npm - symbiote-cli - Versions diffs - 0.1.1 → 0.1.3 - Mend

symbiote-cli 0.1.1 → 0.1.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (195) hide show

package/README.md +4 -3
package/dist/bin/symbiote.js +0 -0
package/dist/src/brain/health/constraint-checker.d.ts +2 -4
package/dist/src/brain/health/constraint-checker.d.ts.map +1 -1
package/dist/src/brain/health/constraint-checker.js +2 -9
package/dist/src/brain/health/constraint-checker.js.map +1 -1
package/dist/src/brain/health/coupling-analyzer.d.ts +1 -4
package/dist/src/brain/health/coupling-analyzer.d.ts.map +1 -1
package/dist/src/brain/health/coupling-analyzer.js +3 -6
package/dist/src/brain/health/coupling-analyzer.js.map +1 -1
package/dist/src/brain/health/cycle-detector.d.ts +2 -4
package/dist/src/brain/health/cycle-detector.d.ts.map +1 -1
package/dist/src/brain/health/cycle-detector.js +33 -48
package/dist/src/brain/health/cycle-detector.js.map +1 -1
package/dist/src/brain/health/dead-code-detector.d.ts +1 -4
package/dist/src/brain/health/dead-code-detector.d.ts.map +1 -1
package/dist/src/brain/health/dead-code-detector.js +13 -17
package/dist/src/brain/health/dead-code-detector.js.map +1 -1
package/dist/src/brain/health/index.d.ts +5 -9
package/dist/src/brain/health/index.d.ts.map +1 -1
package/dist/src/brain/health/index.js +56 -19
package/dist/src/brain/health/index.js.map +1 -1
package/dist/src/brain/intent.d.ts +2 -0
package/dist/src/brain/intent.d.ts.map +1 -1
package/dist/src/brain/intent.js.map +1 -1
package/dist/src/brain/metrics.d.ts +45 -0
package/dist/src/brain/metrics.d.ts.map +1 -0
package/dist/src/brain/metrics.js +136 -0
package/dist/src/brain/metrics.js.map +1 -0
package/dist/src/commands/hooks.d.ts.map +1 -1
package/dist/src/commands/hooks.js +16 -31
package/dist/src/commands/hooks.js.map +1 -1
package/dist/src/commands/mcp.d.ts.map +1 -1
package/dist/src/commands/mcp.js +14 -3
package/dist/src/commands/mcp.js.map +1 -1
package/dist/src/commands/serve.d.ts.map +1 -1
package/dist/src/commands/serve.js +2 -12
package/dist/src/commands/serve.js.map +1 -1
package/dist/src/commands/shared.d.ts +1 -0
package/dist/src/commands/shared.d.ts.map +1 -1
package/dist/src/commands/shared.js +34 -0
package/dist/src/commands/shared.js.map +1 -1
package/dist/src/core/search.d.ts +1 -0
package/dist/src/core/search.d.ts.map +1 -1
package/dist/src/core/search.js +18 -7
package/dist/src/core/search.js.map +1 -1
package/dist/src/cortex/repository.d.ts +2 -25
package/dist/src/cortex/repository.d.ts.map +1 -1
package/dist/src/cortex/repository.js +1 -112
package/dist/src/cortex/repository.js.map +1 -1
package/dist/src/cortex/schema.js +12 -12
package/dist/src/dna/engine.d.ts +1 -1
package/dist/src/dna/engine.d.ts.map +1 -1
package/dist/src/dna/engine.js +4 -4
package/dist/src/dna/engine.js.map +1 -1
package/dist/src/dna/types.d.ts +1 -0
package/dist/src/dna/types.d.ts.map +1 -1
package/dist/src/dna/types.js +4 -0
package/dist/src/dna/types.js.map +1 -1
package/dist/src/events/types.d.ts +1 -1
package/dist/src/events/types.d.ts.map +1 -1
package/dist/src/events/types.js +4 -10
package/dist/src/events/types.js.map +1 -1
package/dist/src/hooks/attention.d.ts +19 -2
package/dist/src/hooks/attention.d.ts.map +1 -1
package/dist/src/hooks/attention.js +67 -5
package/dist/src/hooks/attention.js.map +1 -1
package/dist/src/hooks/dna-checker.d.ts +3 -0
package/dist/src/hooks/dna-checker.d.ts.map +1 -0
package/dist/src/hooks/dna-checker.js +22 -0
package/dist/src/hooks/dna-checker.js.map +1 -0
package/dist/src/hooks/handlers/post-tool-use.d.ts +14 -0
package/dist/src/hooks/handlers/post-tool-use.d.ts.map +1 -1
package/dist/src/hooks/handlers/post-tool-use.js +139 -9
package/dist/src/hooks/handlers/post-tool-use.js.map +1 -1
