldest_entry: z.ZodNullable<z.ZodString>;
+        total_sessions: z.ZodNumber;
+    }, z.core.$strip>;
+}, z.core.$strip>;
+export type DnaEntry = z.infer<typeof DnaEntrySchema>;
+export type DnaProfile = z.infer<typeof DnaProfileSchema>;
+export type DnaProfileMeta = z.infer<typeof DnaProfileMetaSchema>;
+export type DnaProfileStats = z.infer<typeof DnaProfileStatsSchema>;
+export type DnaEvidence = z.infer<typeof DnaEvidenceSchema>;
+export type DnaOrigin = z.infer<typeof DnaOriginSchema>;
+export type DnaSource = DnaEntry['source'];
+export type DnaStatus = DnaEntry['status'];
+//# sourceMappingURL=schema.d.ts.map

package/dist/src/dna/schema.d.ts.map

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package/dist/src/dna/schema.js

@@ -0,0 +1,51 @@
+import { z } from 'zod';
+export const DnaEvidenceSchema = z.object({
+    first_seen: z.string(),
+    last_seen: z.string(),
+    occurrences: z.number().int().min(0),
+    sessions: z.number().int().min(0),
+});
+export const DnaOriginSchema = z.object({
+    session_id: z.string().optional(),
+    file: z.string().optional(),
+    context: z.string().optional(),
+});
+export const DnaEntrySchema = z.object({
+    id: z.string(),
+    rule: z.string(),
+    reason: z.string().default(''),
+    category: z.string().default('general'),
+    applies_to: z.array(z.string()).default([]),
+    not_for: z.array(z.string()).optional(),
+    source: z.enum(['explicit', 'correction', 'observed']).default('correction'),
+    status: z.enum(['suggested', 'approved', 'rejected']).default('suggested'),
+    confidence: z.number().min(0).max(1).default(0.3),
+    evidence: DnaEvidenceSchema.default(() => ({
+        first_seen: new Date().toISOString().split('T')[0],
+        last_seen: new Date().toISOString().split('T')[0],
+        occurrences: 1,
+        sessions: 0,
+    })),
+    origin: DnaOriginSchema.optional(),
+});
+export const DnaProfileMetaSchema = z.object({
+    name: z.string(),
+    handle: z.string(),
+    bio: z.string().default(''),
+    created: z.string(),
+    updated: z.string(),
+});
+export const DnaProfileStatsSchema = z.object({
+    total_entries: z.number().int(),
+    categories: z.array(z.string()),
+    top_languages: z.array(z.string()),
+    oldest_entry: z.string().nullable(),
+    total_sessions: z.number().int(),
+});
+export const DnaProfileSchema = z.object({
+    version: z.literal(1),
+    profile: DnaProfileMetaSchema,
+    entries: z.array(DnaEntrySchema),
+    stats: DnaProfileStatsSchema,
+});
+//# sourceMappingURL=schema.js.map

package/dist/src/dna/schema.js.map

@@ -0,0 +1 @@
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package/dist/src/dna/types.d.ts

@@ -1,39 +1,2 @@
-export declare const DNA_CATEGORIES: readonly ["style", "preferences", "anti-patterns", "decisions"];
-export type DnaCategory = (typeof DNA_CATEGORIES)[number];
-export declare const DNA_STATUSES: readonly ["suggested", "approved", "rejected"];
-export type DnaStatus = (typeof DNA_STATUSES)[number];
-export type DnaSource = 'correction' | 'explicit' | 'pattern';
-export interface DnaFrontmatter {
-    id: string;
-    confidence: number;
-    source: DnaSource;
-    status: DnaStatus;
-    category: DnaCategory;
-    firstSeen: string;
-    lastSeen: string;
-    occurrences: number;
-    sessionIds: string[];
-    pattern?: string;
-}
-export interface DnaEntry {
-    frontmatter: DnaFrontmatter;
-    content: string;
-}
-export interface DnaIndexEntry {
-    id: string;
-    category: DnaCategory;
-    status: DnaStatus;
-    confidence: number;
-    fileName: string;
-}
-export interface DnaIndex {
-    version: number;
-    entries: DnaIndexEntry[];
-}
-export declare function parseFrontmatter(raw: string): {
-    frontmatter: DnaFrontmatter;
-    content: string;
-} | null;
-export declare function serializeEntry(entry: DnaEntry): string;
 export declare function parseYamlBlock(block: string): Record<string, unknown> | null;
 //# sourceMappingURL=types.d.ts.map

