sxng-cli 1.2.3 → 1.2.5

package/dist/deep/quality-assess.js

@@ -8,24 +8,25 @@
  * Three indicators (independent thresholds, no weighted sum):
  * - contentDepth: average extracted content length
  * - sourceDiversity: number of distinct domains
- * - novelty: fraction not similar to existing results (SimHash)
+ * - novelty: fraction not similar to earlier approved results (Jaccard)
  *
  * Verdict logic:
  * - good:    all pass
  * - acceptable: 1 fails
- * - poor:    ≥2 fail
+ * - poor:    鈮? fail
  */
-import { SimHash } from './simhash.js';
+import { jaccardSimilarity, resultUrlKey } from './dedupe.js';
 const DEFAULT_THRESHOLDS = {
     contentDepth: 150,
     sourceDiversity: 3,
     novelty: 0.3,
 };
-// ── Indicator computations ────────────────────────────────────────
+const NOVELTY_SIMILARITY_THRESHOLD = 0.75;
+// 鈹€鈹€ Indicator computations 鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€
 /** Extract domain from URL */
 function extractDomain(url) {
     if (url.startsWith('file://'))
-        return ''; // local docs → no domain
+        return ''; // local docs 鈫?no domain
     try {
         return new URL(url).hostname;
     }
@@ -33,7 +34,7 @@ function extractDomain(url) {
         return '';
     }
 }
-/** Compute content depth indicator — average content length of extracted results only */
+/** Compute content depth indicator 鈥?average content length of extracted results only */
 function computeContentDepth(results, threshold) {
     const extracted = results.filter(r => r.content && r.content.length > 0);
     if (extracted.length === 0) {
@@ -43,7 +44,7 @@ function computeContentDepth(results, threshold) {
     const value = totalLength / extracted.length;
     return { value, threshold, pass: value >= threshold };
 }
-/** Compute source diversity indicator — number of distinct domains */
+/** Compute source diversity indicator 鈥?number of distinct domains */
 function computeSourceDiversity(newResults, threshold) {
     const domains = new Set();
     for (const r of newResults) {
@@ -54,47 +55,54 @@ function computeSourceDiversity(newResults, threshold) {
     const value = domains.size;
     return { value, threshold, pass: value >= threshold };
 }
-/** Compute novelty indicator — fraction of new results not similar to existing session results.
- *  Uses SimHash similarity < 0.75 as "not similar" threshold.
- *  Caches SimHash results for performance. */
-function computeNovelty(newResults, sessionResults, threshold) {
+/** Compute text novelty against distinct historical URLs. */
+function computeNovelty(newResults, sessionResults, threshold, seenEarlierUrls) {
     if (newResults.length === 0) {
         return { value: 0, threshold, pass: false };
     }
-    if (sessionResults.length === 0) {
-        // No prior results → everything is novel
+    if (sessionResults.length === 0 && !seenEarlierUrls?.size) {
         return { value: 1, threshold, pass: true };
     }
-    const simhash = new SimHash();
-    // Cache existing hashes to avoid recomputation
-    const existingHashes = sessionResults.map(r => simhash.hash(`${r.title} ${r.content || ''}`));
     let novelCount = 0;
     for (const r of newResults) {
-        const h = simhash.hash(`${r.title} ${r.content || ''}`);
-        let isSimilar = false;
-        for (const existing of existingHashes) {
-            if (simhash.similarity(h, existing) >= 0.75) {
-                isSimilar = true;
-                break;
-            }
-        }
-        if (!isSimilar)
+        const text = r.content || r.title;
+        const repeatedFromEarlierRound = seenEarlierUrls?.has(resultUrlKey(r)) ?? false;
+        const isSimilarToPriorResult = sessionResults.some(existing => existing.url !== r.url
+            && jaccardSimilarity(text, existing.content || existing.title) >= NOVELTY_SIMILARITY_THRESHOLD);
+        if (!repeatedFromEarlierRound && !isSimilarToPriorResult)
             novelCount++;
     }
     const value = novelCount / newResults.length;
     return { value, threshold, pass: value >= threshold };
 }
-// ── Main assessment ───────────────────────────────────────────────
+/** Assess results from the newest recorded round against earlier approved results. */
+export function assessLatestResultQuality(sessionResults, thresholds) {
+    const rounds = sessionResults.flatMap(result => (result.origins || []).map(origin => origin.round).filter((round) => Number.isInteger(round)));
+    if (rounds.length === 0)
+        return assessResultQuality(sessionResults, sessionResults, thresholds);
+    const latestRound = Math.max(...rounds);
+    const isFromRound = (result, predicate) => (result.origins || []).some(origin => origin.round !== undefined && predicate(origin.round));
+    const latestResults = sessionResults.filter(result => isFromRound(result, round => round === latestRound));
+    const priorApproved = sessionResults.filter(result => result.status === 'approved' && isFromRound(result, round => round < latestRound));
+    const seenEarlierUrls = new Set(sessionResults
+        .filter(result => isFromRound(result, round => round < latestRound))
+        .map(result => resultUrlKey(result)));
+    return assessQuality(latestResults, priorApproved, thresholds, seenEarlierUrls);
+}
+// 鈹€鈹€ Main assessment 鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€鈹€
 /** Assess the quality of results against session context.
- *  Programmatic pre-filter only — Agent makes final quality decision.
- *  All indicators use independent thresholds — no weighted sum.
+ *  Programmatic pre-filter only 鈥?Agent makes final quality decision.
+ *  All indicators use independent thresholds 鈥?no weighted sum.
  */
 export function assessResultQuality(results, sessionResults, thresholds) {
+    return assessQuality(results, sessionResults, thresholds);
+}
+function assessQuality(results, sessionResults, thresholds, seenEarlierUrls) {
     const t = { ...DEFAULT_THRESHOLDS, ...thresholds };
     const breakdown = {
         contentDepth: computeContentDepth(results, t.contentDepth),
         sourceDiversity: computeSourceDiversity(results, t.sourceDiversity),
-        novelty: computeNovelty(results, sessionResults, t.novelty),
+        novelty: computeNovelty(results, sessionResults, t.novelty, seenEarlierUrls),
     };
     const failedIndicators = Object.entries(breakdown)
         .filter(([, v]) => !v.pass)