package/dist/src/hooks/handlers/pre-tool-use.d.ts +21 -0
package/dist/src/hooks/handlers/pre-tool-use.d.ts.map +1 -1
package/dist/src/hooks/handlers/pre-tool-use.js +167 -6
package/dist/src/hooks/handlers/pre-tool-use.js.map +1 -1
package/dist/src/hooks/handlers/session-start.d.ts +12 -4
package/dist/src/hooks/handlers/session-start.d.ts.map +1 -1
package/dist/src/hooks/handlers/session-start.js +80 -25
package/dist/src/hooks/handlers/session-start.js.map +1 -1
package/dist/src/hooks/handlers/user-prompt-submit.d.ts +8 -6
package/dist/src/hooks/handlers/user-prompt-submit.d.ts.map +1 -1
package/dist/src/hooks/handlers/user-prompt-submit.js +45 -20
package/dist/src/hooks/handlers/user-prompt-submit.js.map +1 -1
package/dist/src/hooks/symbol-cache.d.ts +18 -0
package/dist/src/hooks/symbol-cache.d.ts.map +1 -0
package/dist/src/hooks/symbol-cache.js +23 -0
package/dist/src/hooks/symbol-cache.js.map +1 -0
package/dist/src/init/agent-connector.d.ts +4 -0
package/dist/src/init/agent-connector.d.ts.map +1 -1
package/dist/src/init/agent-connector.js +13 -11
package/dist/src/init/agent-connector.js.map +1 -1
package/dist/src/mcp/context.d.ts +15 -0
package/dist/src/mcp/context.d.ts.map +1 -1
package/dist/src/mcp/context.js +55 -1
package/dist/src/mcp/context.js.map +1 -1
package/dist/src/mcp/http-api.d.ts.map +1 -1
package/dist/src/mcp/http-api.js +27 -6
package/dist/src/mcp/http-api.js.map +1 -1
package/dist/src/mcp/proxy-handler.d.ts +4 -0
package/dist/src/mcp/proxy-handler.d.ts.map +1 -0
package/dist/src/mcp/proxy-handler.js +129 -0
package/dist/src/mcp/proxy-handler.js.map +1 -0
package/dist/src/mcp/proxy-server.d.ts +5 -0
package/dist/src/mcp/proxy-server.d.ts.map +1 -0
package/dist/src/mcp/proxy-server.js +206 -0
package/dist/src/mcp/proxy-server.js.map +1 -0
package/dist/src/mcp/server.d.ts.map +1 -1
package/dist/src/mcp/server.js +32 -20
package/dist/src/mcp/server.js.map +1 -1
package/dist/src/mcp/tools/dna-tools.d.ts +1 -0
package/dist/src/mcp/tools/dna-tools.d.ts.map +1 -1
package/dist/src/mcp/tools/dna-tools.js +5 -1
package/dist/src/mcp/tools/dna-tools.js.map +1 -1
package/dist/src/mcp/tools/trace-tools.d.ts +34 -0
package/dist/src/mcp/tools/trace-tools.d.ts.map +1 -1
package/dist/src/mcp/tools/trace-tools.js +6 -6
package/dist/src/mcp/tools/trace-tools.js.map +1 -1
package/dist/src/storage/repository.d.ts +1 -0
package/dist/src/storage/repository.d.ts.map +1 -1
package/dist/src/storage/repository.js.map +1 -1
package/dist/tsconfig.tsbuildinfo +1 -1
package/package.json +1 -2
package/LICENSE +0 -21
package/dist/bin/synapse.d.ts +0 -3
package/dist/bin/synapse.d.ts.map +0 -1
package/dist/bin/synapse.js +0 -369
package/dist/bin/synapse.js.map +0 -1
package/dist/src/brain/embeddings.d.ts +0 -9
package/dist/src/brain/embeddings.d.ts.map +0 -1
package/dist/src/brain/embeddings.js +0 -24
package/dist/src/brain/embeddings.js.map +0 -1
package/dist/src/brain/health.d.ts +0 -30
package/dist/src/brain/health.d.ts.map +0 -1
package/dist/src/brain/health.js +0 -147
package/dist/src/brain/health.js.map +0 -1
package/dist/src/commands/init.d.ts +0 -2
package/dist/src/commands/init.d.ts.map +0 -1
package/dist/src/commands/init.js +0 -132
package/dist/src/commands/init.js.map +0 -1
package/dist/src/hooks/post-tool-use.d.ts +0 -12
package/dist/src/hooks/post-tool-use.d.ts.map +0 -1
package/dist/src/hooks/post-tool-use.js +0 -33
package/dist/src/hooks/post-tool-use.js.map +0 -1
package/dist/src/hooks/pre-tool-use.d.ts +0 -24
package/dist/src/hooks/pre-tool-use.d.ts.map +0 -1
package/dist/src/hooks/pre-tool-use.js +0 -117
package/dist/src/hooks/pre-tool-use.js.map +0 -1
package/dist/src/init/dna-bootstrap.d.ts +0 -10