package/dist/src/dna/types.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/dna/types.ts"],"names":[],"mappings":"AAOA,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,IAAI,CAyD5E"}

package/dist/src/dna/types.js

@@ -1,60 +1,3 @@
-export const DNA_CATEGORIES = ['style', 'preferences', 'anti-patterns', 'decisions'];
-export const DNA_STATUSES = ['suggested', 'approved', 'rejected'];
-export function parseFrontmatter(raw) {
-    if (!raw || !raw.startsWith('---'))
-        return null;
-    const endIndex = raw.indexOf('---', 3);
-    if (endIndex === -1)
-        return null;
-    const frontmatterBlock = raw.slice(3, endIndex).trim();
-    const content = raw.slice(endIndex + 3).trim();
-    const frontmatter = parseYamlBlock(frontmatterBlock);
-    if (!frontmatter || !frontmatter.id)
-        return null;
-    return {
-        frontmatter: {
-            id: String(frontmatter.id),
-            confidence: Number(frontmatter.confidence ?? 0.3),
-            source: frontmatter.source ?? 'correction',
-            status: frontmatter.status ?? 'suggested',
-            category: frontmatter.category ?? 'style',
-            firstSeen: stripQuotes(String(frontmatter.firstSeen ?? new Date().toISOString().split('T')[0])),
-            lastSeen: stripQuotes(String(frontmatter.lastSeen ?? new Date().toISOString().split('T')[0])),
-            occurrences: Number(frontmatter.occurrences ?? 1),
-            sessionIds: frontmatter.sessionIds ?? [],
-            pattern: frontmatter.pattern ? String(frontmatter.pattern) : undefined,
-        },
-        content,
-    };
-}
-export function serializeEntry(entry) {
-    const fm = entry.frontmatter;
-    const lines = [
-        '---',
-        `id: ${fm.id}`,
-        `confidence: ${fm.confidence}`,
-        `source: ${fm.source}`,
-        `status: ${fm.status}`,
-        `category: ${fm.category}`,
-        `firstSeen: "${fm.firstSeen}"`,
-        `lastSeen: "${fm.lastSeen}"`,
-        `occurrences: ${fm.occurrences}`,
-    ];
-    if (fm.sessionIds.length > 0) {
-        lines.push('sessionIds:');
-        for (const sid of fm.sessionIds) {
-            lines.push(`  - "${sid}"`);
-        }
-    }
-    else {
-        lines.push('sessionIds: []');
-    }
-    if (fm.pattern) {
-        lines.push(`pattern: "${fm.pattern}"`);
-    }
-    lines.push('---', '', entry.content, '');
-    return lines.join('\n');
-}
 function stripQuotes(s) {
     if ((s.startsWith('"') && s.endsWith('"')) || (s.startsWith("'") && s.endsWith("'"))) {
         return s.slice(1, -1);