package/dist/deep/quality-assess.js.map

@@ -1 +1 @@
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package/dist/deep/session.d.ts

@@ -15,9 +15,14 @@ export interface SessionResult {
     category?: string;
     score?: number;
     publishedDate?: string;
+    extractedAt?: number;
     byline?: string;
     siteName?: string;
     source?: string;
+    origins?: Array<{
+        query: string;
+        round?: number;
+    }>;
     status?: 'pending' | 'approved' | 'rejected';
     [key: string]: unknown;
 }
@@ -38,7 +43,7 @@ export declare function resolveSessionPath(sessionValue: string): string;
 export declare function initSessionDir(sessionDir: string, owner?: string, description?: string, query?: string): void;
 /** Load accumulated results from session, or return empty */
 export declare function loadSessionResults(sessionDir: string): SessionResult[];
-/** Append new results to session results (dedup by title then URL).
+/** Append new results to session results (dedup by normalized URL).
  *  New results are marked as 'pending' and will not be injected into graph
  *  until approved by Agent quality assessment.
  */
@@ -47,6 +52,7 @@ export declare function appendSessionResults(sessionDir: string, newResults: Ses
 }): {
     added: number;
     total: number;
+    approvedResults: SessionResult[];
 };
 /** Load graph from session, or create empty */
 export declare function loadSessionGraph(sessionDir: string): DirectedGraph<GraphNodeAttrs, GraphEdgeAttrs>;
@@ -62,11 +68,12 @@ export declare function getApprovedResults(sessionDir: string): SessionResult[];
 export declare function approveResults(sessionDir: string, indices: number[]): {
     approved: number;
     total: number;
+    approvedResults: SessionResult[];
 };
 /** Inject approved results into graph (structural layer).
  *  Uses query from session meta.json if not provided.
  */
-export declare function injectApprovedResults(sessionDir: string, query?: string, round?: number): {
+export declare function injectApprovedResults(sessionDir: string, approved: SessionResult[]): {
     nodesAdded: number;
     edgesAdded: number;
 };
@@ -90,6 +97,7 @@ export declare function mergeExtractedContent(sessionDir: string, extracted: Arr
     byline?: string;
     siteName?: string;
     length?: number;
+    extractedAt?: number;
     error?: string;
 }>): {
     updated: number;

package/dist/deep/session.d.ts.map

@@ -1 +1 @@
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package/dist/deep/session.js