package/dist/src/init/dna-bootstrap.d.ts.map +0 -1
package/dist/src/init/dna-bootstrap.js +0 -32
package/dist/src/init/dna-bootstrap.js.map +0 -1
package/dist/src/init/index.d.ts +0 -29
package/dist/src/init/index.d.ts.map +0 -1
package/dist/src/init/index.js +0 -81
package/dist/src/init/index.js.map +0 -1
package/dist/src/init/overview-generator.d.ts +0 -5
package/dist/src/init/overview-generator.d.ts.map +0 -1
package/dist/src/init/overview-generator.js +0 -85
package/dist/src/init/overview-generator.js.map +0 -1
package/dist/src/init/parsers/eslint-config.d.ts +0 -10
package/dist/src/init/parsers/eslint-config.d.ts.map +0 -1
package/dist/src/init/parsers/eslint-config.js +0 -50
package/dist/src/init/parsers/eslint-config.js.map +0 -1
package/dist/src/init/parsers/markdown-rules.d.ts +0 -3
package/dist/src/init/parsers/markdown-rules.d.ts.map +0 -1
package/dist/src/init/parsers/markdown-rules.js +0 -90
package/dist/src/init/parsers/markdown-rules.js.map +0 -1
package/dist/src/init/parsers/package-json.d.ts +0 -17
package/dist/src/init/parsers/package-json.d.ts.map +0 -1
package/dist/src/init/parsers/package-json.js +0 -75
package/dist/src/init/parsers/package-json.js.map +0 -1
package/dist/src/init/parsers/prettier-config.d.ts +0 -16
package/dist/src/init/parsers/prettier-config.d.ts.map +0 -1
package/dist/src/init/parsers/prettier-config.js +0 -30
package/dist/src/init/parsers/prettier-config.js.map +0 -1
package/dist/src/init/parsers/tsconfig.d.ts +0 -32
package/dist/src/init/parsers/tsconfig.d.ts.map +0 -1
package/dist/src/init/parsers/tsconfig.js +0 -64
package/dist/src/init/parsers/tsconfig.js.map +0 -1
package/dist/src/init/parsers/types.d.ts +0 -27
package/dist/src/init/parsers/types.d.ts.map +0 -1
package/dist/src/init/parsers/types.js +0 -2
package/dist/src/init/parsers/types.js.map +0 -1
package/dist/src/init/project-analyzer.d.ts +0 -3
package/dist/src/init/project-analyzer.d.ts.map +0 -1
package/dist/src/init/project-analyzer.js +0 -102
package/dist/src/init/project-analyzer.js.map +0 -1
package/dist/src/init/rule-importer.d.ts +0 -3
package/dist/src/init/rule-importer.d.ts.map +0 -1
package/dist/src/init/rule-importer.js +0 -101
package/dist/src/init/rule-importer.js.map +0 -1

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package/dist/src/cortex/repository.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 import type { SymbioteDB } from '#storage/db.js';
 import type { FileNode, FunctionNode, ClassNode, MethodNode, InterfaceNode, TypeNode, VariableNode, ModuleNode, CallsEdge, ImportsEdge, ExtendsEdge, ImplementsEdge, ContainsEdge, FlowsToEdge, ReadsEdge, WritesEdge, ReturnsEdge, TypeConstraint, GenericInstantiation, SymbolTableEntry } from './types.js';
-import type { ExecutionFlow, TemporalSnapshot } from './topology-types.js';
+import type { TemporalSnapshot } from './topology-types.js';
 interface NodeMetricsUpdate {
     nodeId: string;
     community: number;
@@ -67,8 +67,6 @@ export declare class CortexRepository {
     getFunctionsByFile(filePath: string): Promise<FunctionNode[]>;
     getClassesByFile(filePath: string): Promise<ClassNode[]>;
     getMethodsByFile(filePath: string): Promise<MethodNode[]>;
-    getInterfacesByFile(filePath: string): Promise<InterfaceNode[]>;
-    getTypesByFile(filePath: string): Promise<TypeNode[]>;
     getVariablesByFile(filePath: string): Promise<VariableNode[]>;
     deleteCallEdgesBySourceIds(sourceIds: string[]): Promise<void>;
     getCallsFrom(sourceId: string): Promise<CallsEdge[]>;
@@ -87,11 +85,9 @@ export declare class CortexRepository {
     getFlowsFrom(sourceId: string): Promise<FlowsToEdge[]>;
     getFlowsTo(targetId: string): Promise<FlowsToEdge[]>;