package/dist/src/dna/types.js.map

@@ -1 +1 @@
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+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/dna/types.ts"],"names":[],"mappings":"AAAA,SAAS,WAAW,CAAC,CAAS;IAC1B,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC;QACnF,OAAO,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC1B,CAAC;IACD,OAAO,CAAC,CAAC;AACb,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,KAAa;IACxC,MAAM,MAAM,GAA4B,EAAE,CAAC;IAC3C,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAChC,IAAI,eAAe,GAAkB,IAAI,CAAC;IAC1C,IAAI,YAAY,GAAa,EAAE,CAAC;IAEhC,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACvB,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC;QAC5B,IAAI,CAAC,OAAO;YAAE,SAAS;QAEvB,IAAI,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC;YAC3B,IAAI,eAAe,EAAE,CAAC;gBAClB,YAAY,CAAC,IAAI,CAAC,WAAW,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;YAC5D,CAAC;YACD,SAAS;QACb,CAAC;QAED,IAAI,eAAe,EAAE,CAAC;YAClB,MAAM,CAAC,eAAe,CAAC,GAAG,YAAY,CAAC;YACvC,eAAe,GAAG,IAAI,CAAC;YACvB,YAAY,GAAG,EAAE,CAAC;QACtB,CAAC;QAED,MAAM,UAAU,GAAG,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;QACxC,IAAI,UAAU,KAAK,CAAC,CAAC;YAAE,SAAS;QAEhC,MAAM,GAAG,GAAG,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,IAAI,EAAE,CAAC;QAChD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,UAAU,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;QAEnD,IAAI,KAAK,KAAK,EAAE,IAAI,KAAK,KAAK,IAAI,EAAE,CAAC;YACjC,IAAI,KAAK,KAAK,IAAI,EAAE,CAAC;gBACjB,MAAM,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC;YACrB,CAAC;iBAAM,CAAC;gBACJ,eAAe,GAAG,GAAG,CAAC;gBACtB,YAAY,GAAG,EAAE,CAAC;YACtB,CAAC;YACD,SAAS;QACb,CAAC;QAED,MAAM,QAAQ,GAAG,WAAW,CAAC,KAAK,CAAC,CAAC;QACpC,IAAI,oBAAoB,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC;YACtC,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAC;QAC3B,CAAC;aAAM,CAAC;YACJ,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC;YAC1B,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,KAAK,KAAK,EAAE,EAAE,CAAC;gBAC9B,MAAM,CAAC,GAAG,CAAC,GAAG,GAAG,CAAC;YACtB,CAAC;iBAAM,CAAC;gBACJ,MAAM,CAAC,GAAG,CAAC,GAAG,QAAQ,CAAC;YAC3B,CAAC;QACL,CAAC;IACL,CAAC;IAED,IAAI,eAAe,EAAE,CAAC;QAClB,MAAM,CAAC,eAAe,CAAC,GAAG,YAAY,CAAC;IAC3C,CAAC;IAED,OAAO,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC;AAC1D,CAAC"}

package/dist/src/hooks/dna-checker.d.ts

@@ -1,3 +1,3 @@
-import type { DnaEntry } from '#dna/types.js';
+import type { DnaEntry } from '#dna/schema.js';
 export declare function checkDnaViolations(newContent: string, filePath: string, dnaEntries: DnaEntry[]): string | null;
 //# sourceMappingURL=dna-checker.d.ts.map

package/dist/src/hooks/dna-checker.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"dna-checker.d.ts","sourceRoot":"","sources":["../../../src/hooks/dna-checker.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAO9C,wBAAgB,kBAAkB,CAC9B,UAAU,EAAE,MAAM,EAClB,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE,QAAQ,EAAE,GACvB,MAAM,GAAG,IAAI,CAgBf"}
+{"version":3,"file":"dna-checker.d.ts","sourceRoot":"","sources":["../../../src/hooks/dna-checker.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAO/C,wBAAgB,kBAAkB,CAC9B,UAAU,EAAE,MAAM,EAClB,QAAQ,EAAE,MAAM,EAChB,UAAU,EAAE,QAAQ,EAAE,GACvB,MAAM,GAAG,IAAI,CAkBf"}

package/dist/src/hooks/dna-checker.js

@@ -4,17 +4,18 @@ function basename(filePath) {
 }
 export function checkDnaViolations(newContent, filePath, dnaEntries) {
     for (const entry of dnaEntries) {
-        const pattern = entry.frontmatter.pattern;
-        if (!pattern)
+        if (entry.category !== 'anti-patterns')
             continue;
-        try {
-            const regex = new RegExp(pattern, 'm');
-            if (regex.test(newContent)) {
-                return `DNA violation in ${basename(filePath)}: ${entry.content}`;
-            }
-        }
-        catch {
-            // invalid regex in DNA entry — skip
+        const keywords = entry.rule
+            .toLowerCase()
+            .split(/\s+/)
+            .filter((w) => w.length > 3);
+        if (keywords.length === 0)
+            continue;
+        const lowerContent = newContent.toLowerCase();
+        const matched = keywords.some((kw) => lowerContent.includes(kw));
+        if (matched) {
+            return `DNA violation in ${basename(filePath)}: ${entry.rule}`;
         }
     }
     return null;