@@ -9,7 +9,7 @@ import { readFileSync, writeFileSync, existsSync, mkdirSync } from 'fs';
 import { join } from 'path';
 import { DirectedGraph } from 'graphology';
 import { deserializeGraph, serializeGraph, graphStats, buildStructuralEdges } from './graph.js';
-import { normalizeUrl } from './dedupe.js';
+import { resultUrlKey } from './dedupe.js';
 import { getDefaultSessionRoot, loadSessionMeta } from '../commands/session.js';
 /** Resolve session path. Supports:
  *  - "new": auto-create under default root with unique name
@@ -70,7 +70,7 @@ export function loadSessionResults(sessionDir) {
         return [];
     }
 }
-/** Append new results to session results (dedup by title then URL).
+/** Append new results to session results (dedup by normalized URL).
  *  New results are marked as 'pending' and will not be injected into graph
  *  until approved by Agent quality assessment.
  */
@@ -80,36 +80,42 @@ export function appendSessionResults(sessionDir, newResults, options) {
         mkdirSync(sessionDir, { recursive: true });
     }
     const existing = loadSessionResults(sessionDir);
-    const titleMap = new Map();
+    const currentRounds = loadSessionRounds(sessionDir) || 0;
+    const round = options?.skipRoundIncrement
+        ? Math.max(1, currentRounds)
+        : Math.max(1, currentRounds + 1);
     const urlMap = new Map();
-    // Index existing results by normalized title and URL
     for (const r of existing) {
-        const titleKey = r.title?.toLowerCase().trim();
-        if (titleKey)
-            titleMap.set(titleKey, r);
-        urlMap.set(normalizeUrl(r.url), r);
+        urlMap.set(resultUrlKey(r), r);
     }
+    const mergeOrigins = (target, origins) => {
+        if (!origins?.length)
+            return;
+        const combined = [...(target.origins || []), ...origins];
+        target.origins = Array.from(new Map(combined.map(origin => [`${origin.round ?? round}\0${origin.query}`, { ...origin, round: origin.round ?? round }])).values());
+    };
     // Add new results (dedup: keep first occurrence)
     let added = 0;
+    const approvedResults = [];
     for (const r of newResults) {
-        const titleKey = r.title?.toLowerCase().trim();
-        if (titleKey && titleMap.has(titleKey))
-            continue;
-        const norm = normalizeUrl(r.url);
-        if (urlMap.has(norm))
+        const norm = resultUrlKey(r);
+        const existingResult = urlMap.get(norm);
+        if (existingResult) {
+            const originCount = existingResult.origins?.length ?? 0;
+            mergeOrigins(existingResult, r.origins);
+            if (existingResult.status === 'approved' && (existingResult.origins?.length ?? 0) > originCount) {
+                approvedResults.push(existingResult);
+            }
             continue;
+        }
         // Mark new results as pending
         r.status = 'pending';
-        if (titleKey)
-            titleMap.set(titleKey, r);
+        mergeOrigins(r, r.origins);
         urlMap.set(norm, r);
         added++;
     }
     const all = Array.from(urlMap.values());
-    const currentRounds = loadSessionRounds(sessionDir) || 0;
-    const rounds = options?.skipRoundIncrement
-        ? Math.max(1, currentRounds)
-        : Math.max(1, currentRounds + 1);
+    const rounds = round;
     const file = join(sessionDir, 'results.json');
     try {
         writeFileSync(file, JSON.stringify({
@@ -120,7 +126,7 @@ export function appendSessionResults(sessionDir, newResults, options) {
     catch (e) {
         throw new Error(`Failed to write session results to ${file}: ${e instanceof Error ? e.message : String(e)}`);
     }
-    return { added, total: all.length };
+    return { added, total: all.length, approvedResults };
 }
 /** Load graph from session, or create empty */
 export function loadSessionGraph(sessionDir) {
@@ -173,19 +179,21 @@ export function getApprovedResults(sessionDir) {
 export function approveResults(sessionDir, indices) {