     getReadsFrom(sourceId: string): Promise<ReadsEdge[]>;
-    getReadsOf(targetId: string): Promise<ReadsEdge[]>;
     getWritesFrom(sourceId: string): Promise<WritesEdge[]>;
     getWritesTo(targetId: string): Promise<WritesEdge[]>;
     getReturnsFrom(sourceId: string): Promise<ReturnsEdge[]>;
-    getReturnsTo(targetId: string): Promise<ReturnsEdge[]>;
     getImplementorsOf(interfaceId: string): Promise<ImplementsEdge[]>;
     getReferencesForSymbol(symbolId: string): Promise<{
         callers: CallsEdge[];
@@ -136,6 +132,7 @@ export declare class CortexRepository {
         lineStart: number;
         lineEnd: number;
         kind: string;
+        isExported: boolean;
     }[]>;
     getSymbolById(id: string): Promise<{
         id: string;
@@ -177,8 +174,6 @@ export declare class CortexRepository {
     private mapFunctionNodeRow;
     private mapClassNodeRow;
     private mapMethodNodeRow;
-    private mapInterfaceNodeRow;
-    private mapTypeNodeRow;
     private mapVariableNodeRow;
     private mapModuleNodeRow;
     private mapCallsEdgeRow;
@@ -192,19 +187,6 @@ export declare class CortexRepository {
     private mapReturnsEdgeRow;
     private mapTypeConstraintRow;
     private mapGenericInstantiationRow;
-    insertFunction(node: FunctionNode): Promise<void>;
-    getFunction(id: string): Promise<FunctionNode | null>;
-    insertClass(node: ClassNode): Promise<void>;
-    getClass(id: string): Promise<ClassNode | null>;
-    insertMethod(node: MethodNode): Promise<void>;
-    getMethod(id: string): Promise<MethodNode | null>;
-    insertFileNode(node: {
-        id: string;
-        path: string;
-        extension: string;
-        language: string;
-        depthLevel: number;
-    }): Promise<void>;
     updateNodeMetrics(nodeId: string, metrics: {
         community: number;
         pageRank: number;
@@ -217,15 +199,10 @@ export declare class CortexRepository {
     getAllFunctions(): Promise<FunctionNode[]>;
     getAllClasses(): Promise<ClassNode[]>;
     getAllMethods(): Promise<MethodNode[]>;
-    insertFlow(flow: ExecutionFlow): Promise<void>;
-    getFlow(id: string): Promise<ExecutionFlow | null>;
-    getAllFlows(): Promise<ExecutionFlow[]>;
     deleteAllFlows(): Promise<void>;
     insertTemporalSnapshot(snapshot: TemporalSnapshot): Promise<void>;
-    getTemporalSnapshots(limit: number): Promise<TemporalSnapshot[]>;
     private nodeTableForId;
     private mapCortexFlowRow;
-    private mapSnapshotRow;
 }
 export {};
 //# sourceMappingURL=repository.d.ts.map

package/dist/src/cortex/repository.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/src/cortex/repository.js CHANGED Viewed

@@ -302,14 +302,6 @@ export class CortexRepository {
         const rows = await this.db.all('SELECT * FROM nodes_method WHERE file_path = $1', filePath);
         return rows.map(this.mapMethodNodeRow);
     }
-    async getInterfacesByFile(filePath) {
-        const rows = await this.db.all('SELECT * FROM nodes_interface WHERE file_path = $1', filePath);
-        return rows.map(this.mapInterfaceNodeRow);
-    }
-    async getTypesByFile(filePath) {
-        const rows = await this.db.all('SELECT * FROM nodes_type WHERE file_path = $1', filePath);
-        return rows.map(this.mapTypeNodeRow);
-    }
     async getVariablesByFile(filePath) {
         const rows = await this.db.all('SELECT * FROM nodes_variable WHERE file_path = $1', filePath);
         return rows.map(this.mapVariableNodeRow);
@@ -409,10 +401,6 @@ export class CortexRepository {
         const rows = await this.db.all('SELECT * FROM edges_reads WHERE source_id = $1', sourceId);
         return rows.map(this.mapReadsEdgeRow);
     }
-    async getReadsOf(targetId) {