package/dist/src/hooks/dna-checker.js.map

@@ -1 +1 @@
-{"version":3,"file":"dna-checker.js","sourceRoot":"","sources":["../../../src/hooks/dna-checker.ts"],"names":[],"mappings":"AAEA,SAAS,QAAQ,CAAC,QAAgB;IAC9B,MAAM,KAAK,GAAG,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;IACxC,OAAO,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC;AAC7D,CAAC;AAED,MAAM,UAAU,kBAAkB,CAC9B,UAAkB,EAClB,QAAgB,EAChB,UAAsB;IAEtB,KAAK,MAAM,KAAK,IAAI,UAAU,EAAE,CAAC;QAC7B,MAAM,OAAO,GAAG,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC;QAC1C,IAAI,CAAC,OAAO;YAAE,SAAS;QAEvB,IAAI,CAAC;YACD,MAAM,KAAK,GAAG,IAAI,MAAM,CAAC,OAAO,EAAE,GAAG,CAAC,CAAC;YACvC,IAAI,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,EAAE,CAAC;gBACzB,OAAO,oBAAoB,QAAQ,CAAC,QAAQ,CAAC,KAAK,KAAK,CAAC,OAAO,EAAE,CAAC;YACtE,CAAC;QACL,CAAC;QAAC,MAAM,CAAC;YACL,oCAAoC;QACxC,CAAC;IACL,CAAC;IAED,OAAO,IAAI,CAAC;AAChB,CAAC"}
+{"version":3,"file":"dna-checker.js","sourceRoot":"","sources":["../../../src/hooks/dna-checker.ts"],"names":[],"mappings":"AAEA,SAAS,QAAQ,CAAC,QAAgB;IAC9B,MAAM,KAAK,GAAG,QAAQ,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC;IACxC,OAAO,KAAK,IAAI,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC;AAC7D,CAAC;AAED,MAAM,UAAU,kBAAkB,CAC9B,UAAkB,EAClB,QAAgB,EAChB,UAAsB;IAEtB,KAAK,MAAM,KAAK,IAAI,UAAU,EAAE,CAAC;QAC7B,IAAI,KAAK,CAAC,QAAQ,KAAK,eAAe;YAAE,SAAS;QAEjD,MAAM,QAAQ,GAAG,KAAK,CAAC,IAAI;aACtB,WAAW,EAAE;aACb,KAAK,CAAC,KAAK,CAAC;aACZ,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QACjC,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YAAE,SAAS;QAEpC,MAAM,YAAY,GAAG,UAAU,CAAC,WAAW,EAAE,CAAC;QAC9C,MAAM,OAAO,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,YAAY,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;QACjE,IAAI,OAAO,EAAE,CAAC;YACV,OAAO,oBAAoB,QAAQ,CAAC,QAAQ,CAAC,KAAK,KAAK,CAAC,IAAI,EAAE,CAAC;QACnE,CAAC;IACL,CAAC;IAED,OAAO,IAAI,CAAC;AAChB,CAAC"}

package/dist/src/hooks/handlers/post-tool-use.d.ts

@@ -3,7 +3,7 @@ import type { SessionStore } from '#hooks/session-store.js';
 import type { AttentionSet } from '#hooks/attention.js';
 import type { GraphInstance } from '#core/types.js';
 import type { ParseResult } from '#core/parser.js';
-import type { DnaEntry } from '#dna/types.js';
+import type { DnaEntry } from '#dna/schema.js';
 import { EventBus } from '#events/bus.js';
 type SymbolSnapshot = {
     name: string;