     const results = loadSessionResults(sessionDir);
     const pending = results.filter(r => !r.status || r.status === 'pending');
-    // Create a set of approved URLs for quick lookup
-    const approvedUrls = new Set();
+    // Keep local chunk fragments so selecting one chunk does not approve its siblings.
+    const approvedResultKeys = new Set();
     for (const idx of indices) {
         if (idx >= 0 && idx < pending.length) {
-            approvedUrls.add(normalizeUrl(pending[idx].url));
+            approvedResultKeys.add(resultUrlKey(pending[idx]));
         }
     }
     // Update status
     let approved = 0;
+    const approvedResults = [];
     for (const r of results) {
-        if (approvedUrls.has(normalizeUrl(r.url))) {
+        if (approvedResultKeys.has(resultUrlKey(r))) {
             r.status = 'approved';
             approved++;
+            approvedResults.push(r);
         }
     }
     // Save back
@@ -200,27 +208,32 @@ export function approveResults(sessionDir, indices) {
     catch (e) {
         throw new Error(`Failed to write session results to ${file}: ${e instanceof Error ? e.message : String(e)}`);
     }
-    return { approved, total: results.length };
+    return { approved, total: results.length, approvedResults };
 }
 /** Inject approved results into graph (structural layer).
  *  Uses query from session meta.json if not provided.
  */
-export function injectApprovedResults(sessionDir, query, round) {
-    const approved = getApprovedResults(sessionDir);
+export function injectApprovedResults(sessionDir, approved) {
     if (approved.length === 0) {
         return { nodesAdded: 0, edgesAdded: 0 };
     }
-    // If no query provided, try to get from meta.json
-    let actualQuery = query;
-    if (!actualQuery) {
-        const meta = loadSessionMeta(sessionDir);
-        actualQuery = meta?.query || 'unknown_query';
+    const graph = loadSessionGraph(sessionDir);
+    const beforeNodes = graph.order;
+    const beforeEdges = graph.size;
+    const groups = new Map();
+    for (const result of approved) {
+        for (const origin of result.origins || []) {
+            const key = `${origin.round ?? 0}\0${origin.query}`;
+            const group = groups.get(key) ?? { query: origin.query, round: origin.round, results: [] };
+            group.results.push({ url: result.url, title: result.title, source: result.source });
+            groups.set(key, group);
+        }
+    }
+    for (const group of groups.values()) {
+        buildStructuralEdges(graph, group.query, group.results, group.round);
     }
-    return updateSessionGraph(sessionDir, actualQuery, approved.map(r => ({
-        url: r.url,
-        title: r.title,
-        source: r.source,
-    })), round);
+    saveSessionGraph(sessionDir, graph);
+    return { nodesAdded: graph.order - beforeNodes, edgesAdded: graph.size - beforeEdges };
 }
 /** Count pending results */
 export function countPendingResults(sessionDir) {
@@ -242,13 +255,13 @@ export function mergeExtractedContent(sessionDir, extracted) {
     const results = loadSessionResults(sessionDir);
     const urlMap = new Map();
     for (const r of results) {
-        urlMap.set(normalizeUrl(r.url), r);
+        urlMap.set(resultUrlKey(r), r);
     }
     let updated = 0;
     for (const ex of extracted) {
         if (ex.error)
             continue;
-        const norm = normalizeUrl(ex.url);
+        const norm = resultUrlKey({ url: ex.url, source: ex.url.startsWith('file:') ? 'local' : undefined });
         const existing = urlMap.get(norm);
         if (existing) {
             existing.content = ex.content;
@@ -260,6 +273,8 @@ export function mergeExtractedContent(sessionDir, extracted) {
                 existing.siteName = ex.siteName;
             if (ex.length)
                 existing.contentLength = ex.length;
+            if (ex.extractedAt !== undefined)
+                existing.extractedAt = ex.extractedAt;
             updated++;
         }
     }