-        const rows = await this.db.all('SELECT * FROM edges_reads WHERE target_id = $1', targetId);
-        return rows.map(this.mapReadsEdgeRow);
-    }
     async getWritesFrom(sourceId) {
         const rows = await this.db.all('SELECT * FROM edges_writes WHERE source_id = $1', sourceId);
         return rows.map(this.mapWritesEdgeRow);
@@ -425,10 +413,6 @@ export class CortexRepository {
         const rows = await this.db.all('SELECT * FROM edges_returns WHERE source_id = $1', sourceId);
         return rows.map(this.mapReturnsEdgeRow);
     }
-    async getReturnsTo(targetId) {
-        const rows = await this.db.all('SELECT * FROM edges_returns WHERE target_id = $1', targetId);
-        return rows.map(this.mapReturnsEdgeRow);
-    }
     async getImplementorsOf(interfaceId) {
         const rows = await this.db.all('SELECT * FROM edges_implements WHERE target_id = $1', interfaceId);
         return rows.map(this.mapImplementsEdgeRow);
@@ -607,6 +591,7 @@ export class CortexRepository {
             lineStart: r.line_start,
             lineEnd: r.line_end,
             kind: r.kind,
+            isExported: Boolean(r.is_exported),
         }));
     }
     async getSymbolById(id) {
@@ -752,27 +737,6 @@ export class CortexRepository {
             betweenness: row.betweenness,
         };
     }
-    mapInterfaceNodeRow(row) {
-        return {
-            id: row.id,
-            name: row.name,
-            filePath: row.file_path,
-            lineStart: row.line_start,
-            lineEnd: row.line_end,
-            isExported: row.is_exported,
-        };
-    }
-    mapTypeNodeRow(row) {
-        return {
-            id: row.id,
-            name: row.name,
-            kind: row.kind,
-            filePath: row.file_path,
-            lineStart: row.line_start,
-            lineEnd: row.line_end,
-            isExported: row.is_exported,
-        };
-    }
     mapVariableNodeRow(row) {
         return {
             id: row.id,
@@ -915,44 +879,6 @@ export class CortexRepository {
             line: row.line,
         };
     }
-    // --- Single-item insert/get methods for topology tests ---
-    async insertFunction(node) {
-        await this.insertFunctionNodes([node]);
-    }
-    async getFunction(id) {
-        const rows = await this.db.all('SELECT * FROM nodes_function WHERE id = $1', id);
-        if (rows.length === 0)
-            return null;
-        return this.mapFunctionNodeRow(rows[0]);
-    }
-    async insertClass(node) {
-        await this.insertClassNodes([node]);
-    }
-    async getClass(id) {
-        const rows = await this.db.all('SELECT * FROM nodes_class WHERE id = $1', id);
-        if (rows.length === 0)
-            return null;
-        return this.mapClassNodeRow(rows[0]);
-    }
-    async insertMethod(node) {
-        await this.insertMethodNodes([node]);
-    }
-    async getMethod(id) {
-        const rows = await this.db.all('SELECT * FROM nodes_method WHERE id = $1', id);
-        if (rows.length === 0)
-            return null;
-        return this.mapMethodNodeRow(rows[0]);
-    }
-    async insertFileNode(node) {
-        await this.upsertFileNode({
-            id: node.id,
-            path: node.path,
-            hash: null,
-            language: node.language,
-            depthLevel: node.depthLevel,
-            lastIndexed: null,
-        });
-    }
     // --- Topology write-back methods ---
     async updateNodeMetrics(nodeId, metrics) {
         const table = this.nodeTableForId(nodeId);
@@ -994,20 +920,6 @@ export class CortexRepository {
         const rows = await this.db.all('SELECT * FROM nodes_method');
         return rows.map((r) => this.mapMethodNodeRow(r));
     }