package/dist/src/hooks/handlers/post-tool-use.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"post-tool-use.d.ts","sourceRoot":"","sources":["../../../../src/hooks/handlers/post-tool-use.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAC5E,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AACxD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AACpD,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAC;AACnD,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAI1C,KAAK,cAAc,GAAG;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC;AAEzF,MAAM,WAAW,wBAAwB;IACrC,WAAW,EAAE,MAAM,CAAC;IACpB,aAAa,EAAE,CAAC,YAAY,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;IACvD,YAAY,EAAE,MAAM,OAAO,CAAC,IAAI,CAAC,CAAC;IAClC,YAAY,EAAE,YAAY,CAAC;IAC3B,SAAS,EAAE,YAAY,CAAC;IACxB,QAAQ,EAAE,QAAQ,CAAC;IACnB,KAAK,EAAE,aAAa,CAAC;IACrB,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,cAAc,EAAE,CAAC,CAAC;IAC/C,WAAW,CAAC,EAAE,CAAC,QAAQ,EAAE,MAAM,KAAK,WAAW,GAAG,IAAI,CAAC;IACvD,UAAU,CAAC,EAAE,QAAQ,EAAE,CAAC;CAC3B;AAyBD,qBAAa,kBAAkB;IAC3B,OAAO,CAAC,MAAM,CAA2B;gBAE7B,MAAM,EAAE,wBAAwB;IAItC,MAAM,CAAC,OAAO,EAAE,kBAAkB,GAAG,OAAO,CAAC,gBAAgB,CAAC;YAQtD,cAAc;IA8H5B,OAAO,CAAC,oBAAoB;IAyD5B,OAAO,CAAC,uBAAuB;CAwBlC"}
+{"version":3,"file":"post-tool-use.d.ts","sourceRoot":"","sources":["../../../../src/hooks/handlers/post-tool-use.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,kBAAkB,EAAE,gBAAgB,EAAE,MAAM,iBAAiB,CAAC;AAC5E,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AACxD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AACpD,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAC;AACnD,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAC/C,OAAO,EAAE,QAAQ,EAAE,MAAM,gBAAgB,CAAC;AAI1C,KAAK,cAAc,GAAG;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,IAAI,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC;AAEzF,MAAM,WAAW,wBAAwB;IACrC,WAAW,EAAE,MAAM,CAAC;IACpB,aAAa,EAAE,CAAC,YAAY,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;IACvD,YAAY,EAAE,MAAM,OAAO,CAAC,IAAI,CAAC,CAAC;IAClC,YAAY,EAAE,YAAY,CAAC;IAC3B,SAAS,EAAE,YAAY,CAAC;IACxB,QAAQ,EAAE,QAAQ,CAAC;IACnB,KAAK,EAAE,aAAa,CAAC;IACrB,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,cAAc,EAAE,CAAC,CAAC;IAC/C,WAAW,CAAC,EAAE,CAAC,QAAQ,EAAE,MAAM,KAAK,WAAW,GAAG,IAAI,CAAC;IACvD,UAAU,CAAC,EAAE,QAAQ,EAAE,CAAC;CAC3B;AAyBD,qBAAa,kBAAkB;IAC3B,OAAO,CAAC,MAAM,CAA2B;gBAE7B,MAAM,EAAE,wBAAwB;IAItC,MAAM,CAAC,OAAO,EAAE,kBAAkB,GAAG,OAAO,CAAC,gBAAgB,CAAC;YAQtD,cAAc;IA8H5B,OAAO,CAAC,oBAAoB;IAyD5B,OAAO,CAAC,uBAAuB;CAwBlC"}

package/dist/src/hooks/handlers/pre-tool-use.js

@@ -231,7 +231,7 @@ export class PreToolUseHandler {
         const activeEntries = this.dnaEngine
             .getActiveEntries()
             .slice(0, 10)
-            .map((e) => `[${e.frontmatter.category}] ${e.content}`);
+            .map((e) => `[${e.category}] ${e.rule}`);
         if (activeEntries.length > 0) {
             lines.push('Developer DNA (active):');
             for (const entry of activeEntries) {

package/dist/src/hooks/handlers/pre-tool-use.js.map

@@ -1 +1 @@
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