package/dist/deep/session.js.map

@@ -1 +1 @@
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package/dist/runCli.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"runCli.d.ts","sourceRoot":"","sources":["../src/runCli.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAOpC,OAAO,EAAE,cAAc,EAA+C,MAAM,cAAc,CAAC;AAyvB3F,wBAAgB,aAAa,IAAI,OAAO,CAwiBvC;AAED,wBAAsB,MAAM,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,OAAO,EAAE,cAAc,GAAG,OAAO,CAAC,MAAM,GAAG,IAAI,CAAC,CAyO5F"}

package/dist/runCli.js

@@ -19,13 +19,13 @@ import { runDocSearch } from './commands/doc-search.js';
 import { runGraphObfuscateCommand } from './commands/graph-obfuscate.js';
 import { ContentExtractor } from './deep/extractor.js';
 import { rrf } from './deep/rrf.js';
-import { normalizeUrl } from './deep/dedupe.js';
+import { normalizeUrl, resultUrlKey } from './deep/dedupe.js';
 import { graphStats } from './deep/graph.js';
 import { initSessionDir, resolveSessionPath, appendSessionResults, loadSessionResults, loadSessionGraph, countPendingResults, getPendingResults, approveResults, injectApprovedResults } from './deep/session.js';
 import { runSessionList, runSessionDelete } from './commands/session.js';
 import { graphPreprocess } from './deep/graph-preprocess.js';
 import { checkQueryRedundancy } from './deep/query-redundancy.js';
-import { assessResultQuality } from './deep/quality-assess.js';
+import { assessLatestResultQuality, assessResultQuality } from './deep/quality-assess.js';
 import { generateQuerySuggestions } from './deep/query-suggest.js';
 import { determineSearchStage, getStrategyInfo } from './deep/search-strategy.js';
 import { analyzeRecoveryOptions } from './deep/recovery-analysis.js';
@@ -127,6 +127,16 @@ function formatPreprocessAsMarkdown(data) {
         }
         lines.push('');
     }
+    if (data.resultProvenance?.length) {
+        lines.push('### Result Provenance');
+        lines.push('');
+        lines.push('| ID | URL | Title | Rounds |');
+        lines.push('|----|-----|-------|--------|');
+        for (const result of data.resultProvenance) {
+            lines.push(`| ${result.id} | ${result.url} | ${result.title} | ${result.rounds.join(', ') || '-'} |`);
+        }
+        lines.push('');
+    }
     return lines.join('\n');
 }
 function formatQualityAsMarkdown(data) {
@@ -452,7 +462,11 @@ async function runSearch(service, options) {
             const results = await service.search(searchOptions);
             let sessionInfo = null;
             if (options.session) {
-                sessionInfo = appendSessionResults(options.session, results.results);
+                sessionInfo = appendSessionResults(options.session, results.results.map(result => ({
+                    ...result,
+                    origins: [{ query: queries[0] }],
+                })));
+                injectApprovedResults(options.session, sessionInfo.approvedResults);
                 // Check pending count and warn if >= 30
                 const pendingCount = countPendingResults(options.session);
                 if (pendingCount >= 30) {
@@ -464,15 +478,16 @@ async function runSearch(service, options) {
             if (options.session) {
                 const allSessionResults = loadSessionResults(options.session);
                 const rankings = [
-                    results.results.map(r => ({ id: normalizeUrl(r.url), ...r })),
-                    allSessionResults.map(r => ({ id: normalizeUrl(r.url), ...r })),
+                    results.results.map(r => ({ id: resultUrlKey(r), ...r })),
+                    allSessionResults.map(r => ({ id: resultUrlKey(r), ...r })),
                 ];
                 const fused = rrf(rankings);
                 const urlMap = new Map();
-                for (const r of results.results)
-                    urlMap.set(normalizeUrl(r.url), r);
                 for (const r of allSessionResults)
-                    urlMap.set(normalizeUrl(r.url), r);
+                    urlMap.set(resultUrlKey(r), r);
+                // Keep current search content when it overlaps with older session data.
+                for (const r of results.results)
+                    urlMap.set(resultUrlKey(r), r);
                 displayResults = fused
                     .map(item => {
                     const original = urlMap.get(item.id);
@@ -599,7 +614,20 @@ async function runSearch(service, options) {
         }
         let sessionInfo = null;
         if (options.session) {
-            sessionInfo = appendSessionResults(options.session, fusedResults);
+            const originsByUrl = new Map();
+            for (const response of allResponses) {
+                for (const result of response.results) {
+                    const key = normalizeUrl(result.url);
+                    const origins = originsByUrl.get(key) || [];
+                    origins.push({ query: response.query });
+                    originsByUrl.set(key, origins);
+                }
+            }
+            sessionInfo = appendSessionResults(options.session, fusedResults.map(result => ({
+                ...result,
+                origins: originsByUrl.get(normalizeUrl(result.url)),
+            })));
+            injectApprovedResults(options.session, sessionInfo.approvedResults);
             // Check pending count and warn if >= 30
             const pendingCount = countPendingResults(options.session);
             if (pendingCount >= 30) {
@@ -724,7 +752,7 @@ export function createProgram() {
     program
         .command('graph-add')
         .argument('<path>', 'Graph file or session name')
-        .description('Add entities/edges to knowledge graph. Results must be approved first via --quality --approve.')
+        .description('Add entities/edges to knowledge graph. New entities require sourceRounds from graph-preprocess.')
         .requiredOption('--data <json>', 'JSON with entities/edges')
         .action(async (path, opts) => {
         const code = await runGraphAdd({
@@ -738,9 +766,10 @@ export function createProgram() {
         .argument('<session>', 'Session directory or name')
         .description('Append external search results to session as pending (awaiting quality assessment)')
         .requiredOption('--data <json>', 'JSON array of results or object with "results" array')
+        .requiredOption('--query <query>', 'Search query that produced these results')
         .addHelpText('after', `
 Examples:
-  sxng results-add my-session --data '[{"url":"https://...","title":"...","source":"tavily"}]'
+  sxng results-add my-session --query "async runtime" --data '[{"url":"https://...","title":"...","source":"tavily"}]'
 