-    // --- Single-item flow CRUD ---
-    async insertFlow(flow) {
-        await this.insertFlows([flow]);
-    }
-    async getFlow(id) {
-        const rows = await this.db.all('SELECT * FROM cortex_flows WHERE id = $1', id);
-        if (rows.length === 0)
-            return null;
-        return this.mapCortexFlowRow(rows[0]);
-    }
-    async getAllFlows() {
-        const rows = await this.db.all('SELECT * FROM cortex_flows');
-        return rows.map((r) => this.mapCortexFlowRow(r));
-    }
     async deleteAllFlows() {
         await this.db.run('DELETE FROM cortex_flows');
     }
@@ -1017,10 +929,6 @@ export class CortexRepository {
              (commit_hash, timestamp, node_counts, edge_counts, community_hash, top_pagerank, hotspot_rankings)
              VALUES ($1, $2, $3, $4, $5, $6, $7)`, snapshot.commitHash, snapshot.timestamp.toISOString(), JSON.stringify(snapshot.nodeCounts), JSON.stringify(snapshot.edgeCounts), snapshot.communityHash, JSON.stringify(snapshot.topPagerank), JSON.stringify(snapshot.hotspotRankings));
     }
-    async getTemporalSnapshots(limit) {
-        const rows = await this.db.all('SELECT * FROM cortex_temporal_snapshots ORDER BY timestamp DESC LIMIT $1', limit);
-        return rows.map((r) => this.mapSnapshotRow(r));
-    }
     // --- Private helpers ---
     nodeTableForId(nodeId) {
         if (nodeId.startsWith('fn:'))
@@ -1055,24 +963,5 @@ export class CortexRepository {
             hasErrorPath: row.has_error_path,
         };
     }
-    mapSnapshotRow(row) {
-        return {
-            commitHash: row.commit_hash,
-            timestamp: new Date(row.timestamp),
-            nodeCounts: typeof row.node_counts === 'string'
-                ? JSON.parse(row.node_counts)
-                : row.node_counts,
-            edgeCounts: typeof row.edge_counts === 'string'
-                ? JSON.parse(row.edge_counts)
-                : row.edge_counts,
-            communityHash: row.community_hash,
-            topPagerank: typeof row.top_pagerank === 'string'
-                ? JSON.parse(row.top_pagerank)
-                : row.top_pagerank,
-            hotspotRankings: typeof row.hotspot_rankings === 'string'
-                ? JSON.parse(row.hotspot_rankings)
-                : row.hotspot_rankings,
-        };
-    }
 }
 //# sourceMappingURL=repository.js.map

package/dist/src/cortex/repository.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/src/cortex/schema.js CHANGED Viewed

@@ -301,17 +301,17 @@ CREATE INDEX IF NOT EXISTS idx_generic_symbol ON generic_instantiations(symbol_i
 `;
 const SYMBOLS_VIEW_DDL = `
 CREATE OR REPLACE VIEW symbols AS
-    SELECT id, name, file_path, line_start, line_end, 'function' AS kind FROM nodes_function
+    SELECT id, name, file_path, line_start, line_end, 'function' AS kind, is_exported FROM nodes_function
     UNION ALL
-    SELECT id, name, file_path, line_start, line_end, 'class' AS kind FROM nodes_class
+    SELECT id, name, file_path, line_start, line_end, 'class' AS kind, is_exported FROM nodes_class
     UNION ALL
-    SELECT id, name, file_path, line_start, line_end, 'method' AS kind FROM nodes_method
+    SELECT id, name, file_path, line_start, line_end, 'method' AS kind, false AS is_exported FROM nodes_method
     UNION ALL
-    SELECT id, name, file_path, line_start, line_end, 'interface' AS kind FROM nodes_interface
+    SELECT id, name, file_path, line_start, line_end, 'interface' AS kind, is_exported FROM nodes_interface
     UNION ALL
-    SELECT id, name, file_path, line_start, line_end, 'type' AS kind FROM nodes_type
+    SELECT id, name, file_path, line_start, line_end, 'type' AS kind, is_exported FROM nodes_type
     UNION ALL
-    SELECT id, name, file_path, line_start, line_end, 'variable' AS kind FROM nodes_variable;
+    SELECT id, name, file_path, line_start, line_end, 'variable' AS kind, is_exported FROM nodes_variable;
 `;
 export async function createCortexSchema(db) {
     await db.exec(NODE_TABLES_DDL);
@@ -348,17 +348,17 @@ export async function refreshSymbolsTable(db) {
     }
     await db.exec(`
         CREATE TABLE symbols AS
-            SELECT id, name, file_path, line_start, line_end, 'function' AS kind FROM nodes_function
+            SELECT id, name, file_path, line_start, line_end, 'function' AS kind, is_exported FROM nodes_function
             UNION ALL
-            SELECT id, name, file_path, line_start, line_end, 'class' AS kind FROM nodes_class
+            SELECT id, name, file_path, line_start, line_end, 'class' AS kind, is_exported FROM nodes_class
             UNION ALL
-            SELECT id, name, file_path, line_start, line_end, 'method' AS kind FROM nodes_method
+            SELECT id, name, file_path, line_start, line_end, 'method' AS kind, false AS is_exported FROM nodes_method
             UNION ALL
-            SELECT id, name, file_path, line_start, line_end, 'interface' AS kind FROM nodes_interface
+            SELECT id, name, file_path, line_start, line_end, 'interface' AS kind, is_exported FROM nodes_interface
             UNION ALL
-            SELECT id, name, file_path, line_start, line_end, 'type' AS kind FROM nodes_type
+            SELECT id, name, file_path, line_start, line_end, 'type' AS kind, is_exported FROM nodes_type
             UNION ALL
-            SELECT id, name, file_path, line_start, line_end, 'variable' AS kind FROM nodes_variable;
+            SELECT id, name, file_path, line_start, line_end, 'variable' AS kind, is_exported FROM nodes_variable;
     `);
 }
 //# sourceMappingURL=schema.js.map

package/dist/src/dna/engine.d.ts CHANGED Viewed

@@ -10,7 +10,7 @@ export declare class DnaEngine {
     private embeddings?;
     private embeddingCache;
     constructor(storage: DnaStorage, embeddings?: EmbeddingModel | undefined);
-    captureInstruction(instruction: string, sessionId: string, source: DnaSource): DnaEntry;
+    captureInstruction(instruction: string, sessionId: string, source: DnaSource, category?: DnaCategory): DnaEntry;
     private cachedEmbed;
     captureInstructionWithPatternMatch(instruction: string, sessionId: string, source: DnaSource): Promise<DnaEntry>;
     findSimilar(instruction: string): Promise<SimilarMatch[]>;

package/dist/src/dna/engine.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/src/dna/engine.js CHANGED Viewed

@@ -16,9 +16,9 @@ export class DnaEngine {
         this.storage = storage;
         this.embeddings = embeddings;
     }
-    captureInstruction(instruction, sessionId, source) {
-        const category = DnaEngine.classifyCategory(instruction);
-        const id = DnaEngine.generateId(category, instruction);
+    captureInstruction(instruction, sessionId, source, category) {
+        const resolvedCategory = category ?? DnaEngine.classifyCategory(instruction);
+        const id = DnaEngine.generateId(resolvedCategory, instruction);
         const existing = this.storage.readEntry(id);
         if (existing) {
             return this.updateExistingEntry(existing, sessionId, source);
@@ -31,7 +31,7 @@ export class DnaEngine {
                 confidence: isExplicit ? EXPLICIT_CONFIDENCE : BASE_CONFIDENCE,
                 source,
                 status: isExplicit ? 'approved' : 'suggested',
-                category,
+                category: resolvedCategory,
                 firstSeen: today,
                 lastSeen: today,
                 occurrences: 1,