 Results are marked as pending and go through the same approve pipeline as sxng-native results.
 Use --quality --approve to inject into graph.`)
@@ -748,6 +777,7 @@ Use --quality --approve to inject into graph.`)
         const code = await runResultsAdd({
             session,
             data: opts.data,
+            query: opts.query,
         });
         process.exit(code);
     });
@@ -834,7 +864,7 @@ and write them back via graph-add.`)
     program
         .command('graph-preprocess')
         .argument('<session>', 'Session directory or name')
-        .description('Preprocess session data: TF-IDF, co-occurrence, entity context')
+        .description('Preprocess session data: TF-IDF, co-occurrence, entity context, and result provenance')
         .option('--top <n>', 'Top N terms to return', val => parseInt(val, 10), 30)
         .option('--co-occurrence-threshold <n>', 'Min co-occurrence count', val => parseInt(val, 10), 2)
         .option('--max-terms <n>', 'Max terms for co-occurrence matrix', val => parseInt(val, 10), 50)
@@ -872,7 +902,7 @@ Examples:
         const graph = loadSessionGraph(sessionDir);
         const results = loadSessionResults(sessionDir);
         const stage = determineSearchStage(graph);
-        const quality = assessResultQuality(results, results);
+        const quality = assessLatestResultQuality(results);
         const data = generateQuerySuggestions(graph, results, stage, quality);
         if (opts.format === 'md') {
             console.log(formatSuggestAsMarkdown(data));
@@ -921,7 +951,7 @@ Examples:
         const sessionDir = resolveSessionPath(session);
         const graph = loadSessionGraph(sessionDir);
         const results = loadSessionResults(sessionDir);
-        const quality = assessResultQuality(results, results);
+        const quality = assessLatestResultQuality(results);
         const analysis = analyzeRecoveryOptions(graph, results, quality);
         if (opts.format === 'md') {
             console.log(formatRecoveryAsMarkdown(analysis));
@@ -1211,9 +1241,9 @@ export async function runCli(args, service) {
             // Handle Agent approval first (before showing quality assessment)
             if (opts.approve) {
                 const indices = opts.approve.split(',').map((s) => parseInt(s.trim(), 10)).filter((n) => !isNaN(n));
-                const { approved, total } = approveResults(sessionDir, indices);
-                // Inject approved results into graph
-                const injectInfo = injectApprovedResults(sessionDir);
+                const { approved, total, approvedResults } = approveResults(sessionDir, indices);
+                // Inject only the results selected by this approval action.
+                const injectInfo = injectApprovedResults(sessionDir, approvedResults);
                 console.log(JSON.stringify(createSuccessEnvelope({
                     approved,
                     total,